Multiple sequence alignment - TraesCS5A01G164900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G164900 chr5A 100.000 4523 0 0 827 5349 353598878 353603400 0.000000e+00 8353.0
1 TraesCS5A01G164900 chr5A 100.000 397 0 0 1 397 353598052 353598448 0.000000e+00 734.0
2 TraesCS5A01G164900 chr5A 82.353 187 28 3 2344 2529 626266913 626266731 1.990000e-34 158.0
3 TraesCS5A01G164900 chr5A 94.565 92 4 1 3650 3740 450750701 450750792 2.010000e-29 141.0
4 TraesCS5A01G164900 chr5A 100.000 28 0 0 1847 1874 680582836 680582809 1.000000e-02 52.8
5 TraesCS5A01G164900 chr5D 93.073 2411 84 27 827 3213 267083335 267080984 0.000000e+00 3450.0
6 TraesCS5A01G164900 chr5D 92.252 1652 48 19 3747 5349 267080407 267078787 0.000000e+00 2268.0
7 TraesCS5A01G164900 chr5D 97.375 381 9 1 3281 3660 267080960 267080580 0.000000e+00 647.0
8 TraesCS5A01G164900 chr5D 94.565 92 4 1 3650 3740 350331858 350331949 2.010000e-29 141.0
9 TraesCS5A01G164900 chr5B 93.453 2169 89 19 827 2961 301204565 301202416 0.000000e+00 3169.0
10 TraesCS5A01G164900 chr5B 93.265 1648 44 23 3283 4891 301202180 301200561 0.000000e+00 2366.0
11 TraesCS5A01G164900 chr5B 95.469 309 8 3 4919 5225 301200566 301200262 6.230000e-134 488.0
12 TraesCS5A01G164900 chr5B 98.113 212 4 0 2977 3188 301202432 301202221 2.350000e-98 370.0
13 TraesCS5A01G164900 chr5B 98.936 94 1 0 5256 5349 301200263 301200170 9.210000e-38 169.0
14 TraesCS5A01G164900 chr5B 96.667 90 2 1 3652 3740 62940412 62940323 1.200000e-31 148.0
15 TraesCS5A01G164900 chr6B 99.244 397 3 0 1 397 551035526 551035130 0.000000e+00 717.0
16 TraesCS5A01G164900 chr4A 99.244 397 3 0 1 397 10534445 10534049 0.000000e+00 717.0
17 TraesCS5A01G164900 chr3A 93.703 397 25 0 1 397 642168977 642169373 3.570000e-166 595.0
18 TraesCS5A01G164900 chr3A 85.792 183 25 1 2344 2525 519234598 519234780 5.470000e-45 193.0
19 TraesCS5A01G164900 chr3A 92.000 100 6 2 3650 3748 22230628 22230726 7.220000e-29 139.0
20 TraesCS5A01G164900 chr2B 86.647 337 38 5 53 385 638764465 638764132 3.040000e-97 366.0
21 TraesCS5A01G164900 chr2A 84.078 358 45 4 23 370 679270551 679270196 8.580000e-88 335.0
22 TraesCS5A01G164900 chr2A 91.346 104 5 4 3656 3756 539325663 539325561 7.220000e-29 139.0
23 TraesCS5A01G164900 chr3D 86.243 189 25 1 2338 2525 5509535 5509723 2.530000e-48 204.0
24 TraesCS5A01G164900 chr3D 86.885 183 20 4 2344 2525 300413865 300413686 9.080000e-48 202.0
25 TraesCS5A01G164900 chr3D 83.333 186 26 2 2341 2525 578478118 578478299 3.310000e-37 167.0
26 TraesCS5A01G164900 chr3D 91.753 97 6 2 3656 3751 596060197 596060102 3.360000e-27 134.0
27 TraesCS5A01G164900 chr2D 84.153 183 22 5 2344 2524 350747628 350747805 2.560000e-38 171.0
28 TraesCS5A01G164900 chr3B 83.333 186 26 2 2341 2525 3244806 3244987 3.310000e-37 167.0
29 TraesCS5A01G164900 chr3B 83.140 172 15 8 219 383 169694146 169693982 1.550000e-30 145.0
30 TraesCS5A01G164900 chr7B 94.565 92 4 1 3650 3740 639796290 639796199 2.010000e-29 141.0
31 TraesCS5A01G164900 chr1A 91.089 101 6 2 3647 3746 335022185 335022283 3.360000e-27 134.0
32 TraesCS5A01G164900 chr1D 100.000 29 0 0 1847 1875 464856839 464856867 3.000000e-03 54.7
33 TraesCS5A01G164900 chr4D 100.000 28 0 0 1800 1827 435644878 435644905 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G164900 chr5A 353598052 353603400 5348 False 4543.500000 8353 100.000000 1 5349 2 chr5A.!!$F2 5348
1 TraesCS5A01G164900 chr5D 267078787 267083335 4548 True 2121.666667 3450 94.233333 827 5349 3 chr5D.!!$R1 4522
2 TraesCS5A01G164900 chr5B 301200170 301204565 4395 True 1312.400000 3169 95.847200 827 5349 5 chr5B.!!$R2 4522

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
43 44 0.098728 GGTTGTTCATCGGCGATTGG 59.901 55.000 21.54 10.43 0.00 3.16 F
143 144 0.102844 AGCTCTGCTCAAGATCTCGC 59.897 55.000 0.00 0.00 30.62 5.03 F
317 318 0.174845 TTCTTCCGTATCCTGCGTGG 59.825 55.000 0.00 0.00 37.10 4.94 F
1315 1339 0.381089 CCGCTCCGTCCTGTTAGTAG 59.619 60.000 0.00 0.00 0.00 2.57 F
2220 2255 0.106149 CGAAGGTCGGATTTAGGGGG 59.894 60.000 0.00 0.00 36.00 5.40 F
2703 2748 2.120312 TGTTGGACCCTAACACACAGA 58.880 47.619 0.00 0.00 33.43 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1828 1862 0.037160 ATTCCCGCCGTGGTTTTAGT 59.963 50.000 0.00 0.00 35.15 2.24 R
1977 2011 1.577922 GCATATGATGTGCCGGCAG 59.422 57.895 33.73 17.10 36.61 4.85 R
1978 2012 3.748623 GCATATGATGTGCCGGCA 58.251 55.556 29.03 29.03 36.61 5.69 R
2635 2680 2.037902 TGTGTGTCCTCTTGCCGAATTA 59.962 45.455 0.00 0.00 0.00 1.40 R
4186 4362 1.522668 TCCTCAAGCATCCAACAACG 58.477 50.000 0.00 0.00 0.00 4.10 R
4363 4539 1.153086 CCCAGAGGCTGCCATGTAC 60.153 63.158 22.65 6.59 0.00 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.873133 CTACGACAGGGATGAAGGAC 57.127 55.000 0.00 0.00 0.00 3.85
20 21 2.379972 CTACGACAGGGATGAAGGACT 58.620 52.381 0.00 0.00 0.00 3.85
21 22 0.898320 ACGACAGGGATGAAGGACTG 59.102 55.000 0.00 0.00 37.01 3.51
22 23 0.176680 CGACAGGGATGAAGGACTGG 59.823 60.000 0.00 0.00 35.34 4.00
23 24 1.573108 GACAGGGATGAAGGACTGGA 58.427 55.000 0.00 0.00 35.34 3.86
24 25 1.484240 GACAGGGATGAAGGACTGGAG 59.516 57.143 0.00 0.00 35.34 3.86
25 26 0.835941 CAGGGATGAAGGACTGGAGG 59.164 60.000 0.00 0.00 0.00 4.30
26 27 0.419459 AGGGATGAAGGACTGGAGGT 59.581 55.000 0.00 0.00 0.00 3.85
27 28 1.203492 AGGGATGAAGGACTGGAGGTT 60.203 52.381 0.00 0.00 0.00 3.50
28 29 1.065126 GGGATGAAGGACTGGAGGTTG 60.065 57.143 0.00 0.00 0.00 3.77
29 30 1.630878 GGATGAAGGACTGGAGGTTGT 59.369 52.381 0.00 0.00 0.00 3.32
30 31 2.040412 GGATGAAGGACTGGAGGTTGTT 59.960 50.000 0.00 0.00 0.00 2.83
31 32 2.930826 TGAAGGACTGGAGGTTGTTC 57.069 50.000 0.00 0.00 0.00 3.18
32 33 2.123589 TGAAGGACTGGAGGTTGTTCA 58.876 47.619 0.00 0.00 31.70 3.18
33 34 2.711009 TGAAGGACTGGAGGTTGTTCAT 59.289 45.455 0.00 0.00 30.23 2.57
34 35 3.244561 TGAAGGACTGGAGGTTGTTCATC 60.245 47.826 0.00 0.00 30.23 2.92
35 36 1.276421 AGGACTGGAGGTTGTTCATCG 59.724 52.381 0.00 0.00 0.00 3.84
36 37 1.676014 GGACTGGAGGTTGTTCATCGG 60.676 57.143 0.00 0.00 0.00 4.18
37 38 0.321653 ACTGGAGGTTGTTCATCGGC 60.322 55.000 0.00 0.00 0.00 5.54
38 39 1.361668 CTGGAGGTTGTTCATCGGCG 61.362 60.000 0.00 0.00 0.00 6.46
39 40 1.079405 GGAGGTTGTTCATCGGCGA 60.079 57.895 13.87 13.87 0.00 5.54
40 41 0.462047 GGAGGTTGTTCATCGGCGAT 60.462 55.000 18.14 18.14 0.00 4.58
41 42 1.369625 GAGGTTGTTCATCGGCGATT 58.630 50.000 21.54 2.37 0.00 3.34
42 43 1.062587 GAGGTTGTTCATCGGCGATTG 59.937 52.381 21.54 15.46 0.00 2.67
43 44 0.098728 GGTTGTTCATCGGCGATTGG 59.901 55.000 21.54 10.43 0.00 3.16
44 45 0.802494 GTTGTTCATCGGCGATTGGT 59.198 50.000 21.54 0.00 0.00 3.67
45 46 1.083489 TTGTTCATCGGCGATTGGTC 58.917 50.000 21.54 11.34 0.00 4.02
46 47 0.249120 TGTTCATCGGCGATTGGTCT 59.751 50.000 21.54 0.00 0.00 3.85
47 48 1.338674 TGTTCATCGGCGATTGGTCTT 60.339 47.619 21.54 0.00 0.00 3.01
48 49 1.737793 GTTCATCGGCGATTGGTCTTT 59.262 47.619 21.54 0.00 0.00 2.52
49 50 1.368641 TCATCGGCGATTGGTCTTTG 58.631 50.000 21.54 8.17 0.00 2.77
50 51 1.066502 TCATCGGCGATTGGTCTTTGA 60.067 47.619 21.54 10.67 0.00 2.69
51 52 1.737236 CATCGGCGATTGGTCTTTGAA 59.263 47.619 21.54 0.00 0.00 2.69
52 53 1.153353 TCGGCGATTGGTCTTTGAAC 58.847 50.000 4.99 0.00 0.00 3.18
53 54 0.168128 CGGCGATTGGTCTTTGAACC 59.832 55.000 0.00 0.00 39.94 3.62
54 55 1.534729 GGCGATTGGTCTTTGAACCT 58.465 50.000 0.00 0.00 40.20 3.50
55 56 1.200020 GGCGATTGGTCTTTGAACCTG 59.800 52.381 0.00 0.00 40.20 4.00
56 57 1.401539 GCGATTGGTCTTTGAACCTGC 60.402 52.381 0.00 0.00 40.20 4.85
57 58 2.154462 CGATTGGTCTTTGAACCTGCT 58.846 47.619 0.00 0.00 40.20 4.24
58 59 2.554032 CGATTGGTCTTTGAACCTGCTT 59.446 45.455 0.00 0.00 40.20 3.91
59 60 3.365364 CGATTGGTCTTTGAACCTGCTTC 60.365 47.826 0.00 0.00 40.20 3.86
60 61 2.727123 TGGTCTTTGAACCTGCTTCA 57.273 45.000 0.00 0.00 40.20 3.02
61 62 2.575532 TGGTCTTTGAACCTGCTTCAG 58.424 47.619 0.00 0.00 40.12 3.02
62 63 1.268079 GGTCTTTGAACCTGCTTCAGC 59.732 52.381 0.00 0.00 40.12 4.26
63 64 1.069636 GTCTTTGAACCTGCTTCAGCG 60.070 52.381 0.00 0.00 45.83 5.18
64 65 1.202639 TCTTTGAACCTGCTTCAGCGA 60.203 47.619 0.00 0.00 45.83 4.93
65 66 1.603802 CTTTGAACCTGCTTCAGCGAA 59.396 47.619 0.00 0.00 45.83 4.70
66 67 1.229428 TTGAACCTGCTTCAGCGAAG 58.771 50.000 12.17 12.17 45.83 3.79
89 90 3.333189 CGATGCGGATCTGGTGCG 61.333 66.667 15.31 0.00 45.31 5.34
90 91 2.969238 GATGCGGATCTGGTGCGG 60.969 66.667 9.99 0.00 42.48 5.69
94 95 3.274586 CGGATCTGGTGCGGCATG 61.275 66.667 5.72 0.00 38.09 4.06
95 96 2.903855 GGATCTGGTGCGGCATGG 60.904 66.667 5.72 0.00 0.00 3.66
96 97 2.903855 GATCTGGTGCGGCATGGG 60.904 66.667 5.72 0.00 0.00 4.00
97 98 4.511246 ATCTGGTGCGGCATGGGG 62.511 66.667 5.72 0.00 0.00 4.96
126 127 3.752339 CCGCCTGGGCTTTTCAGC 61.752 66.667 10.04 0.00 46.52 4.26
127 128 2.674380 CGCCTGGGCTTTTCAGCT 60.674 61.111 10.04 0.00 46.44 4.24
132 133 4.412075 GGGCTTTTCAGCTCTGCT 57.588 55.556 0.00 0.00 44.19 4.24
133 134 2.178856 GGGCTTTTCAGCTCTGCTC 58.821 57.895 0.00 0.00 44.19 4.26
134 135 0.607489 GGGCTTTTCAGCTCTGCTCA 60.607 55.000 0.00 0.00 44.19 4.26
135 136 1.242076 GGCTTTTCAGCTCTGCTCAA 58.758 50.000 0.00 0.00 46.44 3.02
136 137 1.199558 GGCTTTTCAGCTCTGCTCAAG 59.800 52.381 0.00 0.00 46.44 3.02
137 138 2.149578 GCTTTTCAGCTCTGCTCAAGA 58.850 47.619 0.00 0.00 43.51 3.02
138 139 2.748532 GCTTTTCAGCTCTGCTCAAGAT 59.251 45.455 0.00 0.00 43.51 2.40
139 140 3.181508 GCTTTTCAGCTCTGCTCAAGATC 60.182 47.826 0.00 0.00 43.51 2.75
140 141 3.977134 TTTCAGCTCTGCTCAAGATCT 57.023 42.857 0.00 0.00 36.40 2.75
141 142 3.523606 TTCAGCTCTGCTCAAGATCTC 57.476 47.619 0.00 0.00 36.40 2.75
142 143 1.404748 TCAGCTCTGCTCAAGATCTCG 59.595 52.381 0.00 0.00 36.40 4.04
143 144 0.102844 AGCTCTGCTCAAGATCTCGC 59.897 55.000 0.00 0.00 30.62 5.03
144 145 0.875474 GCTCTGCTCAAGATCTCGCC 60.875 60.000 0.00 0.00 33.29 5.54
145 146 0.746063 CTCTGCTCAAGATCTCGCCT 59.254 55.000 0.00 0.00 33.29 5.52
146 147 0.743688 TCTGCTCAAGATCTCGCCTC 59.256 55.000 0.00 0.00 0.00 4.70
147 148 0.746063 CTGCTCAAGATCTCGCCTCT 59.254 55.000 0.00 0.00 0.00 3.69
148 149 0.743688 TGCTCAAGATCTCGCCTCTC 59.256 55.000 0.00 0.00 0.00 3.20
149 150 0.317770 GCTCAAGATCTCGCCTCTCG 60.318 60.000 0.00 0.00 40.15 4.04
150 151 0.317770 CTCAAGATCTCGCCTCTCGC 60.318 60.000 0.00 0.00 38.27 5.03
171 172 3.573491 GGGCTACGATTGTGCGGC 61.573 66.667 0.00 0.00 35.12 6.53
172 173 2.511600 GGCTACGATTGTGCGGCT 60.512 61.111 0.00 0.00 35.12 5.52
173 174 2.526120 GGCTACGATTGTGCGGCTC 61.526 63.158 0.00 0.00 35.12 4.70
174 175 1.809619 GCTACGATTGTGCGGCTCA 60.810 57.895 0.00 0.00 35.12 4.26
175 176 1.999051 CTACGATTGTGCGGCTCAC 59.001 57.895 3.94 0.00 45.82 3.51
203 204 2.185350 AGCGATGGTGCTTCTCCG 59.815 61.111 0.00 0.00 44.46 4.63
204 205 2.892425 GCGATGGTGCTTCTCCGG 60.892 66.667 0.00 0.00 0.00 5.14
205 206 2.892640 CGATGGTGCTTCTCCGGA 59.107 61.111 2.93 2.93 0.00 5.14
206 207 1.443407 CGATGGTGCTTCTCCGGAT 59.557 57.895 3.57 0.00 0.00 4.18
207 208 0.598680 CGATGGTGCTTCTCCGGATC 60.599 60.000 3.57 0.00 0.00 3.36
208 209 0.755686 GATGGTGCTTCTCCGGATCT 59.244 55.000 3.57 0.00 0.00 2.75
209 210 1.964223 GATGGTGCTTCTCCGGATCTA 59.036 52.381 3.57 0.00 0.00 1.98
210 211 1.860641 TGGTGCTTCTCCGGATCTAA 58.139 50.000 3.57 0.00 0.00 2.10
211 212 2.184533 TGGTGCTTCTCCGGATCTAAA 58.815 47.619 3.57 0.00 0.00 1.85
212 213 2.168521 TGGTGCTTCTCCGGATCTAAAG 59.831 50.000 3.57 8.09 0.00 1.85
213 214 2.483889 GGTGCTTCTCCGGATCTAAAGG 60.484 54.545 3.57 0.00 0.00 3.11
214 215 1.762957 TGCTTCTCCGGATCTAAAGGG 59.237 52.381 3.57 0.00 0.00 3.95
215 216 1.070914 GCTTCTCCGGATCTAAAGGGG 59.929 57.143 3.57 0.00 0.00 4.79
216 217 2.399580 CTTCTCCGGATCTAAAGGGGT 58.600 52.381 3.57 0.00 0.00 4.95
217 218 2.563039 TCTCCGGATCTAAAGGGGTT 57.437 50.000 3.57 0.00 0.00 4.11
218 219 2.116238 TCTCCGGATCTAAAGGGGTTG 58.884 52.381 3.57 0.00 0.00 3.77
219 220 1.141053 CTCCGGATCTAAAGGGGTTGG 59.859 57.143 3.57 0.00 0.00 3.77
220 221 0.916809 CCGGATCTAAAGGGGTTGGT 59.083 55.000 0.00 0.00 0.00 3.67
221 222 1.134189 CCGGATCTAAAGGGGTTGGTC 60.134 57.143 0.00 0.00 0.00 4.02
222 223 1.472728 CGGATCTAAAGGGGTTGGTCG 60.473 57.143 0.00 0.00 0.00 4.79
223 224 1.664873 GATCTAAAGGGGTTGGTCGC 58.335 55.000 0.00 0.00 0.00 5.19
224 225 1.209747 GATCTAAAGGGGTTGGTCGCT 59.790 52.381 0.00 0.00 0.00 4.93
225 226 1.061546 TCTAAAGGGGTTGGTCGCTT 58.938 50.000 0.00 0.00 40.86 4.68
226 227 1.422402 TCTAAAGGGGTTGGTCGCTTT 59.578 47.619 10.74 10.74 46.68 3.51
227 228 2.158579 TCTAAAGGGGTTGGTCGCTTTT 60.159 45.455 11.10 4.22 44.06 2.27
228 229 1.037493 AAAGGGGTTGGTCGCTTTTC 58.963 50.000 0.00 0.00 44.06 2.29
229 230 0.185175 AAGGGGTTGGTCGCTTTTCT 59.815 50.000 0.00 0.00 36.69 2.52
230 231 0.185175 AGGGGTTGGTCGCTTTTCTT 59.815 50.000 0.00 0.00 0.00 2.52
231 232 0.596577 GGGGTTGGTCGCTTTTCTTC 59.403 55.000 0.00 0.00 0.00 2.87
232 233 1.605753 GGGTTGGTCGCTTTTCTTCT 58.394 50.000 0.00 0.00 0.00 2.85
233 234 1.535896 GGGTTGGTCGCTTTTCTTCTC 59.464 52.381 0.00 0.00 0.00 2.87
234 235 2.495084 GGTTGGTCGCTTTTCTTCTCT 58.505 47.619 0.00 0.00 0.00 3.10
235 236 2.480802 GGTTGGTCGCTTTTCTTCTCTC 59.519 50.000 0.00 0.00 0.00 3.20
236 237 3.394719 GTTGGTCGCTTTTCTTCTCTCT 58.605 45.455 0.00 0.00 0.00 3.10
237 238 3.305398 TGGTCGCTTTTCTTCTCTCTC 57.695 47.619 0.00 0.00 0.00 3.20
238 239 2.028930 TGGTCGCTTTTCTTCTCTCTCC 60.029 50.000 0.00 0.00 0.00 3.71
239 240 2.255316 GTCGCTTTTCTTCTCTCTCCG 58.745 52.381 0.00 0.00 0.00 4.63
240 241 1.202582 TCGCTTTTCTTCTCTCTCCGG 59.797 52.381 0.00 0.00 0.00 5.14
241 242 1.364721 GCTTTTCTTCTCTCTCCGGC 58.635 55.000 0.00 0.00 0.00 6.13
242 243 1.634702 CTTTTCTTCTCTCTCCGGCG 58.365 55.000 0.00 0.00 0.00 6.46
243 244 0.246635 TTTTCTTCTCTCTCCGGCGG 59.753 55.000 22.51 22.51 0.00 6.13
244 245 2.227089 TTTCTTCTCTCTCCGGCGGC 62.227 60.000 23.83 0.00 0.00 6.53
245 246 4.560856 CTTCTCTCTCCGGCGGCG 62.561 72.222 26.12 26.12 0.00 6.46
261 262 4.907034 CGACGACGGCGAGATGGG 62.907 72.222 22.49 0.00 41.64 4.00
262 263 4.570663 GACGACGGCGAGATGGGG 62.571 72.222 22.49 0.00 41.64 4.96
265 266 2.836360 GACGGCGAGATGGGGGTA 60.836 66.667 16.62 0.00 0.00 3.69
266 267 2.838225 ACGGCGAGATGGGGGTAG 60.838 66.667 16.62 0.00 0.00 3.18
267 268 4.301027 CGGCGAGATGGGGGTAGC 62.301 72.222 0.00 0.00 0.00 3.58
268 269 3.161450 GGCGAGATGGGGGTAGCA 61.161 66.667 0.00 0.00 0.00 3.49
269 270 2.423446 GCGAGATGGGGGTAGCAG 59.577 66.667 0.00 0.00 0.00 4.24
270 271 2.423446 CGAGATGGGGGTAGCAGC 59.577 66.667 0.00 0.00 0.00 5.25
271 272 2.423446 GAGATGGGGGTAGCAGCG 59.577 66.667 0.00 0.00 0.00 5.18
272 273 3.164269 AGATGGGGGTAGCAGCGG 61.164 66.667 0.00 0.00 0.00 5.52
273 274 4.937431 GATGGGGGTAGCAGCGGC 62.937 72.222 0.00 0.00 41.61 6.53
283 284 4.332637 GCAGCGGCTGTGTGGTTG 62.333 66.667 28.88 4.57 36.96 3.77
284 285 2.591429 CAGCGGCTGTGTGGTTGA 60.591 61.111 21.60 0.00 0.00 3.18
285 286 2.281070 AGCGGCTGTGTGGTTGAG 60.281 61.111 0.00 0.00 0.00 3.02
286 287 2.591715 GCGGCTGTGTGGTTGAGT 60.592 61.111 0.00 0.00 0.00 3.41
287 288 2.186826 GCGGCTGTGTGGTTGAGTT 61.187 57.895 0.00 0.00 0.00 3.01
288 289 1.648720 CGGCTGTGTGGTTGAGTTG 59.351 57.895 0.00 0.00 0.00 3.16
289 290 1.785041 CGGCTGTGTGGTTGAGTTGG 61.785 60.000 0.00 0.00 0.00 3.77
290 291 0.465460 GGCTGTGTGGTTGAGTTGGA 60.465 55.000 0.00 0.00 0.00 3.53
291 292 1.609208 GCTGTGTGGTTGAGTTGGAT 58.391 50.000 0.00 0.00 0.00 3.41
292 293 1.956477 GCTGTGTGGTTGAGTTGGATT 59.044 47.619 0.00 0.00 0.00 3.01
293 294 2.362077 GCTGTGTGGTTGAGTTGGATTT 59.638 45.455 0.00 0.00 0.00 2.17
294 295 3.796504 GCTGTGTGGTTGAGTTGGATTTG 60.797 47.826 0.00 0.00 0.00 2.32
295 296 2.692557 TGTGTGGTTGAGTTGGATTTGG 59.307 45.455 0.00 0.00 0.00 3.28
296 297 2.693074 GTGTGGTTGAGTTGGATTTGGT 59.307 45.455 0.00 0.00 0.00 3.67
297 298 2.692557 TGTGGTTGAGTTGGATTTGGTG 59.307 45.455 0.00 0.00 0.00 4.17
298 299 2.693074 GTGGTTGAGTTGGATTTGGTGT 59.307 45.455 0.00 0.00 0.00 4.16
299 300 3.132111 GTGGTTGAGTTGGATTTGGTGTT 59.868 43.478 0.00 0.00 0.00 3.32
300 301 3.383185 TGGTTGAGTTGGATTTGGTGTTC 59.617 43.478 0.00 0.00 0.00 3.18
301 302 3.636764 GGTTGAGTTGGATTTGGTGTTCT 59.363 43.478 0.00 0.00 0.00 3.01
302 303 4.099419 GGTTGAGTTGGATTTGGTGTTCTT 59.901 41.667 0.00 0.00 0.00 2.52
303 304 5.281727 GTTGAGTTGGATTTGGTGTTCTTC 58.718 41.667 0.00 0.00 0.00 2.87
304 305 3.888930 TGAGTTGGATTTGGTGTTCTTCC 59.111 43.478 0.00 0.00 0.00 3.46
305 306 2.884639 AGTTGGATTTGGTGTTCTTCCG 59.115 45.455 0.00 0.00 0.00 4.30
306 307 2.621526 GTTGGATTTGGTGTTCTTCCGT 59.378 45.455 0.00 0.00 0.00 4.69
307 308 3.773418 TGGATTTGGTGTTCTTCCGTA 57.227 42.857 0.00 0.00 0.00 4.02
308 309 4.295141 TGGATTTGGTGTTCTTCCGTAT 57.705 40.909 0.00 0.00 0.00 3.06
309 310 4.258543 TGGATTTGGTGTTCTTCCGTATC 58.741 43.478 0.00 0.00 0.00 2.24
310 311 3.626217 GGATTTGGTGTTCTTCCGTATCC 59.374 47.826 0.00 0.00 33.61 2.59
311 312 4.514401 GATTTGGTGTTCTTCCGTATCCT 58.486 43.478 0.00 0.00 0.00 3.24
312 313 3.328382 TTGGTGTTCTTCCGTATCCTG 57.672 47.619 0.00 0.00 0.00 3.86
313 314 1.066430 TGGTGTTCTTCCGTATCCTGC 60.066 52.381 0.00 0.00 0.00 4.85
314 315 1.278238 GTGTTCTTCCGTATCCTGCG 58.722 55.000 0.00 0.00 0.00 5.18
315 316 0.892755 TGTTCTTCCGTATCCTGCGT 59.107 50.000 0.00 0.00 0.00 5.24
316 317 1.278238 GTTCTTCCGTATCCTGCGTG 58.722 55.000 0.00 0.00 0.00 5.34
317 318 0.174845 TTCTTCCGTATCCTGCGTGG 59.825 55.000 0.00 0.00 37.10 4.94
326 327 1.807226 TCCTGCGTGGATGTACTCG 59.193 57.895 0.00 0.00 40.56 4.18
327 328 0.963856 TCCTGCGTGGATGTACTCGT 60.964 55.000 0.00 0.00 40.56 4.18
328 329 0.736636 CCTGCGTGGATGTACTCGTA 59.263 55.000 0.00 0.00 38.35 3.43
329 330 1.337071 CCTGCGTGGATGTACTCGTAT 59.663 52.381 0.00 0.00 38.35 3.06
330 331 2.604855 CCTGCGTGGATGTACTCGTATC 60.605 54.545 0.00 0.00 38.35 2.24
331 332 2.290916 CTGCGTGGATGTACTCGTATCT 59.709 50.000 0.00 0.00 0.00 1.98
332 333 3.469739 TGCGTGGATGTACTCGTATCTA 58.530 45.455 0.00 0.00 0.00 1.98
333 334 3.249320 TGCGTGGATGTACTCGTATCTAC 59.751 47.826 0.00 0.00 33.16 2.59
334 335 3.497640 GCGTGGATGTACTCGTATCTACT 59.502 47.826 0.00 0.00 34.00 2.57
335 336 4.610905 GCGTGGATGTACTCGTATCTACTG 60.611 50.000 0.00 0.00 34.00 2.74
336 337 4.510711 CGTGGATGTACTCGTATCTACTGT 59.489 45.833 0.00 0.00 34.00 3.55
337 338 5.693555 CGTGGATGTACTCGTATCTACTGTA 59.306 44.000 0.00 0.00 34.00 2.74
338 339 6.368243 CGTGGATGTACTCGTATCTACTGTAT 59.632 42.308 0.00 0.00 34.00 2.29
339 340 7.519843 GTGGATGTACTCGTATCTACTGTATG 58.480 42.308 0.00 0.00 33.56 2.39
340 341 7.172875 GTGGATGTACTCGTATCTACTGTATGT 59.827 40.741 0.00 0.00 33.56 2.29
341 342 7.387122 TGGATGTACTCGTATCTACTGTATGTC 59.613 40.741 0.00 0.00 0.00 3.06
342 343 7.603404 GGATGTACTCGTATCTACTGTATGTCT 59.397 40.741 0.00 0.00 0.00 3.41
343 344 7.943413 TGTACTCGTATCTACTGTATGTCTC 57.057 40.000 0.00 0.00 0.00 3.36
344 345 6.927936 TGTACTCGTATCTACTGTATGTCTCC 59.072 42.308 0.00 0.00 0.00 3.71
345 346 6.177310 ACTCGTATCTACTGTATGTCTCCT 57.823 41.667 0.00 0.00 0.00 3.69
346 347 6.593807 ACTCGTATCTACTGTATGTCTCCTT 58.406 40.000 0.00 0.00 0.00 3.36
347 348 6.483974 ACTCGTATCTACTGTATGTCTCCTTG 59.516 42.308 0.00 0.00 0.00 3.61
348 349 6.354938 TCGTATCTACTGTATGTCTCCTTGT 58.645 40.000 0.00 0.00 0.00 3.16
349 350 7.503549 TCGTATCTACTGTATGTCTCCTTGTA 58.496 38.462 0.00 0.00 0.00 2.41
350 351 7.989170 TCGTATCTACTGTATGTCTCCTTGTAA 59.011 37.037 0.00 0.00 0.00 2.41
351 352 8.784994 CGTATCTACTGTATGTCTCCTTGTAAT 58.215 37.037 0.00 0.00 0.00 1.89
352 353 9.900710 GTATCTACTGTATGTCTCCTTGTAATG 57.099 37.037 0.00 0.00 0.00 1.90
353 354 7.956328 TCTACTGTATGTCTCCTTGTAATGT 57.044 36.000 0.00 0.00 0.00 2.71
354 355 8.362464 TCTACTGTATGTCTCCTTGTAATGTT 57.638 34.615 0.00 0.00 0.00 2.71
355 356 8.812972 TCTACTGTATGTCTCCTTGTAATGTTT 58.187 33.333 0.00 0.00 0.00 2.83
356 357 9.436957 CTACTGTATGTCTCCTTGTAATGTTTT 57.563 33.333 0.00 0.00 0.00 2.43
357 358 8.324163 ACTGTATGTCTCCTTGTAATGTTTTC 57.676 34.615 0.00 0.00 0.00 2.29
358 359 7.390718 ACTGTATGTCTCCTTGTAATGTTTTCC 59.609 37.037 0.00 0.00 0.00 3.13
359 360 7.458397 TGTATGTCTCCTTGTAATGTTTTCCT 58.542 34.615 0.00 0.00 0.00 3.36
360 361 7.942341 TGTATGTCTCCTTGTAATGTTTTCCTT 59.058 33.333 0.00 0.00 0.00 3.36
361 362 9.444600 GTATGTCTCCTTGTAATGTTTTCCTTA 57.555 33.333 0.00 0.00 0.00 2.69
362 363 8.934023 ATGTCTCCTTGTAATGTTTTCCTTAA 57.066 30.769 0.00 0.00 0.00 1.85
363 364 8.161699 TGTCTCCTTGTAATGTTTTCCTTAAC 57.838 34.615 0.00 0.00 0.00 2.01
364 365 7.776030 TGTCTCCTTGTAATGTTTTCCTTAACA 59.224 33.333 0.00 0.00 41.81 2.41
394 395 8.801882 ATAATCACGAGTATTTCCCTCAAAAA 57.198 30.769 0.00 0.00 0.00 1.94
867 869 3.759618 TCTTCCCGAAGTCTCTTCTTCTC 59.240 47.826 4.45 0.00 40.89 2.87
873 875 3.359654 GAAGTCTCTTCTTCTCGATCGC 58.640 50.000 11.09 0.00 40.19 4.58
924 926 1.669604 CGACGAGATCCTCTTCTCCA 58.330 55.000 0.00 0.00 39.19 3.86
945 947 1.219124 CACCTCCACTCCATCCACG 59.781 63.158 0.00 0.00 0.00 4.94
1041 1050 4.651008 GTGGTCACCCGCGACGAA 62.651 66.667 8.23 0.00 36.73 3.85
1046 1055 4.953868 CACCCGCGACGAACACCA 62.954 66.667 8.23 0.00 0.00 4.17
1091 1100 2.286962 TCCCGAGGAGGAGGAGGA 60.287 66.667 0.00 0.00 45.00 3.71
1092 1101 2.197324 CCCGAGGAGGAGGAGGAG 59.803 72.222 0.00 0.00 45.00 3.69
1093 1102 2.197324 CCGAGGAGGAGGAGGAGG 59.803 72.222 0.00 0.00 45.00 4.30
1094 1103 2.387772 CCGAGGAGGAGGAGGAGGA 61.388 68.421 0.00 0.00 45.00 3.71
1286 1310 1.469335 AACCTGCCGTTCCTCGAGAA 61.469 55.000 15.71 3.49 42.86 2.87
1315 1339 0.381089 CCGCTCCGTCCTGTTAGTAG 59.619 60.000 0.00 0.00 0.00 2.57
1316 1340 1.093159 CGCTCCGTCCTGTTAGTAGT 58.907 55.000 0.00 0.00 0.00 2.73
1317 1341 2.283298 CGCTCCGTCCTGTTAGTAGTA 58.717 52.381 0.00 0.00 0.00 1.82
1318 1342 2.287373 CGCTCCGTCCTGTTAGTAGTAG 59.713 54.545 0.00 0.00 0.00 2.57
1319 1343 3.277715 GCTCCGTCCTGTTAGTAGTAGT 58.722 50.000 0.00 0.00 0.00 2.73
1320 1344 4.446371 GCTCCGTCCTGTTAGTAGTAGTA 58.554 47.826 0.00 0.00 0.00 1.82
1321 1345 4.511082 GCTCCGTCCTGTTAGTAGTAGTAG 59.489 50.000 0.00 0.00 0.00 2.57
1322 1346 5.669477 CTCCGTCCTGTTAGTAGTAGTAGT 58.331 45.833 0.00 0.00 0.00 2.73
1323 1347 6.684111 GCTCCGTCCTGTTAGTAGTAGTAGTA 60.684 46.154 0.00 0.00 0.00 1.82
1330 1354 4.876107 TGTTAGTAGTAGTAGTACACGGCC 59.124 45.833 15.89 0.00 0.00 6.13
1372 1396 2.030562 GAGGTGGTGGTGACGTGG 59.969 66.667 0.00 0.00 0.00 4.94
1617 1644 8.726988 TCCGAAGAAATAAAAGTGAAATGGTAG 58.273 33.333 0.00 0.00 0.00 3.18
1660 1687 4.999950 GGATAACATGGGCTATCAACTCTG 59.000 45.833 0.00 0.00 0.00 3.35
1690 1717 0.533951 CTTCATCCAAGCTTTGCCCC 59.466 55.000 0.00 0.00 0.00 5.80
1736 1764 2.128771 TATGCCTTCTTGCTTGTCCC 57.871 50.000 0.00 0.00 0.00 4.46
1761 1789 9.471084 CCAAGAAATAAAATCAAAACGGTAAGT 57.529 29.630 0.00 0.00 0.00 2.24
1977 2011 3.887621 TCTCCATAGTACTTGTGTGCC 57.112 47.619 0.00 0.00 0.00 5.01
1978 2012 3.441101 TCTCCATAGTACTTGTGTGCCT 58.559 45.455 0.00 0.00 0.00 4.75
1979 2013 3.195610 TCTCCATAGTACTTGTGTGCCTG 59.804 47.826 0.00 0.00 0.00 4.85
1980 2014 2.009774 CCATAGTACTTGTGTGCCTGC 58.990 52.381 0.00 0.00 0.00 4.85
1981 2015 2.009774 CATAGTACTTGTGTGCCTGCC 58.990 52.381 0.00 0.00 0.00 4.85
2051 2085 4.718774 TCCAAGTTGAGCTTCTCCATAGAT 59.281 41.667 3.87 0.00 34.69 1.98
2143 2177 6.212388 AGACAGATGACTTGTATTTCTGACCT 59.788 38.462 5.33 0.25 37.75 3.85
2146 2180 7.046652 CAGATGACTTGTATTTCTGACCTGAT 58.953 38.462 0.00 0.00 36.72 2.90
2220 2255 0.106149 CGAAGGTCGGATTTAGGGGG 59.894 60.000 0.00 0.00 36.00 5.40
2293 2329 7.981142 ACTGTTCTTTTTACCCCTCTATTGTA 58.019 34.615 0.00 0.00 0.00 2.41
2373 2409 2.818130 TCGTTAACCGGTAGTTGCTT 57.182 45.000 8.00 0.00 39.67 3.91
2425 2461 2.981859 ATCGGCAAGTTAATCGGTCT 57.018 45.000 0.00 0.00 0.00 3.85
2436 2480 6.342338 AGTTAATCGGTCTATTAATCGGCT 57.658 37.500 0.00 0.00 34.67 5.52
2444 2488 7.033791 TCGGTCTATTAATCGGCTGATTTATC 58.966 38.462 25.24 10.26 42.14 1.75
2506 2550 8.749026 TTAATCGGCCATTTAACTGGTTAATA 57.251 30.769 12.94 0.00 38.63 0.98
2546 2591 6.322201 CAGGACCTTGGAGCAATAACATTATT 59.678 38.462 0.00 0.00 33.82 1.40
2635 2680 5.598005 TGTTGGAATTCAGATTTGAGTGGTT 59.402 36.000 7.93 0.00 34.15 3.67
2702 2747 2.631160 TGTTGGACCCTAACACACAG 57.369 50.000 0.00 0.00 33.43 3.66
2703 2748 2.120312 TGTTGGACCCTAACACACAGA 58.880 47.619 0.00 0.00 33.43 3.41
2704 2749 2.708861 TGTTGGACCCTAACACACAGAT 59.291 45.455 0.00 0.00 33.43 2.90
2705 2750 3.074412 GTTGGACCCTAACACACAGATG 58.926 50.000 0.00 0.00 0.00 2.90
2706 2751 2.615391 TGGACCCTAACACACAGATGA 58.385 47.619 0.00 0.00 0.00 2.92
2832 2888 5.543714 TCTGAAACCTTCGCTGTTATGTTA 58.456 37.500 0.00 0.00 0.00 2.41
2987 3043 9.995003 TGTCTTTTTGCATGGAGTATTTTTATT 57.005 25.926 0.00 0.00 0.00 1.40
3188 3244 8.576442 CCACCAGTAGAAAATCAATAAACACTT 58.424 33.333 0.00 0.00 0.00 3.16
3189 3245 9.398170 CACCAGTAGAAAATCAATAAACACTTG 57.602 33.333 0.00 0.00 0.00 3.16
3213 3271 8.702163 TGTATACAAGCATATGGTTCATATCG 57.298 34.615 17.04 7.86 35.18 2.92
3214 3272 8.527810 TGTATACAAGCATATGGTTCATATCGA 58.472 33.333 17.04 6.30 35.18 3.59
3215 3273 9.025020 GTATACAAGCATATGGTTCATATCGAG 57.975 37.037 17.04 6.50 35.18 4.04
3217 3275 6.524734 ACAAGCATATGGTTCATATCGAGAA 58.475 36.000 17.04 0.00 35.18 2.87
3218 3276 6.992123 ACAAGCATATGGTTCATATCGAGAAA 59.008 34.615 17.04 0.00 35.18 2.52
3219 3277 7.041780 ACAAGCATATGGTTCATATCGAGAAAC 60.042 37.037 17.04 0.00 35.18 2.78
3250 3308 9.970553 AATATGAGATATGAACCATATGCTTGT 57.029 29.630 4.37 0.00 37.20 3.16
3259 3317 7.967890 TGAACCATATGCTTGTATATGAGTG 57.032 36.000 16.53 6.25 41.44 3.51
3260 3318 7.508687 TGAACCATATGCTTGTATATGAGTGT 58.491 34.615 16.53 6.73 41.44 3.55
3261 3319 7.657354 TGAACCATATGCTTGTATATGAGTGTC 59.343 37.037 16.53 12.71 41.44 3.67
3262 3320 7.308450 ACCATATGCTTGTATATGAGTGTCT 57.692 36.000 16.53 0.00 41.44 3.41
3263 3321 7.739825 ACCATATGCTTGTATATGAGTGTCTT 58.260 34.615 16.53 0.00 41.44 3.01
3264 3322 8.213679 ACCATATGCTTGTATATGAGTGTCTTT 58.786 33.333 16.53 0.00 41.44 2.52
3265 3323 9.060347 CCATATGCTTGTATATGAGTGTCTTTT 57.940 33.333 16.53 0.00 41.44 2.27
3277 3335 7.678947 ATGAGTGTCTTTTTATTCAGTGGAG 57.321 36.000 0.00 0.00 0.00 3.86
3278 3336 5.470098 TGAGTGTCTTTTTATTCAGTGGAGC 59.530 40.000 0.00 0.00 0.00 4.70
3279 3337 5.625150 AGTGTCTTTTTATTCAGTGGAGCT 58.375 37.500 0.00 0.00 0.00 4.09
3401 3459 3.275617 AGTATTAGCGTTGCAATCCCA 57.724 42.857 0.59 0.00 0.00 4.37
3449 3508 3.551485 GTGAACATGTGGCACAGAAAAAC 59.449 43.478 26.04 16.36 41.80 2.43
3520 3579 3.483196 CGATGCACCTTGAAAATATTGCG 59.517 43.478 0.00 0.00 30.02 4.85
3555 3614 5.404466 AGAGAAAGTTCAGATCAGACTGG 57.596 43.478 1.81 0.00 38.31 4.00
3759 3912 5.360591 AGTAACTTGCTAGATGGCATGTAC 58.639 41.667 3.81 1.08 45.46 2.90
3760 3913 4.494091 AACTTGCTAGATGGCATGTACT 57.506 40.909 3.81 0.00 45.46 2.73
3761 3914 3.801698 ACTTGCTAGATGGCATGTACTG 58.198 45.455 3.81 0.00 44.75 2.74
3762 3915 3.198635 ACTTGCTAGATGGCATGTACTGT 59.801 43.478 3.81 0.00 44.75 3.55
3763 3916 4.405680 ACTTGCTAGATGGCATGTACTGTA 59.594 41.667 3.81 0.00 44.75 2.74
3880 4036 6.822676 ACAAAGTGGCATTTTTCATTTTCAGA 59.177 30.769 5.12 0.00 0.00 3.27
3961 4117 3.418675 CGCGAGGCTCTGAAAGTTA 57.581 52.632 13.50 0.00 33.76 2.24
3973 4129 6.981559 GGCTCTGAAAGTTATTCTAGGTACTG 59.018 42.308 0.00 0.00 35.50 2.74
3991 4147 6.049790 GGTACTGGAATGTTCTACAGAATCC 58.950 44.000 0.00 3.97 36.33 3.01
4211 4387 2.887152 GTTGGATGCTTGAGGAAACTGT 59.113 45.455 0.00 0.00 44.43 3.55
4330 4506 5.122396 CGTCTCAAGCTTAAAGCATTTACCT 59.878 40.000 0.00 0.00 45.56 3.08
4372 4548 3.912496 AGAAGCATACAGTACATGGCA 57.088 42.857 0.00 0.00 0.00 4.92
4404 4580 3.155093 CCCAGATTGGCATTTCTTTCG 57.845 47.619 0.00 0.00 35.79 3.46
4733 4941 0.740149 TTGGCACTTCTGCTGTTGTG 59.260 50.000 11.79 11.79 43.66 3.33
4752 4960 6.183360 TGTTGTGGCAAAGCTTTTGTAGATAA 60.183 34.615 9.53 0.00 0.00 1.75
4760 4968 7.641802 GCAAAGCTTTTGTAGATAATACTGCTC 59.358 37.037 9.53 0.00 0.00 4.26
4770 4978 7.986889 TGTAGATAATACTGCTCAAAAGATGCA 59.013 33.333 0.00 0.00 35.30 3.96
4801 5009 2.126467 GCAACTTCTTGCGAAAATGCA 58.874 42.857 0.00 0.00 43.42 3.96
4806 5014 2.634982 TCTTGCGAAAATGCATGTCC 57.365 45.000 0.00 0.00 45.78 4.02
4808 5016 2.295629 TCTTGCGAAAATGCATGTCCAA 59.704 40.909 0.00 7.07 45.78 3.53
4886 5096 6.987403 AGGGTATGCTCCTTGTTTTAAAAA 57.013 33.333 1.31 0.00 0.00 1.94
4916 5126 7.284944 AGAGCTTTTGATGAATCCAATTCCTAG 59.715 37.037 0.00 0.00 38.50 3.02
4942 5152 0.526662 AACTAAGGGACGAGCTCACG 59.473 55.000 15.40 3.56 39.31 4.35
5156 5369 3.059352 TGATCACGAGACTCTCACAGA 57.941 47.619 6.86 1.43 0.00 3.41
5218 5431 1.542472 CATCACAAGCAACATCAGGCA 59.458 47.619 0.00 0.00 0.00 4.75
5242 5455 9.724665 GCAATCAAAACAAAAACAAAAATCAAC 57.275 25.926 0.00 0.00 0.00 3.18
5251 5464 8.878769 ACAAAAACAAAAATCAACATCAGTACC 58.121 29.630 0.00 0.00 0.00 3.34
5252 5465 8.877779 CAAAAACAAAAATCAACATCAGTACCA 58.122 29.630 0.00 0.00 0.00 3.25
5253 5466 9.442047 AAAAACAAAAATCAACATCAGTACCAA 57.558 25.926 0.00 0.00 0.00 3.67
5254 5467 8.647143 AAACAAAAATCAACATCAGTACCAAG 57.353 30.769 0.00 0.00 0.00 3.61
5255 5468 7.581213 ACAAAAATCAACATCAGTACCAAGA 57.419 32.000 0.00 0.00 0.00 3.02
5256 5469 8.006298 ACAAAAATCAACATCAGTACCAAGAA 57.994 30.769 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.099921 CAGTCCTTCATCCCTGTCGTAG 59.900 54.545 0.00 0.00 0.00 3.51
1 2 2.100197 CAGTCCTTCATCCCTGTCGTA 58.900 52.381 0.00 0.00 0.00 3.43
2 3 0.898320 CAGTCCTTCATCCCTGTCGT 59.102 55.000 0.00 0.00 0.00 4.34
3 4 0.176680 CCAGTCCTTCATCCCTGTCG 59.823 60.000 0.00 0.00 0.00 4.35
4 5 1.484240 CTCCAGTCCTTCATCCCTGTC 59.516 57.143 0.00 0.00 0.00 3.51
5 6 1.577736 CTCCAGTCCTTCATCCCTGT 58.422 55.000 0.00 0.00 0.00 4.00
6 7 0.835941 CCTCCAGTCCTTCATCCCTG 59.164 60.000 0.00 0.00 0.00 4.45
7 8 0.419459 ACCTCCAGTCCTTCATCCCT 59.581 55.000 0.00 0.00 0.00 4.20
8 9 1.065126 CAACCTCCAGTCCTTCATCCC 60.065 57.143 0.00 0.00 0.00 3.85
9 10 1.630878 ACAACCTCCAGTCCTTCATCC 59.369 52.381 0.00 0.00 0.00 3.51
10 11 3.244561 TGAACAACCTCCAGTCCTTCATC 60.245 47.826 0.00 0.00 0.00 2.92
11 12 2.711009 TGAACAACCTCCAGTCCTTCAT 59.289 45.455 0.00 0.00 0.00 2.57
12 13 2.123589 TGAACAACCTCCAGTCCTTCA 58.876 47.619 0.00 0.00 0.00 3.02
13 14 2.930826 TGAACAACCTCCAGTCCTTC 57.069 50.000 0.00 0.00 0.00 3.46
14 15 2.289694 CGATGAACAACCTCCAGTCCTT 60.290 50.000 0.00 0.00 0.00 3.36
15 16 1.276421 CGATGAACAACCTCCAGTCCT 59.724 52.381 0.00 0.00 0.00 3.85
16 17 1.676014 CCGATGAACAACCTCCAGTCC 60.676 57.143 0.00 0.00 0.00 3.85
17 18 1.726853 CCGATGAACAACCTCCAGTC 58.273 55.000 0.00 0.00 0.00 3.51
18 19 0.321653 GCCGATGAACAACCTCCAGT 60.322 55.000 0.00 0.00 0.00 4.00
19 20 1.361668 CGCCGATGAACAACCTCCAG 61.362 60.000 0.00 0.00 0.00 3.86
20 21 1.375396 CGCCGATGAACAACCTCCA 60.375 57.895 0.00 0.00 0.00 3.86
21 22 0.462047 ATCGCCGATGAACAACCTCC 60.462 55.000 0.00 0.00 0.00 4.30
22 23 1.062587 CAATCGCCGATGAACAACCTC 59.937 52.381 0.00 0.00 0.00 3.85
23 24 1.086696 CAATCGCCGATGAACAACCT 58.913 50.000 0.00 0.00 0.00 3.50
24 25 0.098728 CCAATCGCCGATGAACAACC 59.901 55.000 0.00 0.00 0.00 3.77
25 26 0.802494 ACCAATCGCCGATGAACAAC 59.198 50.000 0.00 0.00 0.00 3.32
26 27 1.083489 GACCAATCGCCGATGAACAA 58.917 50.000 0.00 0.00 0.00 2.83
27 28 0.249120 AGACCAATCGCCGATGAACA 59.751 50.000 0.00 0.00 0.00 3.18
28 29 1.369625 AAGACCAATCGCCGATGAAC 58.630 50.000 0.00 0.00 0.00 3.18
29 30 1.737236 CAAAGACCAATCGCCGATGAA 59.263 47.619 0.00 0.00 0.00 2.57
30 31 1.066502 TCAAAGACCAATCGCCGATGA 60.067 47.619 0.00 0.00 0.00 2.92
31 32 1.368641 TCAAAGACCAATCGCCGATG 58.631 50.000 0.00 0.00 0.00 3.84
32 33 1.737793 GTTCAAAGACCAATCGCCGAT 59.262 47.619 0.00 0.00 0.00 4.18
33 34 1.153353 GTTCAAAGACCAATCGCCGA 58.847 50.000 0.00 0.00 0.00 5.54
34 35 0.168128 GGTTCAAAGACCAATCGCCG 59.832 55.000 0.00 0.00 39.57 6.46
35 36 1.200020 CAGGTTCAAAGACCAATCGCC 59.800 52.381 0.00 0.00 42.35 5.54
36 37 1.401539 GCAGGTTCAAAGACCAATCGC 60.402 52.381 0.00 0.00 42.35 4.58
37 38 2.154462 AGCAGGTTCAAAGACCAATCG 58.846 47.619 0.00 0.00 42.35 3.34
38 39 3.569701 TGAAGCAGGTTCAAAGACCAATC 59.430 43.478 12.75 0.00 42.49 2.67
39 40 3.565307 TGAAGCAGGTTCAAAGACCAAT 58.435 40.909 12.75 0.00 42.49 3.16
40 41 2.951642 CTGAAGCAGGTTCAAAGACCAA 59.048 45.455 15.75 0.00 44.83 3.67
41 42 2.575532 CTGAAGCAGGTTCAAAGACCA 58.424 47.619 15.75 0.00 44.83 4.02
42 43 1.268079 GCTGAAGCAGGTTCAAAGACC 59.732 52.381 15.75 0.00 44.83 3.85
43 44 1.069636 CGCTGAAGCAGGTTCAAAGAC 60.070 52.381 15.75 5.60 44.83 3.01
44 45 1.202639 TCGCTGAAGCAGGTTCAAAGA 60.203 47.619 15.75 14.03 44.83 2.52
45 46 1.229428 TCGCTGAAGCAGGTTCAAAG 58.771 50.000 15.75 12.15 44.83 2.77
46 47 1.603802 CTTCGCTGAAGCAGGTTCAAA 59.396 47.619 15.75 7.07 44.83 2.69
47 48 1.229428 CTTCGCTGAAGCAGGTTCAA 58.771 50.000 15.75 0.00 44.83 2.69
48 49 2.918571 CTTCGCTGAAGCAGGTTCA 58.081 52.632 14.31 14.31 43.26 3.18
72 73 3.333189 CGCACCAGATCCGCATCG 61.333 66.667 0.00 0.00 33.75 3.84
73 74 2.969238 CCGCACCAGATCCGCATC 60.969 66.667 0.00 0.00 0.00 3.91
77 78 3.274586 CATGCCGCACCAGATCCG 61.275 66.667 0.00 0.00 0.00 4.18
78 79 2.903855 CCATGCCGCACCAGATCC 60.904 66.667 0.00 0.00 0.00 3.36
79 80 2.903855 CCCATGCCGCACCAGATC 60.904 66.667 0.00 0.00 0.00 2.75
80 81 4.511246 CCCCATGCCGCACCAGAT 62.511 66.667 0.00 0.00 0.00 2.90
111 112 1.303970 AGAGCTGAAAAGCCCAGGC 60.304 57.895 0.00 0.00 42.33 4.85
112 113 1.593296 GCAGAGCTGAAAAGCCCAGG 61.593 60.000 0.85 0.00 34.90 4.45
113 114 0.608582 AGCAGAGCTGAAAAGCCCAG 60.609 55.000 0.85 0.00 37.57 4.45
114 115 0.607489 GAGCAGAGCTGAAAAGCCCA 60.607 55.000 0.85 0.00 39.88 5.36
115 116 0.607489 TGAGCAGAGCTGAAAAGCCC 60.607 55.000 0.85 0.00 39.88 5.19
116 117 1.199558 CTTGAGCAGAGCTGAAAAGCC 59.800 52.381 0.85 0.00 39.88 4.35
117 118 2.149578 TCTTGAGCAGAGCTGAAAAGC 58.850 47.619 0.85 0.00 39.88 3.51
118 119 4.603231 GATCTTGAGCAGAGCTGAAAAG 57.397 45.455 0.85 1.98 39.88 2.27
125 126 0.875474 GGCGAGATCTTGAGCAGAGC 60.875 60.000 14.59 2.17 38.31 4.09
126 127 0.746063 AGGCGAGATCTTGAGCAGAG 59.254 55.000 14.59 0.00 33.87 3.35
127 128 0.743688 GAGGCGAGATCTTGAGCAGA 59.256 55.000 14.59 0.00 35.33 4.26
128 129 0.746063 AGAGGCGAGATCTTGAGCAG 59.254 55.000 14.59 0.00 0.00 4.24
129 130 0.743688 GAGAGGCGAGATCTTGAGCA 59.256 55.000 14.59 0.00 0.00 4.26
130 131 0.317770 CGAGAGGCGAGATCTTGAGC 60.318 60.000 14.59 11.62 44.57 4.26
131 132 0.317770 GCGAGAGGCGAGATCTTGAG 60.318 60.000 14.59 1.89 44.57 3.02
132 133 1.730487 GCGAGAGGCGAGATCTTGA 59.270 57.895 14.59 0.00 44.57 3.02
133 134 4.317529 GCGAGAGGCGAGATCTTG 57.682 61.111 5.50 5.50 44.57 3.02
150 151 3.261951 CACAATCGTAGCCCGCCG 61.262 66.667 0.00 0.00 36.19 6.46
151 152 3.573491 GCACAATCGTAGCCCGCC 61.573 66.667 0.00 0.00 36.19 6.13
152 153 3.925238 CGCACAATCGTAGCCCGC 61.925 66.667 0.00 0.00 36.19 6.13
153 154 3.261951 CCGCACAATCGTAGCCCG 61.262 66.667 0.00 0.00 38.13 6.13
154 155 3.573491 GCCGCACAATCGTAGCCC 61.573 66.667 0.00 0.00 0.00 5.19
155 156 2.511600 AGCCGCACAATCGTAGCC 60.512 61.111 0.00 0.00 0.00 3.93
156 157 1.809619 TGAGCCGCACAATCGTAGC 60.810 57.895 0.00 0.00 0.00 3.58
157 158 1.999051 GTGAGCCGCACAATCGTAG 59.001 57.895 0.00 0.00 46.91 3.51
158 159 4.178861 GTGAGCCGCACAATCGTA 57.821 55.556 0.00 0.00 46.91 3.43
186 187 2.185350 CGGAGAAGCACCATCGCT 59.815 61.111 0.00 0.00 46.67 4.93
187 188 2.650813 ATCCGGAGAAGCACCATCGC 62.651 60.000 11.34 0.00 0.00 4.58
188 189 0.598680 GATCCGGAGAAGCACCATCG 60.599 60.000 11.34 0.00 0.00 3.84
189 190 0.755686 AGATCCGGAGAAGCACCATC 59.244 55.000 11.34 0.00 0.00 3.51
190 191 2.088104 TAGATCCGGAGAAGCACCAT 57.912 50.000 11.34 0.00 0.00 3.55
191 192 1.860641 TTAGATCCGGAGAAGCACCA 58.139 50.000 11.34 0.00 0.00 4.17
192 193 2.483889 CCTTTAGATCCGGAGAAGCACC 60.484 54.545 11.34 0.00 0.00 5.01
193 194 2.483889 CCCTTTAGATCCGGAGAAGCAC 60.484 54.545 11.34 0.00 0.00 4.40
194 195 1.762957 CCCTTTAGATCCGGAGAAGCA 59.237 52.381 11.34 0.00 0.00 3.91
195 196 1.070914 CCCCTTTAGATCCGGAGAAGC 59.929 57.143 11.34 0.00 0.00 3.86
196 197 2.399580 ACCCCTTTAGATCCGGAGAAG 58.600 52.381 11.34 11.05 0.00 2.85
197 198 2.504175 CAACCCCTTTAGATCCGGAGAA 59.496 50.000 11.34 0.58 0.00 2.87
198 199 2.116238 CAACCCCTTTAGATCCGGAGA 58.884 52.381 11.34 0.00 0.00 3.71
199 200 1.141053 CCAACCCCTTTAGATCCGGAG 59.859 57.143 11.34 0.00 0.00 4.63
200 201 1.209621 CCAACCCCTTTAGATCCGGA 58.790 55.000 6.61 6.61 0.00 5.14
201 202 0.916809 ACCAACCCCTTTAGATCCGG 59.083 55.000 0.00 0.00 0.00 5.14
202 203 1.472728 CGACCAACCCCTTTAGATCCG 60.473 57.143 0.00 0.00 0.00 4.18
203 204 1.746171 GCGACCAACCCCTTTAGATCC 60.746 57.143 0.00 0.00 0.00 3.36
204 205 1.209747 AGCGACCAACCCCTTTAGATC 59.790 52.381 0.00 0.00 0.00 2.75
205 206 1.286248 AGCGACCAACCCCTTTAGAT 58.714 50.000 0.00 0.00 0.00 1.98
206 207 1.061546 AAGCGACCAACCCCTTTAGA 58.938 50.000 0.00 0.00 0.00 2.10
207 208 1.905637 AAAGCGACCAACCCCTTTAG 58.094 50.000 0.00 0.00 0.00 1.85
208 209 2.158579 AGAAAAGCGACCAACCCCTTTA 60.159 45.455 0.00 0.00 0.00 1.85
209 210 1.037493 GAAAAGCGACCAACCCCTTT 58.963 50.000 0.00 0.00 0.00 3.11
210 211 0.185175 AGAAAAGCGACCAACCCCTT 59.815 50.000 0.00 0.00 0.00 3.95
211 212 0.185175 AAGAAAAGCGACCAACCCCT 59.815 50.000 0.00 0.00 0.00 4.79
212 213 0.596577 GAAGAAAAGCGACCAACCCC 59.403 55.000 0.00 0.00 0.00 4.95
213 214 1.535896 GAGAAGAAAAGCGACCAACCC 59.464 52.381 0.00 0.00 0.00 4.11
214 215 2.480802 GAGAGAAGAAAAGCGACCAACC 59.519 50.000 0.00 0.00 0.00 3.77
215 216 3.394719 AGAGAGAAGAAAAGCGACCAAC 58.605 45.455 0.00 0.00 0.00 3.77
216 217 3.555168 GGAGAGAGAAGAAAAGCGACCAA 60.555 47.826 0.00 0.00 0.00 3.67
217 218 2.028930 GGAGAGAGAAGAAAAGCGACCA 60.029 50.000 0.00 0.00 0.00 4.02
218 219 2.612604 GGAGAGAGAAGAAAAGCGACC 58.387 52.381 0.00 0.00 0.00 4.79
219 220 2.255316 CGGAGAGAGAAGAAAAGCGAC 58.745 52.381 0.00 0.00 0.00 5.19
220 221 1.202582 CCGGAGAGAGAAGAAAAGCGA 59.797 52.381 0.00 0.00 0.00 4.93
221 222 1.634702 CCGGAGAGAGAAGAAAAGCG 58.365 55.000 0.00 0.00 0.00 4.68
222 223 1.364721 GCCGGAGAGAGAAGAAAAGC 58.635 55.000 5.05 0.00 0.00 3.51
223 224 1.634702 CGCCGGAGAGAGAAGAAAAG 58.365 55.000 5.05 0.00 0.00 2.27
224 225 0.246635 CCGCCGGAGAGAGAAGAAAA 59.753 55.000 5.05 0.00 0.00 2.29
225 226 1.890894 CCGCCGGAGAGAGAAGAAA 59.109 57.895 5.05 0.00 0.00 2.52
226 227 2.711922 GCCGCCGGAGAGAGAAGAA 61.712 63.158 7.68 0.00 0.00 2.52
227 228 3.141488 GCCGCCGGAGAGAGAAGA 61.141 66.667 7.68 0.00 0.00 2.87
228 229 4.560856 CGCCGCCGGAGAGAGAAG 62.561 72.222 7.68 0.00 0.00 2.85
244 245 4.907034 CCCATCTCGCCGTCGTCG 62.907 72.222 0.00 0.00 36.96 5.12
245 246 4.570663 CCCCATCTCGCCGTCGTC 62.571 72.222 0.00 0.00 36.96 4.20
248 249 2.836360 TACCCCCATCTCGCCGTC 60.836 66.667 0.00 0.00 0.00 4.79
249 250 2.838225 CTACCCCCATCTCGCCGT 60.838 66.667 0.00 0.00 0.00 5.68
250 251 4.301027 GCTACCCCCATCTCGCCG 62.301 72.222 0.00 0.00 0.00 6.46
251 252 3.161450 TGCTACCCCCATCTCGCC 61.161 66.667 0.00 0.00 0.00 5.54
252 253 2.423446 CTGCTACCCCCATCTCGC 59.577 66.667 0.00 0.00 0.00 5.03
253 254 2.423446 GCTGCTACCCCCATCTCG 59.577 66.667 0.00 0.00 0.00 4.04
254 255 2.423446 CGCTGCTACCCCCATCTC 59.577 66.667 0.00 0.00 0.00 2.75
255 256 3.164269 CCGCTGCTACCCCCATCT 61.164 66.667 0.00 0.00 0.00 2.90
256 257 4.937431 GCCGCTGCTACCCCCATC 62.937 72.222 0.00 0.00 33.53 3.51
266 267 4.332637 CAACCACACAGCCGCTGC 62.333 66.667 20.56 0.00 34.37 5.25
267 268 2.591429 TCAACCACACAGCCGCTG 60.591 61.111 19.08 19.08 37.52 5.18
268 269 2.281070 CTCAACCACACAGCCGCT 60.281 61.111 0.00 0.00 0.00 5.52
269 270 2.186826 AACTCAACCACACAGCCGC 61.187 57.895 0.00 0.00 0.00 6.53
270 271 1.648720 CAACTCAACCACACAGCCG 59.351 57.895 0.00 0.00 0.00 5.52
271 272 0.465460 TCCAACTCAACCACACAGCC 60.465 55.000 0.00 0.00 0.00 4.85
272 273 1.609208 ATCCAACTCAACCACACAGC 58.391 50.000 0.00 0.00 0.00 4.40
273 274 3.243501 CCAAATCCAACTCAACCACACAG 60.244 47.826 0.00 0.00 0.00 3.66
274 275 2.692557 CCAAATCCAACTCAACCACACA 59.307 45.455 0.00 0.00 0.00 3.72
275 276 2.693074 ACCAAATCCAACTCAACCACAC 59.307 45.455 0.00 0.00 0.00 3.82
276 277 2.692557 CACCAAATCCAACTCAACCACA 59.307 45.455 0.00 0.00 0.00 4.17
277 278 2.693074 ACACCAAATCCAACTCAACCAC 59.307 45.455 0.00 0.00 0.00 4.16
278 279 3.025322 ACACCAAATCCAACTCAACCA 57.975 42.857 0.00 0.00 0.00 3.67
279 280 3.636764 AGAACACCAAATCCAACTCAACC 59.363 43.478 0.00 0.00 0.00 3.77
280 281 4.918810 AGAACACCAAATCCAACTCAAC 57.081 40.909 0.00 0.00 0.00 3.18
281 282 4.340950 GGAAGAACACCAAATCCAACTCAA 59.659 41.667 0.00 0.00 0.00 3.02
282 283 3.888930 GGAAGAACACCAAATCCAACTCA 59.111 43.478 0.00 0.00 0.00 3.41
283 284 3.058224 CGGAAGAACACCAAATCCAACTC 60.058 47.826 0.00 0.00 0.00 3.01
284 285 2.884639 CGGAAGAACACCAAATCCAACT 59.115 45.455 0.00 0.00 0.00 3.16
285 286 2.621526 ACGGAAGAACACCAAATCCAAC 59.378 45.455 0.00 0.00 0.00 3.77
286 287 2.938838 ACGGAAGAACACCAAATCCAA 58.061 42.857 0.00 0.00 0.00 3.53
287 288 2.649531 ACGGAAGAACACCAAATCCA 57.350 45.000 0.00 0.00 0.00 3.41
288 289 3.626217 GGATACGGAAGAACACCAAATCC 59.374 47.826 0.00 0.00 33.95 3.01
289 290 4.332819 CAGGATACGGAAGAACACCAAATC 59.667 45.833 0.00 0.00 46.39 2.17
290 291 4.261801 CAGGATACGGAAGAACACCAAAT 58.738 43.478 0.00 0.00 46.39 2.32
291 292 3.670625 CAGGATACGGAAGAACACCAAA 58.329 45.455 0.00 0.00 46.39 3.28
292 293 2.614481 GCAGGATACGGAAGAACACCAA 60.614 50.000 0.00 0.00 46.39 3.67
293 294 1.066430 GCAGGATACGGAAGAACACCA 60.066 52.381 0.00 0.00 46.39 4.17
294 295 1.653151 GCAGGATACGGAAGAACACC 58.347 55.000 0.00 0.00 46.39 4.16
295 296 1.278238 CGCAGGATACGGAAGAACAC 58.722 55.000 0.00 0.00 46.39 3.32
296 297 0.892755 ACGCAGGATACGGAAGAACA 59.107 50.000 0.00 0.00 46.39 3.18
297 298 1.278238 CACGCAGGATACGGAAGAAC 58.722 55.000 0.00 0.00 46.39 3.01
298 299 0.174845 CCACGCAGGATACGGAAGAA 59.825 55.000 0.00 0.00 46.39 2.52
299 300 0.681887 TCCACGCAGGATACGGAAGA 60.682 55.000 0.00 0.00 43.07 2.87
300 301 1.813859 TCCACGCAGGATACGGAAG 59.186 57.895 0.00 0.00 43.07 3.46
301 302 4.021559 TCCACGCAGGATACGGAA 57.978 55.556 0.00 0.00 43.07 4.30
309 310 0.736636 TACGAGTACATCCACGCAGG 59.263 55.000 0.00 0.00 39.47 4.85
310 311 2.290916 AGATACGAGTACATCCACGCAG 59.709 50.000 0.00 0.00 0.00 5.18
311 312 2.294979 AGATACGAGTACATCCACGCA 58.705 47.619 0.00 0.00 0.00 5.24
312 313 3.497640 AGTAGATACGAGTACATCCACGC 59.502 47.826 0.00 0.00 0.00 5.34
313 314 4.510711 ACAGTAGATACGAGTACATCCACG 59.489 45.833 0.00 0.00 0.00 4.94
314 315 7.172875 ACATACAGTAGATACGAGTACATCCAC 59.827 40.741 0.00 0.00 0.00 4.02
315 316 7.222161 ACATACAGTAGATACGAGTACATCCA 58.778 38.462 0.00 0.00 0.00 3.41
316 317 7.603404 AGACATACAGTAGATACGAGTACATCC 59.397 40.741 0.00 0.00 0.00 3.51
317 318 8.537049 AGACATACAGTAGATACGAGTACATC 57.463 38.462 0.00 0.00 0.00 3.06
318 319 7.603404 GGAGACATACAGTAGATACGAGTACAT 59.397 40.741 0.00 0.00 0.00 2.29
319 320 6.927936 GGAGACATACAGTAGATACGAGTACA 59.072 42.308 0.00 0.00 0.00 2.90
320 321 7.153985 AGGAGACATACAGTAGATACGAGTAC 58.846 42.308 0.00 0.00 0.00 2.73
321 322 7.300556 AGGAGACATACAGTAGATACGAGTA 57.699 40.000 0.00 2.38 0.00 2.59
322 323 6.177310 AGGAGACATACAGTAGATACGAGT 57.823 41.667 0.00 0.00 0.00 4.18
323 324 6.483974 ACAAGGAGACATACAGTAGATACGAG 59.516 42.308 0.00 0.00 0.00 4.18
324 325 6.354938 ACAAGGAGACATACAGTAGATACGA 58.645 40.000 0.00 0.00 0.00 3.43
325 326 6.621316 ACAAGGAGACATACAGTAGATACG 57.379 41.667 0.00 0.00 0.00 3.06
326 327 9.900710 CATTACAAGGAGACATACAGTAGATAC 57.099 37.037 0.00 0.00 0.00 2.24
327 328 9.642343 ACATTACAAGGAGACATACAGTAGATA 57.358 33.333 0.00 0.00 0.00 1.98
328 329 8.540507 ACATTACAAGGAGACATACAGTAGAT 57.459 34.615 0.00 0.00 0.00 1.98
329 330 7.956328 ACATTACAAGGAGACATACAGTAGA 57.044 36.000 0.00 0.00 0.00 2.59
330 331 9.436957 AAAACATTACAAGGAGACATACAGTAG 57.563 33.333 0.00 0.00 0.00 2.57
331 332 9.431887 GAAAACATTACAAGGAGACATACAGTA 57.568 33.333 0.00 0.00 0.00 2.74
332 333 7.390718 GGAAAACATTACAAGGAGACATACAGT 59.609 37.037 0.00 0.00 0.00 3.55
333 334 7.607991 AGGAAAACATTACAAGGAGACATACAG 59.392 37.037 0.00 0.00 0.00 2.74
334 335 7.458397 AGGAAAACATTACAAGGAGACATACA 58.542 34.615 0.00 0.00 0.00 2.29
335 336 7.923414 AGGAAAACATTACAAGGAGACATAC 57.077 36.000 0.00 0.00 0.00 2.39
337 338 8.793592 GTTAAGGAAAACATTACAAGGAGACAT 58.206 33.333 0.00 0.00 0.00 3.06
338 339 7.776030 TGTTAAGGAAAACATTACAAGGAGACA 59.224 33.333 0.00 0.00 34.50 3.41
339 340 8.161699 TGTTAAGGAAAACATTACAAGGAGAC 57.838 34.615 0.00 0.00 34.50 3.36
340 341 8.934023 ATGTTAAGGAAAACATTACAAGGAGA 57.066 30.769 0.00 0.00 45.54 3.71
368 369 9.893634 TTTTTGAGGGAAATACTCGTGATTATA 57.106 29.630 0.00 0.00 37.79 0.98
369 370 8.801882 TTTTTGAGGGAAATACTCGTGATTAT 57.198 30.769 0.00 0.00 37.79 1.28
867 869 3.499737 GTTGTGGGCTGGCGATCG 61.500 66.667 11.69 11.69 0.00 3.69
873 875 2.978010 GTGTCGGTTGTGGGCTGG 60.978 66.667 0.00 0.00 0.00 4.85
924 926 0.044702 TGGATGGAGTGGAGGTGGAT 59.955 55.000 0.00 0.00 0.00 3.41
945 947 3.397613 ATCGCCTGCCTTGCTCTCC 62.398 63.158 0.00 0.00 0.00 3.71
968 977 4.203076 GGGGATCGACGGTCGTGG 62.203 72.222 27.53 1.67 41.35 4.94
1080 1089 1.541672 CTCCTCCTCCTCCTCCTCC 59.458 68.421 0.00 0.00 0.00 4.30
1086 1095 1.231928 GTCCTCCTCCTCCTCCTCC 59.768 68.421 0.00 0.00 0.00 4.30
1087 1096 0.396556 GTGTCCTCCTCCTCCTCCTC 60.397 65.000 0.00 0.00 0.00 3.71
1088 1097 1.700985 GTGTCCTCCTCCTCCTCCT 59.299 63.158 0.00 0.00 0.00 3.69
1089 1098 1.755008 CGTGTCCTCCTCCTCCTCC 60.755 68.421 0.00 0.00 0.00 4.30
1090 1099 1.755008 CCGTGTCCTCCTCCTCCTC 60.755 68.421 0.00 0.00 0.00 3.71
1091 1100 2.360980 CCGTGTCCTCCTCCTCCT 59.639 66.667 0.00 0.00 0.00 3.69
1092 1101 2.760385 CCCGTGTCCTCCTCCTCC 60.760 72.222 0.00 0.00 0.00 4.30
1093 1102 3.462678 GCCCGTGTCCTCCTCCTC 61.463 72.222 0.00 0.00 0.00 3.71
1315 1339 3.611433 CGTGGCCGTGTACTACTAC 57.389 57.895 0.00 0.00 0.00 2.73
1341 1365 2.228343 ACCACCTCGAAGAAGAACGTAG 59.772 50.000 0.00 0.00 34.09 3.51
1372 1396 6.668323 TGGAGAAATCAAAACGAATCAGAAC 58.332 36.000 0.00 0.00 0.00 3.01
1617 1644 2.447443 CCCCCTCTTTTCTTACTTGCC 58.553 52.381 0.00 0.00 0.00 4.52
1660 1687 5.423886 AGCTTGGATGAAGTTTAGCTAGTC 58.576 41.667 0.00 0.00 37.21 2.59
1690 1717 6.723282 CAAGTGAGAAAAAGAGAAGACCAAG 58.277 40.000 0.00 0.00 0.00 3.61
1761 1789 6.180472 GTTTGATCCCATCTTTCCTTACTCA 58.820 40.000 0.00 0.00 0.00 3.41
1828 1862 0.037160 ATTCCCGCCGTGGTTTTAGT 59.963 50.000 0.00 0.00 35.15 2.24
1856 1890 9.838339 CACAAAATCATAATAACTACTCCCTCT 57.162 33.333 0.00 0.00 0.00 3.69
1977 2011 1.577922 GCATATGATGTGCCGGCAG 59.422 57.895 33.73 17.10 36.61 4.85
1978 2012 3.748623 GCATATGATGTGCCGGCA 58.251 55.556 29.03 29.03 36.61 5.69
2143 2177 5.096521 ACCAGATATCCAGCTATTCCATCA 58.903 41.667 0.00 0.00 0.00 3.07
2146 2180 5.912149 AAACCAGATATCCAGCTATTCCA 57.088 39.130 0.00 0.00 0.00 3.53
2260 2295 4.581409 GGGTAAAAAGAACAGTACTTGGCA 59.419 41.667 0.00 0.00 0.00 4.92
2267 2302 7.981142 ACAATAGAGGGGTAAAAAGAACAGTA 58.019 34.615 0.00 0.00 0.00 2.74
2373 2409 2.800541 CCTGCTCGCCAGCCTATCA 61.801 63.158 0.00 0.00 46.26 2.15
2436 2480 7.646526 CCGTGTAGTCGATAAACTGATAAATCA 59.353 37.037 0.00 0.00 35.16 2.57
2444 2488 3.850273 GTCACCGTGTAGTCGATAAACTG 59.150 47.826 0.00 0.00 0.00 3.16
2454 2498 2.961062 ACTTGTAAGGTCACCGTGTAGT 59.039 45.455 0.00 0.00 0.00 2.73
2506 2550 5.584551 AGGTCCTGTTCAAGAATTTACCT 57.415 39.130 0.00 0.00 0.00 3.08
2546 2591 7.395617 TGTAGTGTTTTATACATGGCCAACTA 58.604 34.615 10.96 5.97 39.39 2.24
2635 2680 2.037902 TGTGTGTCCTCTTGCCGAATTA 59.962 45.455 0.00 0.00 0.00 1.40
2728 2778 7.051000 GCATTTTAGGGTCATAGACTCTCTTT 58.949 38.462 2.27 0.00 39.45 2.52
2729 2779 6.385467 AGCATTTTAGGGTCATAGACTCTCTT 59.615 38.462 2.27 0.00 39.45 2.85
2730 2780 5.902431 AGCATTTTAGGGTCATAGACTCTCT 59.098 40.000 2.27 0.00 39.45 3.10
2731 2781 6.168270 AGCATTTTAGGGTCATAGACTCTC 57.832 41.667 2.27 0.00 39.45 3.20
2732 2782 7.510685 TCATAGCATTTTAGGGTCATAGACTCT 59.489 37.037 4.78 4.78 46.13 3.24
2832 2888 4.262506 GCCTAAGGACTACAACAACTGAGT 60.263 45.833 0.00 0.00 0.00 3.41
2987 3043 7.067251 ACACAAGTCGTTTGGTTAATTAGGAAA 59.933 33.333 7.20 0.00 41.25 3.13
3188 3244 8.527810 TCGATATGAACCATATGCTTGTATACA 58.472 33.333 0.08 0.08 37.20 2.29
3189 3245 8.926715 TCGATATGAACCATATGCTTGTATAC 57.073 34.615 4.37 0.00 37.20 1.47
3234 3292 8.159447 ACACTCATATACAAGCATATGGTTCAT 58.841 33.333 17.04 14.71 38.75 2.57
3235 3293 7.508687 ACACTCATATACAAGCATATGGTTCA 58.491 34.615 17.04 8.79 38.75 3.18
3236 3294 7.875041 AGACACTCATATACAAGCATATGGTTC 59.125 37.037 17.04 2.11 38.75 3.62
3237 3295 7.739825 AGACACTCATATACAAGCATATGGTT 58.260 34.615 14.31 14.31 38.75 3.67
3238 3296 7.308450 AGACACTCATATACAAGCATATGGT 57.692 36.000 0.40 0.40 38.75 3.55
3239 3297 8.613060 AAAGACACTCATATACAAGCATATGG 57.387 34.615 4.56 0.00 38.75 2.74
3251 3309 9.388506 CTCCACTGAATAAAAAGACACTCATAT 57.611 33.333 0.00 0.00 0.00 1.78
3252 3310 7.334421 GCTCCACTGAATAAAAAGACACTCATA 59.666 37.037 0.00 0.00 0.00 2.15
3253 3311 6.150140 GCTCCACTGAATAAAAAGACACTCAT 59.850 38.462 0.00 0.00 0.00 2.90
3254 3312 5.470098 GCTCCACTGAATAAAAAGACACTCA 59.530 40.000 0.00 0.00 0.00 3.41
3255 3313 5.703130 AGCTCCACTGAATAAAAAGACACTC 59.297 40.000 0.00 0.00 0.00 3.51
3256 3314 5.625150 AGCTCCACTGAATAAAAAGACACT 58.375 37.500 0.00 0.00 0.00 3.55
3257 3315 5.948992 AGCTCCACTGAATAAAAAGACAC 57.051 39.130 0.00 0.00 0.00 3.67
3258 3316 6.959639 AAAGCTCCACTGAATAAAAAGACA 57.040 33.333 0.00 0.00 0.00 3.41
3401 3459 2.969821 TGTGCCTTAACCCACTTCAT 57.030 45.000 0.00 0.00 33.26 2.57
3449 3508 5.297547 TCCAGATAAAAGAATCCGATTCCG 58.702 41.667 16.09 0.00 40.13 4.30
3520 3579 5.807520 TGAACTTTCTCTAGTGATCAATCGC 59.192 40.000 0.00 0.00 37.57 4.58
3713 3866 7.953752 ACTCCCTCCGTAAAGAAATATAAGAG 58.046 38.462 0.00 0.00 0.00 2.85
3759 3912 6.734104 ACTTCAAGCTGCTTTCTTATACAG 57.266 37.500 13.10 0.00 0.00 2.74
3760 3913 6.072508 CCAACTTCAAGCTGCTTTCTTATACA 60.073 38.462 13.10 0.00 0.00 2.29
3761 3914 6.072452 ACCAACTTCAAGCTGCTTTCTTATAC 60.072 38.462 13.10 0.00 0.00 1.47
3762 3915 6.003950 ACCAACTTCAAGCTGCTTTCTTATA 58.996 36.000 13.10 0.00 0.00 0.98
3763 3916 4.829492 ACCAACTTCAAGCTGCTTTCTTAT 59.171 37.500 13.10 0.00 0.00 1.73
3853 4009 4.816786 AATGAAAAATGCCACTTTGTGC 57.183 36.364 0.00 0.00 31.34 4.57
3880 4036 5.244626 AGCAACATCCATTTTCAGTAAGCTT 59.755 36.000 3.48 3.48 0.00 3.74
3961 4117 7.839705 TCTGTAGAACATTCCAGTACCTAGAAT 59.160 37.037 0.00 0.00 0.00 2.40
4014 4171 8.403236 CAAATGAGAATTTGATATGCAGTCAGA 58.597 33.333 5.44 1.87 42.47 3.27
4163 4339 1.655484 CCAGTTCGATGCTGCACATA 58.345 50.000 3.57 0.00 39.84 2.29
4186 4362 1.522668 TCCTCAAGCATCCAACAACG 58.477 50.000 0.00 0.00 0.00 4.10
4211 4387 1.822371 TGATGTTAGACACCAGCGCTA 59.178 47.619 10.99 0.00 0.00 4.26
4363 4539 1.153086 CCCAGAGGCTGCCATGTAC 60.153 63.158 22.65 6.59 0.00 2.90
4364 4540 2.377810 CCCCAGAGGCTGCCATGTA 61.378 63.158 22.65 0.00 0.00 2.29
4365 4541 3.736224 CCCCAGAGGCTGCCATGT 61.736 66.667 22.65 0.00 0.00 3.21
4366 4542 4.517934 CCCCCAGAGGCTGCCATG 62.518 72.222 22.65 18.19 0.00 3.66
4404 4580 2.030540 TCGGCCATGTTACTAGATACGC 60.031 50.000 2.24 0.00 0.00 4.42
4723 4931 0.103572 AAGCTTTGCCACAACAGCAG 59.896 50.000 0.00 0.00 42.17 4.24
4724 4932 0.536260 AAAGCTTTGCCACAACAGCA 59.464 45.000 11.80 0.00 38.81 4.41
4733 4941 6.693113 GCAGTATTATCTACAAAAGCTTTGCC 59.307 38.462 13.54 0.00 0.00 4.52
4752 4960 5.005740 TCAGTTGCATCTTTTGAGCAGTAT 58.994 37.500 0.00 0.00 39.72 2.12
4770 4978 2.283145 AGAAGTTGCTGGCATCAGTT 57.717 45.000 6.44 0.00 42.78 3.16
4801 5009 3.559069 CCAGCCTACATGATTTGGACAT 58.441 45.455 0.00 0.00 0.00 3.06
4806 5014 3.755378 GCTATCCCAGCCTACATGATTTG 59.245 47.826 0.00 0.00 45.23 2.32
4808 5016 3.710209 GCTATCCCAGCCTACATGATT 57.290 47.619 0.00 0.00 45.23 2.57
4886 5096 6.845758 TTGGATTCATCAAAAGCTCTTCAT 57.154 33.333 0.00 0.00 0.00 2.57
4916 5126 2.280628 CTCGTCCCTTAGTTCCATTGC 58.719 52.381 0.00 0.00 0.00 3.56
4942 5152 1.606668 TGCCGTTTTCACAGGAATCAC 59.393 47.619 0.00 0.00 31.93 3.06
5124 5337 3.126831 CTCGTGATCAATTACCAGCCTC 58.873 50.000 0.00 0.00 0.00 4.70
5156 5369 3.821033 GGTGTCTGTTACTTGCCTGATTT 59.179 43.478 0.00 0.00 0.00 2.17
5242 5455 6.270000 TGGGGAGTATATTCTTGGTACTGATG 59.730 42.308 0.00 0.00 0.00 3.07
5245 5458 6.126883 TGTTGGGGAGTATATTCTTGGTACTG 60.127 42.308 0.00 0.00 0.00 2.74
5246 5459 5.968167 TGTTGGGGAGTATATTCTTGGTACT 59.032 40.000 0.00 0.00 0.00 2.73
5247 5460 6.243216 TGTTGGGGAGTATATTCTTGGTAC 57.757 41.667 0.00 0.00 0.00 3.34
5248 5461 5.163237 GCTGTTGGGGAGTATATTCTTGGTA 60.163 44.000 0.00 0.00 0.00 3.25
5249 5462 4.385310 GCTGTTGGGGAGTATATTCTTGGT 60.385 45.833 0.00 0.00 0.00 3.67
5250 5463 4.137543 GCTGTTGGGGAGTATATTCTTGG 58.862 47.826 0.00 0.00 0.00 3.61
5251 5464 4.576463 GTGCTGTTGGGGAGTATATTCTTG 59.424 45.833 0.00 0.00 0.00 3.02
5252 5465 4.385310 GGTGCTGTTGGGGAGTATATTCTT 60.385 45.833 0.00 0.00 0.00 2.52
5253 5466 3.136626 GGTGCTGTTGGGGAGTATATTCT 59.863 47.826 0.00 0.00 0.00 2.40
5254 5467 3.118038 TGGTGCTGTTGGGGAGTATATTC 60.118 47.826 0.00 0.00 0.00 1.75
5255 5468 2.849943 TGGTGCTGTTGGGGAGTATATT 59.150 45.455 0.00 0.00 0.00 1.28
5256 5469 2.487775 TGGTGCTGTTGGGGAGTATAT 58.512 47.619 0.00 0.00 0.00 0.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.