Multiple sequence alignment - TraesCS5A01G166600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G166600 chr5A 100.000 3633 0 0 2020 5652 355470764 355467132 0.000000e+00 6709.0
1 TraesCS5A01G166600 chr5A 100.000 1845 0 0 1 1845 355472783 355470939 0.000000e+00 3408.0
2 TraesCS5A01G166600 chr5A 87.611 113 13 1 2077 2189 227926522 227926411 4.600000e-26 130.0
3 TraesCS5A01G166600 chr5D 93.279 1473 41 13 3761 5195 268341444 268339992 0.000000e+00 2119.0
4 TraesCS5A01G166600 chr5D 94.132 1227 47 15 640 1844 268344741 268343518 0.000000e+00 1844.0
5 TraesCS5A01G166600 chr5D 93.628 1130 39 8 2022 3123 268343197 268342073 0.000000e+00 1657.0
6 TraesCS5A01G166600 chr5D 92.462 650 32 5 3112 3757 268342051 268341415 0.000000e+00 913.0
7 TraesCS5A01G166600 chr5D 95.380 368 15 2 5184 5550 268283037 268282671 8.160000e-163 584.0
8 TraesCS5A01G166600 chr5D 90.909 209 13 1 1 209 325964092 325963890 5.580000e-70 276.0
9 TraesCS5A01G166600 chr5D 97.170 106 2 1 5545 5650 268282593 268282489 1.620000e-40 178.0
10 TraesCS5A01G166600 chr5D 90.826 109 9 1 2077 2185 114623183 114623076 1.640000e-30 145.0
11 TraesCS5A01G166600 chr5B 93.394 1211 50 14 644 1825 303598715 303597506 0.000000e+00 1766.0
12 TraesCS5A01G166600 chr5B 94.682 1147 37 10 3776 4916 303595289 303594161 0.000000e+00 1759.0
13 TraesCS5A01G166600 chr5B 94.479 1123 51 7 2571 3690 303596432 303595318 0.000000e+00 1720.0
14 TraesCS5A01G166600 chr5B 94.539 531 25 3 2020 2549 303597269 303596742 0.000000e+00 817.0
15 TraesCS5A01G166600 chr5B 93.473 383 17 4 5269 5650 303587453 303587078 3.820000e-156 562.0
16 TraesCS5A01G166600 chr5B 93.048 374 20 3 4912 5283 303589128 303588759 4.980000e-150 542.0
17 TraesCS5A01G166600 chr5B 93.651 252 16 0 394 645 303600963 303600712 1.490000e-100 377.0
18 TraesCS5A01G166600 chr5B 88.995 209 17 1 1 209 608354468 608354266 2.610000e-63 254.0
19 TraesCS5A01G166600 chr4D 87.765 425 50 2 225 647 327389353 327389777 3.930000e-136 496.0
20 TraesCS5A01G166600 chr4D 89.952 209 15 1 1 209 77119704 77119906 1.210000e-66 265.0
21 TraesCS5A01G166600 chr4D 95.349 43 1 1 1337 1378 450203750 450203792 3.650000e-07 67.6
22 TraesCS5A01G166600 chr2D 86.085 424 58 1 225 647 133727858 133727435 6.680000e-124 455.0
23 TraesCS5A01G166600 chr2A 81.733 427 69 9 225 647 440539531 440539110 1.170000e-91 348.0
24 TraesCS5A01G166600 chr4B 81.455 426 74 5 225 647 253719364 253718941 1.510000e-90 344.0
25 TraesCS5A01G166600 chr4B 89.474 209 14 3 1 209 529408647 529408847 2.020000e-64 257.0
26 TraesCS5A01G166600 chr3D 81.951 410 65 8 226 631 135814167 135814571 7.010000e-89 339.0
27 TraesCS5A01G166600 chr4A 80.760 421 78 3 225 643 171195385 171194966 5.460000e-85 326.0
28 TraesCS5A01G166600 chr7A 80.238 420 77 6 225 641 433678734 433679150 1.530000e-80 311.0
29 TraesCS5A01G166600 chr7D 91.866 209 17 0 1 209 608433550 608433758 5.540000e-75 292.0
30 TraesCS5A01G166600 chr7D 91.667 48 3 1 1337 1383 566231005 566231052 1.310000e-06 65.8
31 TraesCS5A01G166600 chr6D 79.059 425 84 5 225 647 200438835 200439256 2.580000e-73 287.0
32 TraesCS5A01G166600 chr6D 89.474 209 16 1 1 209 71519310 71519512 5.620000e-65 259.0
33 TraesCS5A01G166600 chr6B 90.431 209 14 1 1 209 163545841 163545639 2.600000e-68 270.0
34 TraesCS5A01G166600 chr6B 77.882 425 91 3 225 647 325019453 325019876 1.560000e-65 261.0
35 TraesCS5A01G166600 chr6B 87.097 124 14 2 2070 2192 205267225 205267347 7.640000e-29 139.0
36 TraesCS5A01G166600 chr7B 89.952 209 15 1 1 209 115232818 115232616 1.210000e-66 265.0
37 TraesCS5A01G166600 chr7B 87.069 116 15 0 2070 2185 511462093 511462208 1.280000e-26 132.0
38 TraesCS5A01G166600 chr1D 89.423 208 16 1 1 208 436087969 436087768 2.020000e-64 257.0
39 TraesCS5A01G166600 chr1D 92.157 51 1 3 1337 1385 204855516 204855565 1.020000e-07 69.4
40 TraesCS5A01G166600 chr6A 87.903 124 13 2 2070 2192 144266557 144266679 1.640000e-30 145.0
41 TraesCS5A01G166600 chr6A 91.228 57 3 2 1336 1391 609594927 609594982 6.070000e-10 76.8
42 TraesCS5A01G166600 chr6A 89.474 57 4 2 1322 1377 604571373 604571318 2.830000e-08 71.3
43 TraesCS5A01G166600 chr1A 86.885 122 14 2 2070 2189 463825451 463825330 9.880000e-28 135.0
44 TraesCS5A01G166600 chr1A 87.611 113 13 1 2077 2189 30182765 30182654 4.600000e-26 130.0
45 TraesCS5A01G166600 chr1B 88.679 53 4 2 1337 1388 452754410 452754359 4.730000e-06 63.9
46 TraesCS5A01G166600 chrUn 86.207 58 5 2 1321 1377 376482435 376482490 6.120000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G166600 chr5A 355467132 355472783 5651 True 5058.50 6709 100.00000 1 5652 2 chr5A.!!$R2 5651
1 TraesCS5A01G166600 chr5D 268339992 268344741 4749 True 1633.25 2119 93.37525 640 5195 4 chr5D.!!$R4 4555
2 TraesCS5A01G166600 chr5D 268282489 268283037 548 True 381.00 584 96.27500 5184 5650 2 chr5D.!!$R3 466
3 TraesCS5A01G166600 chr5B 303594161 303600963 6802 True 1287.80 1766 94.14900 394 4916 5 chr5B.!!$R3 4522
4 TraesCS5A01G166600 chr5B 303587078 303589128 2050 True 552.00 562 93.26050 4912 5650 2 chr5B.!!$R2 738

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
249 250 0.243095 CCCTTCTTTCAGCAGCAAGC 59.757 55.0 0.00 0.00 46.19 4.01 F
1610 3643 0.099968 CTTGCATGCAGATGGAACCG 59.900 55.0 21.50 0.00 35.19 4.44 F
2680 5174 0.033366 TCCATCACGTGACACACTGG 59.967 55.0 22.71 23.09 30.42 4.00 F
3368 5896 0.460311 CCTAGGGTTAGGCAGTGACG 59.540 60.0 0.00 0.00 40.10 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2158 4338 0.392998 ATCCCGAATTGCTTGTCGCT 60.393 50.0 0.0 0.0 40.11 4.93 R
3589 6120 0.409092 ATTCCATGTTCACCCTGCCA 59.591 50.0 0.0 0.0 0.00 4.92 R
3714 6245 0.179192 CTGTGTGTGTGTGTGTGTGC 60.179 55.0 0.0 0.0 0.00 4.57 R
4902 7467 0.539986 TCGATGCTAGGAACCAACCC 59.460 55.0 0.0 0.0 0.00 4.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.748144 CCCACCTCCAAGGCTGGC 62.748 72.222 0.00 0.00 43.17 4.85
18 19 4.748144 CCACCTCCAAGGCTGGCC 62.748 72.222 3.00 3.00 43.17 5.36
19 20 4.748144 CACCTCCAAGGCTGGCCC 62.748 72.222 8.11 0.00 43.17 5.80
40 41 3.692406 GGAAGACCCGCTCCACGT 61.692 66.667 0.00 0.00 41.42 4.49
41 42 2.432628 GAAGACCCGCTCCACGTG 60.433 66.667 9.08 9.08 41.42 4.49
42 43 2.915659 AAGACCCGCTCCACGTGA 60.916 61.111 19.30 2.03 41.42 4.35
43 44 2.430382 GAAGACCCGCTCCACGTGAA 62.430 60.000 19.30 0.00 41.42 3.18
44 45 2.432628 GACCCGCTCCACGTGAAG 60.433 66.667 19.30 7.48 41.42 3.02
45 46 3.934391 GACCCGCTCCACGTGAAGG 62.934 68.421 19.30 13.69 41.42 3.46
46 47 4.003788 CCCGCTCCACGTGAAGGT 62.004 66.667 19.30 0.00 41.42 3.50
47 48 2.738521 CCGCTCCACGTGAAGGTG 60.739 66.667 19.30 12.37 41.42 4.00
48 49 3.414700 CGCTCCACGTGAAGGTGC 61.415 66.667 19.30 12.12 41.09 5.01
49 50 3.050275 GCTCCACGTGAAGGTGCC 61.050 66.667 19.30 0.00 39.18 5.01
50 51 2.743718 CTCCACGTGAAGGTGCCT 59.256 61.111 19.30 0.00 36.59 4.75
51 52 1.669115 CTCCACGTGAAGGTGCCTG 60.669 63.158 19.30 0.00 36.59 4.85
52 53 2.111043 CCACGTGAAGGTGCCTGT 59.889 61.111 19.30 0.00 36.59 4.00
53 54 1.961277 CCACGTGAAGGTGCCTGTC 60.961 63.158 19.30 0.00 36.59 3.51
54 55 2.029073 ACGTGAAGGTGCCTGTCG 59.971 61.111 0.00 0.49 0.00 4.35
55 56 2.029073 CGTGAAGGTGCCTGTCGT 59.971 61.111 0.00 0.00 0.00 4.34
56 57 2.310233 CGTGAAGGTGCCTGTCGTG 61.310 63.158 0.00 0.00 0.00 4.35
57 58 1.961277 GTGAAGGTGCCTGTCGTGG 60.961 63.158 0.00 0.00 0.00 4.94
58 59 2.358737 GAAGGTGCCTGTCGTGGG 60.359 66.667 0.00 0.00 0.00 4.61
59 60 3.901797 GAAGGTGCCTGTCGTGGGG 62.902 68.421 0.00 0.00 0.00 4.96
144 145 3.081409 CGGACGGGGGAGGATGTT 61.081 66.667 0.00 0.00 0.00 2.71
145 146 2.908796 GGACGGGGGAGGATGTTC 59.091 66.667 0.00 0.00 0.00 3.18
146 147 2.499685 GACGGGGGAGGATGTTCG 59.500 66.667 0.00 0.00 0.00 3.95
147 148 3.081409 ACGGGGGAGGATGTTCGG 61.081 66.667 0.00 0.00 0.00 4.30
148 149 4.547367 CGGGGGAGGATGTTCGGC 62.547 72.222 0.00 0.00 0.00 5.54
149 150 4.547367 GGGGGAGGATGTTCGGCG 62.547 72.222 0.00 0.00 0.00 6.46
150 151 4.547367 GGGGAGGATGTTCGGCGG 62.547 72.222 7.21 0.00 0.00 6.13
152 153 4.162690 GGAGGATGTTCGGCGGCT 62.163 66.667 7.21 0.00 0.00 5.52
153 154 2.125106 GAGGATGTTCGGCGGCTT 60.125 61.111 7.21 0.00 0.00 4.35
154 155 2.125106 AGGATGTTCGGCGGCTTC 60.125 61.111 7.21 8.25 0.00 3.86
155 156 2.125106 GGATGTTCGGCGGCTTCT 60.125 61.111 7.21 0.00 0.00 2.85
156 157 2.464459 GGATGTTCGGCGGCTTCTG 61.464 63.158 7.21 0.00 0.00 3.02
157 158 2.436646 ATGTTCGGCGGCTTCTGG 60.437 61.111 7.21 0.00 0.00 3.86
158 159 3.254024 ATGTTCGGCGGCTTCTGGT 62.254 57.895 7.21 0.00 0.00 4.00
159 160 2.668550 GTTCGGCGGCTTCTGGTT 60.669 61.111 7.21 0.00 0.00 3.67
160 161 2.112297 TTCGGCGGCTTCTGGTTT 59.888 55.556 7.21 0.00 0.00 3.27
161 162 0.952010 GTTCGGCGGCTTCTGGTTTA 60.952 55.000 7.21 0.00 0.00 2.01
162 163 0.672401 TTCGGCGGCTTCTGGTTTAG 60.672 55.000 7.21 0.00 0.00 1.85
163 164 2.750888 CGGCGGCTTCTGGTTTAGC 61.751 63.158 7.61 0.00 36.66 3.09
164 165 2.750888 GGCGGCTTCTGGTTTAGCG 61.751 63.158 0.00 0.00 38.28 4.26
165 166 1.740296 GCGGCTTCTGGTTTAGCGA 60.740 57.895 0.00 0.00 38.28 4.93
166 167 1.090052 GCGGCTTCTGGTTTAGCGAT 61.090 55.000 0.00 0.00 38.28 4.58
167 168 1.369625 CGGCTTCTGGTTTAGCGATT 58.630 50.000 0.00 0.00 38.28 3.34
168 169 1.737793 CGGCTTCTGGTTTAGCGATTT 59.262 47.619 0.00 0.00 38.28 2.17
169 170 2.476185 CGGCTTCTGGTTTAGCGATTTG 60.476 50.000 0.00 0.00 38.28 2.32
170 171 2.159379 GGCTTCTGGTTTAGCGATTTGG 60.159 50.000 0.00 0.00 38.28 3.28
171 172 2.159379 GCTTCTGGTTTAGCGATTTGGG 60.159 50.000 0.00 0.00 0.00 4.12
172 173 2.122783 TCTGGTTTAGCGATTTGGGG 57.877 50.000 0.00 0.00 0.00 4.96
173 174 1.102978 CTGGTTTAGCGATTTGGGGG 58.897 55.000 0.00 0.00 0.00 5.40
174 175 0.968393 TGGTTTAGCGATTTGGGGGC 60.968 55.000 0.00 0.00 0.00 5.80
175 176 1.672854 GGTTTAGCGATTTGGGGGCC 61.673 60.000 0.00 0.00 0.00 5.80
176 177 0.683179 GTTTAGCGATTTGGGGGCCT 60.683 55.000 0.84 0.00 0.00 5.19
177 178 0.395173 TTTAGCGATTTGGGGGCCTC 60.395 55.000 0.84 0.00 0.00 4.70
178 179 2.279037 TTAGCGATTTGGGGGCCTCC 62.279 60.000 17.64 17.64 0.00 4.30
180 181 4.875713 CGATTTGGGGGCCTCCGG 62.876 72.222 19.45 0.00 36.01 5.14
181 182 3.416880 GATTTGGGGGCCTCCGGA 61.417 66.667 19.45 8.47 36.01 5.14
182 183 3.420482 ATTTGGGGGCCTCCGGAG 61.420 66.667 25.36 25.36 36.01 4.63
210 211 4.459089 GTGCGACCCAGGAGGCTC 62.459 72.222 5.78 5.78 40.58 4.70
211 212 4.704103 TGCGACCCAGGAGGCTCT 62.704 66.667 15.23 0.00 40.58 4.09
212 213 3.394836 GCGACCCAGGAGGCTCTT 61.395 66.667 15.23 3.23 40.58 2.85
213 214 2.960688 GCGACCCAGGAGGCTCTTT 61.961 63.158 15.23 0.00 40.58 2.52
214 215 1.614241 GCGACCCAGGAGGCTCTTTA 61.614 60.000 15.23 0.00 40.58 1.85
215 216 0.461961 CGACCCAGGAGGCTCTTTAG 59.538 60.000 15.23 2.75 40.58 1.85
225 226 2.677971 GCTCTTTAGCGATTCGGCA 58.322 52.632 8.34 0.00 39.39 5.69
226 227 1.221414 GCTCTTTAGCGATTCGGCAT 58.779 50.000 8.34 0.00 39.39 4.40
227 228 2.404215 GCTCTTTAGCGATTCGGCATA 58.596 47.619 8.34 0.00 39.39 3.14
228 229 2.155924 GCTCTTTAGCGATTCGGCATAC 59.844 50.000 8.34 0.00 39.39 2.39
229 230 3.643763 CTCTTTAGCGATTCGGCATACT 58.356 45.455 8.34 0.00 34.64 2.12
230 231 3.639538 TCTTTAGCGATTCGGCATACTC 58.360 45.455 8.34 0.00 34.64 2.59
231 232 2.433868 TTAGCGATTCGGCATACTCC 57.566 50.000 8.34 0.00 34.64 3.85
232 233 0.601558 TAGCGATTCGGCATACTCCC 59.398 55.000 8.34 0.00 34.64 4.30
233 234 1.115930 AGCGATTCGGCATACTCCCT 61.116 55.000 8.34 0.00 34.64 4.20
234 235 0.249911 GCGATTCGGCATACTCCCTT 60.250 55.000 8.34 0.00 0.00 3.95
235 236 1.784525 CGATTCGGCATACTCCCTTC 58.215 55.000 0.00 0.00 0.00 3.46
236 237 1.341531 CGATTCGGCATACTCCCTTCT 59.658 52.381 0.00 0.00 0.00 2.85
237 238 2.224066 CGATTCGGCATACTCCCTTCTT 60.224 50.000 0.00 0.00 0.00 2.52
238 239 3.741388 CGATTCGGCATACTCCCTTCTTT 60.741 47.826 0.00 0.00 0.00 2.52
239 240 2.981859 TCGGCATACTCCCTTCTTTC 57.018 50.000 0.00 0.00 0.00 2.62
240 241 2.184533 TCGGCATACTCCCTTCTTTCA 58.815 47.619 0.00 0.00 0.00 2.69
241 242 2.168521 TCGGCATACTCCCTTCTTTCAG 59.831 50.000 0.00 0.00 0.00 3.02
242 243 2.293170 GGCATACTCCCTTCTTTCAGC 58.707 52.381 0.00 0.00 0.00 4.26
243 244 2.356125 GGCATACTCCCTTCTTTCAGCA 60.356 50.000 0.00 0.00 0.00 4.41
244 245 2.941720 GCATACTCCCTTCTTTCAGCAG 59.058 50.000 0.00 0.00 0.00 4.24
245 246 2.770164 TACTCCCTTCTTTCAGCAGC 57.230 50.000 0.00 0.00 0.00 5.25
246 247 0.767375 ACTCCCTTCTTTCAGCAGCA 59.233 50.000 0.00 0.00 0.00 4.41
247 248 1.143684 ACTCCCTTCTTTCAGCAGCAA 59.856 47.619 0.00 0.00 0.00 3.91
248 249 1.811359 CTCCCTTCTTTCAGCAGCAAG 59.189 52.381 0.00 0.00 0.00 4.01
249 250 0.243095 CCCTTCTTTCAGCAGCAAGC 59.757 55.000 0.00 0.00 46.19 4.01
263 264 4.061596 GCAGCAAGCTTCTAATAGGTAGG 58.938 47.826 0.00 0.00 41.15 3.18
264 265 4.061596 CAGCAAGCTTCTAATAGGTAGGC 58.938 47.826 0.00 0.00 0.00 3.93
265 266 3.711704 AGCAAGCTTCTAATAGGTAGGCA 59.288 43.478 0.00 0.00 32.04 4.75
266 267 4.164221 AGCAAGCTTCTAATAGGTAGGCAA 59.836 41.667 0.00 0.00 32.04 4.52
267 268 4.881850 GCAAGCTTCTAATAGGTAGGCAAA 59.118 41.667 0.00 0.00 0.00 3.68
268 269 5.357032 GCAAGCTTCTAATAGGTAGGCAAAA 59.643 40.000 0.00 0.00 0.00 2.44
269 270 6.127730 GCAAGCTTCTAATAGGTAGGCAAAAA 60.128 38.462 0.00 0.00 0.00 1.94
270 271 7.416777 GCAAGCTTCTAATAGGTAGGCAAAAAT 60.417 37.037 0.00 0.00 0.00 1.82
271 272 9.120538 CAAGCTTCTAATAGGTAGGCAAAAATA 57.879 33.333 0.00 0.00 0.00 1.40
272 273 9.695155 AAGCTTCTAATAGGTAGGCAAAAATAA 57.305 29.630 0.00 0.00 0.00 1.40
273 274 9.868160 AGCTTCTAATAGGTAGGCAAAAATAAT 57.132 29.630 0.00 0.00 0.00 1.28
282 283 7.335627 AGGTAGGCAAAAATAATTAAAAGGGC 58.664 34.615 0.00 0.00 0.00 5.19
283 284 7.182026 AGGTAGGCAAAAATAATTAAAAGGGCT 59.818 33.333 0.00 0.00 0.00 5.19
284 285 8.479689 GGTAGGCAAAAATAATTAAAAGGGCTA 58.520 33.333 0.00 0.00 0.00 3.93
285 286 9.878667 GTAGGCAAAAATAATTAAAAGGGCTAA 57.121 29.630 10.30 0.00 33.56 3.09
287 288 9.226606 AGGCAAAAATAATTAAAAGGGCTAAAC 57.773 29.630 0.00 0.00 0.00 2.01
288 289 9.226606 GGCAAAAATAATTAAAAGGGCTAAACT 57.773 29.630 0.00 0.00 0.00 2.66
299 300 9.695155 TTAAAAGGGCTAAACTTTATAGCATCT 57.305 29.630 7.73 2.37 46.01 2.90
300 301 7.573968 AAAGGGCTAAACTTTATAGCATCTG 57.426 36.000 7.73 0.00 46.01 2.90
301 302 5.625150 AGGGCTAAACTTTATAGCATCTGG 58.375 41.667 7.73 0.00 46.01 3.86
302 303 5.369699 AGGGCTAAACTTTATAGCATCTGGA 59.630 40.000 7.73 0.00 46.01 3.86
303 304 6.044871 AGGGCTAAACTTTATAGCATCTGGAT 59.955 38.462 7.73 0.00 46.01 3.41
304 305 6.372937 GGGCTAAACTTTATAGCATCTGGATC 59.627 42.308 7.73 0.00 46.01 3.36
305 306 6.372937 GGCTAAACTTTATAGCATCTGGATCC 59.627 42.308 4.20 4.20 46.01 3.36
306 307 6.091441 GCTAAACTTTATAGCATCTGGATCCG 59.909 42.308 7.39 2.06 44.11 4.18
307 308 5.552870 AACTTTATAGCATCTGGATCCGT 57.447 39.130 7.39 0.00 0.00 4.69
308 309 6.665992 AACTTTATAGCATCTGGATCCGTA 57.334 37.500 7.39 0.00 0.00 4.02
309 310 6.665992 ACTTTATAGCATCTGGATCCGTAA 57.334 37.500 7.39 0.00 0.00 3.18
310 311 6.692486 ACTTTATAGCATCTGGATCCGTAAG 58.308 40.000 7.39 0.00 0.00 2.34
311 312 6.493802 ACTTTATAGCATCTGGATCCGTAAGA 59.506 38.462 7.39 4.91 43.02 2.10
312 313 7.179338 ACTTTATAGCATCTGGATCCGTAAGAT 59.821 37.037 7.39 7.26 43.02 2.40
325 326 5.593679 TCCGTAAGATCAAGTTTAGGAGG 57.406 43.478 0.00 0.00 43.02 4.30
326 327 5.266788 TCCGTAAGATCAAGTTTAGGAGGA 58.733 41.667 0.00 0.00 43.02 3.71
327 328 5.360144 TCCGTAAGATCAAGTTTAGGAGGAG 59.640 44.000 0.00 0.00 43.02 3.69
328 329 5.452077 CCGTAAGATCAAGTTTAGGAGGAGG 60.452 48.000 0.00 0.00 43.02 4.30
329 330 5.360144 CGTAAGATCAAGTTTAGGAGGAGGA 59.640 44.000 0.00 0.00 43.02 3.71
330 331 5.948742 AAGATCAAGTTTAGGAGGAGGAG 57.051 43.478 0.00 0.00 0.00 3.69
331 332 4.294347 AGATCAAGTTTAGGAGGAGGAGG 58.706 47.826 0.00 0.00 0.00 4.30
332 333 3.562108 TCAAGTTTAGGAGGAGGAGGT 57.438 47.619 0.00 0.00 0.00 3.85
333 334 3.870559 TCAAGTTTAGGAGGAGGAGGTT 58.129 45.455 0.00 0.00 0.00 3.50
334 335 3.838903 TCAAGTTTAGGAGGAGGAGGTTC 59.161 47.826 0.00 0.00 0.00 3.62
335 336 2.835389 AGTTTAGGAGGAGGAGGTTCC 58.165 52.381 0.00 0.00 37.52 3.62
346 347 2.941583 AGGTTCCTCCTTGGGCCC 60.942 66.667 17.59 17.59 45.67 5.80
347 348 2.941583 GGTTCCTCCTTGGGCCCT 60.942 66.667 25.70 0.00 36.20 5.19
348 349 2.548547 GGTTCCTCCTTGGGCCCTT 61.549 63.158 25.70 0.00 36.20 3.95
349 350 1.465172 GTTCCTCCTTGGGCCCTTT 59.535 57.895 25.70 0.00 36.20 3.11
350 351 0.702316 GTTCCTCCTTGGGCCCTTTA 59.298 55.000 25.70 7.54 36.20 1.85
351 352 1.288037 GTTCCTCCTTGGGCCCTTTAT 59.712 52.381 25.70 0.00 36.20 1.40
352 353 2.512476 GTTCCTCCTTGGGCCCTTTATA 59.488 50.000 25.70 0.00 36.20 0.98
353 354 2.418669 TCCTCCTTGGGCCCTTTATAG 58.581 52.381 25.70 13.55 36.20 1.31
354 355 1.425448 CCTCCTTGGGCCCTTTATAGG 59.575 57.143 25.70 19.99 41.60 2.57
355 356 2.136026 CTCCTTGGGCCCTTTATAGGT 58.864 52.381 25.70 0.00 40.19 3.08
356 357 1.850345 TCCTTGGGCCCTTTATAGGTG 59.150 52.381 25.70 1.09 40.19 4.00
357 358 1.850345 CCTTGGGCCCTTTATAGGTGA 59.150 52.381 25.70 0.00 40.19 4.02
358 359 2.447047 CCTTGGGCCCTTTATAGGTGAT 59.553 50.000 25.70 0.00 40.19 3.06
359 360 3.655777 CCTTGGGCCCTTTATAGGTGATA 59.344 47.826 25.70 0.00 40.19 2.15
360 361 4.105697 CCTTGGGCCCTTTATAGGTGATAA 59.894 45.833 25.70 2.38 40.19 1.75
361 362 4.717279 TGGGCCCTTTATAGGTGATAAC 57.283 45.455 25.70 0.00 40.19 1.89
362 363 4.312487 TGGGCCCTTTATAGGTGATAACT 58.688 43.478 25.70 0.00 40.19 2.24
363 364 5.478844 TGGGCCCTTTATAGGTGATAACTA 58.521 41.667 25.70 0.00 40.19 2.24
364 365 6.095680 TGGGCCCTTTATAGGTGATAACTAT 58.904 40.000 25.70 0.00 40.19 2.12
365 366 6.564927 TGGGCCCTTTATAGGTGATAACTATT 59.435 38.462 25.70 0.00 40.19 1.73
366 367 7.074494 TGGGCCCTTTATAGGTGATAACTATTT 59.926 37.037 25.70 0.00 40.19 1.40
367 368 7.610692 GGGCCCTTTATAGGTGATAACTATTTC 59.389 40.741 17.04 0.00 40.19 2.17
368 369 8.383947 GGCCCTTTATAGGTGATAACTATTTCT 58.616 37.037 0.00 0.00 40.19 2.52
369 370 9.794719 GCCCTTTATAGGTGATAACTATTTCTT 57.205 33.333 0.00 0.00 40.19 2.52
526 527 7.545362 TTCTAAGATTCTCATTGTAAGCAGC 57.455 36.000 0.00 0.00 0.00 5.25
531 532 6.824553 AGATTCTCATTGTAAGCAGCATAGA 58.175 36.000 0.00 0.00 0.00 1.98
532 533 6.705381 AGATTCTCATTGTAAGCAGCATAGAC 59.295 38.462 0.00 0.00 0.00 2.59
537 538 5.352293 TCATTGTAAGCAGCATAGACTGTTG 59.648 40.000 0.00 0.00 39.96 3.33
539 540 4.498241 TGTAAGCAGCATAGACTGTTGAG 58.502 43.478 0.00 0.00 38.26 3.02
541 542 3.692257 AGCAGCATAGACTGTTGAGTT 57.308 42.857 0.00 0.00 38.26 3.01
544 545 5.738909 AGCAGCATAGACTGTTGAGTTTAT 58.261 37.500 0.00 0.00 38.26 1.40
666 2665 0.793250 TGTGTGTGTGTGTGTCGTTG 59.207 50.000 0.00 0.00 0.00 4.10
760 2765 7.938563 TTCCAAACAAGCACAATTATTACAC 57.061 32.000 0.00 0.00 0.00 2.90
962 2980 3.691049 TTGGTGCTTGAGTTTCTTTCG 57.309 42.857 0.00 0.00 0.00 3.46
963 2981 2.912771 TGGTGCTTGAGTTTCTTTCGA 58.087 42.857 0.00 0.00 0.00 3.71
1016 3034 3.443681 TCAGAAATGAAAATTCTCGGGGC 59.556 43.478 0.00 0.00 34.99 5.80
1047 3065 8.131731 AGAAAGACTTTGTTTCTGCTATGTTTC 58.868 33.333 4.85 0.00 41.66 2.78
1071 3089 1.939838 GCAGTTTGTGGCGTAGTAGCT 60.940 52.381 0.00 0.00 37.29 3.32
1189 3207 9.743057 CTCATATTTGTTGTTTGAGTAAACCAA 57.257 29.630 0.00 0.00 44.37 3.67
1232 3250 5.050972 CGTTTCACCTTTGTAGACAGAAGAC 60.051 44.000 6.31 0.00 0.00 3.01
1368 3386 5.821516 ACCACGACACTTATTTTGAACAA 57.178 34.783 0.00 0.00 0.00 2.83
1429 3459 7.732222 TCCATGCTTTTCTTACCCAATATTT 57.268 32.000 0.00 0.00 0.00 1.40
1456 3486 8.739972 AGTCTTGCTTTGGTAATAAACAATAGG 58.260 33.333 0.00 0.00 0.00 2.57
1570 3603 9.275398 TGTATCAAACTAACGATTGTTTTAGGT 57.725 29.630 3.03 0.00 39.54 3.08
1610 3643 0.099968 CTTGCATGCAGATGGAACCG 59.900 55.000 21.50 0.00 35.19 4.44
1634 3667 3.181475 GCTCACATCCTATTGGACTCGAA 60.181 47.826 0.00 0.00 46.51 3.71
1788 3821 9.720769 AAATATACACAAGGAATATTACTCGGG 57.279 33.333 0.00 0.00 0.00 5.14
2054 4230 6.234920 TCGATATGAAGTCCCTTTTTGTCAA 58.765 36.000 0.00 0.00 0.00 3.18
2055 4231 6.148811 TCGATATGAAGTCCCTTTTTGTCAAC 59.851 38.462 0.00 0.00 0.00 3.18
2056 4232 6.149474 CGATATGAAGTCCCTTTTTGTCAACT 59.851 38.462 0.00 0.00 0.00 3.16
2057 4233 4.981806 TGAAGTCCCTTTTTGTCAACTG 57.018 40.909 0.00 0.00 0.00 3.16
2114 4294 5.352569 ACTTGTCGCAGAAATGGATAGAAAG 59.647 40.000 0.00 0.00 39.69 2.62
2115 4295 4.832248 TGTCGCAGAAATGGATAGAAAGT 58.168 39.130 0.00 0.00 39.69 2.66
2158 4338 9.524106 AAAATACGTCTACATACATCGATTTCA 57.476 29.630 0.00 0.00 0.00 2.69
2209 4389 8.747538 AATATAAATTTACCTCACTCACCCAC 57.252 34.615 0.00 0.00 0.00 4.61
2612 5106 9.047371 GCAAACTATATCCCTCTTCTTAAGTTC 57.953 37.037 1.63 0.00 0.00 3.01
2680 5174 0.033366 TCCATCACGTGACACACTGG 59.967 55.000 22.71 23.09 30.42 4.00
2721 5215 6.959871 GTGCCTTTTAGTAAAATACGAGCTTC 59.040 38.462 8.48 3.15 0.00 3.86
2796 5290 9.077885 TGTTCTAAGTTTGGCAAGATAAATTCT 57.922 29.630 0.00 0.00 35.70 2.40
3135 5662 6.542370 GCACAGTATAAACAACCTACCATGAT 59.458 38.462 0.00 0.00 0.00 2.45
3136 5663 7.067008 GCACAGTATAAACAACCTACCATGATT 59.933 37.037 0.00 0.00 0.00 2.57
3271 5799 2.275318 GGAGTTTCTCTCATCGCTTGG 58.725 52.381 0.00 0.00 44.40 3.61
3368 5896 0.460311 CCTAGGGTTAGGCAGTGACG 59.540 60.000 0.00 0.00 40.10 4.35
3369 5897 1.183549 CTAGGGTTAGGCAGTGACGT 58.816 55.000 0.00 0.00 0.00 4.34
3386 5914 6.257849 CAGTGACGTGTGCCAATATAATTACT 59.742 38.462 0.00 0.00 0.00 2.24
3445 5973 7.601073 TTCTCTAGTTTGCATGTCAACTATG 57.399 36.000 15.27 12.34 33.73 2.23
3455 5983 1.067142 TGTCAACTATGGCTCGTGGAC 60.067 52.381 0.00 0.00 35.20 4.02
3469 5997 1.694525 TGGACACCAGTGTTCCCCA 60.695 57.895 6.75 6.28 45.05 4.96
3597 6128 3.456380 AAAACTGTGATATGGCAGGGT 57.544 42.857 0.00 0.00 37.07 4.34
3651 6182 2.158928 TGAATAATTGGGCTTGCCATGC 60.159 45.455 14.04 0.00 0.00 4.06
3706 6237 7.010606 TGTTAGAAACATAATTTACACACGCG 58.989 34.615 3.53 3.53 36.25 6.01
3707 6238 4.399978 AGAAACATAATTTACACACGCGC 58.600 39.130 5.73 0.00 0.00 6.86
3708 6239 2.429213 ACATAATTTACACACGCGCG 57.571 45.000 30.96 30.96 0.00 6.86
3709 6240 1.101454 CATAATTTACACACGCGCGC 58.899 50.000 32.58 23.91 0.00 6.86
3754 6285 4.648762 CAGAGAGAGAGAGAGAGAGAGAGT 59.351 50.000 0.00 0.00 0.00 3.24
3756 6287 4.357325 AGAGAGAGAGAGAGAGAGAGTGT 58.643 47.826 0.00 0.00 0.00 3.55
3758 6289 3.840666 AGAGAGAGAGAGAGAGAGTGTGT 59.159 47.826 0.00 0.00 0.00 3.72
3759 6290 3.935203 GAGAGAGAGAGAGAGAGTGTGTG 59.065 52.174 0.00 0.00 0.00 3.82
3760 6291 3.582647 AGAGAGAGAGAGAGAGTGTGTGA 59.417 47.826 0.00 0.00 0.00 3.58
3761 6292 3.935203 GAGAGAGAGAGAGAGTGTGTGAG 59.065 52.174 0.00 0.00 0.00 3.51
3762 6293 3.582647 AGAGAGAGAGAGAGTGTGTGAGA 59.417 47.826 0.00 0.00 0.00 3.27
3763 6294 3.935203 GAGAGAGAGAGAGTGTGTGAGAG 59.065 52.174 0.00 0.00 0.00 3.20
3764 6295 3.582647 AGAGAGAGAGAGTGTGTGAGAGA 59.417 47.826 0.00 0.00 0.00 3.10
3765 6296 3.935203 GAGAGAGAGAGTGTGTGAGAGAG 59.065 52.174 0.00 0.00 0.00 3.20
3766 6297 3.582647 AGAGAGAGAGTGTGTGAGAGAGA 59.417 47.826 0.00 0.00 0.00 3.10
3767 6298 3.935203 GAGAGAGAGTGTGTGAGAGAGAG 59.065 52.174 0.00 0.00 0.00 3.20
3768 6299 3.582647 AGAGAGAGTGTGTGAGAGAGAGA 59.417 47.826 0.00 0.00 0.00 3.10
3769 6300 3.935203 GAGAGAGTGTGTGAGAGAGAGAG 59.065 52.174 0.00 0.00 0.00 3.20
3770 6301 3.582647 AGAGAGTGTGTGAGAGAGAGAGA 59.417 47.826 0.00 0.00 0.00 3.10
3771 6302 3.935203 GAGAGTGTGTGAGAGAGAGAGAG 59.065 52.174 0.00 0.00 0.00 3.20
3772 6303 3.582647 AGAGTGTGTGAGAGAGAGAGAGA 59.417 47.826 0.00 0.00 0.00 3.10
3773 6304 3.935203 GAGTGTGTGAGAGAGAGAGAGAG 59.065 52.174 0.00 0.00 0.00 3.20
3774 6305 3.327757 AGTGTGTGAGAGAGAGAGAGAGT 59.672 47.826 0.00 0.00 0.00 3.24
3775 6306 3.436704 GTGTGTGAGAGAGAGAGAGAGTG 59.563 52.174 0.00 0.00 0.00 3.51
3776 6307 3.326297 TGTGTGAGAGAGAGAGAGAGTGA 59.674 47.826 0.00 0.00 0.00 3.41
3777 6308 3.935203 GTGTGAGAGAGAGAGAGAGTGAG 59.065 52.174 0.00 0.00 0.00 3.51
3778 6309 3.837731 TGTGAGAGAGAGAGAGAGTGAGA 59.162 47.826 0.00 0.00 0.00 3.27
3779 6310 4.081476 TGTGAGAGAGAGAGAGAGTGAGAG 60.081 50.000 0.00 0.00 0.00 3.20
3780 6311 4.160439 GTGAGAGAGAGAGAGAGTGAGAGA 59.840 50.000 0.00 0.00 0.00 3.10
3781 6312 4.403752 TGAGAGAGAGAGAGAGTGAGAGAG 59.596 50.000 0.00 0.00 0.00 3.20
3782 6313 4.614475 AGAGAGAGAGAGAGTGAGAGAGA 58.386 47.826 0.00 0.00 0.00 3.10
3783 6314 4.648762 AGAGAGAGAGAGAGTGAGAGAGAG 59.351 50.000 0.00 0.00 0.00 3.20
3784 6315 4.614475 AGAGAGAGAGAGTGAGAGAGAGA 58.386 47.826 0.00 0.00 0.00 3.10
3785 6316 4.648762 AGAGAGAGAGAGTGAGAGAGAGAG 59.351 50.000 0.00 0.00 0.00 3.20
3946 6480 7.148523 CGGGACTAGGAAAGTTACATGTTTTAC 60.149 40.741 2.30 0.00 39.07 2.01
4018 6552 6.521151 AAGCTCAATTTACTGAGGGAAATG 57.479 37.500 3.00 0.00 42.68 2.32
4134 6669 2.096909 CGGCGGTTAATGTCGATTCATC 60.097 50.000 0.00 0.00 36.32 2.92
4135 6670 3.131396 GGCGGTTAATGTCGATTCATCT 58.869 45.455 0.00 0.00 0.00 2.90
4136 6671 3.560068 GGCGGTTAATGTCGATTCATCTT 59.440 43.478 0.00 0.00 0.00 2.40
4137 6672 4.518217 GCGGTTAATGTCGATTCATCTTG 58.482 43.478 0.00 0.00 0.00 3.02
4138 6673 4.270084 GCGGTTAATGTCGATTCATCTTGA 59.730 41.667 0.00 0.00 0.00 3.02
4139 6674 5.050091 GCGGTTAATGTCGATTCATCTTGAT 60.050 40.000 0.00 0.00 0.00 2.57
4140 6675 6.511767 GCGGTTAATGTCGATTCATCTTGATT 60.512 38.462 0.00 0.00 0.00 2.57
4141 6676 7.065894 CGGTTAATGTCGATTCATCTTGATTC 58.934 38.462 0.00 0.00 0.00 2.52
4142 6677 7.254421 CGGTTAATGTCGATTCATCTTGATTCA 60.254 37.037 0.00 0.00 29.77 2.57
4143 6678 8.562892 GGTTAATGTCGATTCATCTTGATTCAT 58.437 33.333 0.00 0.00 29.77 2.57
4270 6833 3.628008 ACTTCTCGGGTTGGAACTTTTT 58.372 40.909 0.00 0.00 0.00 1.94
4319 6882 1.749063 GGGTAAAATTCGGCAAGGAGG 59.251 52.381 0.00 0.00 0.00 4.30
4473 7036 2.102252 CTGCTTCAGAGGGAGATGGTAC 59.898 54.545 0.00 0.00 32.44 3.34
4902 7467 6.366332 CGATTAGATCAAAATTCCGAGGGTAG 59.634 42.308 0.00 0.00 0.00 3.18
4906 7471 2.645797 TCAAAATTCCGAGGGTAGGGTT 59.354 45.455 0.00 0.00 0.00 4.11
5079 7644 6.148315 TGAAACTGAGCATTGAGATTGTACAG 59.852 38.462 0.00 0.00 0.00 2.74
5232 7801 2.410262 CGAGATGTGAAACGACAGTTGC 60.410 50.000 0.00 0.00 42.39 4.17
5333 9224 9.195411 GAAATATGATGCTGAAAACTGTGAAAA 57.805 29.630 0.00 0.00 0.00 2.29
5417 9308 0.179000 CTCAGCCCCCATACTGTGAC 59.821 60.000 0.00 0.00 35.37 3.67
5501 9392 2.584791 CTTTTGGCGTGCATCACTAAC 58.415 47.619 0.00 0.00 31.34 2.34
5536 9427 5.879777 TGAGCTCGAACATGAAATATTTCCA 59.120 36.000 22.42 12.60 36.36 3.53
5547 9438 8.090214 ACATGAAATATTTCCAAACTCCAAGTG 58.910 33.333 22.42 7.66 36.36 3.16
5552 9526 3.799281 TTCCAAACTCCAAGTGCTTTG 57.201 42.857 0.00 0.00 36.50 2.77
5650 9624 1.281577 TGGCTCATTCATGTGCTACCA 59.718 47.619 12.32 1.76 44.28 3.25
5651 9625 1.672881 GGCTCATTCATGTGCTACCAC 59.327 52.381 12.32 0.00 44.28 4.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.692406 ACGTGGAGCGGGTCTTCC 61.692 66.667 7.19 0.00 46.52 3.46
24 25 2.430382 TTCACGTGGAGCGGGTCTTC 62.430 60.000 17.00 0.29 45.75 2.87
25 26 2.436087 CTTCACGTGGAGCGGGTCTT 62.436 60.000 17.00 0.00 45.75 3.01
26 27 2.915659 TTCACGTGGAGCGGGTCT 60.916 61.111 17.00 0.00 45.75 3.85
27 28 2.432628 CTTCACGTGGAGCGGGTC 60.433 66.667 17.00 0.00 45.75 4.46
28 29 4.003788 CCTTCACGTGGAGCGGGT 62.004 66.667 19.05 0.00 45.75 5.28
30 31 2.738521 CACCTTCACGTGGAGCGG 60.739 66.667 19.05 9.54 46.52 5.52
32 33 3.050275 GGCACCTTCACGTGGAGC 61.050 66.667 19.05 11.15 39.81 4.70
33 34 1.669115 CAGGCACCTTCACGTGGAG 60.669 63.158 17.51 17.51 34.16 3.86
34 35 2.377628 GACAGGCACCTTCACGTGGA 62.378 60.000 17.00 5.89 34.16 4.02
35 36 1.961277 GACAGGCACCTTCACGTGG 60.961 63.158 17.00 1.58 34.16 4.94
36 37 2.310233 CGACAGGCACCTTCACGTG 61.310 63.158 9.94 9.94 36.80 4.49
37 38 2.029073 CGACAGGCACCTTCACGT 59.971 61.111 0.00 0.00 0.00 4.49
38 39 2.029073 ACGACAGGCACCTTCACG 59.971 61.111 0.00 0.00 0.00 4.35
39 40 1.961277 CCACGACAGGCACCTTCAC 60.961 63.158 0.00 0.00 0.00 3.18
40 41 2.425592 CCACGACAGGCACCTTCA 59.574 61.111 0.00 0.00 0.00 3.02
41 42 2.358737 CCCACGACAGGCACCTTC 60.359 66.667 0.00 0.00 0.00 3.46
42 43 3.953775 CCCCACGACAGGCACCTT 61.954 66.667 0.00 0.00 0.00 3.50
127 128 3.081409 AACATCCTCCCCCGTCCG 61.081 66.667 0.00 0.00 0.00 4.79
128 129 2.908796 GAACATCCTCCCCCGTCC 59.091 66.667 0.00 0.00 0.00 4.79
129 130 2.499685 CGAACATCCTCCCCCGTC 59.500 66.667 0.00 0.00 0.00 4.79
130 131 3.081409 CCGAACATCCTCCCCCGT 61.081 66.667 0.00 0.00 0.00 5.28
131 132 4.547367 GCCGAACATCCTCCCCCG 62.547 72.222 0.00 0.00 0.00 5.73
132 133 4.547367 CGCCGAACATCCTCCCCC 62.547 72.222 0.00 0.00 0.00 5.40
133 134 4.547367 CCGCCGAACATCCTCCCC 62.547 72.222 0.00 0.00 0.00 4.81
135 136 3.682292 AAGCCGCCGAACATCCTCC 62.682 63.158 0.00 0.00 0.00 4.30
136 137 2.125106 AAGCCGCCGAACATCCTC 60.125 61.111 0.00 0.00 0.00 3.71
137 138 2.125106 GAAGCCGCCGAACATCCT 60.125 61.111 0.00 0.00 0.00 3.24
138 139 2.125106 AGAAGCCGCCGAACATCC 60.125 61.111 0.00 0.00 0.00 3.51
139 140 2.464459 CCAGAAGCCGCCGAACATC 61.464 63.158 0.00 0.00 0.00 3.06
140 141 2.436646 CCAGAAGCCGCCGAACAT 60.437 61.111 0.00 0.00 0.00 2.71
141 142 2.951475 AAACCAGAAGCCGCCGAACA 62.951 55.000 0.00 0.00 0.00 3.18
142 143 0.952010 TAAACCAGAAGCCGCCGAAC 60.952 55.000 0.00 0.00 0.00 3.95
143 144 0.672401 CTAAACCAGAAGCCGCCGAA 60.672 55.000 0.00 0.00 0.00 4.30
144 145 1.079405 CTAAACCAGAAGCCGCCGA 60.079 57.895 0.00 0.00 0.00 5.54
145 146 2.750888 GCTAAACCAGAAGCCGCCG 61.751 63.158 0.00 0.00 32.40 6.46
146 147 2.750888 CGCTAAACCAGAAGCCGCC 61.751 63.158 0.00 0.00 35.22 6.13
147 148 1.090052 ATCGCTAAACCAGAAGCCGC 61.090 55.000 0.00 0.00 35.22 6.53
148 149 1.369625 AATCGCTAAACCAGAAGCCG 58.630 50.000 0.00 0.00 35.22 5.52
149 150 2.159379 CCAAATCGCTAAACCAGAAGCC 60.159 50.000 0.00 0.00 35.22 4.35
150 151 2.159379 CCCAAATCGCTAAACCAGAAGC 60.159 50.000 0.00 0.00 35.33 3.86
151 152 2.423538 CCCCAAATCGCTAAACCAGAAG 59.576 50.000 0.00 0.00 0.00 2.85
152 153 2.442413 CCCCAAATCGCTAAACCAGAA 58.558 47.619 0.00 0.00 0.00 3.02
153 154 1.340600 CCCCCAAATCGCTAAACCAGA 60.341 52.381 0.00 0.00 0.00 3.86
154 155 1.102978 CCCCCAAATCGCTAAACCAG 58.897 55.000 0.00 0.00 0.00 4.00
155 156 0.968393 GCCCCCAAATCGCTAAACCA 60.968 55.000 0.00 0.00 0.00 3.67
156 157 1.672854 GGCCCCCAAATCGCTAAACC 61.673 60.000 0.00 0.00 0.00 3.27
157 158 0.683179 AGGCCCCCAAATCGCTAAAC 60.683 55.000 0.00 0.00 0.00 2.01
158 159 0.395173 GAGGCCCCCAAATCGCTAAA 60.395 55.000 0.00 0.00 0.00 1.85
159 160 1.226262 GAGGCCCCCAAATCGCTAA 59.774 57.895 0.00 0.00 0.00 3.09
160 161 2.752807 GGAGGCCCCCAAATCGCTA 61.753 63.158 0.00 0.00 0.00 4.26
161 162 4.129148 GGAGGCCCCCAAATCGCT 62.129 66.667 0.00 0.00 0.00 4.93
163 164 4.875713 CCGGAGGCCCCCAAATCG 62.876 72.222 3.33 0.00 46.14 3.34
198 199 1.617947 CGCTAAAGAGCCTCCTGGGT 61.618 60.000 0.00 0.00 46.86 4.51
199 200 1.144936 CGCTAAAGAGCCTCCTGGG 59.855 63.158 0.00 0.00 46.86 4.45
200 201 0.755686 ATCGCTAAAGAGCCTCCTGG 59.244 55.000 0.00 0.00 46.86 4.45
201 202 2.478831 GAATCGCTAAAGAGCCTCCTG 58.521 52.381 0.00 0.00 46.86 3.86
202 203 1.067821 CGAATCGCTAAAGAGCCTCCT 59.932 52.381 0.00 0.00 46.86 3.69
203 204 1.492720 CGAATCGCTAAAGAGCCTCC 58.507 55.000 0.00 0.00 46.86 4.30
204 205 1.492720 CCGAATCGCTAAAGAGCCTC 58.507 55.000 0.00 0.00 46.86 4.70
205 206 0.530870 GCCGAATCGCTAAAGAGCCT 60.531 55.000 0.00 0.00 46.86 4.58
206 207 0.810031 TGCCGAATCGCTAAAGAGCC 60.810 55.000 0.00 0.00 46.86 4.70
207 208 1.221414 ATGCCGAATCGCTAAAGAGC 58.779 50.000 0.00 0.00 46.00 4.09
208 209 3.643763 AGTATGCCGAATCGCTAAAGAG 58.356 45.455 0.00 0.00 0.00 2.85
209 210 3.552273 GGAGTATGCCGAATCGCTAAAGA 60.552 47.826 0.00 0.00 0.00 2.52
210 211 2.731976 GGAGTATGCCGAATCGCTAAAG 59.268 50.000 0.00 0.00 0.00 1.85
211 212 2.547218 GGGAGTATGCCGAATCGCTAAA 60.547 50.000 0.00 0.00 36.28 1.85
212 213 1.000506 GGGAGTATGCCGAATCGCTAA 59.999 52.381 0.00 0.00 36.28 3.09
213 214 0.601558 GGGAGTATGCCGAATCGCTA 59.398 55.000 0.00 0.00 36.28 4.26
214 215 1.367840 GGGAGTATGCCGAATCGCT 59.632 57.895 0.00 0.00 36.28 4.93
215 216 3.952811 GGGAGTATGCCGAATCGC 58.047 61.111 0.00 0.00 36.28 4.58
222 223 2.293170 GCTGAAAGAAGGGAGTATGCC 58.707 52.381 0.00 0.00 43.22 4.40
223 224 2.941720 CTGCTGAAAGAAGGGAGTATGC 59.058 50.000 0.00 0.00 35.25 3.14
224 225 2.941720 GCTGCTGAAAGAAGGGAGTATG 59.058 50.000 0.00 0.00 41.26 2.39
225 226 2.573462 TGCTGCTGAAAGAAGGGAGTAT 59.427 45.455 0.00 0.00 41.26 2.12
226 227 1.977854 TGCTGCTGAAAGAAGGGAGTA 59.022 47.619 0.00 0.00 41.26 2.59
227 228 0.767375 TGCTGCTGAAAGAAGGGAGT 59.233 50.000 0.00 0.00 41.26 3.85
228 229 1.811359 CTTGCTGCTGAAAGAAGGGAG 59.189 52.381 5.38 0.00 41.26 4.30
229 230 1.901591 CTTGCTGCTGAAAGAAGGGA 58.098 50.000 5.38 0.00 41.26 4.20
230 231 0.243095 GCTTGCTGCTGAAAGAAGGG 59.757 55.000 15.19 0.00 41.26 3.95
231 232 3.788775 GCTTGCTGCTGAAAGAAGG 57.211 52.632 15.19 0.00 41.26 3.46
241 242 4.061596 CCTACCTATTAGAAGCTTGCTGC 58.938 47.826 2.10 0.00 43.29 5.25
242 243 4.061596 GCCTACCTATTAGAAGCTTGCTG 58.938 47.826 2.10 0.00 0.00 4.41
243 244 3.711704 TGCCTACCTATTAGAAGCTTGCT 59.288 43.478 2.10 3.53 0.00 3.91
244 245 4.073293 TGCCTACCTATTAGAAGCTTGC 57.927 45.455 2.10 0.00 0.00 4.01
245 246 7.391148 TTTTTGCCTACCTATTAGAAGCTTG 57.609 36.000 2.10 0.00 0.00 4.01
246 247 9.695155 TTATTTTTGCCTACCTATTAGAAGCTT 57.305 29.630 0.00 0.00 0.00 3.74
247 248 9.868160 ATTATTTTTGCCTACCTATTAGAAGCT 57.132 29.630 0.00 0.00 0.00 3.74
256 257 8.479689 GCCCTTTTAATTATTTTTGCCTACCTA 58.520 33.333 0.00 0.00 0.00 3.08
257 258 7.182026 AGCCCTTTTAATTATTTTTGCCTACCT 59.818 33.333 0.00 0.00 0.00 3.08
258 259 7.335627 AGCCCTTTTAATTATTTTTGCCTACC 58.664 34.615 0.00 0.00 0.00 3.18
259 260 9.878667 TTAGCCCTTTTAATTATTTTTGCCTAC 57.121 29.630 0.00 0.00 0.00 3.18
261 262 9.226606 GTTTAGCCCTTTTAATTATTTTTGCCT 57.773 29.630 0.00 0.00 0.00 4.75
262 263 9.226606 AGTTTAGCCCTTTTAATTATTTTTGCC 57.773 29.630 0.00 0.00 0.00 4.52
273 274 9.695155 AGATGCTATAAAGTTTAGCCCTTTTAA 57.305 29.630 7.70 0.00 41.10 1.52
274 275 9.120538 CAGATGCTATAAAGTTTAGCCCTTTTA 57.879 33.333 7.70 0.00 41.10 1.52
275 276 7.068716 CCAGATGCTATAAAGTTTAGCCCTTTT 59.931 37.037 7.70 0.00 41.10 2.27
276 277 6.547510 CCAGATGCTATAAAGTTTAGCCCTTT 59.452 38.462 7.70 0.00 41.10 3.11
277 278 6.064717 CCAGATGCTATAAAGTTTAGCCCTT 58.935 40.000 7.70 0.00 41.10 3.95
278 279 5.369699 TCCAGATGCTATAAAGTTTAGCCCT 59.630 40.000 7.70 3.27 41.10 5.19
279 280 5.621193 TCCAGATGCTATAAAGTTTAGCCC 58.379 41.667 7.70 1.35 41.10 5.19
280 281 6.372937 GGATCCAGATGCTATAAAGTTTAGCC 59.627 42.308 6.95 0.00 41.10 3.93
281 282 6.091441 CGGATCCAGATGCTATAAAGTTTAGC 59.909 42.308 13.41 3.79 41.95 3.09
282 283 7.155328 ACGGATCCAGATGCTATAAAGTTTAG 58.845 38.462 13.41 0.00 0.00 1.85
283 284 7.062749 ACGGATCCAGATGCTATAAAGTTTA 57.937 36.000 13.41 0.00 0.00 2.01
284 285 5.930135 ACGGATCCAGATGCTATAAAGTTT 58.070 37.500 13.41 0.00 0.00 2.66
285 286 5.552870 ACGGATCCAGATGCTATAAAGTT 57.447 39.130 13.41 0.00 0.00 2.66
286 287 6.493802 TCTTACGGATCCAGATGCTATAAAGT 59.506 38.462 13.41 0.00 0.00 2.66
287 288 6.925211 TCTTACGGATCCAGATGCTATAAAG 58.075 40.000 13.41 0.30 0.00 1.85
288 289 6.911250 TCTTACGGATCCAGATGCTATAAA 57.089 37.500 13.41 0.00 0.00 1.40
289 290 7.101652 GATCTTACGGATCCAGATGCTATAA 57.898 40.000 15.88 1.54 43.65 0.98
290 291 6.701145 GATCTTACGGATCCAGATGCTATA 57.299 41.667 15.88 0.00 43.65 1.31
291 292 5.590530 GATCTTACGGATCCAGATGCTAT 57.409 43.478 15.88 0.00 43.65 2.97
293 294 3.951775 GATCTTACGGATCCAGATGCT 57.048 47.619 15.88 0.00 43.65 3.79
302 303 5.897824 TCCTCCTAAACTTGATCTTACGGAT 59.102 40.000 0.00 0.00 37.37 4.18
303 304 5.266788 TCCTCCTAAACTTGATCTTACGGA 58.733 41.667 0.00 0.00 0.00 4.69
304 305 5.452077 CCTCCTCCTAAACTTGATCTTACGG 60.452 48.000 0.00 0.00 0.00 4.02
305 306 5.360144 TCCTCCTCCTAAACTTGATCTTACG 59.640 44.000 0.00 0.00 0.00 3.18
306 307 6.183360 CCTCCTCCTCCTAAACTTGATCTTAC 60.183 46.154 0.00 0.00 0.00 2.34
307 308 5.900123 CCTCCTCCTCCTAAACTTGATCTTA 59.100 44.000 0.00 0.00 0.00 2.10
308 309 4.719273 CCTCCTCCTCCTAAACTTGATCTT 59.281 45.833 0.00 0.00 0.00 2.40
309 310 4.265078 ACCTCCTCCTCCTAAACTTGATCT 60.265 45.833 0.00 0.00 0.00 2.75
310 311 4.034410 ACCTCCTCCTCCTAAACTTGATC 58.966 47.826 0.00 0.00 0.00 2.92
311 312 4.081695 ACCTCCTCCTCCTAAACTTGAT 57.918 45.455 0.00 0.00 0.00 2.57
312 313 3.562108 ACCTCCTCCTCCTAAACTTGA 57.438 47.619 0.00 0.00 0.00 3.02
313 314 3.055021 GGAACCTCCTCCTCCTAAACTTG 60.055 52.174 0.00 0.00 32.53 3.16
314 315 3.181394 AGGAACCTCCTCCTCCTAAACTT 60.181 47.826 0.00 0.00 45.66 2.66
315 316 2.387510 AGGAACCTCCTCCTCCTAAACT 59.612 50.000 0.00 0.00 45.66 2.66
316 317 2.835389 AGGAACCTCCTCCTCCTAAAC 58.165 52.381 0.00 0.00 45.66 2.01
330 331 2.094170 AAAGGGCCCAAGGAGGAACC 62.094 60.000 27.56 0.00 41.22 3.62
331 332 0.702316 TAAAGGGCCCAAGGAGGAAC 59.298 55.000 27.56 0.00 41.22 3.62
332 333 1.693799 ATAAAGGGCCCAAGGAGGAA 58.306 50.000 27.56 0.00 41.22 3.36
333 334 2.418669 CTATAAAGGGCCCAAGGAGGA 58.581 52.381 27.56 1.23 41.22 3.71
334 335 1.425448 CCTATAAAGGGCCCAAGGAGG 59.575 57.143 27.56 19.18 39.48 4.30
335 336 2.959465 CCTATAAAGGGCCCAAGGAG 57.041 55.000 27.56 13.94 39.48 3.69
392 393 8.870879 GTGCTTAAAGAAAGACTACGTGAATAT 58.129 33.333 0.00 0.00 37.38 1.28
393 394 7.868922 TGTGCTTAAAGAAAGACTACGTGAATA 59.131 33.333 0.00 0.00 37.38 1.75
394 395 6.704493 TGTGCTTAAAGAAAGACTACGTGAAT 59.296 34.615 0.00 0.00 37.38 2.57
395 396 6.019318 GTGTGCTTAAAGAAAGACTACGTGAA 60.019 38.462 0.00 0.00 37.38 3.18
396 397 5.461078 GTGTGCTTAAAGAAAGACTACGTGA 59.539 40.000 0.00 0.00 37.38 4.35
397 398 5.609696 CGTGTGCTTAAAGAAAGACTACGTG 60.610 44.000 0.00 0.00 37.38 4.49
398 399 4.443394 CGTGTGCTTAAAGAAAGACTACGT 59.557 41.667 0.00 0.00 37.38 3.57
463 464 8.853126 CAGCTATCTTGATTGATAAAATTCCCA 58.147 33.333 0.00 0.00 0.00 4.37
523 524 7.965107 GGAAAATAAACTCAACAGTCTATGCTG 59.035 37.037 0.00 0.00 41.92 4.41
585 586 9.562408 CTATAGAATAAGTAGTGAGTGTCCTCA 57.438 37.037 0.00 0.00 45.44 3.86
631 632 5.008613 ACACACACACACATTATGAAAGACC 59.991 40.000 0.00 0.00 0.00 3.85
688 2693 8.411991 TCATGGCATGACATTGATATATTGTT 57.588 30.769 25.63 0.00 33.59 2.83
831 2849 8.407832 TGCACATTAATGACCTCATCAATAAAG 58.592 33.333 22.16 0.00 41.93 1.85
875 2893 9.125026 ACACAAAAATCTAGAATGTTCAGTTCT 57.875 29.630 0.00 0.00 39.19 3.01
939 2957 5.529430 TCGAAAGAAACTCAAGCACCAAATA 59.471 36.000 0.00 0.00 37.03 1.40
942 2960 3.275143 TCGAAAGAAACTCAAGCACCAA 58.725 40.909 0.00 0.00 37.03 3.67
943 2961 2.872245 CTCGAAAGAAACTCAAGCACCA 59.128 45.455 0.00 0.00 41.32 4.17
962 2980 7.228706 TGGACTCTATTGTTTTTGTTTCCTCTC 59.771 37.037 0.00 0.00 0.00 3.20
963 2981 7.060421 TGGACTCTATTGTTTTTGTTTCCTCT 58.940 34.615 0.00 0.00 0.00 3.69
1047 3065 1.266718 ACTACGCCACAAACTGCAATG 59.733 47.619 0.00 0.00 0.00 2.82
1071 3089 6.890268 GCCTTCCTCCTTTTCTATTTTCCTTA 59.110 38.462 0.00 0.00 0.00 2.69
1189 3207 6.432783 TGAAACGGTTCATGGTTATCTCAAAT 59.567 34.615 12.93 0.00 38.88 2.32
1232 3250 5.639757 TCTATGCAATCAAAAATGTCACCG 58.360 37.500 0.00 0.00 0.00 4.94
1368 3386 7.942894 ACTTAACTGTAAAAATGCTACTCCCTT 59.057 33.333 0.00 0.00 0.00 3.95
1558 3588 8.124199 TCGTTTGTTAGTTCACCTAAAACAATC 58.876 33.333 0.00 0.00 37.39 2.67
1560 3590 7.119553 AGTCGTTTGTTAGTTCACCTAAAACAA 59.880 33.333 0.00 0.00 37.39 2.83
1561 3591 6.594937 AGTCGTTTGTTAGTTCACCTAAAACA 59.405 34.615 0.00 0.00 37.39 2.83
1562 3592 7.008440 AGTCGTTTGTTAGTTCACCTAAAAC 57.992 36.000 0.00 0.00 37.39 2.43
1570 3603 6.539324 CAAGTCAAAGTCGTTTGTTAGTTCA 58.461 36.000 0.00 0.00 43.22 3.18
1634 3667 3.384168 TGTATCTGGTATGGAGTTGCCT 58.616 45.455 0.00 0.00 37.63 4.75
1788 3821 6.818416 CCGAAGCGGTGTTATTCTTATTATC 58.182 40.000 0.00 0.00 42.73 1.75
2144 4324 4.755388 CTTGTCGCTGAAATCGATGTATG 58.245 43.478 0.00 0.00 38.29 2.39
2152 4332 2.842485 CGAATTGCTTGTCGCTGAAATC 59.158 45.455 0.00 0.00 40.11 2.17
2158 4338 0.392998 ATCCCGAATTGCTTGTCGCT 60.393 50.000 0.00 0.00 40.11 4.93
2167 4347 2.664402 ATTCCCTCCATCCCGAATTG 57.336 50.000 0.00 0.00 0.00 2.32
2562 4768 7.222999 TGCATGCATGTATACAACAATTTGATG 59.777 33.333 26.79 4.16 42.70 3.07
2580 5074 5.252586 AGAGGGATATAGTTTGCATGCAT 57.747 39.130 23.37 9.62 0.00 3.96
2680 5174 0.984109 GCACACATGCGCAAACATAC 59.016 50.000 17.11 0.00 43.33 2.39
2721 5215 5.645067 TGGAATGTATCTCAAACAAGCAGAG 59.355 40.000 0.00 0.00 0.00 3.35
3110 5604 5.878116 TCATGGTAGGTTGTTTATACTGTGC 59.122 40.000 0.00 0.00 0.00 4.57
3237 5765 8.786898 TGAGAGAAACTCCACAAAAATATCAAG 58.213 33.333 0.00 0.00 44.34 3.02
3251 5779 2.275318 CCAAGCGATGAGAGAAACTCC 58.725 52.381 0.00 0.00 44.34 3.85
3328 5856 3.550030 GGTTTTGTTGATGGTCTTGACCG 60.550 47.826 14.24 0.00 0.00 4.79
3344 5872 3.081804 CACTGCCTAACCCTAGGTTTTG 58.918 50.000 8.29 0.19 44.33 2.44
3368 5896 9.450807 GTGAAATCAGTAATTATATTGGCACAC 57.549 33.333 0.00 0.00 39.29 3.82
3369 5897 9.183368 TGTGAAATCAGTAATTATATTGGCACA 57.817 29.630 14.61 14.61 0.00 4.57
3437 5965 1.067142 GTGTCCACGAGCCATAGTTGA 60.067 52.381 0.00 0.00 0.00 3.18
3445 5973 2.357517 CACTGGTGTCCACGAGCC 60.358 66.667 9.06 0.00 40.25 4.70
3455 5983 0.609131 GACCATGGGGAACACTGGTG 60.609 60.000 18.09 0.00 39.49 4.17
3583 6114 2.418368 TGTTCACCCTGCCATATCAC 57.582 50.000 0.00 0.00 0.00 3.06
3589 6120 0.409092 ATTCCATGTTCACCCTGCCA 59.591 50.000 0.00 0.00 0.00 4.92
3597 6128 5.541953 ATCTCTCATCGATTCCATGTTCA 57.458 39.130 0.00 0.00 0.00 3.18
3711 6242 3.858989 TGTGTGTGTGTGTGCGCG 61.859 61.111 0.00 0.00 0.00 6.86
3712 6243 2.277247 GTGTGTGTGTGTGTGCGC 60.277 61.111 0.00 0.00 0.00 6.09
3713 6244 1.225991 GTGTGTGTGTGTGTGTGCG 60.226 57.895 0.00 0.00 0.00 5.34
3714 6245 0.179192 CTGTGTGTGTGTGTGTGTGC 60.179 55.000 0.00 0.00 0.00 4.57
3754 6285 3.326297 TCACTCTCTCTCTCTCTCACACA 59.674 47.826 0.00 0.00 0.00 3.72
3756 6287 3.837731 TCTCACTCTCTCTCTCTCTCACA 59.162 47.826 0.00 0.00 0.00 3.58
3758 6289 4.352893 TCTCTCACTCTCTCTCTCTCTCA 58.647 47.826 0.00 0.00 0.00 3.27
3759 6290 4.646945 TCTCTCTCACTCTCTCTCTCTCTC 59.353 50.000 0.00 0.00 0.00 3.20
3760 6291 4.614475 TCTCTCTCACTCTCTCTCTCTCT 58.386 47.826 0.00 0.00 0.00 3.10
3761 6292 4.646945 TCTCTCTCTCACTCTCTCTCTCTC 59.353 50.000 0.00 0.00 0.00 3.20
3762 6293 4.614475 TCTCTCTCTCACTCTCTCTCTCT 58.386 47.826 0.00 0.00 0.00 3.10
3763 6294 4.202202 CCTCTCTCTCTCACTCTCTCTCTC 60.202 54.167 0.00 0.00 0.00 3.20
3764 6295 3.708631 CCTCTCTCTCTCACTCTCTCTCT 59.291 52.174 0.00 0.00 0.00 3.10
3765 6296 3.452627 ACCTCTCTCTCTCACTCTCTCTC 59.547 52.174 0.00 0.00 0.00 3.20
3766 6297 3.454858 ACCTCTCTCTCTCACTCTCTCT 58.545 50.000 0.00 0.00 0.00 3.10
3767 6298 3.914426 ACCTCTCTCTCTCACTCTCTC 57.086 52.381 0.00 0.00 0.00 3.20
3768 6299 5.772393 TTAACCTCTCTCTCTCACTCTCT 57.228 43.478 0.00 0.00 0.00 3.10
3769 6300 7.280356 ACTATTAACCTCTCTCTCTCACTCTC 58.720 42.308 0.00 0.00 0.00 3.20
3770 6301 7.208064 ACTATTAACCTCTCTCTCTCACTCT 57.792 40.000 0.00 0.00 0.00 3.24
3771 6302 7.554835 TGAACTATTAACCTCTCTCTCTCACTC 59.445 40.741 0.00 0.00 0.00 3.51
3772 6303 7.338449 GTGAACTATTAACCTCTCTCTCTCACT 59.662 40.741 0.00 0.00 0.00 3.41
3773 6304 7.121463 TGTGAACTATTAACCTCTCTCTCTCAC 59.879 40.741 0.00 0.00 0.00 3.51
3774 6305 7.121463 GTGTGAACTATTAACCTCTCTCTCTCA 59.879 40.741 0.00 0.00 0.00 3.27
3775 6306 7.338449 AGTGTGAACTATTAACCTCTCTCTCTC 59.662 40.741 0.00 0.00 0.00 3.20
3776 6307 7.179269 AGTGTGAACTATTAACCTCTCTCTCT 58.821 38.462 0.00 0.00 0.00 3.10
3777 6308 7.399245 AGTGTGAACTATTAACCTCTCTCTC 57.601 40.000 0.00 0.00 0.00 3.20
3778 6309 7.889073 TGTAGTGTGAACTATTAACCTCTCTCT 59.111 37.037 0.00 0.00 0.00 3.10
3779 6310 8.053026 TGTAGTGTGAACTATTAACCTCTCTC 57.947 38.462 0.00 0.00 0.00 3.20
3780 6311 8.596781 ATGTAGTGTGAACTATTAACCTCTCT 57.403 34.615 0.00 0.00 0.00 3.10
3781 6312 9.088512 CAATGTAGTGTGAACTATTAACCTCTC 57.911 37.037 0.00 0.00 0.00 3.20
3782 6313 8.812972 TCAATGTAGTGTGAACTATTAACCTCT 58.187 33.333 0.00 0.00 0.00 3.69
3783 6314 8.870879 GTCAATGTAGTGTGAACTATTAACCTC 58.129 37.037 0.00 0.00 0.00 3.85
3784 6315 7.544566 CGTCAATGTAGTGTGAACTATTAACCT 59.455 37.037 0.00 0.00 0.00 3.50
3785 6316 7.543172 TCGTCAATGTAGTGTGAACTATTAACC 59.457 37.037 0.00 0.00 0.00 2.85
3946 6480 3.617540 TGTAATTGCACAACCGAACTG 57.382 42.857 0.00 0.00 0.00 3.16
4054 6589 5.009110 GGGCAAGAAAATCCTTACTATGAGC 59.991 44.000 0.00 0.00 0.00 4.26
4149 6684 8.230486 GTGACAAAAGTATTGGTACTGAAGATG 58.770 37.037 0.00 0.00 40.24 2.90
4319 6882 2.755650 CCAATATCCGACTACAGTGCC 58.244 52.381 0.00 0.00 0.00 5.01
4473 7036 2.703416 TGTTCTTCACATAGGCTGCTG 58.297 47.619 0.00 0.00 0.00 4.41
4758 7322 5.106555 CGATAAGAACACAAACTGAGGCAAT 60.107 40.000 0.00 0.00 0.00 3.56
4902 7467 0.539986 TCGATGCTAGGAACCAACCC 59.460 55.000 0.00 0.00 0.00 4.11
4906 7471 1.618837 GCCTATCGATGCTAGGAACCA 59.381 52.381 15.55 0.00 38.44 3.67
5013 7578 0.687757 GGGATCTTGCCTTTTCCCCC 60.688 60.000 0.00 0.00 41.75 5.40
5015 7580 1.937191 TTGGGATCTTGCCTTTTCCC 58.063 50.000 0.00 0.00 46.77 3.97
5016 7581 4.020307 TGAAATTGGGATCTTGCCTTTTCC 60.020 41.667 0.00 0.00 33.36 3.13
5017 7582 4.931601 GTGAAATTGGGATCTTGCCTTTTC 59.068 41.667 0.00 1.61 34.17 2.29
5024 7589 5.864418 ATGGATGTGAAATTGGGATCTTG 57.136 39.130 0.00 0.00 0.00 3.02
5079 7644 3.817647 AGCTCATTTGGTTGAGAAGTGAC 59.182 43.478 5.67 0.00 44.88 3.67
5148 7715 9.713713 GAGATCAGACATCACTACATAGTAGTA 57.286 37.037 9.29 0.65 34.13 1.82
5149 7716 7.386573 CGAGATCAGACATCACTACATAGTAGT 59.613 40.741 4.09 4.09 34.13 2.73
5150 7717 7.148490 CCGAGATCAGACATCACTACATAGTAG 60.148 44.444 0.00 2.79 34.13 2.57
5333 9224 8.697507 AAGATAAATCTGTTGTCTTCCAAACT 57.302 30.769 0.00 0.00 37.19 2.66
5501 9392 0.455005 TCGAGCTCACTCTGCATCAG 59.545 55.000 15.40 0.00 41.09 2.90
5510 9401 6.037610 GGAAATATTTCATGTTCGAGCTCACT 59.962 38.462 25.55 0.00 38.92 3.41
5536 9427 8.739972 CCTATATTTACAAAGCACTTGGAGTTT 58.260 33.333 3.89 0.00 39.56 2.66
5547 9438 7.686434 TCTGGTATCCCCTATATTTACAAAGC 58.314 38.462 0.00 0.00 0.00 3.51
5552 9526 7.624077 AGGACATCTGGTATCCCCTATATTTAC 59.376 40.741 0.00 0.00 32.47 2.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.