Multiple sequence alignment - TraesCS5A01G166100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G166100 chr5A 100.000 2709 0 0 1 2709 355073711 355071003 0.000000e+00 5003.0
1 TraesCS5A01G166100 chr5A 100.000 326 0 0 3035 3360 355070677 355070352 1.330000e-168 603.0
2 TraesCS5A01G166100 chr5A 78.414 227 35 10 52 273 312473919 312474136 5.850000e-28 135.0
3 TraesCS5A01G166100 chr5A 98.214 56 1 0 1 56 70498873 70498818 7.670000e-17 99.0
4 TraesCS5A01G166100 chr5D 94.739 2091 71 19 512 2577 267764476 267762400 0.000000e+00 3216.0
5 TraesCS5A01G166100 chr5D 82.061 262 28 10 3110 3360 267762089 267761836 4.390000e-49 206.0
6 TraesCS5A01G166100 chr5B 92.384 2232 96 36 512 2685 302755364 302753149 0.000000e+00 3112.0
7 TraesCS5A01G166100 chr5B 85.749 414 50 4 92 501 67328215 67328623 2.400000e-116 429.0
8 TraesCS5A01G166100 chr5B 83.862 347 25 16 3035 3360 302753282 302752946 5.450000e-78 302.0
9 TraesCS5A01G166100 chr5B 95.238 63 1 2 512 573 302755819 302755758 7.670000e-17 99.0
10 TraesCS5A01G166100 chr5B 96.429 56 2 0 2 57 462123186 462123131 3.570000e-15 93.5
11 TraesCS5A01G166100 chr1D 85.903 454 57 6 52 501 165472326 165472776 8.430000e-131 477.0
12 TraesCS5A01G166100 chr2B 85.210 453 61 5 53 501 20710189 20709739 8.490000e-126 460.0
13 TraesCS5A01G166100 chr3D 85.649 439 56 5 67 501 178404431 178403996 3.950000e-124 455.0
14 TraesCS5A01G166100 chr3D 85.455 440 51 9 67 501 586569026 586569457 2.380000e-121 446.0
15 TraesCS5A01G166100 chr3D 96.610 59 2 0 1 59 123664728 123664670 7.670000e-17 99.0
16 TraesCS5A01G166100 chr3D 96.429 56 2 0 2 57 614910425 614910480 3.570000e-15 93.5
17 TraesCS5A01G166100 chr3B 86.265 415 52 5 92 501 267223357 267223771 2.380000e-121 446.0
18 TraesCS5A01G166100 chr2D 87.968 374 37 5 111 480 331733525 331733894 5.150000e-118 435.0
19 TraesCS5A01G166100 chr6D 86.701 391 47 5 116 501 90442749 90442359 2.400000e-116 429.0
20 TraesCS5A01G166100 chr1B 83.080 461 71 6 54 508 283123092 283122633 2.410000e-111 412.0
21 TraesCS5A01G166100 chr4D 100.000 55 0 0 1 55 31757751 31757805 5.930000e-18 102.0
22 TraesCS5A01G166100 chr1A 96.429 56 2 0 1 56 574271981 574271926 3.570000e-15 93.5
23 TraesCS5A01G166100 chr1A 88.000 75 7 2 2 74 544732134 544732060 1.660000e-13 87.9
24 TraesCS5A01G166100 chr3A 83.505 97 12 4 1 95 488110356 488110262 1.660000e-13 87.9
25 TraesCS5A01G166100 chr3A 89.706 68 6 1 2 69 92270682 92270748 5.970000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G166100 chr5A 355070352 355073711 3359 True 2803 5003 100.000000 1 3360 2 chr5A.!!$R2 3359
1 TraesCS5A01G166100 chr5D 267761836 267764476 2640 True 1711 3216 88.400000 512 3360 2 chr5D.!!$R1 2848
2 TraesCS5A01G166100 chr5B 302752946 302755819 2873 True 1171 3112 90.494667 512 3360 3 chr5B.!!$R2 2848

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
172 173 0.033781 TACCTGGTTGCCACGTACAC 59.966 55.0 3.84 0.0 0.00 2.90 F
178 179 0.040781 GTTGCCACGTACACGCAATT 60.041 50.0 12.66 0.0 43.78 2.32 F
236 237 0.033781 TGTTTACCTAGTTGCCGCGT 59.966 50.0 4.92 0.0 0.00 6.01 F
345 346 0.179004 TGTGTGAGCGGGAAATGGTT 60.179 50.0 0.00 0.0 0.00 3.67 F
346 347 0.521735 GTGTGAGCGGGAAATGGTTC 59.478 55.0 0.00 0.0 0.00 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1911 2389 0.900182 ACGAGCTGGTCACATCCTGA 60.900 55.000 7.70 0.00 0.00 3.86 R
2187 2665 2.936912 GCAGCTGGAGTCGGACAGT 61.937 63.158 17.12 0.00 37.07 3.55 R
2217 2695 1.519455 CGAGCCGGCCTAGAAAGTG 60.519 63.158 26.15 0.00 0.00 3.16 R
2311 2789 8.695456 ACGCCTCCAATAAATTTCTGAATATTT 58.305 29.630 0.00 12.06 0.00 1.40 R
2394 2872 6.761714 CGTCAGTTCATTAGCCTTTTATAGGT 59.238 38.462 0.00 0.00 46.61 3.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.403866 AGAGCTTAGATGTGACATCCTTAG 57.596 41.667 21.05 15.92 0.00 2.18
24 25 6.132658 AGAGCTTAGATGTGACATCCTTAGA 58.867 40.000 21.05 3.38 0.00 2.10
25 26 6.609212 AGAGCTTAGATGTGACATCCTTAGAA 59.391 38.462 21.05 7.83 0.00 2.10
26 27 7.124901 AGAGCTTAGATGTGACATCCTTAGAAA 59.875 37.037 21.05 6.46 0.00 2.52
27 28 7.624549 AGCTTAGATGTGACATCCTTAGAAAA 58.375 34.615 21.05 4.95 0.00 2.29
28 29 7.550906 AGCTTAGATGTGACATCCTTAGAAAAC 59.449 37.037 21.05 4.74 0.00 2.43
29 30 7.334421 GCTTAGATGTGACATCCTTAGAAAACA 59.666 37.037 21.05 0.00 0.00 2.83
30 31 9.388506 CTTAGATGTGACATCCTTAGAAAACAT 57.611 33.333 21.05 1.75 0.00 2.71
31 32 7.856145 AGATGTGACATCCTTAGAAAACATC 57.144 36.000 21.05 0.00 41.77 3.06
32 33 7.628234 AGATGTGACATCCTTAGAAAACATCT 58.372 34.615 21.05 8.71 44.92 2.90
33 34 7.551974 AGATGTGACATCCTTAGAAAACATCTG 59.448 37.037 21.05 0.00 46.77 2.90
34 35 5.939883 TGTGACATCCTTAGAAAACATCTGG 59.060 40.000 0.00 0.00 39.30 3.86
35 36 6.173339 GTGACATCCTTAGAAAACATCTGGA 58.827 40.000 0.00 0.00 39.30 3.86
36 37 6.825721 GTGACATCCTTAGAAAACATCTGGAT 59.174 38.462 0.00 0.00 40.09 3.41
50 51 5.840243 CATCTGGATGTGAATTAGGCAAA 57.160 39.130 2.69 0.00 34.23 3.68
51 52 5.585390 CATCTGGATGTGAATTAGGCAAAC 58.415 41.667 2.69 0.00 34.23 2.93
52 53 4.922206 TCTGGATGTGAATTAGGCAAACT 58.078 39.130 0.00 0.00 0.00 2.66
53 54 4.701651 TCTGGATGTGAATTAGGCAAACTG 59.298 41.667 0.00 0.00 0.00 3.16
54 55 4.406456 TGGATGTGAATTAGGCAAACTGT 58.594 39.130 0.00 0.00 0.00 3.55
55 56 4.832266 TGGATGTGAATTAGGCAAACTGTT 59.168 37.500 0.00 0.00 0.00 3.16
56 57 5.304101 TGGATGTGAATTAGGCAAACTGTTT 59.696 36.000 0.00 0.00 0.00 2.83
57 58 6.183360 TGGATGTGAATTAGGCAAACTGTTTT 60.183 34.615 2.41 0.00 0.00 2.43
58 59 6.146021 GGATGTGAATTAGGCAAACTGTTTTG 59.854 38.462 2.41 1.16 44.42 2.44
59 60 5.355596 TGTGAATTAGGCAAACTGTTTTGG 58.644 37.500 2.41 0.00 42.22 3.28
60 61 5.105146 TGTGAATTAGGCAAACTGTTTTGGT 60.105 36.000 2.41 0.00 42.22 3.67
61 62 5.815222 GTGAATTAGGCAAACTGTTTTGGTT 59.185 36.000 2.41 0.00 42.22 3.67
62 63 6.981559 GTGAATTAGGCAAACTGTTTTGGTTA 59.018 34.615 2.41 0.00 42.22 2.85
63 64 7.492994 GTGAATTAGGCAAACTGTTTTGGTTAA 59.507 33.333 2.41 1.75 42.22 2.01
64 65 7.492994 TGAATTAGGCAAACTGTTTTGGTTAAC 59.507 33.333 2.41 0.00 42.22 2.01
65 66 6.532988 TTAGGCAAACTGTTTTGGTTAACT 57.467 33.333 2.41 0.00 42.22 2.24
66 67 7.642082 TTAGGCAAACTGTTTTGGTTAACTA 57.358 32.000 2.41 0.00 42.22 2.24
67 68 6.724893 AGGCAAACTGTTTTGGTTAACTAT 57.275 33.333 2.41 0.00 42.22 2.12
68 69 7.826918 AGGCAAACTGTTTTGGTTAACTATA 57.173 32.000 2.41 0.00 42.22 1.31
69 70 7.882179 AGGCAAACTGTTTTGGTTAACTATAG 58.118 34.615 2.41 0.00 42.22 1.31
70 71 7.504574 AGGCAAACTGTTTTGGTTAACTATAGT 59.495 33.333 2.41 0.00 42.22 2.12
71 72 8.139350 GGCAAACTGTTTTGGTTAACTATAGTT 58.861 33.333 21.35 21.35 42.22 2.24
72 73 8.964150 GCAAACTGTTTTGGTTAACTATAGTTG 58.036 33.333 25.27 9.06 42.22 3.16
75 76 8.967664 ACTGTTTTGGTTAACTATAGTTGTCA 57.032 30.769 25.27 17.23 38.90 3.58
76 77 9.569122 ACTGTTTTGGTTAACTATAGTTGTCAT 57.431 29.630 25.27 3.94 38.90 3.06
77 78 9.825972 CTGTTTTGGTTAACTATAGTTGTCATG 57.174 33.333 25.27 4.49 38.90 3.07
78 79 9.344772 TGTTTTGGTTAACTATAGTTGTCATGT 57.655 29.630 25.27 2.51 38.90 3.21
79 80 9.821662 GTTTTGGTTAACTATAGTTGTCATGTC 57.178 33.333 25.27 9.99 38.90 3.06
80 81 9.787435 TTTTGGTTAACTATAGTTGTCATGTCT 57.213 29.630 25.27 1.08 38.90 3.41
93 94 8.964476 AGTTGTCATGTCTAATTTATGGGTAG 57.036 34.615 0.00 0.00 0.00 3.18
94 95 8.548877 AGTTGTCATGTCTAATTTATGGGTAGT 58.451 33.333 0.00 0.00 0.00 2.73
95 96 9.174166 GTTGTCATGTCTAATTTATGGGTAGTT 57.826 33.333 0.00 0.00 0.00 2.24
96 97 8.731275 TGTCATGTCTAATTTATGGGTAGTTG 57.269 34.615 0.00 0.00 0.00 3.16
97 98 7.282224 TGTCATGTCTAATTTATGGGTAGTTGC 59.718 37.037 0.00 0.00 0.00 4.17
98 99 6.770785 TCATGTCTAATTTATGGGTAGTTGCC 59.229 38.462 0.00 0.00 0.00 4.52
99 100 6.068461 TGTCTAATTTATGGGTAGTTGCCA 57.932 37.500 0.00 0.00 0.00 4.92
100 101 5.883673 TGTCTAATTTATGGGTAGTTGCCAC 59.116 40.000 0.00 0.00 0.00 5.01
101 102 5.007332 GTCTAATTTATGGGTAGTTGCCACG 59.993 44.000 0.00 0.00 0.00 4.94
102 103 2.863132 TTTATGGGTAGTTGCCACGT 57.137 45.000 0.00 0.00 0.00 4.49
103 104 2.102070 TTATGGGTAGTTGCCACGTG 57.898 50.000 9.08 9.08 0.00 4.49
104 105 0.391927 TATGGGTAGTTGCCACGTGC 60.392 55.000 10.91 6.53 41.77 5.34
113 114 2.331451 GCCACGTGCACTCAAACC 59.669 61.111 16.19 0.00 40.77 3.27
114 115 2.477176 GCCACGTGCACTCAAACCA 61.477 57.895 16.19 0.00 40.77 3.67
115 116 1.795170 GCCACGTGCACTCAAACCAT 61.795 55.000 16.19 0.00 40.77 3.55
116 117 1.518325 CCACGTGCACTCAAACCATA 58.482 50.000 16.19 0.00 0.00 2.74
117 118 1.464608 CCACGTGCACTCAAACCATAG 59.535 52.381 16.19 0.00 0.00 2.23
118 119 2.143122 CACGTGCACTCAAACCATAGT 58.857 47.619 16.19 0.00 0.00 2.12
119 120 2.548057 CACGTGCACTCAAACCATAGTT 59.452 45.455 16.19 0.00 38.03 2.24
120 121 2.548057 ACGTGCACTCAAACCATAGTTG 59.452 45.455 16.19 0.00 35.97 3.16
121 122 2.665519 CGTGCACTCAAACCATAGTTGC 60.666 50.000 16.19 0.00 35.97 4.17
122 123 1.885887 TGCACTCAAACCATAGTTGCC 59.114 47.619 0.00 0.00 35.97 4.52
123 124 1.885887 GCACTCAAACCATAGTTGCCA 59.114 47.619 0.00 0.00 35.97 4.92
124 125 2.493278 GCACTCAAACCATAGTTGCCAT 59.507 45.455 0.00 0.00 35.97 4.40
125 126 3.694072 GCACTCAAACCATAGTTGCCATA 59.306 43.478 0.00 0.00 35.97 2.74
126 127 4.339247 GCACTCAAACCATAGTTGCCATAT 59.661 41.667 0.00 0.00 35.97 1.78
127 128 5.734220 GCACTCAAACCATAGTTGCCATATG 60.734 44.000 0.00 0.00 35.97 1.78
128 129 5.357878 CACTCAAACCATAGTTGCCATATGT 59.642 40.000 1.24 0.00 35.97 2.29
129 130 5.357878 ACTCAAACCATAGTTGCCATATGTG 59.642 40.000 1.24 0.00 35.97 3.21
130 131 4.097741 TCAAACCATAGTTGCCATATGTGC 59.902 41.667 1.24 5.66 35.97 4.57
131 132 3.582998 ACCATAGTTGCCATATGTGCT 57.417 42.857 14.63 4.86 0.00 4.40
132 133 3.902218 ACCATAGTTGCCATATGTGCTT 58.098 40.909 14.63 5.99 0.00 3.91
133 134 5.047566 ACCATAGTTGCCATATGTGCTTA 57.952 39.130 14.63 7.46 0.00 3.09
134 135 4.821805 ACCATAGTTGCCATATGTGCTTAC 59.178 41.667 14.63 12.49 0.00 2.34
135 136 4.216257 CCATAGTTGCCATATGTGCTTACC 59.784 45.833 14.63 3.70 0.00 2.85
136 137 3.652057 AGTTGCCATATGTGCTTACCT 57.348 42.857 14.63 5.33 0.00 3.08
137 138 4.771114 AGTTGCCATATGTGCTTACCTA 57.229 40.909 14.63 0.00 0.00 3.08
138 139 4.708177 AGTTGCCATATGTGCTTACCTAG 58.292 43.478 14.63 0.00 0.00 3.02
139 140 4.164221 AGTTGCCATATGTGCTTACCTAGT 59.836 41.667 14.63 0.00 0.00 2.57
140 141 4.771114 TGCCATATGTGCTTACCTAGTT 57.229 40.909 14.63 0.00 0.00 2.24
141 142 4.450976 TGCCATATGTGCTTACCTAGTTG 58.549 43.478 14.63 0.00 0.00 3.16
142 143 3.251004 GCCATATGTGCTTACCTAGTTGC 59.749 47.826 1.24 0.00 0.00 4.17
143 144 3.815401 CCATATGTGCTTACCTAGTTGCC 59.185 47.826 1.24 0.00 0.00 4.52
144 145 4.450976 CATATGTGCTTACCTAGTTGCCA 58.549 43.478 0.00 0.00 0.00 4.92
145 146 3.652057 ATGTGCTTACCTAGTTGCCAT 57.348 42.857 0.00 0.00 0.00 4.40
146 147 2.710377 TGTGCTTACCTAGTTGCCATG 58.290 47.619 0.00 0.00 0.00 3.66
147 148 2.039746 TGTGCTTACCTAGTTGCCATGT 59.960 45.455 0.00 0.00 0.00 3.21
148 149 2.420022 GTGCTTACCTAGTTGCCATGTG 59.580 50.000 0.00 0.00 0.00 3.21
149 150 2.039746 TGCTTACCTAGTTGCCATGTGT 59.960 45.455 0.00 0.00 0.00 3.72
150 151 2.420022 GCTTACCTAGTTGCCATGTGTG 59.580 50.000 0.00 0.00 0.00 3.82
151 152 3.674997 CTTACCTAGTTGCCATGTGTGT 58.325 45.455 0.00 0.00 0.00 3.72
152 153 2.656947 ACCTAGTTGCCATGTGTGTT 57.343 45.000 0.00 0.00 0.00 3.32
153 154 2.944129 ACCTAGTTGCCATGTGTGTTT 58.056 42.857 0.00 0.00 0.00 2.83
154 155 4.093472 ACCTAGTTGCCATGTGTGTTTA 57.907 40.909 0.00 0.00 0.00 2.01
155 156 3.818773 ACCTAGTTGCCATGTGTGTTTAC 59.181 43.478 0.00 0.00 0.00 2.01
156 157 3.190535 CCTAGTTGCCATGTGTGTTTACC 59.809 47.826 0.00 0.00 0.00 2.85
157 158 2.944129 AGTTGCCATGTGTGTTTACCT 58.056 42.857 0.00 0.00 0.00 3.08
158 159 2.622942 AGTTGCCATGTGTGTTTACCTG 59.377 45.455 0.00 0.00 0.00 4.00
159 160 1.614996 TGCCATGTGTGTTTACCTGG 58.385 50.000 0.00 0.00 0.00 4.45
160 161 1.133637 TGCCATGTGTGTTTACCTGGT 60.134 47.619 4.05 4.05 0.00 4.00
161 162 1.960689 GCCATGTGTGTTTACCTGGTT 59.039 47.619 3.84 0.00 0.00 3.67
162 163 2.288152 GCCATGTGTGTTTACCTGGTTG 60.288 50.000 3.84 0.00 0.00 3.77
163 164 2.288152 CCATGTGTGTTTACCTGGTTGC 60.288 50.000 3.84 0.00 0.00 4.17
164 165 1.394618 TGTGTGTTTACCTGGTTGCC 58.605 50.000 3.84 0.00 0.00 4.52
165 166 1.341089 TGTGTGTTTACCTGGTTGCCA 60.341 47.619 3.84 0.00 0.00 4.92
166 167 1.066454 GTGTGTTTACCTGGTTGCCAC 59.934 52.381 3.84 9.81 0.00 5.01
167 168 0.309612 GTGTTTACCTGGTTGCCACG 59.690 55.000 3.84 0.00 0.00 4.94
168 169 0.107116 TGTTTACCTGGTTGCCACGT 60.107 50.000 3.84 0.00 0.00 4.49
169 170 1.140452 TGTTTACCTGGTTGCCACGTA 59.860 47.619 3.84 0.00 0.00 3.57
170 171 1.532437 GTTTACCTGGTTGCCACGTAC 59.468 52.381 3.84 0.00 27.95 3.67
171 172 0.757512 TTACCTGGTTGCCACGTACA 59.242 50.000 3.84 0.00 27.95 2.90
172 173 0.033781 TACCTGGTTGCCACGTACAC 59.966 55.000 3.84 0.00 0.00 2.90
173 174 2.314647 CCTGGTTGCCACGTACACG 61.315 63.158 0.00 0.00 46.33 4.49
174 175 2.950172 CTGGTTGCCACGTACACGC 61.950 63.158 0.85 0.00 44.43 5.34
175 176 2.968156 GGTTGCCACGTACACGCA 60.968 61.111 0.85 0.00 44.43 5.24
176 177 2.535788 GGTTGCCACGTACACGCAA 61.536 57.895 0.85 7.04 44.43 4.85
177 178 1.572447 GTTGCCACGTACACGCAAT 59.428 52.632 12.66 0.00 43.78 3.56
178 179 0.040781 GTTGCCACGTACACGCAATT 60.041 50.000 12.66 0.00 43.78 2.32
179 180 0.040870 TTGCCACGTACACGCAATTG 60.041 50.000 0.00 0.00 44.43 2.32
180 181 1.160946 TGCCACGTACACGCAATTGT 61.161 50.000 7.40 0.00 44.43 2.71
181 182 0.791422 GCCACGTACACGCAATTGTA 59.209 50.000 7.40 0.00 44.43 2.41
182 183 1.201877 GCCACGTACACGCAATTGTAG 60.202 52.381 7.40 4.48 44.43 2.74
183 184 2.063266 CCACGTACACGCAATTGTAGT 58.937 47.619 7.40 5.13 44.43 2.73
184 185 2.477375 CCACGTACACGCAATTGTAGTT 59.523 45.455 7.40 2.73 44.43 2.24
185 186 3.465907 CACGTACACGCAATTGTAGTTG 58.534 45.455 7.40 2.15 44.43 3.16
195 196 4.815269 GCAATTGTAGTTGCCATTTACCA 58.185 39.130 7.40 0.00 46.69 3.25
196 197 5.233988 GCAATTGTAGTTGCCATTTACCAA 58.766 37.500 7.40 0.00 46.69 3.67
197 198 5.120053 GCAATTGTAGTTGCCATTTACCAAC 59.880 40.000 7.40 0.00 46.69 3.77
198 199 4.491234 TTGTAGTTGCCATTTACCAACG 57.509 40.909 0.00 0.00 44.45 4.10
199 200 3.741249 TGTAGTTGCCATTTACCAACGA 58.259 40.909 0.00 0.00 44.45 3.85
200 201 4.135306 TGTAGTTGCCATTTACCAACGAA 58.865 39.130 0.00 0.00 44.45 3.85
201 202 4.762765 TGTAGTTGCCATTTACCAACGAAT 59.237 37.500 0.00 0.00 44.45 3.34
202 203 4.434713 AGTTGCCATTTACCAACGAATC 57.565 40.909 0.00 0.00 44.45 2.52
203 204 3.823873 AGTTGCCATTTACCAACGAATCA 59.176 39.130 0.00 0.00 44.45 2.57
204 205 4.462483 AGTTGCCATTTACCAACGAATCAT 59.538 37.500 0.00 0.00 44.45 2.45
205 206 5.650266 AGTTGCCATTTACCAACGAATCATA 59.350 36.000 0.00 0.00 44.45 2.15
206 207 5.749596 TGCCATTTACCAACGAATCATAG 57.250 39.130 0.00 0.00 0.00 2.23
207 208 5.189928 TGCCATTTACCAACGAATCATAGT 58.810 37.500 0.00 0.00 0.00 2.12
208 209 5.650266 TGCCATTTACCAACGAATCATAGTT 59.350 36.000 0.00 0.00 0.00 2.24
209 210 5.971202 GCCATTTACCAACGAATCATAGTTG 59.029 40.000 0.00 1.74 45.14 3.16
210 211 6.404293 GCCATTTACCAACGAATCATAGTTGT 60.404 38.462 7.42 0.03 44.35 3.32
211 212 7.186804 CCATTTACCAACGAATCATAGTTGTC 58.813 38.462 7.42 0.00 44.35 3.18
212 213 7.148323 CCATTTACCAACGAATCATAGTTGTCA 60.148 37.037 7.42 0.00 44.35 3.58
213 214 7.915293 TTTACCAACGAATCATAGTTGTCAT 57.085 32.000 7.42 0.00 44.35 3.06
214 215 5.801350 ACCAACGAATCATAGTTGTCATG 57.199 39.130 7.42 0.00 44.35 3.07
215 216 5.245531 ACCAACGAATCATAGTTGTCATGT 58.754 37.500 7.42 0.00 44.35 3.21
216 217 5.122239 ACCAACGAATCATAGTTGTCATGTG 59.878 40.000 7.42 0.00 44.35 3.21
217 218 5.122239 CCAACGAATCATAGTTGTCATGTGT 59.878 40.000 7.42 0.00 44.35 3.72
218 219 5.784750 ACGAATCATAGTTGTCATGTGTG 57.215 39.130 0.00 0.00 0.00 3.82
219 220 5.237815 ACGAATCATAGTTGTCATGTGTGT 58.762 37.500 0.00 0.00 0.00 3.72
220 221 5.700832 ACGAATCATAGTTGTCATGTGTGTT 59.299 36.000 0.00 0.00 0.00 3.32
221 222 6.204688 ACGAATCATAGTTGTCATGTGTGTTT 59.795 34.615 0.00 0.00 0.00 2.83
222 223 7.386573 ACGAATCATAGTTGTCATGTGTGTTTA 59.613 33.333 0.00 0.00 0.00 2.01
223 224 7.688167 CGAATCATAGTTGTCATGTGTGTTTAC 59.312 37.037 0.00 0.00 0.00 2.01
224 225 6.795098 TCATAGTTGTCATGTGTGTTTACC 57.205 37.500 0.00 0.00 0.00 2.85
225 226 6.530120 TCATAGTTGTCATGTGTGTTTACCT 58.470 36.000 0.00 0.00 0.00 3.08
226 227 7.672240 TCATAGTTGTCATGTGTGTTTACCTA 58.328 34.615 0.00 0.00 0.00 3.08
227 228 7.817478 TCATAGTTGTCATGTGTGTTTACCTAG 59.183 37.037 0.00 0.00 0.00 3.02
228 229 5.925509 AGTTGTCATGTGTGTTTACCTAGT 58.074 37.500 0.00 0.00 0.00 2.57
229 230 6.354130 AGTTGTCATGTGTGTTTACCTAGTT 58.646 36.000 0.00 0.00 0.00 2.24
230 231 6.260050 AGTTGTCATGTGTGTTTACCTAGTTG 59.740 38.462 0.00 0.00 0.00 3.16
231 232 4.513692 TGTCATGTGTGTTTACCTAGTTGC 59.486 41.667 0.00 0.00 0.00 4.17
232 233 4.069304 TCATGTGTGTTTACCTAGTTGCC 58.931 43.478 0.00 0.00 0.00 4.52
233 234 2.485903 TGTGTGTTTACCTAGTTGCCG 58.514 47.619 0.00 0.00 0.00 5.69
234 235 1.196127 GTGTGTTTACCTAGTTGCCGC 59.804 52.381 0.00 0.00 0.00 6.53
235 236 0.441145 GTGTTTACCTAGTTGCCGCG 59.559 55.000 0.00 0.00 0.00 6.46
236 237 0.033781 TGTTTACCTAGTTGCCGCGT 59.966 50.000 4.92 0.00 0.00 6.01
237 238 1.271934 TGTTTACCTAGTTGCCGCGTA 59.728 47.619 4.92 0.00 0.00 4.42
238 239 2.094078 TGTTTACCTAGTTGCCGCGTAT 60.094 45.455 4.92 0.00 0.00 3.06
239 240 2.212869 TTACCTAGTTGCCGCGTATG 57.787 50.000 4.92 0.00 0.00 2.39
240 241 0.249155 TACCTAGTTGCCGCGTATGC 60.249 55.000 4.92 1.26 37.91 3.14
263 264 3.354948 AACTGCAGTTGCCATCTATCA 57.645 42.857 30.66 0.00 41.18 2.15
264 265 2.636830 ACTGCAGTTGCCATCTATCAC 58.363 47.619 15.25 0.00 41.18 3.06
265 266 1.945394 CTGCAGTTGCCATCTATCACC 59.055 52.381 5.25 0.00 41.18 4.02
266 267 1.281577 TGCAGTTGCCATCTATCACCA 59.718 47.619 1.06 0.00 41.18 4.17
267 268 2.092267 TGCAGTTGCCATCTATCACCAT 60.092 45.455 1.06 0.00 41.18 3.55
268 269 3.136260 TGCAGTTGCCATCTATCACCATA 59.864 43.478 1.06 0.00 41.18 2.74
269 270 3.499918 GCAGTTGCCATCTATCACCATAC 59.500 47.826 0.00 0.00 34.31 2.39
270 271 3.742882 CAGTTGCCATCTATCACCATACG 59.257 47.826 0.00 0.00 0.00 3.06
271 272 3.641436 AGTTGCCATCTATCACCATACGA 59.359 43.478 0.00 0.00 0.00 3.43
272 273 4.100963 AGTTGCCATCTATCACCATACGAA 59.899 41.667 0.00 0.00 0.00 3.85
273 274 3.990092 TGCCATCTATCACCATACGAAC 58.010 45.455 0.00 0.00 0.00 3.95
274 275 2.987149 GCCATCTATCACCATACGAACG 59.013 50.000 0.00 0.00 0.00 3.95
275 276 3.552273 GCCATCTATCACCATACGAACGT 60.552 47.826 5.03 5.03 0.00 3.99
276 277 4.227538 CCATCTATCACCATACGAACGTC 58.772 47.826 2.45 0.00 0.00 4.34
277 278 3.597377 TCTATCACCATACGAACGTCG 57.403 47.619 2.45 5.97 46.93 5.12
286 287 4.986587 CGAACGTCGTGTGGGCGA 62.987 66.667 0.00 0.00 38.68 5.54
287 288 2.659244 GAACGTCGTGTGGGCGAA 60.659 61.111 0.00 0.00 42.82 4.70
288 289 2.654912 GAACGTCGTGTGGGCGAAG 61.655 63.158 0.00 0.00 42.82 3.79
289 290 3.141522 AACGTCGTGTGGGCGAAGA 62.142 57.895 0.00 0.00 42.82 2.87
290 291 2.805353 CGTCGTGTGGGCGAAGAG 60.805 66.667 0.00 0.00 42.82 2.85
291 292 3.112709 GTCGTGTGGGCGAAGAGC 61.113 66.667 0.00 0.00 42.82 4.09
302 303 2.533318 CGAAGAGCAGTTCACCCAC 58.467 57.895 0.00 0.00 0.00 4.61
303 304 0.249868 CGAAGAGCAGTTCACCCACA 60.250 55.000 0.00 0.00 0.00 4.17
304 305 1.609061 CGAAGAGCAGTTCACCCACAT 60.609 52.381 0.00 0.00 0.00 3.21
305 306 2.353704 CGAAGAGCAGTTCACCCACATA 60.354 50.000 0.00 0.00 0.00 2.29
306 307 2.770164 AGAGCAGTTCACCCACATAC 57.230 50.000 0.00 0.00 0.00 2.39
307 308 1.066858 AGAGCAGTTCACCCACATACG 60.067 52.381 0.00 0.00 0.00 3.06
308 309 0.673644 AGCAGTTCACCCACATACGC 60.674 55.000 0.00 0.00 0.00 4.42
309 310 1.966493 GCAGTTCACCCACATACGCG 61.966 60.000 3.53 3.53 0.00 6.01
310 311 0.669318 CAGTTCACCCACATACGCGT 60.669 55.000 19.17 19.17 0.00 6.01
311 312 0.669318 AGTTCACCCACATACGCGTG 60.669 55.000 24.59 8.88 36.61 5.34
317 318 3.780693 CACATACGCGTGGACTGG 58.219 61.111 24.59 7.04 33.05 4.00
318 319 1.080093 CACATACGCGTGGACTGGT 60.080 57.895 24.59 7.71 33.05 4.00
319 320 0.669318 CACATACGCGTGGACTGGTT 60.669 55.000 24.59 0.00 33.05 3.67
320 321 0.669318 ACATACGCGTGGACTGGTTG 60.669 55.000 24.59 8.61 0.00 3.77
321 322 1.079405 ATACGCGTGGACTGGTTGG 60.079 57.895 24.59 0.00 0.00 3.77
322 323 1.823169 ATACGCGTGGACTGGTTGGT 61.823 55.000 24.59 0.00 0.00 3.67
323 324 2.702751 TACGCGTGGACTGGTTGGTG 62.703 60.000 24.59 0.00 0.00 4.17
324 325 2.110213 GCGTGGACTGGTTGGTGA 59.890 61.111 0.00 0.00 0.00 4.02
325 326 2.251642 GCGTGGACTGGTTGGTGAC 61.252 63.158 0.00 0.00 0.00 3.67
326 327 1.445942 CGTGGACTGGTTGGTGACT 59.554 57.895 0.00 0.00 0.00 3.41
327 328 0.880278 CGTGGACTGGTTGGTGACTG 60.880 60.000 0.00 0.00 0.00 3.51
328 329 0.180406 GTGGACTGGTTGGTGACTGT 59.820 55.000 0.00 0.00 0.00 3.55
329 330 0.180171 TGGACTGGTTGGTGACTGTG 59.820 55.000 0.00 0.00 0.00 3.66
330 331 0.180406 GGACTGGTTGGTGACTGTGT 59.820 55.000 0.00 0.00 0.00 3.72
331 332 1.299541 GACTGGTTGGTGACTGTGTG 58.700 55.000 0.00 0.00 0.00 3.82
332 333 0.908910 ACTGGTTGGTGACTGTGTGA 59.091 50.000 0.00 0.00 0.00 3.58
333 334 1.134401 ACTGGTTGGTGACTGTGTGAG 60.134 52.381 0.00 0.00 0.00 3.51
334 335 0.463654 TGGTTGGTGACTGTGTGAGC 60.464 55.000 0.00 0.00 0.00 4.26
335 336 1.498865 GGTTGGTGACTGTGTGAGCG 61.499 60.000 0.00 0.00 0.00 5.03
336 337 1.227527 TTGGTGACTGTGTGAGCGG 60.228 57.895 0.00 0.00 0.00 5.52
337 338 2.357517 GGTGACTGTGTGAGCGGG 60.358 66.667 0.00 0.00 0.00 6.13
338 339 2.734591 GTGACTGTGTGAGCGGGA 59.265 61.111 0.00 0.00 0.00 5.14
339 340 1.069090 GTGACTGTGTGAGCGGGAA 59.931 57.895 0.00 0.00 0.00 3.97
340 341 0.531974 GTGACTGTGTGAGCGGGAAA 60.532 55.000 0.00 0.00 0.00 3.13
341 342 0.396435 TGACTGTGTGAGCGGGAAAT 59.604 50.000 0.00 0.00 0.00 2.17
342 343 0.798776 GACTGTGTGAGCGGGAAATG 59.201 55.000 0.00 0.00 0.00 2.32
343 344 0.606401 ACTGTGTGAGCGGGAAATGG 60.606 55.000 0.00 0.00 0.00 3.16
344 345 0.606401 CTGTGTGAGCGGGAAATGGT 60.606 55.000 0.00 0.00 0.00 3.55
345 346 0.179004 TGTGTGAGCGGGAAATGGTT 60.179 50.000 0.00 0.00 0.00 3.67
346 347 0.521735 GTGTGAGCGGGAAATGGTTC 59.478 55.000 0.00 0.00 0.00 3.62
347 348 0.953471 TGTGAGCGGGAAATGGTTCG 60.953 55.000 0.00 0.00 34.28 3.95
350 351 3.822192 GCGGGAAATGGTTCGCCC 61.822 66.667 0.00 0.00 42.29 6.13
393 394 3.636231 CTGGGGTCTTGTGGGCGA 61.636 66.667 0.00 0.00 0.00 5.54
394 395 3.612247 CTGGGGTCTTGTGGGCGAG 62.612 68.421 0.00 0.00 0.00 5.03
399 400 4.742201 TCTTGTGGGCGAGCGCTC 62.742 66.667 27.64 27.64 43.05 5.03
400 401 4.749310 CTTGTGGGCGAGCGCTCT 62.749 66.667 32.88 1.30 43.18 4.09
412 413 4.476410 CGCTCTGACGCCTACGCA 62.476 66.667 0.00 0.00 45.53 5.24
413 414 2.126071 GCTCTGACGCCTACGCAA 60.126 61.111 0.00 0.00 45.53 4.85
414 415 2.161486 GCTCTGACGCCTACGCAAG 61.161 63.158 0.00 0.00 45.53 4.01
415 416 2.126071 TCTGACGCCTACGCAAGC 60.126 61.111 0.00 0.00 45.53 4.01
420 421 2.658593 CGCCTACGCAAGCGCTAT 60.659 61.111 12.05 0.00 46.50 2.97
421 422 2.931386 GCCTACGCAAGCGCTATG 59.069 61.111 12.05 12.79 44.19 2.23
422 423 2.931386 CCTACGCAAGCGCTATGC 59.069 61.111 25.14 25.14 44.19 3.14
441 442 1.927895 CCTACGTGGCACTGAGATTC 58.072 55.000 16.72 0.00 0.00 2.52
442 443 1.204704 CCTACGTGGCACTGAGATTCA 59.795 52.381 16.72 0.00 0.00 2.57
443 444 2.159043 CCTACGTGGCACTGAGATTCAT 60.159 50.000 16.72 0.00 0.00 2.57
444 445 2.479566 ACGTGGCACTGAGATTCATT 57.520 45.000 16.72 0.00 0.00 2.57
445 446 2.783135 ACGTGGCACTGAGATTCATTT 58.217 42.857 16.72 0.00 0.00 2.32
446 447 3.937814 ACGTGGCACTGAGATTCATTTA 58.062 40.909 16.72 0.00 0.00 1.40
447 448 3.935203 ACGTGGCACTGAGATTCATTTAG 59.065 43.478 16.72 0.00 0.00 1.85
448 449 4.183865 CGTGGCACTGAGATTCATTTAGA 58.816 43.478 16.72 0.00 0.00 2.10
449 450 4.631377 CGTGGCACTGAGATTCATTTAGAA 59.369 41.667 16.72 0.00 41.28 2.10
451 452 6.183360 CGTGGCACTGAGATTCATTTAGAATT 60.183 38.462 16.72 0.00 46.76 2.17
452 453 7.192232 GTGGCACTGAGATTCATTTAGAATTC 58.808 38.462 11.13 0.00 46.76 2.17
453 454 6.885918 TGGCACTGAGATTCATTTAGAATTCA 59.114 34.615 8.44 0.00 46.76 2.57
454 455 7.558807 TGGCACTGAGATTCATTTAGAATTCAT 59.441 33.333 8.44 0.00 46.76 2.57
455 456 7.861372 GGCACTGAGATTCATTTAGAATTCATG 59.139 37.037 8.44 3.13 46.76 3.07
456 457 8.404000 GCACTGAGATTCATTTAGAATTCATGT 58.596 33.333 8.44 0.00 46.76 3.21
483 484 7.716799 AACATAATTAAGGTGGATCAAAGCA 57.283 32.000 0.00 0.00 0.00 3.91
484 485 7.902920 ACATAATTAAGGTGGATCAAAGCAT 57.097 32.000 0.00 0.00 0.00 3.79
485 486 7.719483 ACATAATTAAGGTGGATCAAAGCATG 58.281 34.615 0.00 0.00 0.00 4.06
486 487 7.342799 ACATAATTAAGGTGGATCAAAGCATGT 59.657 33.333 0.00 0.00 0.00 3.21
487 488 5.587388 ATTAAGGTGGATCAAAGCATGTG 57.413 39.130 0.00 0.00 0.00 3.21
488 489 1.843368 AGGTGGATCAAAGCATGTGG 58.157 50.000 0.00 0.00 0.00 4.17
489 490 1.355381 AGGTGGATCAAAGCATGTGGA 59.645 47.619 0.00 0.00 0.00 4.02
490 491 1.474077 GGTGGATCAAAGCATGTGGAC 59.526 52.381 0.00 0.00 0.00 4.02
491 492 1.131126 GTGGATCAAAGCATGTGGACG 59.869 52.381 0.00 0.00 0.00 4.79
492 493 1.003003 TGGATCAAAGCATGTGGACGA 59.997 47.619 0.00 0.00 0.00 4.20
493 494 2.292267 GGATCAAAGCATGTGGACGAT 58.708 47.619 0.00 0.00 0.00 3.73
494 495 2.032550 GGATCAAAGCATGTGGACGATG 59.967 50.000 0.00 0.00 0.00 3.84
495 496 2.183478 TCAAAGCATGTGGACGATGT 57.817 45.000 0.00 0.00 0.00 3.06
496 497 1.805943 TCAAAGCATGTGGACGATGTG 59.194 47.619 0.00 0.00 0.00 3.21
497 498 1.536766 CAAAGCATGTGGACGATGTGT 59.463 47.619 0.00 0.00 0.00 3.72
498 499 2.741517 CAAAGCATGTGGACGATGTGTA 59.258 45.455 0.00 0.00 0.00 2.90
499 500 2.760634 AGCATGTGGACGATGTGTAA 57.239 45.000 0.00 0.00 0.00 2.41
500 501 3.052455 AGCATGTGGACGATGTGTAAA 57.948 42.857 0.00 0.00 0.00 2.01
501 502 3.002791 AGCATGTGGACGATGTGTAAAG 58.997 45.455 0.00 0.00 0.00 1.85
502 503 2.095853 GCATGTGGACGATGTGTAAAGG 59.904 50.000 0.00 0.00 0.00 3.11
503 504 3.334691 CATGTGGACGATGTGTAAAGGT 58.665 45.455 0.00 0.00 0.00 3.50
504 505 2.761559 TGTGGACGATGTGTAAAGGTG 58.238 47.619 0.00 0.00 0.00 4.00
505 506 2.103432 TGTGGACGATGTGTAAAGGTGT 59.897 45.455 0.00 0.00 0.00 4.16
506 507 3.135994 GTGGACGATGTGTAAAGGTGTT 58.864 45.455 0.00 0.00 0.00 3.32
507 508 4.202233 TGTGGACGATGTGTAAAGGTGTTA 60.202 41.667 0.00 0.00 0.00 2.41
508 509 4.933400 GTGGACGATGTGTAAAGGTGTTAT 59.067 41.667 0.00 0.00 0.00 1.89
509 510 5.410439 GTGGACGATGTGTAAAGGTGTTATT 59.590 40.000 0.00 0.00 0.00 1.40
510 511 6.591062 GTGGACGATGTGTAAAGGTGTTATTA 59.409 38.462 0.00 0.00 0.00 0.98
511 512 7.279313 GTGGACGATGTGTAAAGGTGTTATTAT 59.721 37.037 0.00 0.00 0.00 1.28
512 513 7.825270 TGGACGATGTGTAAAGGTGTTATTATT 59.175 33.333 0.00 0.00 0.00 1.40
513 514 8.671028 GGACGATGTGTAAAGGTGTTATTATTT 58.329 33.333 0.00 0.00 0.00 1.40
514 515 9.485591 GACGATGTGTAAAGGTGTTATTATTTG 57.514 33.333 0.00 0.00 0.00 2.32
515 516 8.455682 ACGATGTGTAAAGGTGTTATTATTTGG 58.544 33.333 0.00 0.00 0.00 3.28
516 517 7.913297 CGATGTGTAAAGGTGTTATTATTTGGG 59.087 37.037 0.00 0.00 0.00 4.12
730 1181 2.042843 CCTCTAGCCGGTCCCACT 60.043 66.667 1.90 0.00 0.00 4.00
870 1321 1.602377 GTCCACAAGACGAAAACCCAG 59.398 52.381 0.00 0.00 35.30 4.45
892 1343 1.068333 CAGATCAAAACACAAGGCCGG 60.068 52.381 0.00 0.00 0.00 6.13
920 1371 2.263741 CCTGCGCTCCAGCTTGTTT 61.264 57.895 9.73 0.00 40.36 2.83
921 1372 1.081641 CTGCGCTCCAGCTTGTTTG 60.082 57.895 9.73 0.00 39.32 2.93
959 1411 1.035932 ACGGAGGTGAGTGGGATACG 61.036 60.000 0.00 0.00 37.60 3.06
986 1438 1.269621 GCGTATATATAGCCCGCCTGG 60.270 57.143 12.75 0.00 38.52 4.45
1002 1454 4.329545 GGGCGCTGGGTGAACTGA 62.330 66.667 7.64 0.00 0.00 3.41
1019 1471 4.189188 AACCGATCGACCTCGCGG 62.189 66.667 18.66 10.91 45.77 6.46
1061 1513 3.461773 GAGCTCCGTGGCCAGCTA 61.462 66.667 16.53 0.00 46.31 3.32
1340 1792 3.878519 GACGACGGCGAGGGAGAG 61.879 72.222 22.49 0.00 41.64 3.20
1358 1810 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
1744 2196 5.283457 ACAAGCCTATAAGATCTCCACAC 57.717 43.478 0.00 0.00 0.00 3.82
1844 2322 4.008330 CTCCATGCATGTCCATCTTATCC 58.992 47.826 24.58 0.00 0.00 2.59
1855 2333 6.436027 TGTCCATCTTATCCTACTTGTCTCT 58.564 40.000 0.00 0.00 0.00 3.10
1856 2334 6.547880 TGTCCATCTTATCCTACTTGTCTCTC 59.452 42.308 0.00 0.00 0.00 3.20
1911 2389 0.599204 CGGACAACAGTAGCACCGTT 60.599 55.000 0.00 0.00 36.38 4.44
1939 2417 1.103803 GACCAGCTCGTACATGAGGA 58.896 55.000 0.00 0.00 36.47 3.71
2187 2665 3.378602 TACTTCTCCGCAGCCGCA 61.379 61.111 0.00 0.00 38.40 5.69
2306 2784 3.686016 TGTTGGTTGGCTCTCCTTAATC 58.314 45.455 0.00 0.00 0.00 1.75
2311 2789 1.583556 TGGCTCTCCTTAATCTGCCA 58.416 50.000 0.00 0.00 46.59 4.92
2389 2867 4.592485 TGCCGGATAGATCTTTCTTCTC 57.408 45.455 5.05 2.16 33.17 2.87
2390 2868 4.219115 TGCCGGATAGATCTTTCTTCTCT 58.781 43.478 5.05 0.00 33.17 3.10
2392 2870 5.221342 TGCCGGATAGATCTTTCTTCTCTTC 60.221 44.000 5.05 0.00 33.17 2.87
2393 2871 5.010617 GCCGGATAGATCTTTCTTCTCTTCT 59.989 44.000 5.05 0.00 33.17 2.85
2394 2872 6.207810 GCCGGATAGATCTTTCTTCTCTTCTA 59.792 42.308 5.05 0.00 33.17 2.10
2395 2873 7.590279 CCGGATAGATCTTTCTTCTCTTCTAC 58.410 42.308 12.20 0.00 33.17 2.59
2459 2940 0.505231 CGCGAACGCTTTAGTTGTCA 59.495 50.000 16.66 0.00 39.32 3.58
2509 2990 2.182791 CGTCGCCACATCAGCTCT 59.817 61.111 0.00 0.00 0.00 4.09
2523 3011 2.246719 AGCTCTGTTCGCTGAAACTT 57.753 45.000 0.00 0.00 36.15 2.66
2553 3041 1.467342 GCGAACACAGTCCCAATTACC 59.533 52.381 0.00 0.00 0.00 2.85
2561 3049 1.616930 TCCCAATTACCCCTCGCCA 60.617 57.895 0.00 0.00 0.00 5.69
2563 3051 0.768622 CCCAATTACCCCTCGCCATA 59.231 55.000 0.00 0.00 0.00 2.74
2583 3071 5.449314 CCATACTCGCCTCTATTCCTATTCG 60.449 48.000 0.00 0.00 0.00 3.34
2586 3074 1.404315 CGCCTCTATTCCTATTCGGCC 60.404 57.143 0.00 0.00 32.64 6.13
2603 3091 1.533711 CCGCATTCATCCCCCTCTT 59.466 57.895 0.00 0.00 0.00 2.85
2604 3092 0.536006 CCGCATTCATCCCCCTCTTC 60.536 60.000 0.00 0.00 0.00 2.87
2605 3093 0.471617 CGCATTCATCCCCCTCTTCT 59.528 55.000 0.00 0.00 0.00 2.85
2613 3121 0.327576 TCCCCCTCTTCTCCATTCCC 60.328 60.000 0.00 0.00 0.00 3.97
2614 3122 0.327964 CCCCCTCTTCTCCATTCCCT 60.328 60.000 0.00 0.00 0.00 4.20
2624 3132 7.420680 CCTCTTCTCCATTCCCTATTTACACAT 60.421 40.741 0.00 0.00 0.00 3.21
2633 3141 4.879545 TCCCTATTTACACATTTTCGAGGC 59.120 41.667 0.00 0.00 0.00 4.70
2638 3377 2.033448 ACATTTTCGAGGCGGGCA 59.967 55.556 3.78 0.00 0.00 5.36
2642 3381 2.463589 ATTTTCGAGGCGGGCAGTGA 62.464 55.000 3.78 0.00 0.00 3.41
2650 3389 4.293648 CGGGCAGTGACGGTGACA 62.294 66.667 0.00 0.00 0.00 3.58
2667 3406 1.251527 ACAAGACCGAGCTCACCGAT 61.252 55.000 15.40 0.00 0.00 4.18
2673 3412 2.202987 GAGCTCACCGATGCAGGG 60.203 66.667 9.40 5.09 35.02 4.45
2686 3425 2.831770 CAGGGTGTGCTGGTGAGT 59.168 61.111 0.00 0.00 0.00 3.41
2687 3426 1.598962 CAGGGTGTGCTGGTGAGTG 60.599 63.158 0.00 0.00 0.00 3.51
2688 3427 2.281761 GGGTGTGCTGGTGAGTGG 60.282 66.667 0.00 0.00 0.00 4.00
2689 3428 2.980233 GGTGTGCTGGTGAGTGGC 60.980 66.667 0.00 0.00 0.00 5.01
2690 3429 3.349006 GTGTGCTGGTGAGTGGCG 61.349 66.667 0.00 0.00 0.00 5.69
2691 3430 3.545574 TGTGCTGGTGAGTGGCGA 61.546 61.111 0.00 0.00 0.00 5.54
2692 3431 2.046892 GTGCTGGTGAGTGGCGAT 60.047 61.111 0.00 0.00 0.00 4.58
2693 3432 2.046988 TGCTGGTGAGTGGCGATG 60.047 61.111 0.00 0.00 0.00 3.84
2694 3433 2.821366 GCTGGTGAGTGGCGATGG 60.821 66.667 0.00 0.00 0.00 3.51
2695 3434 2.124983 CTGGTGAGTGGCGATGGG 60.125 66.667 0.00 0.00 0.00 4.00
2696 3435 4.408821 TGGTGAGTGGCGATGGGC 62.409 66.667 0.00 0.00 42.51 5.36
2705 3444 4.996434 GCGATGGGCCGGATGAGG 62.996 72.222 5.05 0.00 34.80 3.86
3055 3794 4.935885 CTATTCCTATTCGGCTGCATTC 57.064 45.455 0.50 0.00 0.00 2.67
3056 3795 2.708216 TTCCTATTCGGCTGCATTCA 57.292 45.000 0.50 0.00 0.00 2.57
3057 3796 1.953559 TCCTATTCGGCTGCATTCAC 58.046 50.000 0.50 0.00 0.00 3.18
3058 3797 0.947244 CCTATTCGGCTGCATTCACC 59.053 55.000 0.50 0.00 0.00 4.02
3059 3798 0.947244 CTATTCGGCTGCATTCACCC 59.053 55.000 0.50 0.00 0.00 4.61
3060 3799 0.465460 TATTCGGCTGCATTCACCCC 60.465 55.000 0.50 0.00 0.00 4.95
3061 3800 3.808692 TATTCGGCTGCATTCACCCCC 62.809 57.143 0.50 0.00 0.00 5.40
3084 3823 4.157849 CCCCCTCTTTACTTCTCCATTC 57.842 50.000 0.00 0.00 0.00 2.67
3085 3824 3.117851 CCCCCTCTTTACTTCTCCATTCC 60.118 52.174 0.00 0.00 0.00 3.01
3086 3825 3.117851 CCCCTCTTTACTTCTCCATTCCC 60.118 52.174 0.00 0.00 0.00 3.97
3087 3826 3.117851 CCCTCTTTACTTCTCCATTCCCC 60.118 52.174 0.00 0.00 0.00 4.81
3088 3827 3.523564 CCTCTTTACTTCTCCATTCCCCA 59.476 47.826 0.00 0.00 0.00 4.96
3089 3828 4.166919 CCTCTTTACTTCTCCATTCCCCAT 59.833 45.833 0.00 0.00 0.00 4.00
3090 3829 5.340360 CCTCTTTACTTCTCCATTCCCCATT 60.340 44.000 0.00 0.00 0.00 3.16
3091 3830 6.152638 TCTTTACTTCTCCATTCCCCATTT 57.847 37.500 0.00 0.00 0.00 2.32
3092 3831 7.278724 TCTTTACTTCTCCATTCCCCATTTA 57.721 36.000 0.00 0.00 0.00 1.40
3093 3832 7.116736 TCTTTACTTCTCCATTCCCCATTTAC 58.883 38.462 0.00 0.00 0.00 2.01
3094 3833 4.946160 ACTTCTCCATTCCCCATTTACA 57.054 40.909 0.00 0.00 0.00 2.41
3095 3834 4.600062 ACTTCTCCATTCCCCATTTACAC 58.400 43.478 0.00 0.00 0.00 2.90
3096 3835 4.044065 ACTTCTCCATTCCCCATTTACACA 59.956 41.667 0.00 0.00 0.00 3.72
3097 3836 4.879295 TCTCCATTCCCCATTTACACAT 57.121 40.909 0.00 0.00 0.00 3.21
3098 3837 5.205517 TCTCCATTCCCCATTTACACATT 57.794 39.130 0.00 0.00 0.00 2.71
3099 3838 5.588845 TCTCCATTCCCCATTTACACATTT 58.411 37.500 0.00 0.00 0.00 2.32
3100 3839 6.022315 TCTCCATTCCCCATTTACACATTTT 58.978 36.000 0.00 0.00 0.00 1.82
3101 3840 6.500049 TCTCCATTCCCCATTTACACATTTTT 59.500 34.615 0.00 0.00 0.00 1.94
3115 3854 2.430805 TTTTTAGGCGGGCGGTGA 59.569 55.556 0.00 0.00 0.00 4.02
3116 3855 1.967494 TTTTTAGGCGGGCGGTGAC 60.967 57.895 0.00 0.00 0.00 3.67
3128 3867 4.355925 GGTGACGGTGACAAGACC 57.644 61.111 0.00 0.00 0.00 3.85
3129 3868 1.444250 GGTGACGGTGACAAGACCA 59.556 57.895 0.00 0.00 35.50 4.02
3130 3869 0.179067 GGTGACGGTGACAAGACCAA 60.179 55.000 0.00 0.00 35.50 3.67
3131 3870 1.217882 GTGACGGTGACAAGACCAAG 58.782 55.000 0.00 0.00 35.50 3.61
3132 3871 0.531974 TGACGGTGACAAGACCAAGC 60.532 55.000 0.00 0.00 35.50 4.01
3133 3872 0.249911 GACGGTGACAAGACCAAGCT 60.250 55.000 0.00 0.00 35.50 3.74
3134 3873 0.249911 ACGGTGACAAGACCAAGCTC 60.250 55.000 0.00 0.00 35.50 4.09
3135 3874 0.951040 CGGTGACAAGACCAAGCTCC 60.951 60.000 0.00 0.00 35.50 4.70
3136 3875 0.606673 GGTGACAAGACCAAGCTCCC 60.607 60.000 0.00 0.00 35.88 4.30
3137 3876 0.951040 GTGACAAGACCAAGCTCCCG 60.951 60.000 0.00 0.00 0.00 5.14
3138 3877 1.118965 TGACAAGACCAAGCTCCCGA 61.119 55.000 0.00 0.00 0.00 5.14
3139 3878 0.250513 GACAAGACCAAGCTCCCGAT 59.749 55.000 0.00 0.00 0.00 4.18
3140 3879 0.036010 ACAAGACCAAGCTCCCGATG 60.036 55.000 0.00 0.00 0.00 3.84
3141 3880 1.078143 AAGACCAAGCTCCCGATGC 60.078 57.895 0.00 0.00 0.00 3.91
3142 3881 1.841302 AAGACCAAGCTCCCGATGCA 61.841 55.000 0.00 0.00 0.00 3.96
3143 3882 1.817099 GACCAAGCTCCCGATGCAG 60.817 63.158 0.00 0.00 0.00 4.41
3144 3883 2.515523 CCAAGCTCCCGATGCAGG 60.516 66.667 0.00 0.00 0.00 4.85
3145 3884 2.586245 CAAGCTCCCGATGCAGGA 59.414 61.111 0.00 0.00 0.00 3.86
3146 3885 1.147824 CAAGCTCCCGATGCAGGAT 59.852 57.895 0.00 0.00 31.48 3.24
3147 3886 1.147824 AAGCTCCCGATGCAGGATG 59.852 57.895 0.00 0.00 40.87 3.51
3148 3887 1.630126 AAGCTCCCGATGCAGGATGT 61.630 55.000 0.00 0.00 39.31 3.06
3149 3888 1.890979 GCTCCCGATGCAGGATGTG 60.891 63.158 0.00 0.00 39.31 3.21
3158 3897 2.267006 CAGGATGTGCTGGCGAGT 59.733 61.111 0.00 0.00 0.00 4.18
3287 4026 5.976458 TCAGGCAAAACTGAATTTTTCACT 58.024 33.333 0.00 0.00 44.03 3.41
3288 4027 5.811613 TCAGGCAAAACTGAATTTTTCACTG 59.188 36.000 0.00 0.00 44.03 3.66
3293 4032 7.201723 GGCAAAACTGAATTTTTCACTGGAAAT 60.202 33.333 0.00 0.00 42.31 2.17
3296 4035 6.849588 ACTGAATTTTTCACTGGAAATTGC 57.150 33.333 8.06 0.00 42.31 3.56
3305 4053 1.679153 ACTGGAAATTGCGGTTTTCGT 59.321 42.857 0.00 0.00 41.72 3.85
3311 4059 0.435769 ATTGCGGTTTTCGTACGTCG 59.564 50.000 16.05 12.89 41.72 5.12
3353 4102 9.995003 AGAGCAAAATAAAATTTTGATGGTACA 57.005 25.926 22.78 0.00 40.73 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.132658 TCTAAGGATGTCACATCTAAGCTCT 58.867 40.000 17.46 2.09 0.00 4.09
1 2 6.398234 TCTAAGGATGTCACATCTAAGCTC 57.602 41.667 17.46 0.00 0.00 4.09
2 3 6.798427 TTCTAAGGATGTCACATCTAAGCT 57.202 37.500 17.46 3.19 0.00 3.74
4 5 8.777865 TGTTTTCTAAGGATGTCACATCTAAG 57.222 34.615 17.46 11.83 0.00 2.18
5 6 9.383519 GATGTTTTCTAAGGATGTCACATCTAA 57.616 33.333 17.46 2.83 37.41 2.10
6 7 8.762645 AGATGTTTTCTAAGGATGTCACATCTA 58.237 33.333 17.46 2.37 44.89 1.98
7 8 7.551974 CAGATGTTTTCTAAGGATGTCACATCT 59.448 37.037 17.46 1.18 46.71 2.90
8 9 7.201679 CCAGATGTTTTCTAAGGATGTCACATC 60.202 40.741 9.53 9.53 39.62 3.06
9 10 6.600822 CCAGATGTTTTCTAAGGATGTCACAT 59.399 38.462 0.00 0.00 31.77 3.21
10 11 5.939883 CCAGATGTTTTCTAAGGATGTCACA 59.060 40.000 0.00 0.00 31.77 3.58
11 12 6.173339 TCCAGATGTTTTCTAAGGATGTCAC 58.827 40.000 0.00 0.00 31.77 3.67
12 13 6.373005 TCCAGATGTTTTCTAAGGATGTCA 57.627 37.500 0.00 0.00 31.77 3.58
13 14 7.256756 CATCCAGATGTTTTCTAAGGATGTC 57.743 40.000 9.72 0.00 43.59 3.06
28 29 5.359009 AGTTTGCCTAATTCACATCCAGATG 59.641 40.000 6.09 6.09 44.15 2.90
29 30 5.359009 CAGTTTGCCTAATTCACATCCAGAT 59.641 40.000 0.00 0.00 0.00 2.90
30 31 4.701651 CAGTTTGCCTAATTCACATCCAGA 59.298 41.667 0.00 0.00 0.00 3.86
31 32 4.460382 ACAGTTTGCCTAATTCACATCCAG 59.540 41.667 0.00 0.00 0.00 3.86
32 33 4.406456 ACAGTTTGCCTAATTCACATCCA 58.594 39.130 0.00 0.00 0.00 3.41
33 34 5.391312 AACAGTTTGCCTAATTCACATCC 57.609 39.130 0.00 0.00 0.00 3.51
34 35 6.146021 CCAAAACAGTTTGCCTAATTCACATC 59.854 38.462 0.00 0.00 42.44 3.06
35 36 5.990996 CCAAAACAGTTTGCCTAATTCACAT 59.009 36.000 0.00 0.00 42.44 3.21
36 37 5.105146 ACCAAAACAGTTTGCCTAATTCACA 60.105 36.000 0.00 0.00 42.44 3.58
37 38 5.356426 ACCAAAACAGTTTGCCTAATTCAC 58.644 37.500 0.00 0.00 42.44 3.18
38 39 5.606348 ACCAAAACAGTTTGCCTAATTCA 57.394 34.783 0.00 0.00 42.44 2.57
39 40 7.709182 AGTTAACCAAAACAGTTTGCCTAATTC 59.291 33.333 0.88 0.00 42.44 2.17
40 41 7.561251 AGTTAACCAAAACAGTTTGCCTAATT 58.439 30.769 0.88 0.00 42.44 1.40
41 42 7.119709 AGTTAACCAAAACAGTTTGCCTAAT 57.880 32.000 0.88 0.00 42.44 1.73
42 43 6.532988 AGTTAACCAAAACAGTTTGCCTAA 57.467 33.333 0.88 0.00 42.44 2.69
43 44 7.826918 ATAGTTAACCAAAACAGTTTGCCTA 57.173 32.000 0.88 0.00 42.44 3.93
44 45 6.724893 ATAGTTAACCAAAACAGTTTGCCT 57.275 33.333 0.88 0.00 42.44 4.75
45 46 7.654568 ACTATAGTTAACCAAAACAGTTTGCC 58.345 34.615 0.00 0.00 42.44 4.52
46 47 8.964150 CAACTATAGTTAACCAAAACAGTTTGC 58.036 33.333 17.62 0.00 38.63 3.68
49 50 9.398538 TGACAACTATAGTTAACCAAAACAGTT 57.601 29.630 17.62 1.52 36.32 3.16
50 51 8.967664 TGACAACTATAGTTAACCAAAACAGT 57.032 30.769 17.62 7.58 36.32 3.55
51 52 9.825972 CATGACAACTATAGTTAACCAAAACAG 57.174 33.333 17.62 4.52 36.32 3.16
52 53 9.344772 ACATGACAACTATAGTTAACCAAAACA 57.655 29.630 17.62 9.33 36.32 2.83
53 54 9.821662 GACATGACAACTATAGTTAACCAAAAC 57.178 33.333 17.62 3.83 36.32 2.43
54 55 9.787435 AGACATGACAACTATAGTTAACCAAAA 57.213 29.630 17.62 1.16 36.32 2.44
68 69 8.548877 ACTACCCATAAATTAGACATGACAACT 58.451 33.333 0.00 0.00 0.00 3.16
69 70 8.732746 ACTACCCATAAATTAGACATGACAAC 57.267 34.615 0.00 0.00 0.00 3.32
70 71 9.173021 CAACTACCCATAAATTAGACATGACAA 57.827 33.333 0.00 0.00 0.00 3.18
71 72 7.282224 GCAACTACCCATAAATTAGACATGACA 59.718 37.037 0.00 0.00 0.00 3.58
72 73 7.255139 GGCAACTACCCATAAATTAGACATGAC 60.255 40.741 0.00 0.00 0.00 3.06
73 74 6.770785 GGCAACTACCCATAAATTAGACATGA 59.229 38.462 0.00 0.00 0.00 3.07
74 75 6.545666 TGGCAACTACCCATAAATTAGACATG 59.454 38.462 0.00 0.00 37.61 3.21
75 76 6.546034 GTGGCAACTACCCATAAATTAGACAT 59.454 38.462 0.00 0.00 34.34 3.06
76 77 5.883673 GTGGCAACTACCCATAAATTAGACA 59.116 40.000 0.00 0.00 34.34 3.41
77 78 5.007332 CGTGGCAACTACCCATAAATTAGAC 59.993 44.000 0.00 0.00 34.34 2.59
78 79 5.120399 CGTGGCAACTACCCATAAATTAGA 58.880 41.667 0.00 0.00 34.34 2.10
79 80 4.879545 ACGTGGCAACTACCCATAAATTAG 59.120 41.667 0.00 0.00 34.34 1.73
80 81 4.636648 CACGTGGCAACTACCCATAAATTA 59.363 41.667 7.95 0.00 34.34 1.40
81 82 3.442273 CACGTGGCAACTACCCATAAATT 59.558 43.478 7.95 0.00 34.34 1.82
82 83 3.013921 CACGTGGCAACTACCCATAAAT 58.986 45.455 7.95 0.00 34.34 1.40
83 84 2.428491 CACGTGGCAACTACCCATAAA 58.572 47.619 7.95 0.00 34.34 1.40
84 85 1.946747 GCACGTGGCAACTACCCATAA 60.947 52.381 18.88 0.00 43.97 1.90
85 86 0.391927 GCACGTGGCAACTACCCATA 60.392 55.000 18.88 0.00 43.97 2.74
86 87 1.674322 GCACGTGGCAACTACCCAT 60.674 57.895 18.88 0.00 43.97 4.00
87 88 2.281208 GCACGTGGCAACTACCCA 60.281 61.111 18.88 0.00 43.97 4.51
96 97 1.795170 ATGGTTTGAGTGCACGTGGC 61.795 55.000 18.88 10.30 45.13 5.01
97 98 1.464608 CTATGGTTTGAGTGCACGTGG 59.535 52.381 18.88 0.00 0.00 4.94
98 99 2.143122 ACTATGGTTTGAGTGCACGTG 58.857 47.619 12.28 12.28 0.00 4.49
99 100 2.543777 ACTATGGTTTGAGTGCACGT 57.456 45.000 12.01 0.00 0.00 4.49
100 101 2.665519 GCAACTATGGTTTGAGTGCACG 60.666 50.000 12.01 0.00 32.73 5.34
101 102 2.351738 GGCAACTATGGTTTGAGTGCAC 60.352 50.000 9.40 9.40 32.73 4.57
102 103 1.885887 GGCAACTATGGTTTGAGTGCA 59.114 47.619 5.37 0.00 32.73 4.57
103 104 1.885887 TGGCAACTATGGTTTGAGTGC 59.114 47.619 0.00 0.00 32.73 4.40
104 105 5.357878 ACATATGGCAACTATGGTTTGAGTG 59.642 40.000 7.80 0.00 32.73 3.51
105 106 5.357878 CACATATGGCAACTATGGTTTGAGT 59.642 40.000 7.80 0.00 32.73 3.41
106 107 5.734220 GCACATATGGCAACTATGGTTTGAG 60.734 44.000 7.80 0.00 32.73 3.02
107 108 4.097741 GCACATATGGCAACTATGGTTTGA 59.902 41.667 7.80 0.00 32.73 2.69
108 109 4.098349 AGCACATATGGCAACTATGGTTTG 59.902 41.667 15.63 3.87 32.73 2.93
109 110 4.280819 AGCACATATGGCAACTATGGTTT 58.719 39.130 15.63 0.00 32.73 3.27
110 111 3.902218 AGCACATATGGCAACTATGGTT 58.098 40.909 15.63 0.00 35.86 3.67
111 112 3.582998 AGCACATATGGCAACTATGGT 57.417 42.857 15.63 2.80 32.06 3.55
112 113 4.216257 GGTAAGCACATATGGCAACTATGG 59.784 45.833 15.63 3.70 32.06 2.74
113 114 5.065914 AGGTAAGCACATATGGCAACTATG 58.934 41.667 15.63 6.57 33.65 2.23
114 115 5.310409 AGGTAAGCACATATGGCAACTAT 57.690 39.130 15.63 6.57 37.61 2.12
115 116 4.771114 AGGTAAGCACATATGGCAACTA 57.229 40.909 15.63 4.63 37.61 2.24
116 117 3.652057 AGGTAAGCACATATGGCAACT 57.348 42.857 15.63 4.34 37.61 3.16
117 118 4.451900 ACTAGGTAAGCACATATGGCAAC 58.548 43.478 15.63 12.81 0.00 4.17
118 119 4.771114 ACTAGGTAAGCACATATGGCAA 57.229 40.909 15.63 3.97 0.00 4.52
119 120 4.450976 CAACTAGGTAAGCACATATGGCA 58.549 43.478 15.63 0.00 0.00 4.92
120 121 3.251004 GCAACTAGGTAAGCACATATGGC 59.749 47.826 7.80 7.80 0.00 4.40
121 122 3.815401 GGCAACTAGGTAAGCACATATGG 59.185 47.826 7.80 0.00 0.00 2.74
122 123 4.450976 TGGCAACTAGGTAAGCACATATG 58.549 43.478 0.00 0.00 37.61 1.78
123 124 4.771114 TGGCAACTAGGTAAGCACATAT 57.229 40.909 0.00 0.00 37.61 1.78
124 125 4.080582 ACATGGCAACTAGGTAAGCACATA 60.081 41.667 0.00 0.00 37.61 2.29
125 126 3.282021 CATGGCAACTAGGTAAGCACAT 58.718 45.455 0.00 0.00 37.61 3.21
126 127 2.039746 ACATGGCAACTAGGTAAGCACA 59.960 45.455 0.00 0.00 37.61 4.57
127 128 2.420022 CACATGGCAACTAGGTAAGCAC 59.580 50.000 0.00 0.00 37.61 4.40
128 129 2.039746 ACACATGGCAACTAGGTAAGCA 59.960 45.455 0.00 0.00 37.61 3.91
129 130 2.420022 CACACATGGCAACTAGGTAAGC 59.580 50.000 0.00 0.00 37.61 3.09
130 131 3.674997 ACACACATGGCAACTAGGTAAG 58.325 45.455 0.00 0.00 37.61 2.34
131 132 3.780804 ACACACATGGCAACTAGGTAA 57.219 42.857 0.00 0.00 37.61 2.85
132 133 3.780804 AACACACATGGCAACTAGGTA 57.219 42.857 0.00 0.00 37.61 3.08
133 134 2.656947 AACACACATGGCAACTAGGT 57.343 45.000 0.00 0.00 37.61 3.08
134 135 3.190535 GGTAAACACACATGGCAACTAGG 59.809 47.826 0.00 0.00 37.61 3.02
135 136 4.072131 AGGTAAACACACATGGCAACTAG 58.928 43.478 0.00 0.00 37.61 2.57
136 137 3.818210 CAGGTAAACACACATGGCAACTA 59.182 43.478 0.00 0.00 37.61 2.24
137 138 2.622942 CAGGTAAACACACATGGCAACT 59.377 45.455 0.00 0.00 37.61 3.16
138 139 2.288152 CCAGGTAAACACACATGGCAAC 60.288 50.000 0.00 0.00 42.80 4.17
139 140 1.959985 CCAGGTAAACACACATGGCAA 59.040 47.619 0.00 0.00 42.80 4.52
140 141 1.614996 CCAGGTAAACACACATGGCA 58.385 50.000 0.00 0.00 42.80 4.92
143 144 2.288152 GGCAACCAGGTAAACACACATG 60.288 50.000 0.00 0.00 0.00 3.21
144 145 1.960689 GGCAACCAGGTAAACACACAT 59.039 47.619 0.00 0.00 0.00 3.21
145 146 1.341089 TGGCAACCAGGTAAACACACA 60.341 47.619 0.00 0.00 0.00 3.72
146 147 1.066454 GTGGCAACCAGGTAAACACAC 59.934 52.381 13.05 6.40 32.34 3.82
147 148 1.394618 GTGGCAACCAGGTAAACACA 58.605 50.000 13.05 0.00 32.34 3.72
148 149 0.309612 CGTGGCAACCAGGTAAACAC 59.690 55.000 0.00 1.29 35.03 3.32
149 150 2.709170 CGTGGCAACCAGGTAAACA 58.291 52.632 0.00 0.00 35.03 2.83
155 156 2.314647 CGTGTACGTGGCAACCAGG 61.315 63.158 0.00 4.83 44.01 4.45
156 157 2.950172 GCGTGTACGTGGCAACCAG 61.950 63.158 0.00 0.00 42.22 4.00
157 158 2.968156 GCGTGTACGTGGCAACCA 60.968 61.111 0.00 0.00 42.22 3.67
158 159 2.535788 TTGCGTGTACGTGGCAACC 61.536 57.895 12.28 1.81 41.34 3.77
159 160 3.015677 TTGCGTGTACGTGGCAAC 58.984 55.556 12.28 0.00 41.34 4.17
161 162 1.160946 ACAATTGCGTGTACGTGGCA 61.161 50.000 5.05 0.00 42.22 4.92
162 163 0.791422 TACAATTGCGTGTACGTGGC 59.209 50.000 5.05 0.00 42.22 5.01
163 164 2.063266 ACTACAATTGCGTGTACGTGG 58.937 47.619 5.05 0.00 42.22 4.94
164 165 3.465907 CAACTACAATTGCGTGTACGTG 58.534 45.455 5.05 0.00 42.22 4.49
165 166 2.096614 GCAACTACAATTGCGTGTACGT 60.097 45.455 5.05 0.00 45.08 3.57
166 167 2.492001 GCAACTACAATTGCGTGTACG 58.508 47.619 5.05 0.00 45.08 3.67
174 175 5.344665 CGTTGGTAAATGGCAACTACAATTG 59.655 40.000 3.24 3.24 37.61 2.32
175 176 5.241949 TCGTTGGTAAATGGCAACTACAATT 59.758 36.000 10.42 0.00 37.61 2.32
176 177 4.762765 TCGTTGGTAAATGGCAACTACAAT 59.237 37.500 10.42 0.00 37.61 2.71
177 178 4.135306 TCGTTGGTAAATGGCAACTACAA 58.865 39.130 10.42 2.33 37.61 2.41
178 179 3.741249 TCGTTGGTAAATGGCAACTACA 58.259 40.909 10.42 0.00 37.61 2.74
179 180 4.752661 TTCGTTGGTAAATGGCAACTAC 57.247 40.909 0.00 0.00 37.61 2.73
180 181 5.004448 TGATTCGTTGGTAAATGGCAACTA 58.996 37.500 0.00 0.00 37.61 2.24
181 182 3.823873 TGATTCGTTGGTAAATGGCAACT 59.176 39.130 0.00 0.00 37.61 3.16
182 183 4.167554 TGATTCGTTGGTAAATGGCAAC 57.832 40.909 0.00 0.00 0.00 4.17
183 184 5.650266 ACTATGATTCGTTGGTAAATGGCAA 59.350 36.000 0.00 0.00 0.00 4.52
184 185 5.189928 ACTATGATTCGTTGGTAAATGGCA 58.810 37.500 0.00 0.00 0.00 4.92
185 186 5.751243 ACTATGATTCGTTGGTAAATGGC 57.249 39.130 0.00 0.00 0.00 4.40
186 187 7.083875 ACAACTATGATTCGTTGGTAAATGG 57.916 36.000 10.57 0.00 43.52 3.16
187 188 7.747888 TGACAACTATGATTCGTTGGTAAATG 58.252 34.615 10.57 0.00 43.52 2.32
188 189 7.915293 TGACAACTATGATTCGTTGGTAAAT 57.085 32.000 10.57 0.00 43.52 1.40
189 190 7.389330 ACATGACAACTATGATTCGTTGGTAAA 59.611 33.333 0.00 0.00 43.52 2.01
190 191 6.876789 ACATGACAACTATGATTCGTTGGTAA 59.123 34.615 0.00 0.00 43.52 2.85
191 192 6.312672 CACATGACAACTATGATTCGTTGGTA 59.687 38.462 0.00 2.20 43.52 3.25
192 193 5.122239 CACATGACAACTATGATTCGTTGGT 59.878 40.000 0.00 0.00 43.52 3.67
193 194 5.122239 ACACATGACAACTATGATTCGTTGG 59.878 40.000 0.00 0.00 43.52 3.77
194 195 6.017325 CACACATGACAACTATGATTCGTTG 58.983 40.000 0.00 0.00 44.48 4.10
195 196 5.700832 ACACACATGACAACTATGATTCGTT 59.299 36.000 0.00 0.00 0.00 3.85
196 197 5.237815 ACACACATGACAACTATGATTCGT 58.762 37.500 0.00 0.00 0.00 3.85
197 198 5.784750 ACACACATGACAACTATGATTCG 57.215 39.130 0.00 0.00 0.00 3.34
198 199 7.962918 GGTAAACACACATGACAACTATGATTC 59.037 37.037 0.00 0.00 0.00 2.52
199 200 7.665559 AGGTAAACACACATGACAACTATGATT 59.334 33.333 0.00 0.00 0.00 2.57
200 201 7.168219 AGGTAAACACACATGACAACTATGAT 58.832 34.615 0.00 0.00 0.00 2.45
201 202 6.530120 AGGTAAACACACATGACAACTATGA 58.470 36.000 0.00 0.00 0.00 2.15
202 203 6.801539 AGGTAAACACACATGACAACTATG 57.198 37.500 0.00 0.00 0.00 2.23
203 204 7.676947 ACTAGGTAAACACACATGACAACTAT 58.323 34.615 0.00 0.00 0.00 2.12
204 205 7.058023 ACTAGGTAAACACACATGACAACTA 57.942 36.000 0.00 0.00 0.00 2.24
205 206 5.925509 ACTAGGTAAACACACATGACAACT 58.074 37.500 0.00 0.00 0.00 3.16
206 207 6.427150 CAACTAGGTAAACACACATGACAAC 58.573 40.000 0.00 0.00 0.00 3.32
207 208 5.008217 GCAACTAGGTAAACACACATGACAA 59.992 40.000 0.00 0.00 0.00 3.18
208 209 4.513692 GCAACTAGGTAAACACACATGACA 59.486 41.667 0.00 0.00 0.00 3.58
209 210 4.083484 GGCAACTAGGTAAACACACATGAC 60.083 45.833 0.00 0.00 0.00 3.06
210 211 4.069304 GGCAACTAGGTAAACACACATGA 58.931 43.478 0.00 0.00 0.00 3.07
211 212 3.120338 CGGCAACTAGGTAAACACACATG 60.120 47.826 0.00 0.00 0.00 3.21
212 213 3.071479 CGGCAACTAGGTAAACACACAT 58.929 45.455 0.00 0.00 0.00 3.21
213 214 2.485903 CGGCAACTAGGTAAACACACA 58.514 47.619 0.00 0.00 0.00 3.72
214 215 1.196127 GCGGCAACTAGGTAAACACAC 59.804 52.381 0.00 0.00 0.00 3.82
215 216 1.515081 GCGGCAACTAGGTAAACACA 58.485 50.000 0.00 0.00 0.00 3.72
216 217 0.441145 CGCGGCAACTAGGTAAACAC 59.559 55.000 0.00 0.00 0.00 3.32
217 218 0.033781 ACGCGGCAACTAGGTAAACA 59.966 50.000 12.47 0.00 0.00 2.83
218 219 1.994916 TACGCGGCAACTAGGTAAAC 58.005 50.000 12.47 0.00 0.00 2.01
219 220 2.542597 CATACGCGGCAACTAGGTAAA 58.457 47.619 12.47 0.00 0.00 2.01
220 221 1.803625 GCATACGCGGCAACTAGGTAA 60.804 52.381 12.47 0.00 0.00 2.85
221 222 0.249155 GCATACGCGGCAACTAGGTA 60.249 55.000 12.47 0.00 0.00 3.08
222 223 1.520787 GCATACGCGGCAACTAGGT 60.521 57.895 12.47 0.00 0.00 3.08
223 224 3.319904 GCATACGCGGCAACTAGG 58.680 61.111 12.47 0.00 0.00 3.02
234 235 1.497278 AACTGCAGTTGCGCATACG 59.503 52.632 30.66 3.08 45.83 3.06
243 244 3.012518 GTGATAGATGGCAACTGCAGTT 58.987 45.455 26.36 26.36 44.36 3.16
244 245 2.636830 GTGATAGATGGCAACTGCAGT 58.363 47.619 15.25 15.25 44.36 4.40
245 246 1.945394 GGTGATAGATGGCAACTGCAG 59.055 52.381 13.48 13.48 44.36 4.41
246 247 1.281577 TGGTGATAGATGGCAACTGCA 59.718 47.619 7.62 2.98 44.36 4.41
247 248 2.042686 TGGTGATAGATGGCAACTGC 57.957 50.000 7.62 0.28 41.14 4.40
248 249 3.742882 CGTATGGTGATAGATGGCAACTG 59.257 47.826 7.62 0.00 37.61 3.16
249 250 3.641436 TCGTATGGTGATAGATGGCAACT 59.359 43.478 1.95 1.95 37.61 3.16
250 251 3.990092 TCGTATGGTGATAGATGGCAAC 58.010 45.455 0.00 0.00 0.00 4.17
251 252 4.377021 GTTCGTATGGTGATAGATGGCAA 58.623 43.478 0.00 0.00 0.00 4.52
252 253 3.552068 CGTTCGTATGGTGATAGATGGCA 60.552 47.826 0.00 0.00 0.00 4.92
253 254 2.987149 CGTTCGTATGGTGATAGATGGC 59.013 50.000 0.00 0.00 0.00 4.40
254 255 4.227538 GACGTTCGTATGGTGATAGATGG 58.772 47.826 0.00 0.00 0.00 3.51
255 256 3.906601 CGACGTTCGTATGGTGATAGATG 59.093 47.826 0.00 0.00 34.72 2.90
256 257 4.143194 CGACGTTCGTATGGTGATAGAT 57.857 45.455 0.00 0.00 34.72 1.98
257 258 3.597377 CGACGTTCGTATGGTGATAGA 57.403 47.619 0.00 0.00 34.72 1.98
269 270 4.986587 TCGCCCACACGACGTTCG 62.987 66.667 0.00 0.00 46.93 3.95
270 271 2.654912 CTTCGCCCACACGACGTTC 61.655 63.158 0.00 0.00 42.78 3.95
271 272 2.660552 CTTCGCCCACACGACGTT 60.661 61.111 0.00 0.00 42.78 3.99
272 273 3.553437 CTCTTCGCCCACACGACGT 62.553 63.158 0.00 0.00 42.78 4.34
273 274 2.805353 CTCTTCGCCCACACGACG 60.805 66.667 0.00 0.00 42.78 5.12
274 275 3.112709 GCTCTTCGCCCACACGAC 61.113 66.667 0.00 0.00 42.78 4.34
275 276 3.573772 CTGCTCTTCGCCCACACGA 62.574 63.158 0.00 0.00 41.04 4.35
276 277 3.114616 CTGCTCTTCGCCCACACG 61.115 66.667 0.00 0.00 38.05 4.49
277 278 1.569479 GAACTGCTCTTCGCCCACAC 61.569 60.000 0.00 0.00 38.05 3.82
278 279 1.301716 GAACTGCTCTTCGCCCACA 60.302 57.895 0.00 0.00 38.05 4.17
279 280 1.301716 TGAACTGCTCTTCGCCCAC 60.302 57.895 0.00 0.00 38.05 4.61
280 281 1.301716 GTGAACTGCTCTTCGCCCA 60.302 57.895 0.00 0.00 38.05 5.36
281 282 2.035442 GGTGAACTGCTCTTCGCCC 61.035 63.158 12.93 2.45 42.73 6.13
282 283 2.035442 GGGTGAACTGCTCTTCGCC 61.035 63.158 14.74 14.74 46.26 5.54
283 284 1.301716 TGGGTGAACTGCTCTTCGC 60.302 57.895 0.00 0.00 39.77 4.70
284 285 0.249868 TGTGGGTGAACTGCTCTTCG 60.250 55.000 0.00 0.00 0.00 3.79
285 286 2.191128 ATGTGGGTGAACTGCTCTTC 57.809 50.000 0.00 0.00 0.00 2.87
286 287 2.612972 CGTATGTGGGTGAACTGCTCTT 60.613 50.000 0.00 0.00 0.00 2.85
287 288 1.066858 CGTATGTGGGTGAACTGCTCT 60.067 52.381 0.00 0.00 0.00 4.09
288 289 1.359848 CGTATGTGGGTGAACTGCTC 58.640 55.000 0.00 0.00 0.00 4.26
289 290 0.673644 GCGTATGTGGGTGAACTGCT 60.674 55.000 0.00 0.00 0.00 4.24
290 291 1.794222 GCGTATGTGGGTGAACTGC 59.206 57.895 0.00 0.00 0.00 4.40
291 292 0.669318 ACGCGTATGTGGGTGAACTG 60.669 55.000 11.67 0.00 33.30 3.16
292 293 1.669440 ACGCGTATGTGGGTGAACT 59.331 52.632 11.67 0.00 33.30 3.01
293 294 4.272100 ACGCGTATGTGGGTGAAC 57.728 55.556 11.67 0.00 33.30 3.18
300 301 0.669318 AACCAGTCCACGCGTATGTG 60.669 55.000 13.44 7.28 39.60 3.21
301 302 0.669318 CAACCAGTCCACGCGTATGT 60.669 55.000 13.44 0.00 0.00 2.29
302 303 1.358725 CCAACCAGTCCACGCGTATG 61.359 60.000 13.44 6.51 0.00 2.39
303 304 1.079405 CCAACCAGTCCACGCGTAT 60.079 57.895 13.44 0.00 0.00 3.06
304 305 2.340809 CCAACCAGTCCACGCGTA 59.659 61.111 13.44 0.00 0.00 4.42
305 306 3.857038 ACCAACCAGTCCACGCGT 61.857 61.111 5.58 5.58 0.00 6.01
306 307 3.345808 CACCAACCAGTCCACGCG 61.346 66.667 3.53 3.53 0.00 6.01
307 308 2.110213 TCACCAACCAGTCCACGC 59.890 61.111 0.00 0.00 0.00 5.34
308 309 0.880278 CAGTCACCAACCAGTCCACG 60.880 60.000 0.00 0.00 0.00 4.94
309 310 0.180406 ACAGTCACCAACCAGTCCAC 59.820 55.000 0.00 0.00 0.00 4.02
310 311 0.180171 CACAGTCACCAACCAGTCCA 59.820 55.000 0.00 0.00 0.00 4.02
311 312 0.180406 ACACAGTCACCAACCAGTCC 59.820 55.000 0.00 0.00 0.00 3.85
312 313 1.134521 TCACACAGTCACCAACCAGTC 60.135 52.381 0.00 0.00 0.00 3.51
313 314 0.908910 TCACACAGTCACCAACCAGT 59.091 50.000 0.00 0.00 0.00 4.00
314 315 1.586422 CTCACACAGTCACCAACCAG 58.414 55.000 0.00 0.00 0.00 4.00
315 316 0.463654 GCTCACACAGTCACCAACCA 60.464 55.000 0.00 0.00 0.00 3.67
316 317 1.498865 CGCTCACACAGTCACCAACC 61.499 60.000 0.00 0.00 0.00 3.77
317 318 1.498865 CCGCTCACACAGTCACCAAC 61.499 60.000 0.00 0.00 0.00 3.77
318 319 1.227527 CCGCTCACACAGTCACCAA 60.228 57.895 0.00 0.00 0.00 3.67
319 320 2.421314 CCGCTCACACAGTCACCA 59.579 61.111 0.00 0.00 0.00 4.17
320 321 2.357517 CCCGCTCACACAGTCACC 60.358 66.667 0.00 0.00 0.00 4.02
321 322 0.531974 TTTCCCGCTCACACAGTCAC 60.532 55.000 0.00 0.00 0.00 3.67
322 323 0.396435 ATTTCCCGCTCACACAGTCA 59.604 50.000 0.00 0.00 0.00 3.41
323 324 0.798776 CATTTCCCGCTCACACAGTC 59.201 55.000 0.00 0.00 0.00 3.51
324 325 0.606401 CCATTTCCCGCTCACACAGT 60.606 55.000 0.00 0.00 0.00 3.55
325 326 0.606401 ACCATTTCCCGCTCACACAG 60.606 55.000 0.00 0.00 0.00 3.66
326 327 0.179004 AACCATTTCCCGCTCACACA 60.179 50.000 0.00 0.00 0.00 3.72
327 328 0.521735 GAACCATTTCCCGCTCACAC 59.478 55.000 0.00 0.00 0.00 3.82
328 329 0.953471 CGAACCATTTCCCGCTCACA 60.953 55.000 0.00 0.00 0.00 3.58
329 330 1.794222 CGAACCATTTCCCGCTCAC 59.206 57.895 0.00 0.00 0.00 3.51
330 331 2.038269 GCGAACCATTTCCCGCTCA 61.038 57.895 0.00 0.00 43.75 4.26
331 332 2.761195 GGCGAACCATTTCCCGCTC 61.761 63.158 0.00 0.00 46.02 5.03
332 333 2.750237 GGCGAACCATTTCCCGCT 60.750 61.111 0.00 0.00 46.02 5.52
333 334 3.822192 GGGCGAACCATTTCCCGC 61.822 66.667 0.00 0.00 46.04 6.13
334 335 2.360600 TGGGCGAACCATTTCCCG 60.361 61.111 0.00 0.00 46.80 5.14
376 377 3.612247 CTCGCCCACAAGACCCCAG 62.612 68.421 0.00 0.00 0.00 4.45
377 378 3.636231 CTCGCCCACAAGACCCCA 61.636 66.667 0.00 0.00 0.00 4.96
382 383 4.742201 GAGCGCTCGCCCACAAGA 62.742 66.667 23.61 0.00 43.17 3.02
383 384 4.749310 AGAGCGCTCGCCCACAAG 62.749 66.667 30.39 0.00 43.17 3.16
395 396 3.964221 TTGCGTAGGCGTCAGAGCG 62.964 63.158 2.53 0.00 44.10 5.03
396 397 2.126071 TTGCGTAGGCGTCAGAGC 60.126 61.111 2.53 0.00 44.10 4.09
397 398 2.161486 GCTTGCGTAGGCGTCAGAG 61.161 63.158 2.53 0.00 44.10 3.35
398 399 2.126071 GCTTGCGTAGGCGTCAGA 60.126 61.111 2.53 0.00 44.10 3.27
399 400 3.545481 CGCTTGCGTAGGCGTCAG 61.545 66.667 21.19 0.17 45.34 3.51
404 405 2.931386 CATAGCGCTTGCGTAGGC 59.069 61.111 18.68 0.00 45.69 3.93
405 406 2.598632 GGCATAGCGCTTGCGTAGG 61.599 63.158 26.72 10.61 45.69 3.18
406 407 0.318699 TAGGCATAGCGCTTGCGTAG 60.319 55.000 27.36 12.05 45.69 3.51
407 408 0.596600 GTAGGCATAGCGCTTGCGTA 60.597 55.000 27.36 27.36 45.69 4.42
408 409 1.883084 GTAGGCATAGCGCTTGCGT 60.883 57.895 28.79 28.79 45.69 5.24
409 410 2.931386 GTAGGCATAGCGCTTGCG 59.069 61.111 26.72 10.90 45.69 4.85
410 411 1.883084 ACGTAGGCATAGCGCTTGC 60.883 57.895 26.26 26.26 41.91 4.01
411 412 1.490693 CCACGTAGGCATAGCGCTTG 61.491 60.000 18.68 15.12 41.91 4.01
412 413 1.227263 CCACGTAGGCATAGCGCTT 60.227 57.895 18.68 0.00 41.91 4.68
413 414 2.417516 CCACGTAGGCATAGCGCT 59.582 61.111 17.26 17.26 41.91 5.92
422 423 1.204704 TGAATCTCAGTGCCACGTAGG 59.795 52.381 0.00 0.00 41.84 3.18
423 424 2.654749 TGAATCTCAGTGCCACGTAG 57.345 50.000 0.00 0.00 0.00 3.51
424 425 3.610040 AATGAATCTCAGTGCCACGTA 57.390 42.857 0.00 0.00 0.00 3.57
425 426 2.479566 AATGAATCTCAGTGCCACGT 57.520 45.000 0.00 0.00 0.00 4.49
426 427 4.183865 TCTAAATGAATCTCAGTGCCACG 58.816 43.478 0.00 0.00 0.00 4.94
427 428 6.690194 ATTCTAAATGAATCTCAGTGCCAC 57.310 37.500 0.00 0.00 41.17 5.01
428 429 6.885918 TGAATTCTAAATGAATCTCAGTGCCA 59.114 34.615 7.05 0.00 43.99 4.92
429 430 7.325660 TGAATTCTAAATGAATCTCAGTGCC 57.674 36.000 7.05 0.00 43.99 5.01
430 431 8.404000 ACATGAATTCTAAATGAATCTCAGTGC 58.596 33.333 7.05 0.00 43.99 4.40
457 458 8.592809 TGCTTTGATCCACCTTAATTATGTTTT 58.407 29.630 0.00 0.00 0.00 2.43
458 459 8.133024 TGCTTTGATCCACCTTAATTATGTTT 57.867 30.769 0.00 0.00 0.00 2.83
459 460 7.716799 TGCTTTGATCCACCTTAATTATGTT 57.283 32.000 0.00 0.00 0.00 2.71
460 461 7.342799 ACATGCTTTGATCCACCTTAATTATGT 59.657 33.333 0.00 0.00 0.00 2.29
461 462 7.650504 CACATGCTTTGATCCACCTTAATTATG 59.349 37.037 0.00 0.00 0.00 1.90
462 463 7.201938 CCACATGCTTTGATCCACCTTAATTAT 60.202 37.037 0.00 0.00 0.00 1.28
463 464 6.096705 CCACATGCTTTGATCCACCTTAATTA 59.903 38.462 0.00 0.00 0.00 1.40
464 465 5.105228 CCACATGCTTTGATCCACCTTAATT 60.105 40.000 0.00 0.00 0.00 1.40
465 466 4.403432 CCACATGCTTTGATCCACCTTAAT 59.597 41.667 0.00 0.00 0.00 1.40
466 467 3.763360 CCACATGCTTTGATCCACCTTAA 59.237 43.478 0.00 0.00 0.00 1.85
467 468 3.010027 TCCACATGCTTTGATCCACCTTA 59.990 43.478 0.00 0.00 0.00 2.69
468 469 2.173519 CCACATGCTTTGATCCACCTT 58.826 47.619 0.00 0.00 0.00 3.50
469 470 1.355381 TCCACATGCTTTGATCCACCT 59.645 47.619 0.00 0.00 0.00 4.00
470 471 1.474077 GTCCACATGCTTTGATCCACC 59.526 52.381 0.00 0.00 0.00 4.61
471 472 1.131126 CGTCCACATGCTTTGATCCAC 59.869 52.381 0.00 0.00 0.00 4.02
472 473 1.003003 TCGTCCACATGCTTTGATCCA 59.997 47.619 0.00 0.00 0.00 3.41
473 474 1.737838 TCGTCCACATGCTTTGATCC 58.262 50.000 0.00 0.00 0.00 3.36
474 475 2.679837 ACATCGTCCACATGCTTTGATC 59.320 45.455 0.00 0.00 0.00 2.92
475 476 2.421073 CACATCGTCCACATGCTTTGAT 59.579 45.455 0.00 0.00 0.00 2.57
476 477 1.805943 CACATCGTCCACATGCTTTGA 59.194 47.619 0.00 0.00 0.00 2.69
477 478 1.536766 ACACATCGTCCACATGCTTTG 59.463 47.619 0.00 0.00 0.00 2.77
478 479 1.896220 ACACATCGTCCACATGCTTT 58.104 45.000 0.00 0.00 0.00 3.51
479 480 2.760634 TACACATCGTCCACATGCTT 57.239 45.000 0.00 0.00 0.00 3.91
480 481 2.760634 TTACACATCGTCCACATGCT 57.239 45.000 0.00 0.00 0.00 3.79
481 482 2.095853 CCTTTACACATCGTCCACATGC 59.904 50.000 0.00 0.00 0.00 4.06
482 483 3.125146 CACCTTTACACATCGTCCACATG 59.875 47.826 0.00 0.00 0.00 3.21
483 484 3.244422 ACACCTTTACACATCGTCCACAT 60.244 43.478 0.00 0.00 0.00 3.21
484 485 2.103432 ACACCTTTACACATCGTCCACA 59.897 45.455 0.00 0.00 0.00 4.17
485 486 2.762745 ACACCTTTACACATCGTCCAC 58.237 47.619 0.00 0.00 0.00 4.02
486 487 3.478857 AACACCTTTACACATCGTCCA 57.521 42.857 0.00 0.00 0.00 4.02
487 488 7.781548 ATAATAACACCTTTACACATCGTCC 57.218 36.000 0.00 0.00 0.00 4.79
488 489 9.485591 CAAATAATAACACCTTTACACATCGTC 57.514 33.333 0.00 0.00 0.00 4.20
489 490 8.455682 CCAAATAATAACACCTTTACACATCGT 58.544 33.333 0.00 0.00 0.00 3.73
490 491 7.913297 CCCAAATAATAACACCTTTACACATCG 59.087 37.037 0.00 0.00 0.00 3.84
491 492 8.962679 TCCCAAATAATAACACCTTTACACATC 58.037 33.333 0.00 0.00 0.00 3.06
492 493 8.887264 TCCCAAATAATAACACCTTTACACAT 57.113 30.769 0.00 0.00 0.00 3.21
493 494 8.887264 ATCCCAAATAATAACACCTTTACACA 57.113 30.769 0.00 0.00 0.00 3.72
529 530 8.452534 TCTTTGTAAGTTGCGTTCTAAAGAAAA 58.547 29.630 0.00 0.00 35.58 2.29
533 534 6.846283 CAGTCTTTGTAAGTTGCGTTCTAAAG 59.154 38.462 0.00 0.00 0.00 1.85
870 1321 1.337167 GGCCTTGTGTTTTGATCTGGC 60.337 52.381 0.00 0.00 38.49 4.85
959 1411 4.617762 GCGGGCTATATATACGCTTATCCC 60.618 50.000 15.29 0.82 46.02 3.85
986 1438 2.281484 TTCAGTTCACCCAGCGCC 60.281 61.111 2.29 0.00 0.00 6.53
990 1442 1.726853 GATCGGTTCAGTTCACCCAG 58.273 55.000 0.00 0.00 0.00 4.45
1019 1471 3.654020 GCCTTGATCATCGCCGCC 61.654 66.667 0.00 0.00 0.00 6.13
1338 1790 0.996762 TCCTCCTCCTCCTCCTCCTC 60.997 65.000 0.00 0.00 0.00 3.71
1339 1791 0.998945 CTCCTCCTCCTCCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
1340 1792 1.541672 CTCCTCCTCCTCCTCCTCC 59.458 68.421 0.00 0.00 0.00 4.30
1911 2389 0.900182 ACGAGCTGGTCACATCCTGA 60.900 55.000 7.70 0.00 0.00 3.86
2187 2665 2.936912 GCAGCTGGAGTCGGACAGT 61.937 63.158 17.12 0.00 37.07 3.55
2217 2695 1.519455 CGAGCCGGCCTAGAAAGTG 60.519 63.158 26.15 0.00 0.00 3.16
2306 2784 9.820725 TCCAATAAATTTCTGAATATTTGGCAG 57.179 29.630 14.90 0.00 33.28 4.85
2311 2789 8.695456 ACGCCTCCAATAAATTTCTGAATATTT 58.305 29.630 0.00 12.06 0.00 1.40
2390 2868 9.832445 CAGTTCATTAGCCTTTTATAGGTAGAA 57.168 33.333 0.00 0.00 46.61 2.10
2392 2870 9.262358 GTCAGTTCATTAGCCTTTTATAGGTAG 57.738 37.037 0.00 0.00 46.61 3.18
2393 2871 7.924412 CGTCAGTTCATTAGCCTTTTATAGGTA 59.076 37.037 0.00 0.00 46.61 3.08
2394 2872 6.761714 CGTCAGTTCATTAGCCTTTTATAGGT 59.238 38.462 0.00 0.00 46.61 3.08
2404 2885 3.232213 TCTGACGTCAGTTCATTAGCC 57.768 47.619 37.21 0.11 44.12 3.93
2452 2933 1.742761 CGCCTCATCCAATGACAACT 58.257 50.000 0.00 0.00 35.06 3.16
2459 2940 2.329539 ATCCGTGCGCCTCATCCAAT 62.330 55.000 4.18 0.00 0.00 3.16
2509 2990 1.333619 GAAGCCAAGTTTCAGCGAACA 59.666 47.619 0.00 0.00 31.94 3.18
2523 3011 0.601046 CTGTGTTCGCTCTGAAGCCA 60.601 55.000 0.00 0.00 46.34 4.75
2542 3030 1.153025 GGCGAGGGGTAATTGGGAC 60.153 63.158 0.00 0.00 0.00 4.46
2553 3041 3.214250 GAGGCGAGTATGGCGAGGG 62.214 68.421 0.00 0.00 42.57 4.30
2561 3049 4.641094 CCGAATAGGAATAGAGGCGAGTAT 59.359 45.833 0.00 0.00 45.00 2.12
2563 3051 2.820787 CCGAATAGGAATAGAGGCGAGT 59.179 50.000 0.00 0.00 45.00 4.18
2583 3071 4.209866 AGGGGGATGAATGCGGCC 62.210 66.667 0.00 0.00 0.00 6.13
2586 3074 0.471617 AGAAGAGGGGGATGAATGCG 59.528 55.000 0.00 0.00 0.00 4.73
2603 3091 7.282224 CGAAAATGTGTAAATAGGGAATGGAGA 59.718 37.037 0.00 0.00 0.00 3.71
2604 3092 7.282224 TCGAAAATGTGTAAATAGGGAATGGAG 59.718 37.037 0.00 0.00 0.00 3.86
2605 3093 7.113437 TCGAAAATGTGTAAATAGGGAATGGA 58.887 34.615 0.00 0.00 0.00 3.41
2613 3121 4.260620 CCCGCCTCGAAAATGTGTAAATAG 60.261 45.833 0.00 0.00 0.00 1.73
2614 3122 3.623960 CCCGCCTCGAAAATGTGTAAATA 59.376 43.478 0.00 0.00 0.00 1.40
2624 3132 2.668212 CACTGCCCGCCTCGAAAA 60.668 61.111 0.00 0.00 0.00 2.29
2633 3141 3.800685 TTGTCACCGTCACTGCCCG 62.801 63.158 0.00 0.00 0.00 6.13
2650 3389 1.513158 CATCGGTGAGCTCGGTCTT 59.487 57.895 9.64 0.00 0.00 3.01
2673 3412 3.349006 CGCCACTCACCAGCACAC 61.349 66.667 0.00 0.00 0.00 3.82
2679 3418 4.408821 GCCCATCGCCACTCACCA 62.409 66.667 0.00 0.00 0.00 4.17
2688 3427 4.996434 CCTCATCCGGCCCATCGC 62.996 72.222 0.00 0.00 0.00 4.58
2689 3428 4.996434 GCCTCATCCGGCCCATCG 62.996 72.222 0.00 0.00 44.41 3.84
3034 3773 4.153117 GTGAATGCAGCCGAATAGGAATAG 59.847 45.833 0.00 0.00 45.00 1.73
3035 3774 4.065088 GTGAATGCAGCCGAATAGGAATA 58.935 43.478 0.00 0.00 45.00 1.75
3036 3775 2.880890 GTGAATGCAGCCGAATAGGAAT 59.119 45.455 0.00 0.00 45.00 3.01
3037 3776 2.288666 GTGAATGCAGCCGAATAGGAA 58.711 47.619 0.00 0.00 45.00 3.36
3038 3777 1.475034 GGTGAATGCAGCCGAATAGGA 60.475 52.381 0.00 0.00 45.00 2.94
3039 3778 0.947244 GGTGAATGCAGCCGAATAGG 59.053 55.000 0.00 0.00 44.97 2.57
3063 3802 3.117851 GGAATGGAGAAGTAAAGAGGGGG 60.118 52.174 0.00 0.00 0.00 5.40
3064 3803 3.117851 GGGAATGGAGAAGTAAAGAGGGG 60.118 52.174 0.00 0.00 0.00 4.79
3065 3804 3.117851 GGGGAATGGAGAAGTAAAGAGGG 60.118 52.174 0.00 0.00 0.00 4.30
3066 3805 3.523564 TGGGGAATGGAGAAGTAAAGAGG 59.476 47.826 0.00 0.00 0.00 3.69
3067 3806 4.844349 TGGGGAATGGAGAAGTAAAGAG 57.156 45.455 0.00 0.00 0.00 2.85
3068 3807 5.796502 AATGGGGAATGGAGAAGTAAAGA 57.203 39.130 0.00 0.00 0.00 2.52
3069 3808 6.889722 TGTAAATGGGGAATGGAGAAGTAAAG 59.110 38.462 0.00 0.00 0.00 1.85
3070 3809 6.661805 GTGTAAATGGGGAATGGAGAAGTAAA 59.338 38.462 0.00 0.00 0.00 2.01
3071 3810 6.184789 GTGTAAATGGGGAATGGAGAAGTAA 58.815 40.000 0.00 0.00 0.00 2.24
3072 3811 5.251932 TGTGTAAATGGGGAATGGAGAAGTA 59.748 40.000 0.00 0.00 0.00 2.24
3073 3812 4.044065 TGTGTAAATGGGGAATGGAGAAGT 59.956 41.667 0.00 0.00 0.00 3.01
3074 3813 4.599041 TGTGTAAATGGGGAATGGAGAAG 58.401 43.478 0.00 0.00 0.00 2.85
3075 3814 4.666412 TGTGTAAATGGGGAATGGAGAA 57.334 40.909 0.00 0.00 0.00 2.87
3076 3815 4.879295 ATGTGTAAATGGGGAATGGAGA 57.121 40.909 0.00 0.00 0.00 3.71
3077 3816 5.937975 AAATGTGTAAATGGGGAATGGAG 57.062 39.130 0.00 0.00 0.00 3.86
3078 3817 6.694445 AAAAATGTGTAAATGGGGAATGGA 57.306 33.333 0.00 0.00 0.00 3.41
3098 3837 1.967494 GTCACCGCCCGCCTAAAAA 60.967 57.895 0.00 0.00 0.00 1.94
3099 3838 2.358984 GTCACCGCCCGCCTAAAA 60.359 61.111 0.00 0.00 0.00 1.52
3100 3839 4.745751 CGTCACCGCCCGCCTAAA 62.746 66.667 0.00 0.00 0.00 1.85
3107 3846 4.612412 TTGTCACCGTCACCGCCC 62.612 66.667 0.00 0.00 0.00 6.13
3108 3847 3.041940 CTTGTCACCGTCACCGCC 61.042 66.667 0.00 0.00 0.00 6.13
3109 3848 2.028484 TCTTGTCACCGTCACCGC 59.972 61.111 0.00 0.00 0.00 5.68
3110 3849 1.663702 GGTCTTGTCACCGTCACCG 60.664 63.158 0.00 0.00 0.00 4.94
3111 3850 0.179067 TTGGTCTTGTCACCGTCACC 60.179 55.000 0.00 0.00 39.62 4.02
3112 3851 1.217882 CTTGGTCTTGTCACCGTCAC 58.782 55.000 0.00 0.00 39.62 3.67
3113 3852 0.531974 GCTTGGTCTTGTCACCGTCA 60.532 55.000 0.00 0.00 39.62 4.35
3114 3853 0.249911 AGCTTGGTCTTGTCACCGTC 60.250 55.000 0.00 0.00 39.62 4.79
3115 3854 0.249911 GAGCTTGGTCTTGTCACCGT 60.250 55.000 0.00 0.00 39.62 4.83
3116 3855 0.951040 GGAGCTTGGTCTTGTCACCG 60.951 60.000 0.00 0.00 39.62 4.94
3117 3856 0.606673 GGGAGCTTGGTCTTGTCACC 60.607 60.000 0.00 0.00 36.90 4.02
3118 3857 0.951040 CGGGAGCTTGGTCTTGTCAC 60.951 60.000 0.00 0.00 0.00 3.67
3119 3858 1.118965 TCGGGAGCTTGGTCTTGTCA 61.119 55.000 0.00 0.00 0.00 3.58
3120 3859 0.250513 ATCGGGAGCTTGGTCTTGTC 59.749 55.000 0.00 0.00 0.00 3.18
3121 3860 0.036010 CATCGGGAGCTTGGTCTTGT 60.036 55.000 0.00 0.00 0.00 3.16
3122 3861 1.372087 GCATCGGGAGCTTGGTCTTG 61.372 60.000 0.00 0.00 0.00 3.02
3123 3862 1.078143 GCATCGGGAGCTTGGTCTT 60.078 57.895 0.00 0.00 0.00 3.01
3124 3863 2.249413 CTGCATCGGGAGCTTGGTCT 62.249 60.000 0.00 0.00 0.00 3.85
3125 3864 1.817099 CTGCATCGGGAGCTTGGTC 60.817 63.158 0.00 0.00 0.00 4.02
3126 3865 2.270205 CTGCATCGGGAGCTTGGT 59.730 61.111 0.00 0.00 0.00 3.67
3127 3866 2.335092 ATCCTGCATCGGGAGCTTGG 62.335 60.000 0.00 0.00 42.74 3.61
3128 3867 1.147824 ATCCTGCATCGGGAGCTTG 59.852 57.895 0.00 0.00 42.74 4.01
3129 3868 1.147824 CATCCTGCATCGGGAGCTT 59.852 57.895 0.00 0.00 42.74 3.74
3130 3869 2.068821 ACATCCTGCATCGGGAGCT 61.069 57.895 0.00 0.00 42.74 4.09
3131 3870 1.890979 CACATCCTGCATCGGGAGC 60.891 63.158 0.00 0.00 42.74 4.70
3132 3871 1.890979 GCACATCCTGCATCGGGAG 60.891 63.158 0.00 0.00 46.29 4.30
3133 3872 2.190313 GCACATCCTGCATCGGGA 59.810 61.111 0.00 0.00 46.29 5.14
3141 3880 2.104859 CACTCGCCAGCACATCCTG 61.105 63.158 0.00 0.00 0.00 3.86
3142 3881 2.267006 CACTCGCCAGCACATCCT 59.733 61.111 0.00 0.00 0.00 3.24
3143 3882 2.821366 CCACTCGCCAGCACATCC 60.821 66.667 0.00 0.00 0.00 3.51
3144 3883 3.503363 GCCACTCGCCAGCACATC 61.503 66.667 0.00 0.00 0.00 3.06
3283 4022 2.287308 CGAAAACCGCAATTTCCAGTGA 60.287 45.455 0.00 0.00 34.10 3.41
3284 4023 2.050691 CGAAAACCGCAATTTCCAGTG 58.949 47.619 0.00 0.00 34.10 3.66
3285 4024 1.679153 ACGAAAACCGCAATTTCCAGT 59.321 42.857 0.00 0.00 43.32 4.00
3286 4025 2.415697 ACGAAAACCGCAATTTCCAG 57.584 45.000 0.00 0.00 43.32 3.86
3287 4026 2.349627 CGTACGAAAACCGCAATTTCCA 60.350 45.455 10.44 0.00 43.32 3.53
3288 4027 2.235855 CGTACGAAAACCGCAATTTCC 58.764 47.619 10.44 0.00 43.32 3.13
3293 4032 1.845324 CGACGTACGAAAACCGCAA 59.155 52.632 24.41 0.00 45.77 4.85
3296 4035 2.719774 GGGCGACGTACGAAAACCG 61.720 63.158 24.41 16.37 45.77 4.44
3311 4059 2.282462 CTTCAGTGGTGGTGGGGC 60.282 66.667 0.00 0.00 0.00 5.80


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.