Multiple sequence alignment - TraesCS5A01G164600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G164600 chr5A 100.000 4903 0 0 1 4903 353188151 353193053 0.000000e+00 9055.0
1 TraesCS5A01G164600 chr5D 94.997 3818 132 22 527 4326 265666871 265670647 0.000000e+00 5938.0
2 TraesCS5A01G164600 chr5D 96.774 62 2 0 4839 4900 265671376 265671437 2.410000e-18 104.0
3 TraesCS5A01G164600 chr5B 94.301 3562 152 20 527 4065 299019850 299023383 0.000000e+00 5406.0
4 TraesCS5A01G164600 chr5B 89.412 85 1 4 4820 4903 299023735 299023812 3.120000e-17 100.0
5 TraesCS5A01G164600 chr5B 100.000 39 0 0 4820 4858 299024970 299025008 6.810000e-09 73.1
6 TraesCS5A01G164600 chr1A 93.575 358 20 1 4327 4681 103628323 103628680 9.340000e-147 531.0
7 TraesCS5A01G164600 chr1A 92.329 365 21 1 4327 4684 103630430 103630794 3.380000e-141 512.0
8 TraesCS5A01G164600 chr1A 92.676 355 19 1 4325 4672 63751682 63752036 5.660000e-139 505.0
9 TraesCS5A01G164600 chr1A 91.713 362 23 1 4327 4681 548467104 548467465 3.410000e-136 496.0
10 TraesCS5A01G164600 chr1A 89.973 369 23 1 4327 4681 63753785 63754153 9.610000e-127 464.0
11 TraesCS5A01G164600 chr1A 97.661 171 3 1 360 529 322177189 322177359 4.800000e-75 292.0
12 TraesCS5A01G164600 chr1A 96.089 179 4 2 353 528 33222012 33222190 6.210000e-74 289.0
13 TraesCS5A01G164600 chr1A 85.185 189 26 2 1 188 104431174 104431361 5.010000e-45 193.0
14 TraesCS5A01G164600 chr7A 92.265 362 21 1 4327 4681 17840619 17840980 1.570000e-139 507.0
15 TraesCS5A01G164600 chr7A 92.033 364 22 1 4327 4683 17842734 17843097 5.660000e-139 505.0
16 TraesCS5A01G164600 chr7A 88.430 363 26 3 4326 4681 13230406 13230759 1.630000e-114 424.0
17 TraesCS5A01G164600 chr6A 91.989 362 22 1 4327 4681 585487768 585488129 7.330000e-138 501.0
18 TraesCS5A01G164600 chr7D 89.136 359 23 5 4330 4681 605248779 605249128 2.710000e-117 433.0
19 TraesCS5A01G164600 chr2A 97.159 176 5 0 353 528 478761346 478761521 1.030000e-76 298.0
20 TraesCS5A01G164600 chr2A 97.143 175 5 0 362 536 61476165 61475991 3.710000e-76 296.0
21 TraesCS5A01G164600 chr2A 97.674 172 3 1 358 528 609646319 609646490 1.330000e-75 294.0
22 TraesCS5A01G164600 chr2A 95.977 174 7 0 364 537 326164056 326163883 2.890000e-72 283.0
23 TraesCS5A01G164600 chr3B 98.214 168 3 0 361 528 117922393 117922560 1.330000e-75 294.0
24 TraesCS5A01G164600 chr4A 96.089 179 7 0 364 542 320699694 320699872 4.800000e-75 292.0
25 TraesCS5A01G164600 chr6B 93.684 190 10 2 352 541 718313661 718313848 2.890000e-72 283.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G164600 chr5A 353188151 353193053 4902 False 9055.0 9055 100.0000 1 4903 1 chr5A.!!$F1 4902
1 TraesCS5A01G164600 chr5D 265666871 265671437 4566 False 3021.0 5938 95.8855 527 4900 2 chr5D.!!$F1 4373
2 TraesCS5A01G164600 chr5B 299019850 299025008 5158 False 1859.7 5406 94.5710 527 4903 3 chr5B.!!$F1 4376
3 TraesCS5A01G164600 chr1A 103628323 103630794 2471 False 521.5 531 92.9520 4327 4684 2 chr1A.!!$F6 357
4 TraesCS5A01G164600 chr1A 63751682 63754153 2471 False 484.5 505 91.3245 4325 4681 2 chr1A.!!$F5 356
5 TraesCS5A01G164600 chr7A 17840619 17843097 2478 False 506.0 507 92.1490 4327 4683 2 chr7A.!!$F2 356

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
23 24 0.039256 CTGCCACCATCAAAACACCG 60.039 55.0 0.00 0.00 0.00 4.94 F
25 26 0.039527 GCCACCATCAAAACACCGAC 60.040 55.0 0.00 0.00 0.00 4.79 F
312 313 0.109412 GCATGGCAGAGTCAAGCAAC 60.109 55.0 9.41 0.00 31.94 4.17 F
315 316 0.250467 TGGCAGAGTCAAGCAACCTC 60.250 55.0 9.41 0.00 0.00 3.85 F
909 913 0.455295 CTCGCGGCGCCAAAATTAAA 60.455 50.0 28.98 1.02 0.00 1.52 F
2495 2522 0.249073 CGGGATGCTGAACTAGTCCG 60.249 60.0 0.00 0.00 0.00 4.79 F
3141 3173 0.825010 CATGGGCAGCATAAGGGGAC 60.825 60.0 0.00 0.00 0.00 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1694 1715 3.059884 CGATTGCAATATAGCGTGGACT 58.940 45.455 12.97 0.0 37.31 3.85 R
1953 1977 6.324819 CAAAAATATCACACCACAGATCACC 58.675 40.000 0.00 0.0 0.00 4.02 R
2278 2303 1.280421 AGTCTGCTCCAGGGATTTCAC 59.720 52.381 0.00 0.0 31.51 3.18 R
2389 2416 5.621228 CAGAGCACGTTAAATGACAAAGAAC 59.379 40.000 0.00 0.0 0.00 3.01 R
2948 2980 0.318120 AAATGCCTGAAAACTGCCCG 59.682 50.000 0.00 0.0 0.00 6.13 R
3319 3351 1.001378 GTTGCGCTGGATTTCACAACT 60.001 47.619 9.73 0.0 35.64 3.16 R
4733 6908 1.003355 CGGCAGGAGCAAAGAAGGA 60.003 57.895 0.00 0.0 44.61 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.372730 GCCGCTGCCACCATCAAA 61.373 61.111 0.00 0.00 0.00 2.69
18 19 2.929903 GCCGCTGCCACCATCAAAA 61.930 57.895 0.00 0.00 0.00 2.44
19 20 1.080569 CCGCTGCCACCATCAAAAC 60.081 57.895 0.00 0.00 0.00 2.43
20 21 1.659233 CGCTGCCACCATCAAAACA 59.341 52.632 0.00 0.00 0.00 2.83
21 22 0.664166 CGCTGCCACCATCAAAACAC 60.664 55.000 0.00 0.00 0.00 3.32
22 23 0.319813 GCTGCCACCATCAAAACACC 60.320 55.000 0.00 0.00 0.00 4.16
23 24 0.039256 CTGCCACCATCAAAACACCG 60.039 55.000 0.00 0.00 0.00 4.94
24 25 0.466372 TGCCACCATCAAAACACCGA 60.466 50.000 0.00 0.00 0.00 4.69
25 26 0.039527 GCCACCATCAAAACACCGAC 60.040 55.000 0.00 0.00 0.00 4.79
26 27 1.313772 CCACCATCAAAACACCGACA 58.686 50.000 0.00 0.00 0.00 4.35
27 28 1.001815 CCACCATCAAAACACCGACAC 60.002 52.381 0.00 0.00 0.00 3.67
28 29 1.001815 CACCATCAAAACACCGACACC 60.002 52.381 0.00 0.00 0.00 4.16
29 30 1.133915 ACCATCAAAACACCGACACCT 60.134 47.619 0.00 0.00 0.00 4.00
30 31 2.105134 ACCATCAAAACACCGACACCTA 59.895 45.455 0.00 0.00 0.00 3.08
31 32 3.142951 CCATCAAAACACCGACACCTAA 58.857 45.455 0.00 0.00 0.00 2.69
32 33 3.566322 CCATCAAAACACCGACACCTAAA 59.434 43.478 0.00 0.00 0.00 1.85
33 34 4.036971 CCATCAAAACACCGACACCTAAAA 59.963 41.667 0.00 0.00 0.00 1.52
34 35 4.619437 TCAAAACACCGACACCTAAAAC 57.381 40.909 0.00 0.00 0.00 2.43
35 36 3.063725 TCAAAACACCGACACCTAAAACG 59.936 43.478 0.00 0.00 0.00 3.60
36 37 2.314323 AACACCGACACCTAAAACGT 57.686 45.000 0.00 0.00 0.00 3.99
37 38 2.314323 ACACCGACACCTAAAACGTT 57.686 45.000 0.00 0.00 0.00 3.99
38 39 3.451141 ACACCGACACCTAAAACGTTA 57.549 42.857 0.00 0.00 0.00 3.18
39 40 3.993920 ACACCGACACCTAAAACGTTAT 58.006 40.909 0.00 0.00 0.00 1.89
40 41 3.989817 ACACCGACACCTAAAACGTTATC 59.010 43.478 0.00 0.00 0.00 1.75
41 42 3.368843 CACCGACACCTAAAACGTTATCC 59.631 47.826 0.00 0.00 0.00 2.59
42 43 2.931969 CCGACACCTAAAACGTTATCCC 59.068 50.000 0.00 0.00 0.00 3.85
43 44 3.368739 CCGACACCTAAAACGTTATCCCT 60.369 47.826 0.00 0.00 0.00 4.20
44 45 4.142182 CCGACACCTAAAACGTTATCCCTA 60.142 45.833 0.00 0.00 0.00 3.53
45 46 5.039333 CGACACCTAAAACGTTATCCCTAG 58.961 45.833 0.00 0.00 0.00 3.02
46 47 5.393461 CGACACCTAAAACGTTATCCCTAGT 60.393 44.000 0.00 0.00 0.00 2.57
47 48 6.183360 CGACACCTAAAACGTTATCCCTAGTA 60.183 42.308 0.00 0.00 0.00 1.82
48 49 7.469181 CGACACCTAAAACGTTATCCCTAGTAT 60.469 40.741 0.00 0.00 0.00 2.12
49 50 7.495055 ACACCTAAAACGTTATCCCTAGTATG 58.505 38.462 0.00 2.35 0.00 2.39
50 51 7.124750 ACACCTAAAACGTTATCCCTAGTATGT 59.875 37.037 0.00 2.88 0.00 2.29
51 52 8.632679 CACCTAAAACGTTATCCCTAGTATGTA 58.367 37.037 0.00 0.00 0.00 2.29
52 53 8.633561 ACCTAAAACGTTATCCCTAGTATGTAC 58.366 37.037 0.00 0.00 0.00 2.90
53 54 8.632679 CCTAAAACGTTATCCCTAGTATGTACA 58.367 37.037 0.00 0.00 0.00 2.90
54 55 9.674824 CTAAAACGTTATCCCTAGTATGTACAG 57.325 37.037 0.00 0.00 0.00 2.74
55 56 7.886629 AAACGTTATCCCTAGTATGTACAGA 57.113 36.000 0.00 0.00 0.00 3.41
56 57 6.874288 ACGTTATCCCTAGTATGTACAGAC 57.126 41.667 12.75 12.75 0.00 3.51
57 58 6.359804 ACGTTATCCCTAGTATGTACAGACA 58.640 40.000 21.83 7.80 40.72 3.41
58 59 6.485984 ACGTTATCCCTAGTATGTACAGACAG 59.514 42.308 21.83 15.64 39.50 3.51
59 60 6.709397 CGTTATCCCTAGTATGTACAGACAGA 59.291 42.308 21.83 12.83 39.50 3.41
60 61 7.095144 CGTTATCCCTAGTATGTACAGACAGAG 60.095 44.444 21.83 16.90 39.50 3.35
61 62 5.050126 TCCCTAGTATGTACAGACAGAGG 57.950 47.826 24.40 24.40 39.50 3.69
62 63 4.141228 TCCCTAGTATGTACAGACAGAGGG 60.141 50.000 34.10 34.10 41.93 4.30
63 64 3.570550 CCTAGTATGTACAGACAGAGGGC 59.429 52.174 23.95 0.05 39.50 5.19
64 65 3.101643 AGTATGTACAGACAGAGGGCA 57.898 47.619 21.83 0.00 39.50 5.36
65 66 2.761208 AGTATGTACAGACAGAGGGCAC 59.239 50.000 21.83 0.00 39.50 5.01
66 67 1.644509 ATGTACAGACAGAGGGCACA 58.355 50.000 0.33 0.00 39.50 4.57
67 68 1.419381 TGTACAGACAGAGGGCACAA 58.581 50.000 0.00 0.00 0.00 3.33
68 69 1.765904 TGTACAGACAGAGGGCACAAA 59.234 47.619 0.00 0.00 0.00 2.83
69 70 2.371841 TGTACAGACAGAGGGCACAAAT 59.628 45.455 0.00 0.00 0.00 2.32
70 71 2.664402 ACAGACAGAGGGCACAAATT 57.336 45.000 0.00 0.00 0.00 1.82
71 72 2.508526 ACAGACAGAGGGCACAAATTC 58.491 47.619 0.00 0.00 0.00 2.17
72 73 2.158623 ACAGACAGAGGGCACAAATTCA 60.159 45.455 0.00 0.00 0.00 2.57
73 74 2.486982 CAGACAGAGGGCACAAATTCAG 59.513 50.000 0.00 0.00 0.00 3.02
74 75 1.815003 GACAGAGGGCACAAATTCAGG 59.185 52.381 0.00 0.00 0.00 3.86
75 76 1.180029 CAGAGGGCACAAATTCAGGG 58.820 55.000 0.00 0.00 0.00 4.45
76 77 0.613012 AGAGGGCACAAATTCAGGGC 60.613 55.000 0.00 0.00 0.00 5.19
77 78 0.613012 GAGGGCACAAATTCAGGGCT 60.613 55.000 5.24 0.00 0.00 5.19
78 79 0.613012 AGGGCACAAATTCAGGGCTC 60.613 55.000 5.24 1.30 0.00 4.70
79 80 0.613012 GGGCACAAATTCAGGGCTCT 60.613 55.000 5.24 0.00 0.00 4.09
80 81 0.813821 GGCACAAATTCAGGGCTCTC 59.186 55.000 5.24 0.00 0.00 3.20
81 82 0.813821 GCACAAATTCAGGGCTCTCC 59.186 55.000 0.00 0.00 0.00 3.71
82 83 1.887956 GCACAAATTCAGGGCTCTCCA 60.888 52.381 0.00 0.00 38.24 3.86
83 84 2.517959 CACAAATTCAGGGCTCTCCAA 58.482 47.619 0.00 0.00 38.24 3.53
84 85 2.229784 CACAAATTCAGGGCTCTCCAAC 59.770 50.000 0.00 0.00 38.24 3.77
85 86 2.108952 ACAAATTCAGGGCTCTCCAACT 59.891 45.455 0.00 0.00 38.24 3.16
86 87 2.751806 CAAATTCAGGGCTCTCCAACTC 59.248 50.000 0.00 0.00 38.24 3.01
87 88 1.963985 ATTCAGGGCTCTCCAACTCT 58.036 50.000 0.00 0.00 38.24 3.24
88 89 1.270907 TTCAGGGCTCTCCAACTCTC 58.729 55.000 0.00 0.00 38.24 3.20
89 90 0.616111 TCAGGGCTCTCCAACTCTCC 60.616 60.000 0.00 0.00 38.24 3.71
90 91 1.306568 AGGGCTCTCCAACTCTCCC 60.307 63.158 0.00 0.00 38.24 4.30
91 92 1.613630 GGGCTCTCCAACTCTCCCA 60.614 63.158 0.00 0.00 34.01 4.37
92 93 1.599576 GGCTCTCCAACTCTCCCAC 59.400 63.158 0.00 0.00 0.00 4.61
93 94 1.599576 GCTCTCCAACTCTCCCACC 59.400 63.158 0.00 0.00 0.00 4.61
94 95 1.893786 CTCTCCAACTCTCCCACCG 59.106 63.158 0.00 0.00 0.00 4.94
95 96 2.232298 CTCTCCAACTCTCCCACCGC 62.232 65.000 0.00 0.00 0.00 5.68
96 97 3.316573 CTCCAACTCTCCCACCGCC 62.317 68.421 0.00 0.00 0.00 6.13
97 98 4.760047 CCAACTCTCCCACCGCCG 62.760 72.222 0.00 0.00 0.00 6.46
157 158 2.434774 GGCCAACCGAGGGAACTT 59.565 61.111 0.00 0.00 44.43 2.66
158 159 1.674651 GGCCAACCGAGGGAACTTC 60.675 63.158 0.00 0.00 44.43 3.01
159 160 1.375326 GCCAACCGAGGGAACTTCT 59.625 57.895 0.00 0.00 44.43 2.85
160 161 0.673956 GCCAACCGAGGGAACTTCTC 60.674 60.000 0.00 0.00 44.43 2.87
161 162 0.977395 CCAACCGAGGGAACTTCTCT 59.023 55.000 0.00 0.00 44.43 3.10
162 163 1.338200 CCAACCGAGGGAACTTCTCTG 60.338 57.143 0.00 0.00 44.43 3.35
163 164 0.321996 AACCGAGGGAACTTCTCTGC 59.678 55.000 0.00 0.00 44.43 4.26
164 165 0.832135 ACCGAGGGAACTTCTCTGCA 60.832 55.000 0.00 0.00 44.43 4.41
165 166 0.539051 CCGAGGGAACTTCTCTGCAT 59.461 55.000 0.00 0.00 44.43 3.96
166 167 1.065854 CCGAGGGAACTTCTCTGCATT 60.066 52.381 0.00 0.00 44.43 3.56
167 168 2.275318 CGAGGGAACTTCTCTGCATTC 58.725 52.381 0.00 0.00 44.43 2.67
168 169 2.637947 GAGGGAACTTCTCTGCATTCC 58.362 52.381 6.03 6.03 44.43 3.01
169 170 2.238395 GAGGGAACTTCTCTGCATTCCT 59.762 50.000 12.91 0.00 44.43 3.36
170 171 2.646798 AGGGAACTTCTCTGCATTCCTT 59.353 45.455 12.91 4.23 40.47 3.36
171 172 3.075134 AGGGAACTTCTCTGCATTCCTTT 59.925 43.478 12.91 1.70 40.47 3.11
172 173 3.441922 GGGAACTTCTCTGCATTCCTTTC 59.558 47.826 12.91 1.17 40.47 2.62
173 174 3.126000 GGAACTTCTCTGCATTCCTTTCG 59.874 47.826 7.17 0.00 38.08 3.46
174 175 2.079925 ACTTCTCTGCATTCCTTTCGC 58.920 47.619 0.00 0.00 0.00 4.70
175 176 1.399791 CTTCTCTGCATTCCTTTCGCC 59.600 52.381 0.00 0.00 0.00 5.54
176 177 0.615331 TCTCTGCATTCCTTTCGCCT 59.385 50.000 0.00 0.00 0.00 5.52
177 178 1.012841 CTCTGCATTCCTTTCGCCTC 58.987 55.000 0.00 0.00 0.00 4.70
178 179 0.615331 TCTGCATTCCTTTCGCCTCT 59.385 50.000 0.00 0.00 0.00 3.69
179 180 1.003580 TCTGCATTCCTTTCGCCTCTT 59.996 47.619 0.00 0.00 0.00 2.85
180 181 1.131883 CTGCATTCCTTTCGCCTCTTG 59.868 52.381 0.00 0.00 0.00 3.02
181 182 0.179153 GCATTCCTTTCGCCTCTTGC 60.179 55.000 0.00 0.00 0.00 4.01
190 191 4.261888 GCCTCTTGCGAGAACGAA 57.738 55.556 4.90 0.00 42.66 3.85
191 192 1.782181 GCCTCTTGCGAGAACGAAC 59.218 57.895 4.90 0.00 42.66 3.95
192 193 1.627550 GCCTCTTGCGAGAACGAACC 61.628 60.000 4.90 0.00 42.66 3.62
193 194 1.344942 CCTCTTGCGAGAACGAACCG 61.345 60.000 4.90 0.00 42.66 4.44
197 198 3.824510 GCGAGAACGAACCGCGAC 61.825 66.667 8.23 0.00 44.57 5.19
198 199 2.126965 CGAGAACGAACCGCGACT 60.127 61.111 8.23 0.00 44.57 4.18
199 200 2.426183 CGAGAACGAACCGCGACTG 61.426 63.158 8.23 0.00 44.57 3.51
200 201 1.371389 GAGAACGAACCGCGACTGT 60.371 57.895 8.23 0.00 44.57 3.55
201 202 1.606350 GAGAACGAACCGCGACTGTG 61.606 60.000 8.23 0.00 44.57 3.66
202 203 1.659335 GAACGAACCGCGACTGTGA 60.659 57.895 8.23 0.00 44.57 3.58
203 204 1.210545 GAACGAACCGCGACTGTGAA 61.211 55.000 8.23 0.00 44.57 3.18
204 205 0.806884 AACGAACCGCGACTGTGAAA 60.807 50.000 8.23 0.00 44.57 2.69
205 206 1.213094 ACGAACCGCGACTGTGAAAG 61.213 55.000 8.23 0.00 44.57 2.62
206 207 0.937699 CGAACCGCGACTGTGAAAGA 60.938 55.000 8.23 0.00 44.57 2.52
207 208 1.214367 GAACCGCGACTGTGAAAGAA 58.786 50.000 8.23 0.00 0.00 2.52
208 209 1.595794 GAACCGCGACTGTGAAAGAAA 59.404 47.619 8.23 0.00 0.00 2.52
209 210 1.658994 ACCGCGACTGTGAAAGAAAA 58.341 45.000 8.23 0.00 0.00 2.29
210 211 1.597663 ACCGCGACTGTGAAAGAAAAG 59.402 47.619 8.23 0.00 0.00 2.27
211 212 1.660333 CCGCGACTGTGAAAGAAAAGC 60.660 52.381 8.23 0.00 0.00 3.51
212 213 1.003972 CGCGACTGTGAAAGAAAAGCA 60.004 47.619 0.00 0.00 0.00 3.91
213 214 2.538737 CGCGACTGTGAAAGAAAAGCAA 60.539 45.455 0.00 0.00 0.00 3.91
214 215 2.783832 GCGACTGTGAAAGAAAAGCAAC 59.216 45.455 0.00 0.00 0.00 4.17
215 216 3.029074 CGACTGTGAAAGAAAAGCAACG 58.971 45.455 0.00 0.00 0.00 4.10
216 217 2.783832 GACTGTGAAAGAAAAGCAACGC 59.216 45.455 0.00 0.00 0.00 4.84
217 218 2.163412 ACTGTGAAAGAAAAGCAACGCA 59.837 40.909 0.00 0.00 0.00 5.24
218 219 2.525055 TGTGAAAGAAAAGCAACGCAC 58.475 42.857 0.00 0.00 0.00 5.34
219 220 1.512771 GTGAAAGAAAAGCAACGCACG 59.487 47.619 0.00 0.00 0.00 5.34
220 221 1.131504 TGAAAGAAAAGCAACGCACGT 59.868 42.857 0.00 0.00 0.00 4.49
221 222 1.773525 GAAAGAAAAGCAACGCACGTC 59.226 47.619 0.00 0.00 0.00 4.34
222 223 1.014352 AAGAAAAGCAACGCACGTCT 58.986 45.000 0.00 0.00 0.00 4.18
223 224 0.304705 AGAAAAGCAACGCACGTCTG 59.695 50.000 0.00 0.00 0.00 3.51
224 225 1.262166 GAAAAGCAACGCACGTCTGC 61.262 55.000 16.90 16.90 40.38 4.26
225 226 1.714899 AAAAGCAACGCACGTCTGCT 61.715 50.000 19.71 19.71 41.77 4.24
226 227 0.878523 AAAGCAACGCACGTCTGCTA 60.879 50.000 23.15 0.00 41.77 3.49
227 228 0.670546 AAGCAACGCACGTCTGCTAT 60.671 50.000 23.15 15.04 41.77 2.97
228 229 0.670546 AGCAACGCACGTCTGCTATT 60.671 50.000 22.23 7.49 41.77 1.73
229 230 0.996462 GCAACGCACGTCTGCTATTA 59.004 50.000 17.17 0.00 41.77 0.98
230 231 1.266891 GCAACGCACGTCTGCTATTAC 60.267 52.381 17.17 0.00 41.77 1.89
231 232 1.989864 CAACGCACGTCTGCTATTACA 59.010 47.619 0.00 0.00 41.77 2.41
232 233 2.579207 ACGCACGTCTGCTATTACAT 57.421 45.000 0.00 0.00 41.77 2.29
233 234 2.888594 ACGCACGTCTGCTATTACATT 58.111 42.857 0.00 0.00 41.77 2.71
234 235 2.603110 ACGCACGTCTGCTATTACATTG 59.397 45.455 0.00 0.00 41.77 2.82
235 236 2.597505 CGCACGTCTGCTATTACATTGC 60.598 50.000 0.00 0.00 41.77 3.56
236 237 2.351418 GCACGTCTGCTATTACATTGCA 59.649 45.455 0.00 0.00 40.63 4.08
237 238 3.002656 GCACGTCTGCTATTACATTGCAT 59.997 43.478 0.00 0.00 40.05 3.96
238 239 4.496341 GCACGTCTGCTATTACATTGCATT 60.496 41.667 0.00 0.00 40.05 3.56
239 240 5.200454 CACGTCTGCTATTACATTGCATTC 58.800 41.667 0.00 0.00 40.05 2.67
240 241 5.007039 CACGTCTGCTATTACATTGCATTCT 59.993 40.000 0.00 0.00 40.05 2.40
241 242 5.586243 ACGTCTGCTATTACATTGCATTCTT 59.414 36.000 0.00 0.00 40.05 2.52
242 243 6.094048 ACGTCTGCTATTACATTGCATTCTTT 59.906 34.615 0.00 0.00 40.05 2.52
243 244 7.279981 ACGTCTGCTATTACATTGCATTCTTTA 59.720 33.333 0.00 0.00 40.05 1.85
244 245 8.122330 CGTCTGCTATTACATTGCATTCTTTAA 58.878 33.333 0.00 0.00 40.05 1.52
245 246 9.787532 GTCTGCTATTACATTGCATTCTTTAAA 57.212 29.630 0.00 0.00 40.05 1.52
294 295 8.192110 TCACCGATATTTTAAATTAAGTTGGGC 58.808 33.333 0.00 0.00 0.00 5.36
295 296 7.976734 CACCGATATTTTAAATTAAGTTGGGCA 59.023 33.333 0.00 0.00 0.00 5.36
296 297 8.700973 ACCGATATTTTAAATTAAGTTGGGCAT 58.299 29.630 0.00 0.00 0.00 4.40
297 298 8.977505 CCGATATTTTAAATTAAGTTGGGCATG 58.022 33.333 0.00 0.00 0.00 4.06
298 299 8.977505 CGATATTTTAAATTAAGTTGGGCATGG 58.022 33.333 0.00 0.00 0.00 3.66
299 300 8.675705 ATATTTTAAATTAAGTTGGGCATGGC 57.324 30.769 11.56 11.56 0.00 4.40
300 301 5.489792 TTTAAATTAAGTTGGGCATGGCA 57.510 34.783 22.06 4.40 0.00 4.92
301 302 3.615224 AAATTAAGTTGGGCATGGCAG 57.385 42.857 22.06 0.00 0.00 4.85
302 303 2.530460 ATTAAGTTGGGCATGGCAGA 57.470 45.000 22.06 5.61 0.00 4.26
303 304 1.838112 TTAAGTTGGGCATGGCAGAG 58.162 50.000 22.06 0.00 0.00 3.35
304 305 0.698238 TAAGTTGGGCATGGCAGAGT 59.302 50.000 22.06 8.53 0.00 3.24
305 306 0.610232 AAGTTGGGCATGGCAGAGTC 60.610 55.000 22.06 3.43 0.00 3.36
306 307 1.303561 GTTGGGCATGGCAGAGTCA 60.304 57.895 22.06 6.32 0.00 3.41
307 308 0.895100 GTTGGGCATGGCAGAGTCAA 60.895 55.000 22.06 12.31 0.00 3.18
308 309 0.609957 TTGGGCATGGCAGAGTCAAG 60.610 55.000 22.06 0.00 0.00 3.02
309 310 2.413142 GGGCATGGCAGAGTCAAGC 61.413 63.158 22.06 0.00 30.77 4.01
310 311 1.676635 GGCATGGCAGAGTCAAGCA 60.677 57.895 15.47 0.00 33.34 3.91
311 312 1.246056 GGCATGGCAGAGTCAAGCAA 61.246 55.000 15.47 0.00 33.34 3.91
312 313 0.109412 GCATGGCAGAGTCAAGCAAC 60.109 55.000 9.41 0.00 31.94 4.17
313 314 0.524862 CATGGCAGAGTCAAGCAACC 59.475 55.000 9.41 0.00 0.00 3.77
314 315 0.403271 ATGGCAGAGTCAAGCAACCT 59.597 50.000 9.41 0.00 0.00 3.50
315 316 0.250467 TGGCAGAGTCAAGCAACCTC 60.250 55.000 9.41 0.00 0.00 3.85
316 317 0.250467 GGCAGAGTCAAGCAACCTCA 60.250 55.000 9.41 0.00 0.00 3.86
317 318 1.597742 GCAGAGTCAAGCAACCTCAA 58.402 50.000 3.03 0.00 0.00 3.02
318 319 1.949525 GCAGAGTCAAGCAACCTCAAA 59.050 47.619 3.03 0.00 0.00 2.69
319 320 2.358898 GCAGAGTCAAGCAACCTCAAAA 59.641 45.455 3.03 0.00 0.00 2.44
320 321 3.793465 GCAGAGTCAAGCAACCTCAAAAC 60.793 47.826 3.03 0.00 0.00 2.43
321 322 3.629398 CAGAGTCAAGCAACCTCAAAACT 59.371 43.478 0.00 0.00 0.00 2.66
322 323 4.816385 CAGAGTCAAGCAACCTCAAAACTA 59.184 41.667 0.00 0.00 0.00 2.24
323 324 5.296780 CAGAGTCAAGCAACCTCAAAACTAA 59.703 40.000 0.00 0.00 0.00 2.24
324 325 5.529060 AGAGTCAAGCAACCTCAAAACTAAG 59.471 40.000 0.00 0.00 0.00 2.18
325 326 4.580580 AGTCAAGCAACCTCAAAACTAAGG 59.419 41.667 0.00 0.00 38.70 2.69
326 327 4.578928 GTCAAGCAACCTCAAAACTAAGGA 59.421 41.667 0.00 0.00 36.46 3.36
327 328 5.067283 GTCAAGCAACCTCAAAACTAAGGAA 59.933 40.000 0.00 0.00 36.46 3.36
328 329 5.654650 TCAAGCAACCTCAAAACTAAGGAAA 59.345 36.000 0.00 0.00 36.46 3.13
329 330 6.153680 TCAAGCAACCTCAAAACTAAGGAAAA 59.846 34.615 0.00 0.00 36.46 2.29
330 331 6.538945 AGCAACCTCAAAACTAAGGAAAAA 57.461 33.333 0.00 0.00 36.46 1.94
331 332 6.338146 AGCAACCTCAAAACTAAGGAAAAAC 58.662 36.000 0.00 0.00 36.46 2.43
332 333 6.071051 AGCAACCTCAAAACTAAGGAAAAACA 60.071 34.615 0.00 0.00 36.46 2.83
333 334 6.592220 GCAACCTCAAAACTAAGGAAAAACAA 59.408 34.615 0.00 0.00 36.46 2.83
334 335 7.279981 GCAACCTCAAAACTAAGGAAAAACAAT 59.720 33.333 0.00 0.00 36.46 2.71
335 336 9.810545 CAACCTCAAAACTAAGGAAAAACAATA 57.189 29.630 0.00 0.00 36.46 1.90
378 379 9.955102 AATAATAATAAATACTCCCTCCGTTCC 57.045 33.333 0.00 0.00 0.00 3.62
379 380 7.628501 AATAATAAATACTCCCTCCGTTCCT 57.371 36.000 0.00 0.00 0.00 3.36
380 381 8.731591 AATAATAAATACTCCCTCCGTTCCTA 57.268 34.615 0.00 0.00 0.00 2.94
381 382 8.731591 ATAATAAATACTCCCTCCGTTCCTAA 57.268 34.615 0.00 0.00 0.00 2.69
382 383 7.441903 AATAAATACTCCCTCCGTTCCTAAA 57.558 36.000 0.00 0.00 0.00 1.85
383 384 5.970501 AAATACTCCCTCCGTTCCTAAAT 57.029 39.130 0.00 0.00 0.00 1.40
384 385 8.731591 ATAAATACTCCCTCCGTTCCTAAATA 57.268 34.615 0.00 0.00 0.00 1.40
385 386 6.416631 AATACTCCCTCCGTTCCTAAATAC 57.583 41.667 0.00 0.00 0.00 1.89
386 387 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
387 388 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
388 389 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
389 390 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
390 391 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
391 392 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
392 393 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
393 394 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
394 395 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
395 396 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
396 397 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
397 398 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
398 399 7.491696 CCGTTCCTAAATACTTGTCTTTCTAGG 59.508 40.741 0.00 0.00 0.00 3.02
399 400 7.010275 CGTTCCTAAATACTTGTCTTTCTAGGC 59.990 40.741 0.00 0.00 0.00 3.93
400 401 7.490657 TCCTAAATACTTGTCTTTCTAGGCA 57.509 36.000 0.00 0.00 33.22 4.75
401 402 8.090788 TCCTAAATACTTGTCTTTCTAGGCAT 57.909 34.615 0.00 0.00 35.56 4.40
402 403 8.548877 TCCTAAATACTTGTCTTTCTAGGCATT 58.451 33.333 0.00 0.00 35.56 3.56
403 404 9.178758 CCTAAATACTTGTCTTTCTAGGCATTT 57.821 33.333 0.00 0.00 35.56 2.32
405 406 8.635765 AAATACTTGTCTTTCTAGGCATTTCA 57.364 30.769 0.00 0.00 35.56 2.69
406 407 8.635765 AATACTTGTCTTTCTAGGCATTTCAA 57.364 30.769 0.00 0.00 35.56 2.69
407 408 6.319141 ACTTGTCTTTCTAGGCATTTCAAC 57.681 37.500 0.00 0.00 35.56 3.18
408 409 5.827797 ACTTGTCTTTCTAGGCATTTCAACA 59.172 36.000 0.00 0.00 35.56 3.33
409 410 6.321181 ACTTGTCTTTCTAGGCATTTCAACAA 59.679 34.615 0.00 0.00 35.56 2.83
410 411 6.317789 TGTCTTTCTAGGCATTTCAACAAG 57.682 37.500 0.00 0.00 29.10 3.16
411 412 5.827797 TGTCTTTCTAGGCATTTCAACAAGT 59.172 36.000 0.00 0.00 29.10 3.16
412 413 6.145535 GTCTTTCTAGGCATTTCAACAAGTG 58.854 40.000 0.00 0.00 0.00 3.16
413 414 6.017109 GTCTTTCTAGGCATTTCAACAAGTGA 60.017 38.462 0.00 0.00 0.00 3.41
414 415 5.689383 TTCTAGGCATTTCAACAAGTGAC 57.311 39.130 0.00 0.00 35.39 3.67
415 416 4.973168 TCTAGGCATTTCAACAAGTGACT 58.027 39.130 0.00 0.00 40.60 3.41
416 417 6.109156 TCTAGGCATTTCAACAAGTGACTA 57.891 37.500 0.00 0.00 38.51 2.59
417 418 5.932303 TCTAGGCATTTCAACAAGTGACTAC 59.068 40.000 0.00 0.00 38.51 2.73
418 419 4.460263 AGGCATTTCAACAAGTGACTACA 58.540 39.130 0.00 0.00 35.84 2.74
419 420 5.072741 AGGCATTTCAACAAGTGACTACAT 58.927 37.500 0.00 0.00 35.84 2.29
420 421 6.237901 AGGCATTTCAACAAGTGACTACATA 58.762 36.000 0.00 0.00 35.84 2.29
421 422 6.149474 AGGCATTTCAACAAGTGACTACATAC 59.851 38.462 0.00 0.00 35.84 2.39
422 423 6.015504 GCATTTCAACAAGTGACTACATACG 58.984 40.000 0.00 0.00 35.39 3.06
423 424 6.534059 CATTTCAACAAGTGACTACATACGG 58.466 40.000 0.00 0.00 35.39 4.02
424 425 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
425 426 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
426 427 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
427 428 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
428 429 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
429 430 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
430 431 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
431 432 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
432 433 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
433 434 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
434 435 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
435 436 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
436 437 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
437 438 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
438 439 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
439 440 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
440 441 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
441 442 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
442 443 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
443 444 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
444 445 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
445 446 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
486 487 5.353394 ACATCCGTATGTAGTGGTCATTT 57.647 39.130 0.00 0.00 44.66 2.32
487 488 5.116180 ACATCCGTATGTAGTGGTCATTTG 58.884 41.667 0.00 0.00 44.66 2.32
488 489 5.105106 ACATCCGTATGTAGTGGTCATTTGA 60.105 40.000 0.00 0.00 44.66 2.69
489 490 5.408880 TCCGTATGTAGTGGTCATTTGAA 57.591 39.130 0.00 0.00 0.00 2.69
490 491 5.795972 TCCGTATGTAGTGGTCATTTGAAA 58.204 37.500 0.00 0.00 0.00 2.69
491 492 6.411376 TCCGTATGTAGTGGTCATTTGAAAT 58.589 36.000 0.00 0.00 0.00 2.17
492 493 6.315144 TCCGTATGTAGTGGTCATTTGAAATG 59.685 38.462 11.54 11.54 0.00 2.32
493 494 6.093495 CCGTATGTAGTGGTCATTTGAAATGT 59.907 38.462 16.62 1.00 0.00 2.71
494 495 7.180079 CGTATGTAGTGGTCATTTGAAATGTC 58.820 38.462 16.62 11.53 0.00 3.06
495 496 7.064609 CGTATGTAGTGGTCATTTGAAATGTCT 59.935 37.037 16.62 12.80 0.00 3.41
496 497 9.378551 GTATGTAGTGGTCATTTGAAATGTCTA 57.621 33.333 16.62 7.37 0.00 2.59
497 498 7.905604 TGTAGTGGTCATTTGAAATGTCTAG 57.094 36.000 16.62 0.00 0.00 2.43
498 499 7.676004 TGTAGTGGTCATTTGAAATGTCTAGA 58.324 34.615 16.62 10.93 0.00 2.43
499 500 8.154203 TGTAGTGGTCATTTGAAATGTCTAGAA 58.846 33.333 16.62 0.00 0.00 2.10
500 501 8.999431 GTAGTGGTCATTTGAAATGTCTAGAAA 58.001 33.333 16.62 0.00 0.00 2.52
501 502 8.103948 AGTGGTCATTTGAAATGTCTAGAAAG 57.896 34.615 16.62 0.00 0.00 2.62
502 503 7.939039 AGTGGTCATTTGAAATGTCTAGAAAGA 59.061 33.333 16.62 0.00 0.00 2.52
518 519 8.306680 TCTAGAAAGACAAATGTTTAGGAACG 57.693 34.615 0.00 0.00 38.65 3.95
519 520 6.313744 AGAAAGACAAATGTTTAGGAACGG 57.686 37.500 0.00 0.00 38.65 4.44
520 521 6.059484 AGAAAGACAAATGTTTAGGAACGGA 58.941 36.000 0.00 0.00 38.65 4.69
521 522 5.941948 AAGACAAATGTTTAGGAACGGAG 57.058 39.130 0.00 0.00 38.65 4.63
522 523 4.324267 AGACAAATGTTTAGGAACGGAGG 58.676 43.478 0.00 0.00 38.65 4.30
523 524 3.418047 ACAAATGTTTAGGAACGGAGGG 58.582 45.455 0.00 0.00 38.65 4.30
524 525 3.073356 ACAAATGTTTAGGAACGGAGGGA 59.927 43.478 0.00 0.00 38.65 4.20
525 526 3.629142 AATGTTTAGGAACGGAGGGAG 57.371 47.619 0.00 0.00 38.65 4.30
676 679 1.006922 TCTCGCATGCTCGCATAGG 60.007 57.895 17.13 0.00 34.91 2.57
714 717 2.169789 CCGCGAGCATCCAGTCAAG 61.170 63.158 8.23 0.00 0.00 3.02
724 727 1.379044 CCAGTCAAGCACCATCCCC 60.379 63.158 0.00 0.00 0.00 4.81
725 728 1.379916 CAGTCAAGCACCATCCCCA 59.620 57.895 0.00 0.00 0.00 4.96
726 729 0.679002 CAGTCAAGCACCATCCCCAG 60.679 60.000 0.00 0.00 0.00 4.45
905 909 2.435234 TACTCGCGGCGCCAAAAT 60.435 55.556 28.98 9.93 0.00 1.82
906 910 2.036006 TACTCGCGGCGCCAAAATT 61.036 52.632 28.98 9.79 0.00 1.82
907 911 0.740164 TACTCGCGGCGCCAAAATTA 60.740 50.000 28.98 8.67 0.00 1.40
908 912 1.135731 CTCGCGGCGCCAAAATTAA 59.864 52.632 28.98 2.74 0.00 1.40
909 913 0.455295 CTCGCGGCGCCAAAATTAAA 60.455 50.000 28.98 1.02 0.00 1.52
910 914 0.455295 TCGCGGCGCCAAAATTAAAG 60.455 50.000 28.98 7.61 0.00 1.85
911 915 1.409982 CGCGGCGCCAAAATTAAAGG 61.410 55.000 28.98 6.77 0.00 3.11
912 916 1.692148 GCGGCGCCAAAATTAAAGGC 61.692 55.000 28.98 13.77 44.89 4.35
985 1002 2.752238 AGGAGCACGAGACCCGAG 60.752 66.667 0.00 0.00 41.76 4.63
1014 1031 4.175337 GCCATGGCGGGAGTAGCA 62.175 66.667 23.48 0.00 36.08 3.49
1015 1032 2.109799 CCATGGCGGGAGTAGCAG 59.890 66.667 0.00 0.00 36.08 4.24
1016 1033 2.590007 CATGGCGGGAGTAGCAGC 60.590 66.667 0.00 0.00 36.08 5.25
1484 1505 6.682863 CGTTCCTTGCTTCGTTTATTAATCTG 59.317 38.462 0.00 0.00 0.00 2.90
1529 1550 1.338674 TGGTGCGTAGTTCCATTCCTG 60.339 52.381 0.00 0.00 0.00 3.86
1556 1577 0.971447 AGCTAGGGTCGGTGGAACTC 60.971 60.000 0.00 0.00 36.74 3.01
1693 1714 6.978343 TGGACACATAGTTTGCAAGTATAC 57.022 37.500 0.00 0.00 0.00 1.47
1694 1715 6.468543 TGGACACATAGTTTGCAAGTATACA 58.531 36.000 5.50 0.00 0.00 2.29
1824 1848 5.692115 TGTTAAGGATATGGCTGAGTTGA 57.308 39.130 0.00 0.00 0.00 3.18
1953 1977 5.586339 AGACAGACATCATAGTTCACATCG 58.414 41.667 0.00 0.00 0.00 3.84
1983 2007 8.415950 TCTGTGGTGTGATATTTTTGGTAAAT 57.584 30.769 0.00 0.00 0.00 1.40
2033 2057 6.050432 TGATGTGCAAGAATTTTCAAAAGCT 58.950 32.000 0.00 0.00 0.00 3.74
2041 2065 7.517259 GCAAGAATTTTCAAAAGCTAACAGGTG 60.517 37.037 0.00 0.00 0.00 4.00
2061 2085 9.016438 ACAGGTGTAATTCGTTTGGTAAATATT 57.984 29.630 0.00 0.00 0.00 1.28
2062 2086 9.498307 CAGGTGTAATTCGTTTGGTAAATATTC 57.502 33.333 0.00 0.00 0.00 1.75
2099 2123 1.661341 CTTGCCACATGCTCCTCTAC 58.339 55.000 0.00 0.00 42.00 2.59
2190 2215 7.494952 GCTTATTTGTTCGGTAGGAGAACTATT 59.505 37.037 9.94 3.03 45.84 1.73
2232 2257 6.865411 ACTCTAGCACTTAAGGTAAACTAGC 58.135 40.000 7.53 0.00 31.14 3.42
2233 2258 6.127394 ACTCTAGCACTTAAGGTAAACTAGCC 60.127 42.308 7.53 0.00 31.14 3.93
2234 2259 5.956563 TCTAGCACTTAAGGTAAACTAGCCT 59.043 40.000 7.53 0.00 36.51 4.58
2235 2260 7.121382 TCTAGCACTTAAGGTAAACTAGCCTA 58.879 38.462 7.53 0.00 34.15 3.93
2236 2261 5.975282 AGCACTTAAGGTAAACTAGCCTAC 58.025 41.667 7.53 0.00 34.15 3.18
2270 2295 7.158099 AGTAATCAATTTGGAGTGCTAAACC 57.842 36.000 0.00 0.00 0.00 3.27
2292 2317 1.064166 AGCCATGTGAAATCCCTGGAG 60.064 52.381 0.00 0.00 0.00 3.86
2389 2416 3.131709 AGTTGAGGATATGCCAATCGG 57.868 47.619 0.00 0.00 40.02 4.18
2413 2440 5.342806 TCTTTGTCATTTAACGTGCTCTG 57.657 39.130 0.00 0.00 0.00 3.35
2434 2461 7.308830 GCTCTGAACATCATTAAAACCACTTCT 60.309 37.037 0.00 0.00 0.00 2.85
2495 2522 0.249073 CGGGATGCTGAACTAGTCCG 60.249 60.000 0.00 0.00 0.00 4.79
2502 2529 1.469423 GCTGAACTAGTCCGTGGTAGC 60.469 57.143 0.00 0.00 0.00 3.58
2530 2557 6.951971 ACTCTTCTTATGTGGAATTACAGCT 58.048 36.000 0.00 0.00 33.44 4.24
2785 2812 3.673594 CGTGTACAGGTGTGATTCTCCTC 60.674 52.174 7.41 0.00 37.88 3.71
2854 2881 4.774124 TGTCTATCTTGGCATTTCCTGAG 58.226 43.478 0.00 0.00 35.26 3.35
3040 3072 3.268330 TCGACTAGTTCTGATGTACGCT 58.732 45.455 0.00 0.00 0.00 5.07
3130 3162 4.441079 GGATTGTTTCTGAATCATGGGCAG 60.441 45.833 2.27 0.00 32.34 4.85
3132 3164 1.820519 GTTTCTGAATCATGGGCAGCA 59.179 47.619 0.00 0.00 0.00 4.41
3141 3173 0.825010 CATGGGCAGCATAAGGGGAC 60.825 60.000 0.00 0.00 0.00 4.46
3184 3216 2.746362 CTGCTAAAGCCAGGAAACTCAG 59.254 50.000 0.00 0.00 41.18 3.35
3185 3217 2.371841 TGCTAAAGCCAGGAAACTCAGA 59.628 45.455 0.00 0.00 41.18 3.27
3218 3250 1.744456 AACACGTGTGTGGTTACTGGG 60.744 52.381 24.16 0.00 46.11 4.45
3319 3351 8.684386 TTGGACACTGTTAGATTCATTGTTAA 57.316 30.769 0.00 0.00 30.90 2.01
3334 3366 6.446318 TCATTGTTAAGTTGTGAAATCCAGC 58.554 36.000 0.00 0.00 0.00 4.85
3372 3404 4.921515 CCAATCTGCATGAAACACTCTTTG 59.078 41.667 0.00 0.00 0.00 2.77
3393 3425 5.169992 TGACAATGATGAGATGAACACCT 57.830 39.130 0.00 0.00 0.00 4.00
3464 3497 6.293790 GCTTAAAATGTCCGTCTGGTAAGTTT 60.294 38.462 0.00 0.00 36.30 2.66
3465 3498 7.571080 TTAAAATGTCCGTCTGGTAAGTTTT 57.429 32.000 0.00 0.00 36.30 2.43
3499 3532 2.435059 GCAGACGCACCTCTTCCC 60.435 66.667 0.00 0.00 38.36 3.97
3507 3540 2.204151 ACCTCTTCCCCCACCCAG 60.204 66.667 0.00 0.00 0.00 4.45
3552 3585 7.039363 ACCACAAATATAGCCAGTTTTGCTAAA 60.039 33.333 0.00 0.00 43.96 1.85
3641 3674 1.091771 CGCAGCTGACCGATTCCATT 61.092 55.000 20.43 0.00 0.00 3.16
3725 3758 1.806511 TTACTTCGATCGAGAACGCG 58.193 50.000 18.54 3.53 39.58 6.01
3827 3860 2.359900 CTCACAACCTACCTTGATGCC 58.640 52.381 0.00 0.00 0.00 4.40
3893 3926 0.036952 TCAAGGAAGGAAGCTCGCTG 60.037 55.000 0.00 0.00 0.00 5.18
3906 3939 0.179187 CTCGCTGTCGATATAGGCCG 60.179 60.000 0.00 0.00 44.56 6.13
3994 4027 6.599244 TGCCTATGTTCTTACTTCCTGAATTG 59.401 38.462 0.00 0.00 0.00 2.32
4119 4152 1.068474 GTAAGCCTGTGCACGTACTG 58.932 55.000 13.13 0.00 41.13 2.74
4168 4204 4.278419 ACCTGAAGTTCTTGTACAAATGCC 59.722 41.667 10.03 0.00 0.00 4.40
4326 4364 6.066690 TCCCTTCGCTGTTAGTAGTACATAT 58.933 40.000 2.52 0.00 0.00 1.78
4327 4365 6.016527 TCCCTTCGCTGTTAGTAGTACATATG 60.017 42.308 0.00 0.00 0.00 1.78
4328 4366 6.016527 CCCTTCGCTGTTAGTAGTACATATGA 60.017 42.308 10.38 0.00 0.00 2.15
4394 4439 0.692419 GGAGGGAGGAGGAGATTGCA 60.692 60.000 0.00 0.00 0.00 4.08
4395 4440 1.433121 GAGGGAGGAGGAGATTGCAT 58.567 55.000 0.00 0.00 0.00 3.96
4402 4447 3.957535 GGAGATTGCATGGCGGCG 61.958 66.667 0.51 0.51 36.28 6.46
4471 4516 0.912968 AGGCGGCTAGGGTTTAGGTT 60.913 55.000 11.03 0.00 0.00 3.50
4487 4532 1.269703 GGTTTCCCGGCTCCCTAAGA 61.270 60.000 0.00 0.00 0.00 2.10
4488 4533 0.616891 GTTTCCCGGCTCCCTAAGAA 59.383 55.000 0.00 0.00 0.00 2.52
4493 4538 0.253327 CCGGCTCCCTAAGAAAAGCT 59.747 55.000 0.00 0.00 35.12 3.74
4496 4541 2.615493 CGGCTCCCTAAGAAAAGCTGAA 60.615 50.000 0.00 0.00 42.49 3.02
4505 4550 9.747898 TCCCTAAGAAAAGCTGAACAAATATTA 57.252 29.630 0.00 0.00 0.00 0.98
4538 4583 9.842775 TCTTGCTTGATTAGATTGATACATCTT 57.157 29.630 0.00 0.00 0.00 2.40
4540 4585 8.302965 TGCTTGATTAGATTGATACATCTTCG 57.697 34.615 0.00 0.00 0.00 3.79
4574 4619 8.896722 ATAGAGAGGTTTACTTGACTCCTAAA 57.103 34.615 0.00 0.00 0.00 1.85
4580 4625 7.114095 AGGTTTACTTGACTCCTAAACAAACA 58.886 34.615 0.00 0.00 33.71 2.83
4672 6846 2.087646 GCTAAGCCCCTAATATGCTGC 58.912 52.381 0.00 0.00 35.08 5.25
4684 6858 6.432162 CCCTAATATGCTGCTCATAACAACAT 59.568 38.462 0.00 0.00 40.73 2.71
4685 6859 7.607607 CCCTAATATGCTGCTCATAACAACATA 59.392 37.037 0.00 0.00 40.73 2.29
4733 6908 2.489938 ACATGGTTGCTGGTATTCGT 57.510 45.000 0.00 0.00 0.00 3.85
4818 7007 4.109675 CCGTGACCCCATGACCCC 62.110 72.222 0.00 0.00 0.00 4.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.929903 TTTTGATGGTGGCAGCGGC 61.930 57.895 12.58 0.00 40.13 6.53
1 2 1.080569 GTTTTGATGGTGGCAGCGG 60.081 57.895 12.58 0.00 0.00 5.52
2 3 0.664166 GTGTTTTGATGGTGGCAGCG 60.664 55.000 12.58 0.00 0.00 5.18
4 5 0.039256 CGGTGTTTTGATGGTGGCAG 60.039 55.000 0.00 0.00 0.00 4.85
5 6 0.466372 TCGGTGTTTTGATGGTGGCA 60.466 50.000 0.00 0.00 0.00 4.92
6 7 0.039527 GTCGGTGTTTTGATGGTGGC 60.040 55.000 0.00 0.00 0.00 5.01
7 8 1.001815 GTGTCGGTGTTTTGATGGTGG 60.002 52.381 0.00 0.00 0.00 4.61
8 9 1.001815 GGTGTCGGTGTTTTGATGGTG 60.002 52.381 0.00 0.00 0.00 4.17
9 10 1.133915 AGGTGTCGGTGTTTTGATGGT 60.134 47.619 0.00 0.00 0.00 3.55
10 11 1.604604 AGGTGTCGGTGTTTTGATGG 58.395 50.000 0.00 0.00 0.00 3.51
11 12 4.822036 TTTAGGTGTCGGTGTTTTGATG 57.178 40.909 0.00 0.00 0.00 3.07
12 13 4.260866 CGTTTTAGGTGTCGGTGTTTTGAT 60.261 41.667 0.00 0.00 0.00 2.57
13 14 3.063725 CGTTTTAGGTGTCGGTGTTTTGA 59.936 43.478 0.00 0.00 0.00 2.69
14 15 3.181508 ACGTTTTAGGTGTCGGTGTTTTG 60.182 43.478 0.00 0.00 0.00 2.44
15 16 3.009026 ACGTTTTAGGTGTCGGTGTTTT 58.991 40.909 0.00 0.00 0.00 2.43
16 17 2.631267 ACGTTTTAGGTGTCGGTGTTT 58.369 42.857 0.00 0.00 0.00 2.83
17 18 2.314323 ACGTTTTAGGTGTCGGTGTT 57.686 45.000 0.00 0.00 0.00 3.32
18 19 2.314323 AACGTTTTAGGTGTCGGTGT 57.686 45.000 0.00 0.00 0.00 4.16
19 20 3.368843 GGATAACGTTTTAGGTGTCGGTG 59.631 47.826 5.91 0.00 0.00 4.94
20 21 3.588955 GGATAACGTTTTAGGTGTCGGT 58.411 45.455 5.91 0.00 0.00 4.69
21 22 2.931969 GGGATAACGTTTTAGGTGTCGG 59.068 50.000 5.91 0.00 0.00 4.79
22 23 3.853475 AGGGATAACGTTTTAGGTGTCG 58.147 45.455 5.91 0.00 0.00 4.35
23 24 5.970592 ACTAGGGATAACGTTTTAGGTGTC 58.029 41.667 5.91 0.00 0.00 3.67
24 25 7.124750 ACATACTAGGGATAACGTTTTAGGTGT 59.875 37.037 5.91 8.04 0.00 4.16
25 26 7.495055 ACATACTAGGGATAACGTTTTAGGTG 58.505 38.462 5.91 7.53 0.00 4.00
26 27 7.666063 ACATACTAGGGATAACGTTTTAGGT 57.334 36.000 5.91 0.00 0.00 3.08
27 28 8.632679 TGTACATACTAGGGATAACGTTTTAGG 58.367 37.037 5.91 0.00 0.00 2.69
28 29 9.674824 CTGTACATACTAGGGATAACGTTTTAG 57.325 37.037 5.91 4.27 0.00 1.85
29 30 9.407380 TCTGTACATACTAGGGATAACGTTTTA 57.593 33.333 5.91 0.00 0.00 1.52
30 31 8.193438 GTCTGTACATACTAGGGATAACGTTTT 58.807 37.037 5.91 0.00 0.00 2.43
31 32 7.340232 TGTCTGTACATACTAGGGATAACGTTT 59.660 37.037 5.91 0.00 0.00 3.60
32 33 6.830324 TGTCTGTACATACTAGGGATAACGTT 59.170 38.462 5.88 5.88 0.00 3.99
33 34 6.359804 TGTCTGTACATACTAGGGATAACGT 58.640 40.000 12.09 0.00 0.00 3.99
34 35 6.709397 TCTGTCTGTACATACTAGGGATAACG 59.291 42.308 12.09 0.00 34.37 3.18
35 36 7.175293 CCTCTGTCTGTACATACTAGGGATAAC 59.825 44.444 17.95 0.00 34.37 1.89
36 37 7.232188 CCTCTGTCTGTACATACTAGGGATAA 58.768 42.308 17.95 0.00 34.37 1.75
37 38 6.240205 CCCTCTGTCTGTACATACTAGGGATA 60.240 46.154 29.12 9.67 40.43 2.59
38 39 5.458362 CCCTCTGTCTGTACATACTAGGGAT 60.458 48.000 29.12 0.00 40.43 3.85
39 40 4.141228 CCCTCTGTCTGTACATACTAGGGA 60.141 50.000 29.12 15.53 40.43 4.20
40 41 4.145807 CCCTCTGTCTGTACATACTAGGG 58.854 52.174 24.64 24.64 36.13 3.53
41 42 3.570550 GCCCTCTGTCTGTACATACTAGG 59.429 52.174 18.42 18.42 34.37 3.02
42 43 4.036971 GTGCCCTCTGTCTGTACATACTAG 59.963 50.000 12.09 9.27 34.37 2.57
43 44 3.952323 GTGCCCTCTGTCTGTACATACTA 59.048 47.826 12.09 1.05 34.37 1.82
44 45 2.761208 GTGCCCTCTGTCTGTACATACT 59.239 50.000 12.09 0.00 34.37 2.12
45 46 2.496070 TGTGCCCTCTGTCTGTACATAC 59.504 50.000 4.50 4.50 34.37 2.39
46 47 2.815158 TGTGCCCTCTGTCTGTACATA 58.185 47.619 0.00 0.00 34.37 2.29
47 48 1.644509 TGTGCCCTCTGTCTGTACAT 58.355 50.000 0.00 0.00 34.37 2.29
48 49 1.419381 TTGTGCCCTCTGTCTGTACA 58.581 50.000 0.00 0.00 0.00 2.90
49 50 2.543777 TTTGTGCCCTCTGTCTGTAC 57.456 50.000 0.00 0.00 0.00 2.90
50 51 3.072330 TGAATTTGTGCCCTCTGTCTGTA 59.928 43.478 0.00 0.00 0.00 2.74
51 52 2.158623 TGAATTTGTGCCCTCTGTCTGT 60.159 45.455 0.00 0.00 0.00 3.41
52 53 2.486982 CTGAATTTGTGCCCTCTGTCTG 59.513 50.000 0.00 0.00 0.00 3.51
53 54 2.553904 CCTGAATTTGTGCCCTCTGTCT 60.554 50.000 0.00 0.00 0.00 3.41
54 55 1.815003 CCTGAATTTGTGCCCTCTGTC 59.185 52.381 0.00 0.00 0.00 3.51
55 56 1.548582 CCCTGAATTTGTGCCCTCTGT 60.549 52.381 0.00 0.00 0.00 3.41
56 57 1.180029 CCCTGAATTTGTGCCCTCTG 58.820 55.000 0.00 0.00 0.00 3.35
57 58 0.613012 GCCCTGAATTTGTGCCCTCT 60.613 55.000 0.00 0.00 0.00 3.69
58 59 0.613012 AGCCCTGAATTTGTGCCCTC 60.613 55.000 0.00 0.00 0.00 4.30
59 60 0.613012 GAGCCCTGAATTTGTGCCCT 60.613 55.000 0.00 0.00 0.00 5.19
60 61 0.613012 AGAGCCCTGAATTTGTGCCC 60.613 55.000 0.00 0.00 0.00 5.36
61 62 0.813821 GAGAGCCCTGAATTTGTGCC 59.186 55.000 0.00 0.00 0.00 5.01
62 63 0.813821 GGAGAGCCCTGAATTTGTGC 59.186 55.000 0.00 0.00 0.00 4.57
63 64 2.205022 TGGAGAGCCCTGAATTTGTG 57.795 50.000 0.00 0.00 35.38 3.33
64 65 2.108952 AGTTGGAGAGCCCTGAATTTGT 59.891 45.455 0.00 0.00 35.38 2.83
65 66 2.751806 GAGTTGGAGAGCCCTGAATTTG 59.248 50.000 0.00 0.00 35.38 2.32
66 67 2.646798 AGAGTTGGAGAGCCCTGAATTT 59.353 45.455 0.00 0.00 35.38 1.82
67 68 2.238395 GAGAGTTGGAGAGCCCTGAATT 59.762 50.000 0.00 0.00 35.38 2.17
68 69 1.836802 GAGAGTTGGAGAGCCCTGAAT 59.163 52.381 0.00 0.00 35.38 2.57
69 70 1.270907 GAGAGTTGGAGAGCCCTGAA 58.729 55.000 0.00 0.00 35.38 3.02
70 71 0.616111 GGAGAGTTGGAGAGCCCTGA 60.616 60.000 0.00 0.00 35.38 3.86
71 72 1.621672 GGGAGAGTTGGAGAGCCCTG 61.622 65.000 0.00 0.00 35.38 4.45
72 73 1.306568 GGGAGAGTTGGAGAGCCCT 60.307 63.158 0.00 0.00 35.38 5.19
73 74 1.613630 TGGGAGAGTTGGAGAGCCC 60.614 63.158 0.00 0.00 36.11 5.19
74 75 1.599576 GTGGGAGAGTTGGAGAGCC 59.400 63.158 0.00 0.00 0.00 4.70
75 76 1.599576 GGTGGGAGAGTTGGAGAGC 59.400 63.158 0.00 0.00 0.00 4.09
76 77 1.893786 CGGTGGGAGAGTTGGAGAG 59.106 63.158 0.00 0.00 0.00 3.20
77 78 2.283529 GCGGTGGGAGAGTTGGAGA 61.284 63.158 0.00 0.00 0.00 3.71
78 79 2.266055 GCGGTGGGAGAGTTGGAG 59.734 66.667 0.00 0.00 0.00 3.86
79 80 3.319198 GGCGGTGGGAGAGTTGGA 61.319 66.667 0.00 0.00 0.00 3.53
80 81 4.760047 CGGCGGTGGGAGAGTTGG 62.760 72.222 0.00 0.00 0.00 3.77
140 141 1.674651 GAAGTTCCCTCGGTTGGCC 60.675 63.158 0.00 0.00 0.00 5.36
141 142 0.673956 GAGAAGTTCCCTCGGTTGGC 60.674 60.000 0.00 0.00 0.00 4.52
142 143 0.977395 AGAGAAGTTCCCTCGGTTGG 59.023 55.000 0.00 0.00 35.88 3.77
143 144 1.941668 GCAGAGAAGTTCCCTCGGTTG 60.942 57.143 0.00 0.00 35.88 3.77
144 145 0.321996 GCAGAGAAGTTCCCTCGGTT 59.678 55.000 0.00 0.00 35.88 4.44
145 146 0.832135 TGCAGAGAAGTTCCCTCGGT 60.832 55.000 0.00 0.00 35.88 4.69
146 147 0.539051 ATGCAGAGAAGTTCCCTCGG 59.461 55.000 0.00 0.00 35.88 4.63
147 148 2.275318 GAATGCAGAGAAGTTCCCTCG 58.725 52.381 0.00 0.00 35.88 4.63
148 149 2.238395 AGGAATGCAGAGAAGTTCCCTC 59.762 50.000 10.25 0.00 40.75 4.30
149 150 2.273619 AGGAATGCAGAGAAGTTCCCT 58.726 47.619 10.25 0.00 40.75 4.20
150 151 2.797177 AGGAATGCAGAGAAGTTCCC 57.203 50.000 10.25 0.00 40.75 3.97
151 152 3.126000 CGAAAGGAATGCAGAGAAGTTCC 59.874 47.826 6.42 6.42 40.28 3.62
152 153 3.425492 GCGAAAGGAATGCAGAGAAGTTC 60.425 47.826 0.00 0.00 0.00 3.01
153 154 2.485814 GCGAAAGGAATGCAGAGAAGTT 59.514 45.455 0.00 0.00 0.00 2.66
154 155 2.079925 GCGAAAGGAATGCAGAGAAGT 58.920 47.619 0.00 0.00 0.00 3.01
155 156 1.399791 GGCGAAAGGAATGCAGAGAAG 59.600 52.381 0.00 0.00 0.00 2.85
156 157 1.003580 AGGCGAAAGGAATGCAGAGAA 59.996 47.619 0.00 0.00 0.00 2.87
157 158 0.615331 AGGCGAAAGGAATGCAGAGA 59.385 50.000 0.00 0.00 0.00 3.10
158 159 1.012841 GAGGCGAAAGGAATGCAGAG 58.987 55.000 0.00 0.00 0.00 3.35
159 160 0.615331 AGAGGCGAAAGGAATGCAGA 59.385 50.000 0.00 0.00 0.00 4.26
160 161 1.131883 CAAGAGGCGAAAGGAATGCAG 59.868 52.381 0.00 0.00 0.00 4.41
161 162 1.167851 CAAGAGGCGAAAGGAATGCA 58.832 50.000 0.00 0.00 0.00 3.96
162 163 0.179153 GCAAGAGGCGAAAGGAATGC 60.179 55.000 0.00 0.00 0.00 3.56
180 181 3.824510 GTCGCGGTTCGTTCTCGC 61.825 66.667 6.13 0.00 45.15 5.03
181 182 2.126965 AGTCGCGGTTCGTTCTCG 60.127 61.111 6.13 0.00 39.67 4.04
182 183 1.371389 ACAGTCGCGGTTCGTTCTC 60.371 57.895 6.13 0.00 39.67 2.87
183 184 1.660575 CACAGTCGCGGTTCGTTCT 60.661 57.895 6.13 0.00 39.67 3.01
184 185 1.210545 TTCACAGTCGCGGTTCGTTC 61.211 55.000 6.13 0.00 39.67 3.95
185 186 0.806884 TTTCACAGTCGCGGTTCGTT 60.807 50.000 6.13 0.00 39.67 3.85
186 187 1.213094 CTTTCACAGTCGCGGTTCGT 61.213 55.000 6.13 0.00 39.67 3.85
187 188 0.937699 TCTTTCACAGTCGCGGTTCG 60.938 55.000 6.13 0.00 40.15 3.95
188 189 1.214367 TTCTTTCACAGTCGCGGTTC 58.786 50.000 6.13 0.00 0.00 3.62
189 190 1.658994 TTTCTTTCACAGTCGCGGTT 58.341 45.000 6.13 0.00 0.00 4.44
190 191 1.597663 CTTTTCTTTCACAGTCGCGGT 59.402 47.619 6.13 0.00 0.00 5.68
191 192 1.660333 GCTTTTCTTTCACAGTCGCGG 60.660 52.381 6.13 0.00 0.00 6.46
192 193 1.003972 TGCTTTTCTTTCACAGTCGCG 60.004 47.619 0.00 0.00 0.00 5.87
193 194 2.755836 TGCTTTTCTTTCACAGTCGC 57.244 45.000 0.00 0.00 0.00 5.19
194 195 3.029074 CGTTGCTTTTCTTTCACAGTCG 58.971 45.455 0.00 0.00 0.00 4.18
195 196 2.783832 GCGTTGCTTTTCTTTCACAGTC 59.216 45.455 0.00 0.00 0.00 3.51
196 197 2.163412 TGCGTTGCTTTTCTTTCACAGT 59.837 40.909 0.00 0.00 0.00 3.55
197 198 2.531508 GTGCGTTGCTTTTCTTTCACAG 59.468 45.455 0.00 0.00 0.00 3.66
198 199 2.525055 GTGCGTTGCTTTTCTTTCACA 58.475 42.857 0.00 0.00 0.00 3.58
199 200 1.512771 CGTGCGTTGCTTTTCTTTCAC 59.487 47.619 0.00 0.00 0.00 3.18
200 201 1.131504 ACGTGCGTTGCTTTTCTTTCA 59.868 42.857 0.00 0.00 0.00 2.69
201 202 1.773525 GACGTGCGTTGCTTTTCTTTC 59.226 47.619 0.00 0.00 0.00 2.62
202 203 1.400494 AGACGTGCGTTGCTTTTCTTT 59.600 42.857 0.00 0.00 0.00 2.52
203 204 1.014352 AGACGTGCGTTGCTTTTCTT 58.986 45.000 0.00 0.00 0.00 2.52
204 205 0.304705 CAGACGTGCGTTGCTTTTCT 59.695 50.000 0.00 0.00 0.00 2.52
205 206 1.262166 GCAGACGTGCGTTGCTTTTC 61.262 55.000 17.62 0.00 40.71 2.29
206 207 1.298339 GCAGACGTGCGTTGCTTTT 60.298 52.632 17.62 0.00 40.71 2.27
207 208 2.327940 GCAGACGTGCGTTGCTTT 59.672 55.556 17.62 0.00 40.71 3.51
216 217 4.801147 ATGCAATGTAATAGCAGACGTG 57.199 40.909 0.00 0.00 42.14 4.49
217 218 5.118990 AGAATGCAATGTAATAGCAGACGT 58.881 37.500 0.00 0.00 42.14 4.34
218 219 5.663795 AGAATGCAATGTAATAGCAGACG 57.336 39.130 0.00 0.00 42.14 4.18
219 220 9.787532 TTTAAAGAATGCAATGTAATAGCAGAC 57.212 29.630 0.00 0.00 42.14 3.51
268 269 8.192110 GCCCAACTTAATTTAAAATATCGGTGA 58.808 33.333 0.00 0.00 0.00 4.02
269 270 7.976734 TGCCCAACTTAATTTAAAATATCGGTG 59.023 33.333 0.00 0.00 0.00 4.94
270 271 8.068892 TGCCCAACTTAATTTAAAATATCGGT 57.931 30.769 0.00 0.00 0.00 4.69
271 272 8.977505 CATGCCCAACTTAATTTAAAATATCGG 58.022 33.333 0.00 0.00 0.00 4.18
272 273 8.977505 CCATGCCCAACTTAATTTAAAATATCG 58.022 33.333 0.00 0.00 0.00 2.92
273 274 8.773645 GCCATGCCCAACTTAATTTAAAATATC 58.226 33.333 0.00 0.00 0.00 1.63
274 275 8.270744 TGCCATGCCCAACTTAATTTAAAATAT 58.729 29.630 0.00 0.00 0.00 1.28
275 276 7.624549 TGCCATGCCCAACTTAATTTAAAATA 58.375 30.769 0.00 0.00 0.00 1.40
276 277 6.479884 TGCCATGCCCAACTTAATTTAAAAT 58.520 32.000 0.00 0.00 0.00 1.82
277 278 5.869579 TGCCATGCCCAACTTAATTTAAAA 58.130 33.333 0.00 0.00 0.00 1.52
278 279 5.247110 TCTGCCATGCCCAACTTAATTTAAA 59.753 36.000 0.00 0.00 0.00 1.52
279 280 4.774726 TCTGCCATGCCCAACTTAATTTAA 59.225 37.500 0.00 0.00 0.00 1.52
280 281 4.348486 TCTGCCATGCCCAACTTAATTTA 58.652 39.130 0.00 0.00 0.00 1.40
281 282 3.172339 TCTGCCATGCCCAACTTAATTT 58.828 40.909 0.00 0.00 0.00 1.82
282 283 2.762327 CTCTGCCATGCCCAACTTAATT 59.238 45.455 0.00 0.00 0.00 1.40
283 284 2.291800 ACTCTGCCATGCCCAACTTAAT 60.292 45.455 0.00 0.00 0.00 1.40
284 285 1.075374 ACTCTGCCATGCCCAACTTAA 59.925 47.619 0.00 0.00 0.00 1.85
285 286 0.698238 ACTCTGCCATGCCCAACTTA 59.302 50.000 0.00 0.00 0.00 2.24
286 287 0.610232 GACTCTGCCATGCCCAACTT 60.610 55.000 0.00 0.00 0.00 2.66
287 288 1.001641 GACTCTGCCATGCCCAACT 60.002 57.895 0.00 0.00 0.00 3.16
288 289 0.895100 TTGACTCTGCCATGCCCAAC 60.895 55.000 0.00 0.00 0.00 3.77
289 290 0.609957 CTTGACTCTGCCATGCCCAA 60.610 55.000 0.00 0.00 0.00 4.12
290 291 1.001764 CTTGACTCTGCCATGCCCA 60.002 57.895 0.00 0.00 0.00 5.36
291 292 2.413142 GCTTGACTCTGCCATGCCC 61.413 63.158 0.00 0.00 0.00 5.36
292 293 1.246056 TTGCTTGACTCTGCCATGCC 61.246 55.000 0.00 0.00 34.86 4.40
293 294 0.109412 GTTGCTTGACTCTGCCATGC 60.109 55.000 0.00 0.00 35.88 4.06
294 295 0.524862 GGTTGCTTGACTCTGCCATG 59.475 55.000 0.00 0.00 0.00 3.66
295 296 0.403271 AGGTTGCTTGACTCTGCCAT 59.597 50.000 0.00 0.00 0.00 4.40
296 297 0.250467 GAGGTTGCTTGACTCTGCCA 60.250 55.000 0.00 0.00 0.00 4.92
297 298 0.250467 TGAGGTTGCTTGACTCTGCC 60.250 55.000 0.00 0.00 32.58 4.85
298 299 1.597742 TTGAGGTTGCTTGACTCTGC 58.402 50.000 0.00 0.00 32.58 4.26
299 300 3.629398 AGTTTTGAGGTTGCTTGACTCTG 59.371 43.478 0.00 0.00 32.58 3.35
300 301 3.891049 AGTTTTGAGGTTGCTTGACTCT 58.109 40.909 0.00 0.00 32.58 3.24
301 302 5.278022 CCTTAGTTTTGAGGTTGCTTGACTC 60.278 44.000 0.00 0.00 0.00 3.36
302 303 4.580580 CCTTAGTTTTGAGGTTGCTTGACT 59.419 41.667 0.00 0.00 0.00 3.41
303 304 4.578928 TCCTTAGTTTTGAGGTTGCTTGAC 59.421 41.667 0.00 0.00 34.57 3.18
304 305 4.787551 TCCTTAGTTTTGAGGTTGCTTGA 58.212 39.130 0.00 0.00 34.57 3.02
305 306 5.514274 TTCCTTAGTTTTGAGGTTGCTTG 57.486 39.130 0.00 0.00 34.57 4.01
306 307 6.538945 TTTTCCTTAGTTTTGAGGTTGCTT 57.461 33.333 0.00 0.00 34.57 3.91
307 308 6.071051 TGTTTTTCCTTAGTTTTGAGGTTGCT 60.071 34.615 0.00 0.00 34.57 3.91
308 309 6.103330 TGTTTTTCCTTAGTTTTGAGGTTGC 58.897 36.000 0.00 0.00 34.57 4.17
309 310 8.716646 ATTGTTTTTCCTTAGTTTTGAGGTTG 57.283 30.769 0.00 0.00 34.57 3.77
352 353 9.955102 GGAACGGAGGGAGTATTTATTATTATT 57.045 33.333 0.00 0.00 0.00 1.40
353 354 9.335211 AGGAACGGAGGGAGTATTTATTATTAT 57.665 33.333 0.00 0.00 0.00 1.28
354 355 8.731591 AGGAACGGAGGGAGTATTTATTATTA 57.268 34.615 0.00 0.00 0.00 0.98
355 356 7.628501 AGGAACGGAGGGAGTATTTATTATT 57.371 36.000 0.00 0.00 0.00 1.40
356 357 8.731591 TTAGGAACGGAGGGAGTATTTATTAT 57.268 34.615 0.00 0.00 0.00 1.28
357 358 8.551682 TTTAGGAACGGAGGGAGTATTTATTA 57.448 34.615 0.00 0.00 0.00 0.98
358 359 7.441903 TTTAGGAACGGAGGGAGTATTTATT 57.558 36.000 0.00 0.00 0.00 1.40
359 360 7.628501 ATTTAGGAACGGAGGGAGTATTTAT 57.371 36.000 0.00 0.00 0.00 1.40
360 361 7.786464 AGTATTTAGGAACGGAGGGAGTATTTA 59.214 37.037 0.00 0.00 0.00 1.40
361 362 5.970501 ATTTAGGAACGGAGGGAGTATTT 57.029 39.130 0.00 0.00 0.00 1.40
362 363 6.141790 AGTATTTAGGAACGGAGGGAGTATT 58.858 40.000 0.00 0.00 0.00 1.89
363 364 5.713807 AGTATTTAGGAACGGAGGGAGTAT 58.286 41.667 0.00 0.00 0.00 2.12
364 365 5.134725 AGTATTTAGGAACGGAGGGAGTA 57.865 43.478 0.00 0.00 0.00 2.59
365 366 3.991683 AGTATTTAGGAACGGAGGGAGT 58.008 45.455 0.00 0.00 0.00 3.85
366 367 4.161754 ACAAGTATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
367 368 4.098894 ACAAGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
368 369 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
369 370 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
370 371 7.097834 AGAAAGACAAGTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
371 372 7.001099 AGAAAGACAAGTATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
372 373 7.491696 CCTAGAAAGACAAGTATTTAGGAACGG 59.508 40.741 4.01 0.00 26.70 4.44
373 374 7.010275 GCCTAGAAAGACAAGTATTTAGGAACG 59.990 40.741 11.40 0.00 26.70 3.95
374 375 7.822822 TGCCTAGAAAGACAAGTATTTAGGAAC 59.177 37.037 11.40 0.00 26.70 3.62
375 376 7.913789 TGCCTAGAAAGACAAGTATTTAGGAA 58.086 34.615 11.40 1.02 26.70 3.36
376 377 7.490657 TGCCTAGAAAGACAAGTATTTAGGA 57.509 36.000 11.40 0.00 26.70 2.94
377 378 8.738645 AATGCCTAGAAAGACAAGTATTTAGG 57.261 34.615 5.26 5.26 0.00 2.69
379 380 9.733556 TGAAATGCCTAGAAAGACAAGTATTTA 57.266 29.630 0.00 0.00 0.00 1.40
380 381 8.635765 TGAAATGCCTAGAAAGACAAGTATTT 57.364 30.769 0.00 0.00 0.00 1.40
381 382 8.515414 GTTGAAATGCCTAGAAAGACAAGTATT 58.485 33.333 0.00 0.00 0.00 1.89
382 383 7.665559 TGTTGAAATGCCTAGAAAGACAAGTAT 59.334 33.333 0.00 0.00 0.00 2.12
383 384 6.995686 TGTTGAAATGCCTAGAAAGACAAGTA 59.004 34.615 0.00 0.00 0.00 2.24
384 385 5.827797 TGTTGAAATGCCTAGAAAGACAAGT 59.172 36.000 0.00 0.00 0.00 3.16
385 386 6.317789 TGTTGAAATGCCTAGAAAGACAAG 57.682 37.500 0.00 0.00 0.00 3.16
386 387 6.321181 ACTTGTTGAAATGCCTAGAAAGACAA 59.679 34.615 0.00 0.00 0.00 3.18
387 388 5.827797 ACTTGTTGAAATGCCTAGAAAGACA 59.172 36.000 0.00 0.00 0.00 3.41
388 389 6.017109 TCACTTGTTGAAATGCCTAGAAAGAC 60.017 38.462 0.00 0.00 0.00 3.01
389 390 6.017109 GTCACTTGTTGAAATGCCTAGAAAGA 60.017 38.462 0.00 0.00 35.39 2.52
390 391 6.016777 AGTCACTTGTTGAAATGCCTAGAAAG 60.017 38.462 0.00 0.00 35.39 2.62
391 392 5.827797 AGTCACTTGTTGAAATGCCTAGAAA 59.172 36.000 0.00 0.00 35.39 2.52
392 393 5.376625 AGTCACTTGTTGAAATGCCTAGAA 58.623 37.500 0.00 0.00 35.39 2.10
393 394 4.973168 AGTCACTTGTTGAAATGCCTAGA 58.027 39.130 0.00 0.00 35.39 2.43
394 395 5.700832 TGTAGTCACTTGTTGAAATGCCTAG 59.299 40.000 0.00 0.00 35.39 3.02
395 396 5.616270 TGTAGTCACTTGTTGAAATGCCTA 58.384 37.500 0.00 0.00 35.39 3.93
396 397 4.460263 TGTAGTCACTTGTTGAAATGCCT 58.540 39.130 0.00 0.00 35.39 4.75
397 398 4.829064 TGTAGTCACTTGTTGAAATGCC 57.171 40.909 0.00 0.00 35.39 4.40
398 399 6.015504 CGTATGTAGTCACTTGTTGAAATGC 58.984 40.000 0.00 0.00 35.39 3.56
399 400 6.367695 TCCGTATGTAGTCACTTGTTGAAATG 59.632 38.462 0.00 0.00 35.39 2.32
400 401 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
401 402 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
402 403 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
403 404 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
404 405 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
405 406 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
406 407 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
407 408 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
408 409 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
409 410 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
410 411 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
411 412 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
412 413 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
413 414 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
414 415 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
415 416 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
416 417 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
417 418 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
418 419 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
419 420 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
420 421 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
421 422 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
422 423 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
423 424 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
454 455 9.121658 CCACTACATACGGATGTATATAGACAT 57.878 37.037 20.64 12.70 45.42 3.06
455 456 8.105197 ACCACTACATACGGATGTATATAGACA 58.895 37.037 20.64 2.07 45.42 3.41
456 457 8.503458 ACCACTACATACGGATGTATATAGAC 57.497 38.462 20.64 0.00 45.42 2.59
457 458 8.323567 TGACCACTACATACGGATGTATATAGA 58.676 37.037 20.64 0.00 45.42 1.98
458 459 8.502105 TGACCACTACATACGGATGTATATAG 57.498 38.462 20.64 13.28 45.42 1.31
459 460 9.470399 AATGACCACTACATACGGATGTATATA 57.530 33.333 20.64 0.52 45.42 0.86
460 461 7.956328 ATGACCACTACATACGGATGTATAT 57.044 36.000 20.64 9.64 45.42 0.86
461 462 7.770366 AATGACCACTACATACGGATGTATA 57.230 36.000 20.64 1.71 45.42 1.47
462 463 6.665992 AATGACCACTACATACGGATGTAT 57.334 37.500 20.64 6.13 45.42 2.29
463 464 6.097129 TCAAATGACCACTACATACGGATGTA 59.903 38.462 19.32 19.32 44.77 2.29
465 466 5.356426 TCAAATGACCACTACATACGGATG 58.644 41.667 5.94 5.94 39.16 3.51
466 467 5.607939 TCAAATGACCACTACATACGGAT 57.392 39.130 0.00 0.00 0.00 4.18
467 468 5.408880 TTCAAATGACCACTACATACGGA 57.591 39.130 0.00 0.00 0.00 4.69
468 469 6.093495 ACATTTCAAATGACCACTACATACGG 59.907 38.462 17.30 0.00 0.00 4.02
469 470 7.064609 AGACATTTCAAATGACCACTACATACG 59.935 37.037 17.30 0.00 0.00 3.06
470 471 8.268850 AGACATTTCAAATGACCACTACATAC 57.731 34.615 17.30 0.00 0.00 2.39
471 472 9.599866 CTAGACATTTCAAATGACCACTACATA 57.400 33.333 17.30 0.00 0.00 2.29
472 473 8.321353 TCTAGACATTTCAAATGACCACTACAT 58.679 33.333 17.30 0.00 0.00 2.29
473 474 7.676004 TCTAGACATTTCAAATGACCACTACA 58.324 34.615 17.30 1.13 0.00 2.74
474 475 8.547967 TTCTAGACATTTCAAATGACCACTAC 57.452 34.615 17.30 0.12 0.00 2.73
475 476 9.219603 CTTTCTAGACATTTCAAATGACCACTA 57.780 33.333 17.30 12.04 0.00 2.74
476 477 7.939039 TCTTTCTAGACATTTCAAATGACCACT 59.061 33.333 17.30 11.61 0.00 4.00
477 478 8.099364 TCTTTCTAGACATTTCAAATGACCAC 57.901 34.615 17.30 5.42 0.00 4.16
491 492 9.052759 GTTCCTAAACATTTGTCTTTCTAGACA 57.947 33.333 3.99 3.99 44.99 3.41
492 493 8.221766 CGTTCCTAAACATTTGTCTTTCTAGAC 58.778 37.037 0.00 0.00 41.96 2.59
493 494 7.386848 CCGTTCCTAAACATTTGTCTTTCTAGA 59.613 37.037 0.00 0.00 34.93 2.43
494 495 7.386848 TCCGTTCCTAAACATTTGTCTTTCTAG 59.613 37.037 0.00 0.00 34.93 2.43
495 496 7.218614 TCCGTTCCTAAACATTTGTCTTTCTA 58.781 34.615 0.00 0.00 34.93 2.10
496 497 6.059484 TCCGTTCCTAAACATTTGTCTTTCT 58.941 36.000 0.00 0.00 34.93 2.52
497 498 6.308371 TCCGTTCCTAAACATTTGTCTTTC 57.692 37.500 0.00 0.00 34.93 2.62
498 499 5.240844 CCTCCGTTCCTAAACATTTGTCTTT 59.759 40.000 0.00 0.00 34.93 2.52
499 500 4.760204 CCTCCGTTCCTAAACATTTGTCTT 59.240 41.667 0.00 0.00 34.93 3.01
500 501 4.324267 CCTCCGTTCCTAAACATTTGTCT 58.676 43.478 0.00 0.00 34.93 3.41
501 502 3.439129 CCCTCCGTTCCTAAACATTTGTC 59.561 47.826 0.00 0.00 34.93 3.18
502 503 3.073356 TCCCTCCGTTCCTAAACATTTGT 59.927 43.478 0.00 0.00 34.93 2.83
503 504 3.681593 TCCCTCCGTTCCTAAACATTTG 58.318 45.455 0.00 0.00 34.93 2.32
504 505 3.329814 ACTCCCTCCGTTCCTAAACATTT 59.670 43.478 0.00 0.00 34.93 2.32
505 506 2.910977 ACTCCCTCCGTTCCTAAACATT 59.089 45.455 0.00 0.00 34.93 2.71
506 507 2.547990 ACTCCCTCCGTTCCTAAACAT 58.452 47.619 0.00 0.00 34.93 2.71
507 508 2.019807 ACTCCCTCCGTTCCTAAACA 57.980 50.000 0.00 0.00 34.93 2.83
508 509 2.167281 GGTACTCCCTCCGTTCCTAAAC 59.833 54.545 0.00 0.00 0.00 2.01
509 510 2.043526 AGGTACTCCCTCCGTTCCTAAA 59.956 50.000 0.00 0.00 40.71 1.85
510 511 1.642762 AGGTACTCCCTCCGTTCCTAA 59.357 52.381 0.00 0.00 40.71 2.69
511 512 1.302907 AGGTACTCCCTCCGTTCCTA 58.697 55.000 0.00 0.00 40.71 2.94
512 513 0.412640 AAGGTACTCCCTCCGTTCCT 59.587 55.000 0.00 0.00 45.47 3.36
513 514 1.273759 AAAGGTACTCCCTCCGTTCC 58.726 55.000 0.00 0.00 45.47 3.62
514 515 3.413846 AAAAAGGTACTCCCTCCGTTC 57.586 47.619 0.00 0.00 45.47 3.95
515 516 3.262660 CCTAAAAAGGTACTCCCTCCGTT 59.737 47.826 0.00 0.00 45.47 4.44
516 517 2.836372 CCTAAAAAGGTACTCCCTCCGT 59.164 50.000 0.00 0.00 45.47 4.69
517 518 3.102204 TCCTAAAAAGGTACTCCCTCCG 58.898 50.000 0.00 0.00 45.47 4.63
518 519 5.509832 TTTCCTAAAAAGGTACTCCCTCC 57.490 43.478 0.00 0.00 45.47 4.30
544 545 9.139174 CAGTTTTGTTAGGCCAAGTATTTATTG 57.861 33.333 5.01 0.00 0.00 1.90
551 552 5.528320 GTGTACAGTTTTGTTAGGCCAAGTA 59.472 40.000 5.01 0.00 38.76 2.24
676 679 1.136110 GGCTTCTAGAGTGCTCTGGAC 59.864 57.143 13.62 5.08 45.03 4.02
714 717 1.478105 GAAATGAACTGGGGATGGTGC 59.522 52.381 0.00 0.00 0.00 5.01
724 727 3.362831 GCTGAACATTGCGAAATGAACTG 59.637 43.478 23.21 17.66 34.39 3.16
725 728 3.254166 AGCTGAACATTGCGAAATGAACT 59.746 39.130 23.21 8.83 34.39 3.01
726 729 3.568538 AGCTGAACATTGCGAAATGAAC 58.431 40.909 23.21 15.00 34.39 3.18
905 909 5.955488 TGCGCAATACTTTAATGCCTTTAA 58.045 33.333 8.16 0.00 36.75 1.52
906 910 5.568685 TGCGCAATACTTTAATGCCTTTA 57.431 34.783 8.16 0.00 36.75 1.85
907 911 4.448537 TGCGCAATACTTTAATGCCTTT 57.551 36.364 8.16 0.00 36.75 3.11
908 912 4.610945 GATGCGCAATACTTTAATGCCTT 58.389 39.130 17.11 0.00 36.75 4.35
909 913 3.303990 CGATGCGCAATACTTTAATGCCT 60.304 43.478 17.11 0.00 36.75 4.75
910 914 2.973224 CGATGCGCAATACTTTAATGCC 59.027 45.455 17.11 0.00 36.75 4.40
950 967 2.182030 CTTCCTCTGCGACGGTCC 59.818 66.667 1.91 0.00 0.00 4.46
1484 1505 6.692681 ACGCAAATTACAATCACATAATGAGC 59.307 34.615 0.00 0.00 41.91 4.26
1556 1577 4.450976 TGTGGTTTAGAATCCATCGGATG 58.549 43.478 11.07 11.07 42.27 3.51
1610 1631 6.126332 ACACACCAAATTATTTCCCCCTTTTT 60.126 34.615 0.00 0.00 0.00 1.94
1674 1695 6.593770 TGGACTGTATACTTGCAAACTATGTG 59.406 38.462 0.00 0.00 0.00 3.21
1677 1698 5.810587 CGTGGACTGTATACTTGCAAACTAT 59.189 40.000 0.00 1.14 0.00 2.12
1693 1714 3.120889 CGATTGCAATATAGCGTGGACTG 60.121 47.826 12.97 0.00 37.31 3.51
1694 1715 3.059884 CGATTGCAATATAGCGTGGACT 58.940 45.455 12.97 0.00 37.31 3.85
1784 1808 8.553153 TCCTTAACATGTCATCCCTAAAATACA 58.447 33.333 0.00 0.00 0.00 2.29
1785 1809 8.974060 TCCTTAACATGTCATCCCTAAAATAC 57.026 34.615 0.00 0.00 0.00 1.89
1824 1848 8.565896 TCAGTTATTTGAGCATGACAACTAAT 57.434 30.769 0.00 0.00 0.00 1.73
1953 1977 6.324819 CAAAAATATCACACCACAGATCACC 58.675 40.000 0.00 0.00 0.00 4.02
1989 2013 8.896744 CACATCAATTTGCCTATTCTCTAGAAA 58.103 33.333 0.00 0.00 37.61 2.52
2033 2057 7.798596 TTTACCAAACGAATTACACCTGTTA 57.201 32.000 0.00 0.00 0.00 2.41
2099 2123 8.728088 ACTTAAACAAACATAATCTGAAAGCG 57.272 30.769 0.00 0.00 0.00 4.68
2226 2251 9.445878 GATTACTTAAAAGGTTGTAGGCTAGTT 57.554 33.333 0.00 0.00 0.00 2.24
2227 2252 8.599792 TGATTACTTAAAAGGTTGTAGGCTAGT 58.400 33.333 0.00 0.00 0.00 2.57
2228 2253 9.444600 TTGATTACTTAAAAGGTTGTAGGCTAG 57.555 33.333 0.00 0.00 0.00 3.42
2229 2254 9.969001 ATTGATTACTTAAAAGGTTGTAGGCTA 57.031 29.630 0.00 0.00 0.00 3.93
2230 2255 8.879427 ATTGATTACTTAAAAGGTTGTAGGCT 57.121 30.769 0.00 0.00 0.00 4.58
2231 2256 9.923143 AAATTGATTACTTAAAAGGTTGTAGGC 57.077 29.630 0.00 0.00 0.00 3.93
2235 2260 9.981114 CTCCAAATTGATTACTTAAAAGGTTGT 57.019 29.630 0.00 0.00 0.00 3.32
2236 2261 9.981114 ACTCCAAATTGATTACTTAAAAGGTTG 57.019 29.630 0.00 0.00 0.00 3.77
2270 2295 2.173356 TCCAGGGATTTCACATGGCTAG 59.827 50.000 0.00 0.00 0.00 3.42
2276 2301 1.918262 TCTGCTCCAGGGATTTCACAT 59.082 47.619 0.00 0.00 31.51 3.21
2278 2303 1.280421 AGTCTGCTCCAGGGATTTCAC 59.720 52.381 0.00 0.00 31.51 3.18
2389 2416 5.621228 CAGAGCACGTTAAATGACAAAGAAC 59.379 40.000 0.00 0.00 0.00 3.01
2413 2440 6.363357 GTGCAGAAGTGGTTTTAATGATGTTC 59.637 38.462 0.00 0.00 0.00 3.18
2434 2461 2.837498 CATCCCATTCAGATACGTGCA 58.163 47.619 0.00 0.00 0.00 4.57
2488 2515 1.471684 AGTTTCGCTACCACGGACTAG 59.528 52.381 0.00 0.00 31.37 2.57
2495 2522 5.062308 CACATAAGAAGAGTTTCGCTACCAC 59.938 44.000 0.00 0.00 38.38 4.16
2502 2529 8.251750 TGTAATTCCACATAAGAAGAGTTTCG 57.748 34.615 0.00 0.00 38.38 3.46
2530 2557 7.737972 TCAATCTCCACAATTAAACGAAGAA 57.262 32.000 0.00 0.00 0.00 2.52
2883 2910 2.353889 ACGATGCTCATTCTGTCAATGC 59.646 45.455 0.00 0.00 0.00 3.56
2948 2980 0.318120 AAATGCCTGAAAACTGCCCG 59.682 50.000 0.00 0.00 0.00 6.13
2950 2982 2.036346 ACAGAAATGCCTGAAAACTGCC 59.964 45.455 0.00 0.00 37.59 4.85
2982 3014 7.829725 AGTAGCAACTGAAAATGCAATAATGA 58.170 30.769 0.00 0.00 44.95 2.57
3130 3162 2.629617 CCATGAATTGGTCCCCTTATGC 59.370 50.000 0.00 0.00 40.99 3.14
3180 3212 6.470556 CACGTGTTATCACTTATCACTCTGAG 59.529 42.308 7.58 2.45 41.89 3.35
3184 3216 5.862323 ACACACGTGTTATCACTTATCACTC 59.138 40.000 20.79 0.00 41.83 3.51
3185 3217 5.633601 CACACACGTGTTATCACTTATCACT 59.366 40.000 20.79 0.00 42.83 3.41
3203 3235 1.892209 CTTCCCCAGTAACCACACAC 58.108 55.000 0.00 0.00 0.00 3.82
3218 3250 1.799544 CAAAGGGCAAACATGCTTCC 58.200 50.000 0.00 0.00 34.73 3.46
3319 3351 1.001378 GTTGCGCTGGATTTCACAACT 60.001 47.619 9.73 0.00 35.64 3.16
3334 3366 1.737793 GATTGGTGGGTTCTAGTTGCG 59.262 52.381 0.00 0.00 0.00 4.85
3372 3404 6.988580 TCATAGGTGTTCATCTCATCATTGTC 59.011 38.462 0.00 0.00 0.00 3.18
3418 3451 2.741517 CGAACATATTGCATATGCCCGA 59.258 45.455 24.54 11.20 45.05 5.14
3464 3497 8.442605 GCGTCTGCAAACACTTAAAATATTAA 57.557 30.769 0.00 0.00 42.15 1.40
3499 3532 4.497291 TTAAATACTGTAGCTGGGTGGG 57.503 45.455 0.00 0.00 0.00 4.61
3563 3596 4.934001 ACACAATGAGAACTACATCAGCTG 59.066 41.667 7.63 7.63 0.00 4.24
3570 3603 6.758254 TGATCTGAACACAATGAGAACTACA 58.242 36.000 0.00 0.00 0.00 2.74
3641 3674 4.415881 TTCAAACTTCTCTGGCAGTACA 57.584 40.909 15.27 0.00 0.00 2.90
3827 3860 3.218453 TCCTCTGGAGATTCTAAGCTCG 58.782 50.000 2.19 0.00 42.16 5.03
3893 3926 1.081892 TACGCTCGGCCTATATCGAC 58.918 55.000 0.00 0.00 0.00 4.20
3906 3939 5.299148 TCTACTCAGAGAATAGGTACGCTC 58.701 45.833 3.79 0.00 0.00 5.03
3994 4027 5.368374 CAACGAACGAACTATAAACACACC 58.632 41.667 0.14 0.00 0.00 4.16
4168 4204 3.930848 GCTTCTGCCATTTTTCATCCTTG 59.069 43.478 0.00 0.00 0.00 3.61
4263 4301 3.296943 CGCAAACAAAATGTCCGAATACG 59.703 43.478 0.00 0.00 39.43 3.06
4326 4364 5.773680 CCGGATAGAACCCTAGTTTCTATCA 59.226 44.000 30.18 11.39 40.42 2.15
4327 4365 5.774184 ACCGGATAGAACCCTAGTTTCTATC 59.226 44.000 26.10 26.10 39.41 2.08
4328 4366 5.713807 ACCGGATAGAACCCTAGTTTCTAT 58.286 41.667 9.46 17.72 35.94 1.98
4373 4418 1.974197 GCAATCTCCTCCTCCCTCCTT 60.974 57.143 0.00 0.00 0.00 3.36
4471 4516 1.280998 CTTTTCTTAGGGAGCCGGGAA 59.719 52.381 2.18 0.00 0.00 3.97
4488 4533 9.933723 AGAAGCAATTAATATTTGTTCAGCTTT 57.066 25.926 0.00 0.00 38.55 3.51
4538 4583 7.460071 AGTAAACCTCTCTATATAAGGAGCGA 58.540 38.462 6.04 0.00 34.16 4.93
4540 4585 9.080097 TCAAGTAAACCTCTCTATATAAGGAGC 57.920 37.037 6.04 0.00 34.16 4.70
4714 6889 2.356135 GACGAATACCAGCAACCATGT 58.644 47.619 0.00 0.00 0.00 3.21
4733 6908 1.003355 CGGCAGGAGCAAAGAAGGA 60.003 57.895 0.00 0.00 44.61 3.36
4815 7004 4.899239 GGCGCAGAGATCACGGGG 62.899 72.222 10.83 0.00 0.00 5.73
4818 7007 2.842394 AAGGTGGCGCAGAGATCACG 62.842 60.000 10.83 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.