Multiple sequence alignment - TraesCS5A01G162000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G162000 chr5A 100.000 5376 0 0 950 6325 345771578 345766203 0.000000e+00 9928.0
1 TraesCS5A01G162000 chr5A 100.000 625 0 0 1 625 345772527 345771903 0.000000e+00 1155.0
2 TraesCS5A01G162000 chr5B 95.822 2202 59 11 3711 5907 294080062 294077889 0.000000e+00 3526.0
3 TraesCS5A01G162000 chr5B 95.351 2237 56 21 1350 3545 294083300 294081071 0.000000e+00 3511.0
4 TraesCS5A01G162000 chr5B 92.377 446 14 10 177 617 294084251 294083821 9.010000e-173 617.0
5 TraesCS5A01G162000 chr5B 88.406 414 16 6 953 1353 294083825 294083431 2.670000e-128 470.0
6 TraesCS5A01G162000 chr5B 91.304 69 3 2 6029 6094 294077811 294077743 2.430000e-14 91.6
7 TraesCS5A01G162000 chr5D 87.721 1637 126 46 1659 3234 260378093 260379715 0.000000e+00 1840.0
8 TraesCS5A01G162000 chr5D 89.300 1458 91 25 4678 6094 260380120 260381553 0.000000e+00 1768.0
9 TraesCS5A01G162000 chr5D 86.702 752 32 22 955 1665 260377339 260378063 0.000000e+00 773.0
10 TraesCS5A01G162000 chr5D 89.823 452 11 11 178 622 260376911 260377334 1.200000e-151 547.0
11 TraesCS5A01G162000 chr5D 91.216 148 13 0 1 148 445106631 445106484 1.080000e-47 202.0
12 TraesCS5A01G162000 chr5D 90.789 152 13 1 2 153 491000715 491000565 1.080000e-47 202.0
13 TraesCS5A01G162000 chr5D 90.210 143 8 1 3240 3382 260379762 260379898 1.400000e-41 182.0
14 TraesCS5A01G162000 chr5D 100.000 32 0 0 6294 6325 261194682 261194713 6.850000e-05 60.2
15 TraesCS5A01G162000 chr5D 100.000 32 0 0 6294 6325 261214561 261214592 6.850000e-05 60.2
16 TraesCS5A01G162000 chr1B 85.700 979 131 8 3695 4666 61008054 61009030 0.000000e+00 1024.0
17 TraesCS5A01G162000 chr1B 100.000 31 0 0 6294 6324 660247237 660247207 2.460000e-04 58.4
18 TraesCS5A01G162000 chr2B 81.703 869 142 10 3695 4553 439774328 439775189 0.000000e+00 708.0
19 TraesCS5A01G162000 chr2B 92.361 144 11 0 1 144 801166096 801165953 8.310000e-49 206.0
20 TraesCS5A01G162000 chr4D 79.232 963 181 15 3710 4660 127105755 127104800 0.000000e+00 652.0
21 TraesCS5A01G162000 chr4D 96.875 32 1 0 6294 6325 150862426 150862395 3.000000e-03 54.7
22 TraesCS5A01G162000 chr1D 77.987 745 148 12 3698 4432 3234016 3234754 2.690000e-123 453.0
23 TraesCS5A01G162000 chr1D 90.385 156 12 3 1 156 362598035 362597883 1.080000e-47 202.0
24 TraesCS5A01G162000 chr6A 83.807 352 52 3 3695 4041 85263429 85263078 4.730000e-86 329.0
25 TraesCS5A01G162000 chr6A 100.000 32 0 0 6294 6325 475013982 475014013 6.850000e-05 60.2
26 TraesCS5A01G162000 chr2A 80.086 467 67 12 3695 4139 73185663 73185201 2.200000e-84 324.0
27 TraesCS5A01G162000 chr6D 93.056 144 10 0 1 144 25766788 25766931 1.790000e-50 211.0
28 TraesCS5A01G162000 chr6D 90.789 152 13 1 1 152 458986308 458986158 1.080000e-47 202.0
29 TraesCS5A01G162000 chr6D 100.000 32 0 0 6294 6325 356849965 356849934 6.850000e-05 60.2
30 TraesCS5A01G162000 chr3A 93.056 144 10 0 1 144 64291087 64290944 1.790000e-50 211.0
31 TraesCS5A01G162000 chrUn 92.361 144 11 0 1 144 112299360 112299217 8.310000e-49 206.0
32 TraesCS5A01G162000 chr3D 92.361 144 11 0 1 144 550509453 550509596 8.310000e-49 206.0
33 TraesCS5A01G162000 chr1A 84.848 198 20 6 3698 3895 591931924 591931737 2.330000e-44 191.0
34 TraesCS5A01G162000 chr1A 78.736 174 33 3 3695 3866 480433904 480433733 5.180000e-21 113.0
35 TraesCS5A01G162000 chr7B 82.171 129 23 0 4747 4875 348025452 348025580 1.860000e-20 111.0
36 TraesCS5A01G162000 chr7B 97.143 35 1 0 150 184 541951335 541951301 6.850000e-05 60.2
37 TraesCS5A01G162000 chr7D 86.735 98 13 0 4777 4874 320277830 320277733 6.700000e-20 110.0
38 TraesCS5A01G162000 chr7D 96.875 32 1 0 6294 6325 46542609 46542640 3.000000e-03 54.7
39 TraesCS5A01G162000 chr7A 86.735 98 13 0 4777 4874 384431079 384431176 6.700000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G162000 chr5A 345766203 345772527 6324 True 5541.50 9928 100.0000 1 6325 2 chr5A.!!$R1 6324
1 TraesCS5A01G162000 chr5B 294077743 294084251 6508 True 1643.12 3526 92.6520 177 6094 5 chr5B.!!$R1 5917
2 TraesCS5A01G162000 chr5D 260376911 260381553 4642 False 1022.00 1840 88.7512 178 6094 5 chr5D.!!$F3 5916
3 TraesCS5A01G162000 chr1B 61008054 61009030 976 False 1024.00 1024 85.7000 3695 4666 1 chr1B.!!$F1 971
4 TraesCS5A01G162000 chr2B 439774328 439775189 861 False 708.00 708 81.7030 3695 4553 1 chr2B.!!$F1 858
5 TraesCS5A01G162000 chr4D 127104800 127105755 955 True 652.00 652 79.2320 3710 4660 1 chr4D.!!$R1 950
6 TraesCS5A01G162000 chr1D 3234016 3234754 738 False 453.00 453 77.9870 3698 4432 1 chr1D.!!$F1 734

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
997 1005 0.337428 AATCCAAGCAAGCCCATCCT 59.663 50.000 0.0 0.0 0.0 3.24 F
1373 1536 1.081175 GCGTCCCTTGCTTTTCTGC 60.081 57.895 0.0 0.0 0.0 4.26 F
1850 2064 0.676782 CCCCGGTTGATGAAGGTGTC 60.677 60.000 0.0 0.0 0.0 3.67 F
3587 4770 1.014044 CATGGGTGAGGAACGTGTCG 61.014 60.000 0.0 0.0 0.0 4.35 F
3991 5223 0.254747 TTTTGATGCCTAGACCCCCG 59.745 55.000 0.0 0.0 0.0 5.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1850 2064 2.028385 AGTACACAACTAAGAAGGGGCG 60.028 50.000 0.00 0.0 36.36 6.13 R
3235 3506 2.298729 TGCCTTGCAAACCATAACTTCC 59.701 45.455 0.00 0.0 34.76 3.46 R
3673 4856 0.255033 TGGCCTACTCGCTACTCTGA 59.745 55.000 3.32 0.0 0.00 3.27 R
4621 5857 1.461268 TCTCCAGCAAGGTGACCCA 60.461 57.895 0.00 0.0 35.06 4.51 R
5818 7093 1.694150 TCAGTTCACTCAAGGGAGGTG 59.306 52.381 0.00 0.0 45.81 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 9.834628 ACATTTCAAATAAACTACAACATACGG 57.165 29.630 0.00 0.00 0.00 4.02
44 45 9.872721 TCAAATAAACTACAACATACGGATGTA 57.127 29.630 15.10 0.00 45.93 2.29
82 83 5.931441 AAGTGTAGATTCACTCACTTTGC 57.069 39.130 12.16 0.00 46.25 3.68
83 84 5.220710 AGTGTAGATTCACTCACTTTGCT 57.779 39.130 0.00 0.00 44.07 3.91
84 85 5.233988 AGTGTAGATTCACTCACTTTGCTC 58.766 41.667 0.00 0.00 44.07 4.26
85 86 4.390297 GTGTAGATTCACTCACTTTGCTCC 59.610 45.833 0.00 0.00 35.68 4.70
86 87 3.064900 AGATTCACTCACTTTGCTCCC 57.935 47.619 0.00 0.00 0.00 4.30
87 88 2.641815 AGATTCACTCACTTTGCTCCCT 59.358 45.455 0.00 0.00 0.00 4.20
88 89 3.840666 AGATTCACTCACTTTGCTCCCTA 59.159 43.478 0.00 0.00 0.00 3.53
89 90 4.472833 AGATTCACTCACTTTGCTCCCTAT 59.527 41.667 0.00 0.00 0.00 2.57
90 91 3.616956 TCACTCACTTTGCTCCCTATG 57.383 47.619 0.00 0.00 0.00 2.23
91 92 2.012673 CACTCACTTTGCTCCCTATGC 58.987 52.381 0.00 0.00 0.00 3.14
92 93 1.630369 ACTCACTTTGCTCCCTATGCA 59.370 47.619 0.00 0.00 38.80 3.96
93 94 2.286872 CTCACTTTGCTCCCTATGCAG 58.713 52.381 0.00 0.00 41.71 4.41
94 95 1.630369 TCACTTTGCTCCCTATGCAGT 59.370 47.619 0.00 0.00 41.71 4.40
95 96 2.012673 CACTTTGCTCCCTATGCAGTC 58.987 52.381 0.00 0.00 41.71 3.51
96 97 1.630369 ACTTTGCTCCCTATGCAGTCA 59.370 47.619 0.00 0.00 41.71 3.41
97 98 2.240667 ACTTTGCTCCCTATGCAGTCAT 59.759 45.455 0.00 0.00 41.71 3.06
98 99 3.285484 CTTTGCTCCCTATGCAGTCATT 58.715 45.455 0.00 0.00 41.71 2.57
99 100 3.370840 TTGCTCCCTATGCAGTCATTT 57.629 42.857 0.00 0.00 41.71 2.32
100 101 4.502105 TTGCTCCCTATGCAGTCATTTA 57.498 40.909 0.00 0.00 41.71 1.40
101 102 4.712051 TGCTCCCTATGCAGTCATTTAT 57.288 40.909 0.00 0.00 35.31 1.40
102 103 5.052693 TGCTCCCTATGCAGTCATTTATT 57.947 39.130 0.00 0.00 35.31 1.40
103 104 4.823442 TGCTCCCTATGCAGTCATTTATTG 59.177 41.667 0.00 0.00 35.31 1.90
104 105 5.065914 GCTCCCTATGCAGTCATTTATTGA 58.934 41.667 0.00 0.00 34.22 2.57
105 106 5.532406 GCTCCCTATGCAGTCATTTATTGAA 59.468 40.000 0.00 0.00 35.70 2.69
106 107 6.039717 GCTCCCTATGCAGTCATTTATTGAAA 59.960 38.462 0.00 0.00 35.70 2.69
107 108 7.255730 GCTCCCTATGCAGTCATTTATTGAAAT 60.256 37.037 0.00 0.00 35.70 2.17
108 109 9.288576 CTCCCTATGCAGTCATTTATTGAAATA 57.711 33.333 0.00 0.00 35.70 1.40
109 110 9.812347 TCCCTATGCAGTCATTTATTGAAATAT 57.188 29.630 0.00 0.00 35.70 1.28
142 143 9.440761 AGACTTATATTTAGGAACAGATGGAGT 57.559 33.333 0.00 0.00 0.00 3.85
175 176 5.762825 AAATGAGACATGTATCACCATGC 57.237 39.130 24.52 0.00 44.88 4.06
176 177 3.910568 TGAGACATGTATCACCATGCA 57.089 42.857 18.92 0.00 44.88 3.96
177 178 4.219264 TGAGACATGTATCACCATGCAA 57.781 40.909 18.92 0.00 44.88 4.08
178 179 4.587891 TGAGACATGTATCACCATGCAAA 58.412 39.130 18.92 0.00 44.88 3.68
179 180 4.637091 TGAGACATGTATCACCATGCAAAG 59.363 41.667 18.92 0.00 44.88 2.77
180 181 4.847198 AGACATGTATCACCATGCAAAGA 58.153 39.130 0.00 0.00 44.88 2.52
181 182 5.255687 AGACATGTATCACCATGCAAAGAA 58.744 37.500 0.00 0.00 44.88 2.52
182 183 5.711506 AGACATGTATCACCATGCAAAGAAA 59.288 36.000 0.00 0.00 44.88 2.52
301 303 1.744522 GAGTCGTAGAGGAGACCAACC 59.255 57.143 0.00 0.00 36.95 3.77
376 384 4.640855 ATCGGTATCACGCCCGCG 62.641 66.667 7.69 7.69 43.87 6.46
535 543 2.675423 CACTCCCGTCTCCGTCCA 60.675 66.667 0.00 0.00 0.00 4.02
546 554 4.109675 CCGTCCATCCACCCCACC 62.110 72.222 0.00 0.00 0.00 4.61
547 555 4.109675 CGTCCATCCACCCCACCC 62.110 72.222 0.00 0.00 0.00 4.61
548 556 3.739613 GTCCATCCACCCCACCCC 61.740 72.222 0.00 0.00 0.00 4.95
549 557 4.293696 TCCATCCACCCCACCCCA 62.294 66.667 0.00 0.00 0.00 4.96
614 622 2.359975 CAACACGCCTCCCTTCCC 60.360 66.667 0.00 0.00 0.00 3.97
615 623 3.647771 AACACGCCTCCCTTCCCC 61.648 66.667 0.00 0.00 0.00 4.81
616 624 4.658786 ACACGCCTCCCTTCCCCT 62.659 66.667 0.00 0.00 0.00 4.79
617 625 3.330720 CACGCCTCCCTTCCCCTT 61.331 66.667 0.00 0.00 0.00 3.95
620 628 3.421386 GCCTCCCTTCCCCTTCCC 61.421 72.222 0.00 0.00 0.00 3.97
621 629 2.696504 CCTCCCTTCCCCTTCCCC 60.697 72.222 0.00 0.00 0.00 4.81
622 630 2.696504 CTCCCTTCCCCTTCCCCC 60.697 72.222 0.00 0.00 0.00 5.40
987 995 3.626930 ACCCGCTATAAAAATCCAAGCA 58.373 40.909 0.00 0.00 32.69 3.91
988 996 4.020543 ACCCGCTATAAAAATCCAAGCAA 58.979 39.130 0.00 0.00 32.69 3.91
989 997 4.097892 ACCCGCTATAAAAATCCAAGCAAG 59.902 41.667 0.00 0.00 32.69 4.01
990 998 4.044426 CCGCTATAAAAATCCAAGCAAGC 58.956 43.478 0.00 0.00 32.69 4.01
997 1005 0.337428 AATCCAAGCAAGCCCATCCT 59.663 50.000 0.00 0.00 0.00 3.24
1001 1009 1.553706 CAAGCAAGCCCATCCTTTCT 58.446 50.000 0.00 0.00 0.00 2.52
1341 1370 1.229428 CACGCCTTTTCTCTTCTGCA 58.771 50.000 0.00 0.00 0.00 4.41
1360 1523 2.153039 GCAAGCCAATTTTGCGTCC 58.847 52.632 0.00 0.00 41.16 4.79
1373 1536 1.081175 GCGTCCCTTGCTTTTCTGC 60.081 57.895 0.00 0.00 0.00 4.26
1666 1844 5.693961 TGGCTGATAGCTCAAATTCCATTA 58.306 37.500 0.00 0.00 41.99 1.90
1850 2064 0.676782 CCCCGGTTGATGAAGGTGTC 60.677 60.000 0.00 0.00 0.00 3.67
2047 2263 6.877611 TCTTGTTTCCTAGTCCATGTTTTC 57.122 37.500 0.00 0.00 0.00 2.29
2054 2270 5.902681 TCCTAGTCCATGTTTTCTATGACG 58.097 41.667 0.00 0.00 0.00 4.35
2078 2294 6.428465 CGTAGCTAATCTCAGAAGATACCAGA 59.572 42.308 0.00 0.00 41.54 3.86
2137 2353 5.539955 AGAGTGTTGCAATCCCAACTAAAAT 59.460 36.000 0.59 0.00 44.12 1.82
2238 2456 7.510407 AGGAAGTTAAATATGAGCTCTAACCC 58.490 38.462 16.19 11.39 0.00 4.11
2308 2526 5.439721 TCTCTCTCCTTCTCTGATTCTCTG 58.560 45.833 0.00 0.00 0.00 3.35
2315 2545 9.653516 TCTCCTTCTCTGATTCTCTGTAATTAT 57.346 33.333 0.00 0.00 0.00 1.28
2379 2609 4.961099 TGGGATTTCATATGCCATGACAAA 59.039 37.500 0.00 0.00 34.49 2.83
2485 2717 5.713025 CCCTTTTGTTGTTCTGTATCATGG 58.287 41.667 0.00 0.00 0.00 3.66
2919 3186 7.880160 TGCTAACAGCTATGGTCATAATTTT 57.120 32.000 0.00 0.00 42.97 1.82
2954 3222 8.234546 GCTTTAAGATTCACGGATAAACTTGAA 58.765 33.333 0.00 0.00 32.71 2.69
3003 3273 3.696548 TGTAGCACTCTCAGATGTACTGG 59.303 47.826 0.00 0.00 45.76 4.00
3036 3306 8.094798 TCTACAACACAATGAATCTTACCAAC 57.905 34.615 0.00 0.00 0.00 3.77
3042 3312 8.324163 ACACAATGAATCTTACCAACTAGTTC 57.676 34.615 4.77 0.00 0.00 3.01
3147 3417 7.275920 AGCACTTGGAAGGTATATTCTGTAAG 58.724 38.462 0.00 0.00 0.00 2.34
3235 3506 2.220653 ACTTCCATGTGTTGGGATGG 57.779 50.000 0.00 0.00 46.45 3.51
3236 3507 1.272648 ACTTCCATGTGTTGGGATGGG 60.273 52.381 0.00 0.00 46.45 4.00
3282 3594 9.050154 AGGAATTTTCTGTGATGGGAATTTATT 57.950 29.630 0.00 0.00 0.00 1.40
3545 3920 9.874215 CATAGTATGTAACATTCAAAGCATCAG 57.126 33.333 1.65 0.00 0.00 2.90
3546 3921 7.928307 AGTATGTAACATTCAAAGCATCAGT 57.072 32.000 0.00 0.00 0.00 3.41
3547 3922 8.340618 AGTATGTAACATTCAAAGCATCAGTT 57.659 30.769 0.00 0.00 0.00 3.16
3550 4732 7.503521 TGTAACATTCAAAGCATCAGTTACA 57.496 32.000 10.19 10.19 44.10 2.41
3569 4752 2.373169 ACATTGAAGAGAAGGTGAGCCA 59.627 45.455 0.00 0.00 37.19 4.75
3582 4765 1.450312 GAGCCATGGGTGAGGAACG 60.450 63.158 23.86 0.00 0.00 3.95
3587 4770 1.014044 CATGGGTGAGGAACGTGTCG 61.014 60.000 0.00 0.00 0.00 4.35
3592 4775 1.658114 TGAGGAACGTGTCGTCAGG 59.342 57.895 14.69 0.82 44.27 3.86
3632 4815 7.062839 GCAACATACTGAAACAAAGACAAAACA 59.937 33.333 0.00 0.00 0.00 2.83
3643 4826 2.017049 AGACAAAACAGACGCAAGCTT 58.983 42.857 0.00 0.00 45.62 3.74
3646 4829 4.275936 AGACAAAACAGACGCAAGCTTTAT 59.724 37.500 0.00 0.00 45.62 1.40
3658 4841 5.106157 ACGCAAGCTTTATAGAAGCAACATT 60.106 36.000 12.66 0.00 45.30 2.71
3659 4842 5.801947 CGCAAGCTTTATAGAAGCAACATTT 59.198 36.000 12.66 0.00 45.30 2.32
3660 4843 6.237384 CGCAAGCTTTATAGAAGCAACATTTG 60.237 38.462 12.66 8.77 45.30 2.32
3670 4853 1.539827 AGCAACATTTGTTAGGCGGTC 59.460 47.619 0.00 0.00 36.32 4.79
3688 4871 2.215196 GTCCCTCAGAGTAGCGAGTAG 58.785 57.143 0.00 0.00 0.00 2.57
3693 4876 0.382515 CAGAGTAGCGAGTAGGCCAC 59.617 60.000 5.01 0.54 0.00 5.01
3732 4956 2.049063 GTGTCTGCGAGCGGAGTT 60.049 61.111 6.88 0.00 35.04 3.01
3741 4965 2.925170 AGCGGAGTTGGGAGCAGT 60.925 61.111 0.00 0.00 0.00 4.40
3834 5062 3.865745 AGCTGTTCGTTTATGATTCTCCG 59.134 43.478 0.00 0.00 0.00 4.63
3991 5223 0.254747 TTTTGATGCCTAGACCCCCG 59.745 55.000 0.00 0.00 0.00 5.73
4057 5289 1.375396 CCCCGAGCATGTTTCGTCA 60.375 57.895 16.72 0.00 36.37 4.35
4079 5311 1.974236 CGGCCCAGAAGAAGGATCTAT 59.026 52.381 0.00 0.00 33.77 1.98
4087 5319 5.483231 CCAGAAGAAGGATCTATGGATAGCA 59.517 44.000 0.00 0.00 41.78 3.49
4131 5363 2.289819 TGGGTAGCCTAAAAACGGACAG 60.290 50.000 13.11 0.00 0.00 3.51
4139 5375 4.324267 CCTAAAAACGGACAGGAAGTGAT 58.676 43.478 0.00 0.00 0.00 3.06
4149 5385 0.779997 AGGAAGTGATTGGCAAGGGT 59.220 50.000 5.96 0.00 0.00 4.34
4422 5658 1.823610 GTTAAGACCAGTAGCGAGGGT 59.176 52.381 0.00 0.00 37.70 4.34
4596 5832 1.659954 GCTGTAGCAGATCGGCGAG 60.660 63.158 17.22 10.48 41.59 5.03
4621 5857 7.034273 AGGATTATGAATAGGTAGGGGGATAGT 60.034 40.741 0.00 0.00 0.00 2.12
4906 6145 1.379044 GTGTGAATCCCCAGGGCTG 60.379 63.158 0.00 0.00 34.68 4.85
5441 6680 6.379133 AGCATGGCATATGGAGGTTAATATTG 59.621 38.462 0.00 0.00 0.00 1.90
5467 6706 3.258372 TCTTGATGACTTGTACGAGCCTT 59.742 43.478 10.23 0.00 0.00 4.35
5512 6751 1.780860 GTGCATTCAACGCTTTGTGAC 59.219 47.619 2.56 0.00 34.02 3.67
5520 6759 3.187022 TCAACGCTTTGTGACATGATGAG 59.813 43.478 0.00 0.00 34.02 2.90
5694 6965 1.269723 GTTAGGCTGTGAAAGTTGGGC 59.730 52.381 0.00 0.00 0.00 5.36
5697 6968 1.244019 GGCTGTGAAAGTTGGGCGAT 61.244 55.000 0.00 0.00 0.00 4.58
5707 6978 5.758296 TGAAAGTTGGGCGATGTTATCTATC 59.242 40.000 0.00 0.00 0.00 2.08
5723 6994 8.328758 TGTTATCTATCTGTTGGGAAATGAAGT 58.671 33.333 0.00 0.00 0.00 3.01
5751 7022 8.154856 AGAGCAACCTTTTATGAGTTACTGTTA 58.845 33.333 0.00 0.00 0.00 2.41
5823 7098 9.421806 CAGATATTCATAAGTTCTGATCACCTC 57.578 37.037 0.00 0.00 36.72 3.85
5838 7113 1.694150 CACCTCCCTTGAGTGAACTGA 59.306 52.381 0.00 0.00 36.86 3.41
5907 7182 3.276857 ACTCATACATGCAAGCAAGGAG 58.723 45.455 0.00 2.13 0.00 3.69
5909 7184 4.135306 CTCATACATGCAAGCAAGGAGAT 58.865 43.478 0.00 0.00 0.00 2.75
5987 7262 1.003464 CCCAAATCCCCAAAGCCAAAG 59.997 52.381 0.00 0.00 0.00 2.77
6045 7320 0.957395 CTGCGTCAAAGCCATCCACT 60.957 55.000 0.00 0.00 36.02 4.00
6053 7328 0.322816 AAGCCATCCACTGCGTCAAT 60.323 50.000 0.00 0.00 0.00 2.57
6094 7372 7.775120 CCATGAAAGGCACTAATGTTTATTCT 58.225 34.615 0.00 0.00 38.49 2.40
6095 7373 8.253113 CCATGAAAGGCACTAATGTTTATTCTT 58.747 33.333 0.00 0.00 38.49 2.52
6096 7374 9.079833 CATGAAAGGCACTAATGTTTATTCTTG 57.920 33.333 0.00 0.00 38.49 3.02
6097 7375 8.402798 TGAAAGGCACTAATGTTTATTCTTGA 57.597 30.769 0.00 0.00 38.49 3.02
6098 7376 8.855110 TGAAAGGCACTAATGTTTATTCTTGAA 58.145 29.630 0.00 0.00 38.49 2.69
6099 7377 9.691362 GAAAGGCACTAATGTTTATTCTTGAAA 57.309 29.630 0.00 0.00 38.49 2.69
6101 7379 9.476202 AAGGCACTAATGTTTATTCTTGAAAAC 57.524 29.630 0.00 0.00 38.49 2.43
6102 7380 8.860088 AGGCACTAATGTTTATTCTTGAAAACT 58.140 29.630 0.00 0.00 36.02 2.66
6103 7381 9.129209 GGCACTAATGTTTATTCTTGAAAACTC 57.871 33.333 0.00 0.00 36.70 3.01
6104 7382 9.129209 GCACTAATGTTTATTCTTGAAAACTCC 57.871 33.333 0.00 0.00 36.70 3.85
6109 7387 8.593492 ATGTTTATTCTTGAAAACTCCTTTGC 57.407 30.769 0.00 0.00 36.70 3.68
6110 7388 7.781056 TGTTTATTCTTGAAAACTCCTTTGCT 58.219 30.769 0.00 0.00 36.70 3.91
6111 7389 8.257306 TGTTTATTCTTGAAAACTCCTTTGCTT 58.743 29.630 0.00 0.00 36.70 3.91
6112 7390 9.744468 GTTTATTCTTGAAAACTCCTTTGCTTA 57.256 29.630 0.00 0.00 33.71 3.09
6117 7395 9.744468 TTCTTGAAAACTCCTTTGCTTATTTAC 57.256 29.630 0.00 0.00 0.00 2.01
6118 7396 8.357402 TCTTGAAAACTCCTTTGCTTATTTACC 58.643 33.333 0.00 0.00 0.00 2.85
6119 7397 7.589958 TGAAAACTCCTTTGCTTATTTACCA 57.410 32.000 0.00 0.00 0.00 3.25
6120 7398 8.012957 TGAAAACTCCTTTGCTTATTTACCAA 57.987 30.769 0.00 0.00 0.00 3.67
6121 7399 8.478877 TGAAAACTCCTTTGCTTATTTACCAAA 58.521 29.630 0.00 0.00 0.00 3.28
6122 7400 9.320352 GAAAACTCCTTTGCTTATTTACCAAAA 57.680 29.630 0.00 0.00 0.00 2.44
6123 7401 9.674068 AAAACTCCTTTGCTTATTTACCAAAAA 57.326 25.926 0.00 0.00 0.00 1.94
6124 7402 8.887036 AACTCCTTTGCTTATTTACCAAAAAG 57.113 30.769 0.00 0.00 0.00 2.27
6125 7403 7.441836 ACTCCTTTGCTTATTTACCAAAAAGG 58.558 34.615 5.17 5.17 42.21 3.11
6126 7404 6.227522 TCCTTTGCTTATTTACCAAAAAGGC 58.772 36.000 6.44 0.00 41.16 4.35
6127 7405 6.042666 TCCTTTGCTTATTTACCAAAAAGGCT 59.957 34.615 6.44 0.00 41.16 4.58
6128 7406 6.710295 CCTTTGCTTATTTACCAAAAAGGCTT 59.290 34.615 0.00 0.00 43.14 4.35
6129 7407 7.228507 CCTTTGCTTATTTACCAAAAAGGCTTT 59.771 33.333 6.68 6.68 43.14 3.51
6130 7408 7.489574 TTGCTTATTTACCAAAAAGGCTTTG 57.510 32.000 14.19 2.25 43.14 2.77
6145 7423 3.885724 GCTTTGGCCCTGCTTTATAAA 57.114 42.857 0.00 0.00 0.00 1.40
6146 7424 4.406648 GCTTTGGCCCTGCTTTATAAAT 57.593 40.909 0.00 0.00 0.00 1.40
6147 7425 5.529581 GCTTTGGCCCTGCTTTATAAATA 57.470 39.130 0.00 0.00 0.00 1.40
6148 7426 5.912892 GCTTTGGCCCTGCTTTATAAATAA 58.087 37.500 0.00 0.00 0.00 1.40
6149 7427 6.345298 GCTTTGGCCCTGCTTTATAAATAAA 58.655 36.000 0.00 0.00 0.00 1.40
6161 7439 7.216920 CTTTATAAATAAAGCAAACCGCCAC 57.783 36.000 9.01 0.00 41.69 5.01
6162 7440 4.792521 ATAAATAAAGCAAACCGCCACA 57.207 36.364 0.00 0.00 44.04 4.17
6163 7441 2.432206 AATAAAGCAAACCGCCACAC 57.568 45.000 0.00 0.00 44.04 3.82
6164 7442 1.323412 ATAAAGCAAACCGCCACACA 58.677 45.000 0.00 0.00 44.04 3.72
6165 7443 0.382515 TAAAGCAAACCGCCACACAC 59.617 50.000 0.00 0.00 44.04 3.82
6166 7444 2.291457 AAAGCAAACCGCCACACACC 62.291 55.000 0.00 0.00 44.04 4.16
6167 7445 3.522731 GCAAACCGCCACACACCA 61.523 61.111 0.00 0.00 32.94 4.17
6168 7446 2.411290 CAAACCGCCACACACCAC 59.589 61.111 0.00 0.00 0.00 4.16
6169 7447 2.831284 AAACCGCCACACACCACC 60.831 61.111 0.00 0.00 0.00 4.61
6170 7448 3.646942 AAACCGCCACACACCACCA 62.647 57.895 0.00 0.00 0.00 4.17
6171 7449 3.646942 AACCGCCACACACCACCAA 62.647 57.895 0.00 0.00 0.00 3.67
6172 7450 3.286751 CCGCCACACACCACCAAG 61.287 66.667 0.00 0.00 0.00 3.61
6173 7451 2.515991 CGCCACACACCACCAAGT 60.516 61.111 0.00 0.00 0.00 3.16
6174 7452 1.227704 CGCCACACACCACCAAGTA 60.228 57.895 0.00 0.00 0.00 2.24
6175 7453 1.503818 CGCCACACACCACCAAGTAC 61.504 60.000 0.00 0.00 0.00 2.73
6176 7454 1.170290 GCCACACACCACCAAGTACC 61.170 60.000 0.00 0.00 0.00 3.34
6177 7455 0.181587 CCACACACCACCAAGTACCA 59.818 55.000 0.00 0.00 0.00 3.25
6178 7456 1.305201 CACACACCACCAAGTACCAC 58.695 55.000 0.00 0.00 0.00 4.16
6179 7457 0.913205 ACACACCACCAAGTACCACA 59.087 50.000 0.00 0.00 0.00 4.17
6180 7458 1.282447 ACACACCACCAAGTACCACAA 59.718 47.619 0.00 0.00 0.00 3.33
6181 7459 2.092103 ACACACCACCAAGTACCACAAT 60.092 45.455 0.00 0.00 0.00 2.71
6182 7460 2.552315 CACACCACCAAGTACCACAATC 59.448 50.000 0.00 0.00 0.00 2.67
6183 7461 1.804151 CACCACCAAGTACCACAATCG 59.196 52.381 0.00 0.00 0.00 3.34
6184 7462 1.695242 ACCACCAAGTACCACAATCGA 59.305 47.619 0.00 0.00 0.00 3.59
6185 7463 2.105134 ACCACCAAGTACCACAATCGAA 59.895 45.455 0.00 0.00 0.00 3.71
6186 7464 3.244770 ACCACCAAGTACCACAATCGAAT 60.245 43.478 0.00 0.00 0.00 3.34
6187 7465 3.374058 CCACCAAGTACCACAATCGAATC 59.626 47.826 0.00 0.00 0.00 2.52
6188 7466 4.253685 CACCAAGTACCACAATCGAATCT 58.746 43.478 0.00 0.00 0.00 2.40
6189 7467 5.416083 CACCAAGTACCACAATCGAATCTA 58.584 41.667 0.00 0.00 0.00 1.98
6190 7468 5.291128 CACCAAGTACCACAATCGAATCTAC 59.709 44.000 0.00 0.00 0.00 2.59
6191 7469 5.046878 ACCAAGTACCACAATCGAATCTACA 60.047 40.000 0.00 0.00 0.00 2.74
6192 7470 5.872617 CCAAGTACCACAATCGAATCTACAA 59.127 40.000 0.00 0.00 0.00 2.41
6193 7471 6.183360 CCAAGTACCACAATCGAATCTACAAC 60.183 42.308 0.00 0.00 0.00 3.32
6194 7472 6.032956 AGTACCACAATCGAATCTACAACA 57.967 37.500 0.00 0.00 0.00 3.33
6195 7473 5.867716 AGTACCACAATCGAATCTACAACAC 59.132 40.000 0.00 0.00 0.00 3.32
6196 7474 4.637276 ACCACAATCGAATCTACAACACA 58.363 39.130 0.00 0.00 0.00 3.72
6197 7475 4.451096 ACCACAATCGAATCTACAACACAC 59.549 41.667 0.00 0.00 0.00 3.82
6198 7476 4.450757 CCACAATCGAATCTACAACACACA 59.549 41.667 0.00 0.00 0.00 3.72
6199 7477 5.374080 CACAATCGAATCTACAACACACAC 58.626 41.667 0.00 0.00 0.00 3.82
6200 7478 5.050431 CACAATCGAATCTACAACACACACA 60.050 40.000 0.00 0.00 0.00 3.72
6201 7479 5.050363 ACAATCGAATCTACAACACACACAC 60.050 40.000 0.00 0.00 0.00 3.82
6202 7480 4.048241 TCGAATCTACAACACACACACA 57.952 40.909 0.00 0.00 0.00 3.72
6203 7481 3.799963 TCGAATCTACAACACACACACAC 59.200 43.478 0.00 0.00 0.00 3.82
6204 7482 3.553917 CGAATCTACAACACACACACACA 59.446 43.478 0.00 0.00 0.00 3.72
6205 7483 4.550063 CGAATCTACAACACACACACACAC 60.550 45.833 0.00 0.00 0.00 3.82
6206 7484 3.320673 TCTACAACACACACACACACA 57.679 42.857 0.00 0.00 0.00 3.72
6207 7485 3.665190 TCTACAACACACACACACACAA 58.335 40.909 0.00 0.00 0.00 3.33
6208 7486 2.697431 ACAACACACACACACACAAC 57.303 45.000 0.00 0.00 0.00 3.32
6209 7487 1.950216 ACAACACACACACACACAACA 59.050 42.857 0.00 0.00 0.00 3.33
6210 7488 2.359214 ACAACACACACACACACAACAA 59.641 40.909 0.00 0.00 0.00 2.83
6211 7489 2.697431 ACACACACACACACAACAAC 57.303 45.000 0.00 0.00 0.00 3.32
6212 7490 1.950216 ACACACACACACACAACAACA 59.050 42.857 0.00 0.00 0.00 3.33
6213 7491 2.359214 ACACACACACACACAACAACAA 59.641 40.909 0.00 0.00 0.00 2.83
6214 7492 3.181486 ACACACACACACACAACAACAAA 60.181 39.130 0.00 0.00 0.00 2.83
6215 7493 3.986572 CACACACACACACAACAACAAAT 59.013 39.130 0.00 0.00 0.00 2.32
6216 7494 5.157067 CACACACACACACAACAACAAATA 58.843 37.500 0.00 0.00 0.00 1.40
6217 7495 5.804473 CACACACACACACAACAACAAATAT 59.196 36.000 0.00 0.00 0.00 1.28
6218 7496 6.969473 CACACACACACACAACAACAAATATA 59.031 34.615 0.00 0.00 0.00 0.86
6219 7497 6.970043 ACACACACACACAACAACAAATATAC 59.030 34.615 0.00 0.00 0.00 1.47
6220 7498 7.148154 ACACACACACACAACAACAAATATACT 60.148 33.333 0.00 0.00 0.00 2.12
6221 7499 8.338986 CACACACACACAACAACAAATATACTA 58.661 33.333 0.00 0.00 0.00 1.82
6222 7500 8.556194 ACACACACACAACAACAAATATACTAG 58.444 33.333 0.00 0.00 0.00 2.57
6223 7501 8.015087 CACACACACAACAACAAATATACTAGG 58.985 37.037 0.00 0.00 0.00 3.02
6224 7502 7.717875 ACACACACAACAACAAATATACTAGGT 59.282 33.333 0.00 0.00 0.00 3.08
6225 7503 8.564574 CACACACAACAACAAATATACTAGGTT 58.435 33.333 0.00 0.00 0.00 3.50
6226 7504 8.780249 ACACACAACAACAAATATACTAGGTTC 58.220 33.333 0.00 0.00 0.00 3.62
6227 7505 8.999431 CACACAACAACAAATATACTAGGTTCT 58.001 33.333 0.00 0.00 0.00 3.01
6228 7506 8.999431 ACACAACAACAAATATACTAGGTTCTG 58.001 33.333 0.00 0.00 0.00 3.02
6229 7507 8.999431 CACAACAACAAATATACTAGGTTCTGT 58.001 33.333 0.00 0.00 0.00 3.41
6230 7508 9.569122 ACAACAACAAATATACTAGGTTCTGTT 57.431 29.630 0.00 0.00 0.00 3.16
6231 7509 9.825972 CAACAACAAATATACTAGGTTCTGTTG 57.174 33.333 16.50 16.50 44.91 3.33
6232 7510 9.787435 AACAACAAATATACTAGGTTCTGTTGA 57.213 29.630 21.33 0.00 43.08 3.18
6233 7511 9.436957 ACAACAAATATACTAGGTTCTGTTGAG 57.563 33.333 21.33 9.12 43.08 3.02
6234 7512 8.883731 CAACAAATATACTAGGTTCTGTTGAGG 58.116 37.037 14.46 0.48 43.08 3.86
6235 7513 7.565680 ACAAATATACTAGGTTCTGTTGAGGG 58.434 38.462 0.00 0.00 0.00 4.30
6236 7514 5.810080 ATATACTAGGTTCTGTTGAGGGC 57.190 43.478 0.00 0.00 0.00 5.19
6237 7515 1.729586 ACTAGGTTCTGTTGAGGGCA 58.270 50.000 0.00 0.00 0.00 5.36
6238 7516 1.348036 ACTAGGTTCTGTTGAGGGCAC 59.652 52.381 0.00 0.00 0.00 5.01
6239 7517 1.347707 CTAGGTTCTGTTGAGGGCACA 59.652 52.381 0.00 0.00 0.00 4.57
6240 7518 0.773644 AGGTTCTGTTGAGGGCACAT 59.226 50.000 0.00 0.00 0.00 3.21
6241 7519 1.168714 GGTTCTGTTGAGGGCACATC 58.831 55.000 0.00 0.00 0.00 3.06
6242 7520 1.271597 GGTTCTGTTGAGGGCACATCT 60.272 52.381 0.00 0.00 0.00 2.90
6243 7521 2.079925 GTTCTGTTGAGGGCACATCTC 58.920 52.381 0.00 0.00 0.00 2.75
6244 7522 1.351076 TCTGTTGAGGGCACATCTCA 58.649 50.000 0.00 0.00 39.24 3.27
6245 7523 1.911357 TCTGTTGAGGGCACATCTCAT 59.089 47.619 0.00 0.00 40.46 2.90
6246 7524 2.093288 TCTGTTGAGGGCACATCTCATC 60.093 50.000 0.00 0.00 40.46 2.92
6247 7525 1.629861 TGTTGAGGGCACATCTCATCA 59.370 47.619 0.00 0.00 40.46 3.07
6248 7526 2.040145 TGTTGAGGGCACATCTCATCAA 59.960 45.455 0.00 0.00 40.46 2.57
6249 7527 2.681848 GTTGAGGGCACATCTCATCAAG 59.318 50.000 0.00 0.00 40.46 3.02
6250 7528 1.307097 GAGGGCACATCTCATCAAGC 58.693 55.000 0.00 0.00 0.00 4.01
6251 7529 0.106819 AGGGCACATCTCATCAAGCC 60.107 55.000 0.00 0.00 41.29 4.35
6252 7530 2.412605 GGCACATCTCATCAAGCCC 58.587 57.895 0.00 0.00 36.17 5.19
6253 7531 0.394762 GGCACATCTCATCAAGCCCA 60.395 55.000 0.00 0.00 36.17 5.36
6254 7532 1.466856 GCACATCTCATCAAGCCCAA 58.533 50.000 0.00 0.00 0.00 4.12
6255 7533 1.820519 GCACATCTCATCAAGCCCAAA 59.179 47.619 0.00 0.00 0.00 3.28
6256 7534 2.429610 GCACATCTCATCAAGCCCAAAT 59.570 45.455 0.00 0.00 0.00 2.32
6257 7535 3.633525 GCACATCTCATCAAGCCCAAATA 59.366 43.478 0.00 0.00 0.00 1.40
6258 7536 4.098349 GCACATCTCATCAAGCCCAAATAA 59.902 41.667 0.00 0.00 0.00 1.40
6259 7537 5.394443 GCACATCTCATCAAGCCCAAATAAA 60.394 40.000 0.00 0.00 0.00 1.40
6260 7538 6.038356 CACATCTCATCAAGCCCAAATAAAC 58.962 40.000 0.00 0.00 0.00 2.01
6261 7539 5.716228 ACATCTCATCAAGCCCAAATAAACA 59.284 36.000 0.00 0.00 0.00 2.83
6262 7540 6.211184 ACATCTCATCAAGCCCAAATAAACAA 59.789 34.615 0.00 0.00 0.00 2.83
6263 7541 6.662865 TCTCATCAAGCCCAAATAAACAAA 57.337 33.333 0.00 0.00 0.00 2.83
6264 7542 7.060383 TCTCATCAAGCCCAAATAAACAAAA 57.940 32.000 0.00 0.00 0.00 2.44
6265 7543 7.504403 TCTCATCAAGCCCAAATAAACAAAAA 58.496 30.769 0.00 0.00 0.00 1.94
6282 7560 3.306472 AAAAAGGCTGGTAACACTGGA 57.694 42.857 0.00 0.00 46.17 3.86
6283 7561 3.525800 AAAAGGCTGGTAACACTGGAT 57.474 42.857 0.00 0.00 46.17 3.41
6284 7562 4.650972 AAAAGGCTGGTAACACTGGATA 57.349 40.909 0.00 0.00 46.17 2.59
6285 7563 3.914426 AAGGCTGGTAACACTGGATAG 57.086 47.619 0.00 0.00 46.17 2.08
6286 7564 1.486726 AGGCTGGTAACACTGGATAGC 59.513 52.381 0.00 0.00 46.17 2.97
6287 7565 1.475213 GGCTGGTAACACTGGATAGCC 60.475 57.143 0.00 0.00 46.17 3.93
6288 7566 1.209504 GCTGGTAACACTGGATAGCCA 59.790 52.381 0.00 0.00 46.17 4.75
6289 7567 2.158755 GCTGGTAACACTGGATAGCCAT 60.159 50.000 0.00 0.00 46.17 4.40
6290 7568 3.470709 CTGGTAACACTGGATAGCCATG 58.529 50.000 0.00 4.01 46.17 3.66
6291 7569 2.222027 GGTAACACTGGATAGCCATGC 58.778 52.381 0.00 0.00 44.91 4.06
6292 7570 1.867233 GTAACACTGGATAGCCATGCG 59.133 52.381 0.00 0.00 44.91 4.73
6293 7571 1.097547 AACACTGGATAGCCATGCGC 61.098 55.000 0.00 0.00 44.91 6.09
6302 7580 4.147701 GCCATGCGCTACAGGAAT 57.852 55.556 9.73 0.00 29.21 3.01
6303 7581 2.408333 GCCATGCGCTACAGGAATT 58.592 52.632 9.73 0.00 29.21 2.17
6304 7582 1.593196 GCCATGCGCTACAGGAATTA 58.407 50.000 9.73 0.00 29.21 1.40
6305 7583 1.532868 GCCATGCGCTACAGGAATTAG 59.467 52.381 9.73 0.00 29.21 1.73
6306 7584 2.146342 CCATGCGCTACAGGAATTAGG 58.854 52.381 9.73 0.00 29.21 2.69
6307 7585 1.532868 CATGCGCTACAGGAATTAGGC 59.467 52.381 9.73 0.00 29.21 3.93
6308 7586 0.539518 TGCGCTACAGGAATTAGGCA 59.460 50.000 9.73 0.00 0.00 4.75
6309 7587 0.938008 GCGCTACAGGAATTAGGCAC 59.062 55.000 0.00 0.00 0.00 5.01
6310 7588 1.473434 GCGCTACAGGAATTAGGCACT 60.473 52.381 0.00 0.00 46.37 4.40
6311 7589 2.906354 CGCTACAGGAATTAGGCACTT 58.094 47.619 0.00 0.00 41.75 3.16
6312 7590 3.270877 CGCTACAGGAATTAGGCACTTT 58.729 45.455 0.00 0.00 41.75 2.66
6313 7591 3.063997 CGCTACAGGAATTAGGCACTTTG 59.936 47.826 0.00 0.00 41.75 2.77
6314 7592 3.181496 GCTACAGGAATTAGGCACTTTGC 60.181 47.826 0.00 0.00 44.08 3.68
6323 7601 3.286751 GCACTTTGCCGTCTGCCA 61.287 61.111 0.00 0.00 37.42 4.92
6324 7602 2.629656 GCACTTTGCCGTCTGCCAT 61.630 57.895 0.00 0.00 37.42 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 9.834628 CCGTATGTTGTAGTTTATTTGAAATGT 57.165 29.630 0.00 0.00 0.00 2.71
17 18 9.221933 ACATCCGTATGTTGTAGTTTATTTGAA 57.778 29.630 0.00 0.00 44.07 2.69
18 19 8.780846 ACATCCGTATGTTGTAGTTTATTTGA 57.219 30.769 0.00 0.00 44.07 2.69
62 63 4.390297 GGAGCAAAGTGAGTGAATCTACAC 59.610 45.833 0.00 0.00 40.60 2.90
63 64 4.563580 GGGAGCAAAGTGAGTGAATCTACA 60.564 45.833 0.00 0.00 0.00 2.74
64 65 3.935828 GGGAGCAAAGTGAGTGAATCTAC 59.064 47.826 0.00 0.00 0.00 2.59
65 66 3.840666 AGGGAGCAAAGTGAGTGAATCTA 59.159 43.478 0.00 0.00 0.00 1.98
66 67 2.641815 AGGGAGCAAAGTGAGTGAATCT 59.358 45.455 0.00 0.00 0.00 2.40
67 68 3.064900 AGGGAGCAAAGTGAGTGAATC 57.935 47.619 0.00 0.00 0.00 2.52
68 69 4.521146 CATAGGGAGCAAAGTGAGTGAAT 58.479 43.478 0.00 0.00 0.00 2.57
69 70 3.869912 GCATAGGGAGCAAAGTGAGTGAA 60.870 47.826 0.00 0.00 0.00 3.18
70 71 2.355108 GCATAGGGAGCAAAGTGAGTGA 60.355 50.000 0.00 0.00 0.00 3.41
71 72 2.012673 GCATAGGGAGCAAAGTGAGTG 58.987 52.381 0.00 0.00 0.00 3.51
72 73 1.630369 TGCATAGGGAGCAAAGTGAGT 59.370 47.619 0.00 0.00 39.39 3.41
73 74 2.286872 CTGCATAGGGAGCAAAGTGAG 58.713 52.381 0.00 0.00 42.17 3.51
74 75 1.630369 ACTGCATAGGGAGCAAAGTGA 59.370 47.619 0.00 0.00 42.17 3.41
75 76 2.012673 GACTGCATAGGGAGCAAAGTG 58.987 52.381 0.00 0.00 42.17 3.16
76 77 1.630369 TGACTGCATAGGGAGCAAAGT 59.370 47.619 0.00 0.00 42.17 2.66
77 78 2.408271 TGACTGCATAGGGAGCAAAG 57.592 50.000 0.00 0.00 42.17 2.77
78 79 3.370840 AATGACTGCATAGGGAGCAAA 57.629 42.857 0.00 0.00 42.17 3.68
79 80 3.370840 AAATGACTGCATAGGGAGCAA 57.629 42.857 0.00 0.00 42.17 3.91
80 81 4.712051 ATAAATGACTGCATAGGGAGCA 57.288 40.909 0.00 0.00 40.19 4.26
81 82 5.065914 TCAATAAATGACTGCATAGGGAGC 58.934 41.667 0.00 0.00 35.59 4.70
82 83 7.572523 TTTCAATAAATGACTGCATAGGGAG 57.427 36.000 0.00 0.00 37.92 4.30
83 84 9.812347 ATATTTCAATAAATGACTGCATAGGGA 57.188 29.630 0.00 0.00 37.92 4.20
116 117 9.440761 ACTCCATCTGTTCCTAAATATAAGTCT 57.559 33.333 0.00 0.00 0.00 3.24
162 163 5.018809 ACCTTTCTTTGCATGGTGATACAT 58.981 37.500 0.00 0.00 0.00 2.29
163 164 4.406456 ACCTTTCTTTGCATGGTGATACA 58.594 39.130 0.00 0.00 0.00 2.29
168 169 3.181477 TGTTCACCTTTCTTTGCATGGTG 60.181 43.478 0.00 0.00 46.71 4.17
169 170 3.030291 TGTTCACCTTTCTTTGCATGGT 58.970 40.909 0.00 0.00 0.00 3.55
170 171 3.181477 TGTGTTCACCTTTCTTTGCATGG 60.181 43.478 0.00 0.00 0.00 3.66
171 172 4.044336 TGTGTTCACCTTTCTTTGCATG 57.956 40.909 0.00 0.00 0.00 4.06
172 173 4.099881 ACATGTGTTCACCTTTCTTTGCAT 59.900 37.500 0.00 0.00 0.00 3.96
173 174 3.446873 ACATGTGTTCACCTTTCTTTGCA 59.553 39.130 0.00 0.00 0.00 4.08
174 175 4.045636 ACATGTGTTCACCTTTCTTTGC 57.954 40.909 0.00 0.00 0.00 3.68
175 176 6.966435 AAAACATGTGTTCACCTTTCTTTG 57.034 33.333 0.00 0.00 37.25 2.77
176 177 8.062065 TCTAAAACATGTGTTCACCTTTCTTT 57.938 30.769 4.02 0.00 37.25 2.52
177 178 7.639113 TCTAAAACATGTGTTCACCTTTCTT 57.361 32.000 4.02 0.00 37.25 2.52
178 179 7.339466 AGTTCTAAAACATGTGTTCACCTTTCT 59.661 33.333 4.02 0.00 37.25 2.52
179 180 7.480810 AGTTCTAAAACATGTGTTCACCTTTC 58.519 34.615 4.02 0.00 37.25 2.62
180 181 7.404671 AGTTCTAAAACATGTGTTCACCTTT 57.595 32.000 4.02 0.00 37.25 3.11
181 182 6.039382 GGAGTTCTAAAACATGTGTTCACCTT 59.961 38.462 4.02 0.00 37.25 3.50
182 183 5.531287 GGAGTTCTAAAACATGTGTTCACCT 59.469 40.000 4.02 0.00 37.25 4.00
187 188 7.346751 ACAATGGAGTTCTAAAACATGTGTT 57.653 32.000 6.49 6.49 40.50 3.32
188 189 6.959639 ACAATGGAGTTCTAAAACATGTGT 57.040 33.333 0.00 0.00 37.88 3.72
376 384 1.443802 CGGTTTCTGGCCTTCTTCTC 58.556 55.000 3.32 0.00 0.00 2.87
447 455 2.202892 GAGATTCACCGGCGGTCC 60.203 66.667 31.82 18.06 31.02 4.46
448 456 2.202892 GGAGATTCACCGGCGGTC 60.203 66.667 31.82 18.52 31.02 4.79
449 457 3.782443 GGGAGATTCACCGGCGGT 61.782 66.667 28.83 28.83 35.62 5.68
987 995 1.216427 GATGGGAGAAAGGATGGGCTT 59.784 52.381 0.00 0.00 0.00 4.35
988 996 0.849417 GATGGGAGAAAGGATGGGCT 59.151 55.000 0.00 0.00 0.00 5.19
989 997 0.178978 GGATGGGAGAAAGGATGGGC 60.179 60.000 0.00 0.00 0.00 5.36
990 998 1.225373 TGGATGGGAGAAAGGATGGG 58.775 55.000 0.00 0.00 0.00 4.00
997 1005 1.146041 CGCCGATGGATGGGAGAAA 59.854 57.895 0.00 0.00 0.00 2.52
1001 1009 3.546543 GACCGCCGATGGATGGGA 61.547 66.667 0.00 0.00 0.00 4.37
1065 1086 0.105760 TCAGAGAGGATGGAGGGAGC 60.106 60.000 0.00 0.00 0.00 4.70
1067 1088 2.687297 CAATCAGAGAGGATGGAGGGA 58.313 52.381 0.00 0.00 0.00 4.20
1069 1090 1.072015 GGCAATCAGAGAGGATGGAGG 59.928 57.143 0.00 0.00 0.00 4.30
1070 1091 1.072015 GGGCAATCAGAGAGGATGGAG 59.928 57.143 0.00 0.00 0.00 3.86
1317 1346 1.228657 AAGAGAAAAGGCGTGCGGAC 61.229 55.000 0.00 0.00 0.00 4.79
1318 1347 0.949105 GAAGAGAAAAGGCGTGCGGA 60.949 55.000 0.00 0.00 0.00 5.54
1319 1348 0.951040 AGAAGAGAAAAGGCGTGCGG 60.951 55.000 0.00 0.00 0.00 5.69
1320 1349 0.164647 CAGAAGAGAAAAGGCGTGCG 59.835 55.000 0.00 0.00 0.00 5.34
1321 1350 0.110010 GCAGAAGAGAAAAGGCGTGC 60.110 55.000 0.00 0.00 0.00 5.34
1322 1351 1.196354 CTGCAGAAGAGAAAAGGCGTG 59.804 52.381 8.42 0.00 0.00 5.34
1341 1370 0.319813 GGACGCAAAATTGGCTTGCT 60.320 50.000 10.69 0.16 45.64 3.91
1360 1523 2.158449 CACGTAGAGCAGAAAAGCAAGG 59.842 50.000 0.00 0.00 36.85 3.61
1624 1797 2.958578 AAGTTGGTGGTGGAGTGGCG 62.959 60.000 0.00 0.00 0.00 5.69
1666 1844 7.279750 ACAACATTTCGTTAAGTATTTGGGT 57.720 32.000 0.00 0.00 35.52 4.51
1850 2064 2.028385 AGTACACAACTAAGAAGGGGCG 60.028 50.000 0.00 0.00 36.36 6.13
1998 2213 3.857093 GCGGTTAAATGTAAATGGCACTG 59.143 43.478 0.00 0.00 0.00 3.66
2047 2263 7.428282 TCTTCTGAGATTAGCTACGTCATAG 57.572 40.000 0.00 0.00 0.00 2.23
2054 2270 7.308951 GGTCTGGTATCTTCTGAGATTAGCTAC 60.309 44.444 0.00 0.00 42.55 3.58
2364 2594 6.208797 AGAGGATTGATTTGTCATGGCATATG 59.791 38.462 8.04 0.00 0.00 1.78
2379 2609 8.380742 TCTAAAACAGTAGGAAGAGGATTGAT 57.619 34.615 0.00 0.00 0.00 2.57
2485 2717 8.777865 TGCAATATAATGCTTCCTAGACATAC 57.222 34.615 13.73 0.00 46.54 2.39
2763 2999 6.992123 AGATCCTAACGCATATGTGAATTGAA 59.008 34.615 22.73 4.22 0.00 2.69
2889 3156 4.098807 TGACCATAGCTGTTAGCATCGTTA 59.901 41.667 0.00 0.00 45.56 3.18
2919 3186 5.278266 CCGTGAATCTTAAAGCAGGAAACAA 60.278 40.000 0.00 0.00 0.00 2.83
2954 3222 4.330250 CACTGAAGTCTGGGAATGAATGT 58.670 43.478 0.00 0.00 0.00 2.71
3042 3312 9.603298 CATGAGAATGTATTCAAATATTGACGG 57.397 33.333 7.30 0.00 39.87 4.79
3235 3506 2.298729 TGCCTTGCAAACCATAACTTCC 59.701 45.455 0.00 0.00 34.76 3.46
3236 3507 3.578688 CTGCCTTGCAAACCATAACTTC 58.421 45.455 0.00 0.00 38.41 3.01
3545 3920 4.393371 GGCTCACCTTCTCTTCAATGTAAC 59.607 45.833 0.00 0.00 0.00 2.50
3546 3921 4.041567 TGGCTCACCTTCTCTTCAATGTAA 59.958 41.667 0.00 0.00 36.63 2.41
3547 3922 3.582647 TGGCTCACCTTCTCTTCAATGTA 59.417 43.478 0.00 0.00 36.63 2.29
3550 4732 3.618351 CATGGCTCACCTTCTCTTCAAT 58.382 45.455 0.00 0.00 36.63 2.57
3569 4752 1.292223 CGACACGTTCCTCACCCAT 59.708 57.895 0.00 0.00 0.00 4.00
3613 4796 5.390613 CGTCTGTTTTGTCTTTGTTTCAGT 58.609 37.500 0.00 0.00 0.00 3.41
3617 4800 4.167554 TGCGTCTGTTTTGTCTTTGTTT 57.832 36.364 0.00 0.00 0.00 2.83
3632 4815 3.861840 TGCTTCTATAAAGCTTGCGTCT 58.138 40.909 0.00 0.00 43.38 4.18
3643 4826 6.183360 CCGCCTAACAAATGTTGCTTCTATAA 60.183 38.462 8.99 0.00 38.90 0.98
3646 4829 3.438781 CCGCCTAACAAATGTTGCTTCTA 59.561 43.478 8.99 0.00 38.90 2.10
3658 4841 0.543410 TCTGAGGGACCGCCTAACAA 60.543 55.000 0.00 0.00 0.00 2.83
3659 4842 0.970937 CTCTGAGGGACCGCCTAACA 60.971 60.000 0.00 0.00 0.00 2.41
3660 4843 0.971447 ACTCTGAGGGACCGCCTAAC 60.971 60.000 9.85 0.00 0.00 2.34
3670 4853 1.600023 CCTACTCGCTACTCTGAGGG 58.400 60.000 9.85 2.77 36.53 4.30
3673 4856 0.255033 TGGCCTACTCGCTACTCTGA 59.745 55.000 3.32 0.00 0.00 3.27
3688 4871 0.895559 CACCTTTTCTCCCAGTGGCC 60.896 60.000 2.61 0.00 0.00 5.36
3693 4876 0.478507 ACCCACACCTTTTCTCCCAG 59.521 55.000 0.00 0.00 0.00 4.45
3732 4956 0.898326 TAGACGCTTGACTGCTCCCA 60.898 55.000 0.00 0.00 0.00 4.37
3741 4965 1.545841 TCTTCTGGCTAGACGCTTGA 58.454 50.000 0.00 0.00 39.13 3.02
3834 5062 2.434702 CCTCACAACCCCTCATACCTAC 59.565 54.545 0.00 0.00 0.00 3.18
3991 5223 0.965439 TATGCACACCCAAAACTGCC 59.035 50.000 0.00 0.00 0.00 4.85
4057 5289 1.977293 GATCCTTCTTCTGGGCCGCT 61.977 60.000 0.00 0.00 0.00 5.52
4079 5311 6.899089 TCATCAAAAGGTTAGATGCTATCCA 58.101 36.000 0.00 0.00 39.12 3.41
4087 5319 7.559170 CCCAAGAAGATCATCAAAAGGTTAGAT 59.441 37.037 0.10 0.00 0.00 1.98
4131 5363 0.890683 CACCCTTGCCAATCACTTCC 59.109 55.000 0.00 0.00 0.00 3.46
4139 5375 1.371183 CTCTCGACACCCTTGCCAA 59.629 57.895 0.00 0.00 0.00 4.52
4149 5385 4.382291 GCTTATCTCCTCTACTCTCGACA 58.618 47.826 0.00 0.00 0.00 4.35
4273 5509 1.460689 CGGCCTACCCCTATCCCAA 60.461 63.158 0.00 0.00 0.00 4.12
4337 5573 3.009723 CCATCACTAGCCAAAACATCGT 58.990 45.455 0.00 0.00 0.00 3.73
4390 5626 5.880901 ACTGGTCTTAACATCAACTTCCAT 58.119 37.500 0.00 0.00 0.00 3.41
4422 5658 7.147655 CCCTCAAAGATATCCTAGACAAGTTCA 60.148 40.741 0.00 0.00 0.00 3.18
4473 5709 3.262420 GACGACACACTAATCATTGCCT 58.738 45.455 0.00 0.00 0.00 4.75
4596 5832 7.071321 CACTATCCCCCTACCTATTCATAATCC 59.929 44.444 0.00 0.00 0.00 3.01
4621 5857 1.461268 TCTCCAGCAAGGTGACCCA 60.461 57.895 0.00 0.00 35.06 4.51
5349 6588 8.805175 TCAAATGAATTGTAATTGTCCTCATGT 58.195 29.630 0.00 0.00 40.11 3.21
5396 6635 4.157289 TGCTACTACTACCTAATATGGCGC 59.843 45.833 0.00 0.00 0.00 6.53
5441 6680 5.374898 GCTCGTACAAGTCATCAAGAAAAC 58.625 41.667 0.00 0.00 0.00 2.43
5448 6687 2.560981 TCAAGGCTCGTACAAGTCATCA 59.439 45.455 0.00 0.00 0.00 3.07
5480 6719 6.486657 AGCGTTGAATGCACTATATAAACCAT 59.513 34.615 12.41 0.00 31.07 3.55
5512 6751 4.891756 ACAATTAGAAAGGGCCTCATCATG 59.108 41.667 6.46 9.17 0.00 3.07
5520 6759 3.366052 TCTGGACAATTAGAAAGGGCC 57.634 47.619 0.00 0.00 0.00 5.80
5694 6965 7.657354 TCATTTCCCAACAGATAGATAACATCG 59.343 37.037 0.00 0.00 0.00 3.84
5697 6968 8.328758 ACTTCATTTCCCAACAGATAGATAACA 58.671 33.333 0.00 0.00 0.00 2.41
5707 6978 4.761739 TGCTCTTACTTCATTTCCCAACAG 59.238 41.667 0.00 0.00 0.00 3.16
5723 6994 8.154856 ACAGTAACTCATAAAAGGTTGCTCTTA 58.845 33.333 0.00 0.00 34.65 2.10
5816 7091 2.304180 CAGTTCACTCAAGGGAGGTGAT 59.696 50.000 0.00 0.00 45.81 3.06
5818 7093 1.694150 TCAGTTCACTCAAGGGAGGTG 59.306 52.381 0.00 0.00 45.81 4.00
5823 7098 3.490348 ACCATTTCAGTTCACTCAAGGG 58.510 45.455 0.00 0.00 0.00 3.95
5838 7113 7.667635 TGAAAAAGGAACAAGGAAAAACCATTT 59.332 29.630 0.00 0.00 42.04 2.32
5939 7214 4.799715 TTTCCCTTCCAAACAAGACCTA 57.200 40.909 0.00 0.00 0.00 3.08
5979 7254 7.315890 GCAATCAAATAAGTAGACTTTGGCTT 58.684 34.615 0.00 0.00 37.40 4.35
5987 7262 4.875544 TGGCGCAATCAAATAAGTAGAC 57.124 40.909 10.83 0.00 0.00 2.59
6094 7372 8.012957 TGGTAAATAAGCAAAGGAGTTTTCAA 57.987 30.769 0.00 0.00 31.13 2.69
6095 7373 7.589958 TGGTAAATAAGCAAAGGAGTTTTCA 57.410 32.000 0.00 0.00 31.13 2.69
6106 7384 6.484977 CCAAAGCCTTTTTGGTAAATAAGCAA 59.515 34.615 9.88 0.00 42.92 3.91
6107 7385 5.994668 CCAAAGCCTTTTTGGTAAATAAGCA 59.005 36.000 9.88 0.00 42.92 3.91
6108 7386 6.480524 CCAAAGCCTTTTTGGTAAATAAGC 57.519 37.500 9.88 0.00 42.92 3.09
6125 7403 3.885724 TTTATAAAGCAGGGCCAAAGC 57.114 42.857 6.18 6.95 38.76 3.51
6138 7416 6.586844 GTGTGGCGGTTTGCTTTATTTATAAA 59.413 34.615 0.00 0.00 45.43 1.40
6139 7417 6.094061 GTGTGGCGGTTTGCTTTATTTATAA 58.906 36.000 0.00 0.00 45.43 0.98
6140 7418 5.183331 TGTGTGGCGGTTTGCTTTATTTATA 59.817 36.000 0.00 0.00 45.43 0.98
6141 7419 4.021894 TGTGTGGCGGTTTGCTTTATTTAT 60.022 37.500 0.00 0.00 45.43 1.40
6142 7420 3.318275 TGTGTGGCGGTTTGCTTTATTTA 59.682 39.130 0.00 0.00 45.43 1.40
6143 7421 2.101582 TGTGTGGCGGTTTGCTTTATTT 59.898 40.909 0.00 0.00 45.43 1.40
6144 7422 1.683917 TGTGTGGCGGTTTGCTTTATT 59.316 42.857 0.00 0.00 45.43 1.40
6145 7423 1.000717 GTGTGTGGCGGTTTGCTTTAT 60.001 47.619 0.00 0.00 45.43 1.40
6146 7424 0.382515 GTGTGTGGCGGTTTGCTTTA 59.617 50.000 0.00 0.00 45.43 1.85
6147 7425 1.140804 GTGTGTGGCGGTTTGCTTT 59.859 52.632 0.00 0.00 45.43 3.51
6148 7426 2.781158 GGTGTGTGGCGGTTTGCTT 61.781 57.895 0.00 0.00 45.43 3.91
6149 7427 3.216292 GGTGTGTGGCGGTTTGCT 61.216 61.111 0.00 0.00 45.43 3.91
6150 7428 3.522731 TGGTGTGTGGCGGTTTGC 61.523 61.111 0.00 0.00 45.38 3.68
6151 7429 2.411290 GTGGTGTGTGGCGGTTTG 59.589 61.111 0.00 0.00 0.00 2.93
6152 7430 2.831284 GGTGGTGTGTGGCGGTTT 60.831 61.111 0.00 0.00 0.00 3.27
6153 7431 3.646942 TTGGTGGTGTGTGGCGGTT 62.647 57.895 0.00 0.00 0.00 4.44
6154 7432 4.116585 TTGGTGGTGTGTGGCGGT 62.117 61.111 0.00 0.00 0.00 5.68
6155 7433 2.668185 TACTTGGTGGTGTGTGGCGG 62.668 60.000 0.00 0.00 0.00 6.13
6156 7434 1.227704 TACTTGGTGGTGTGTGGCG 60.228 57.895 0.00 0.00 0.00 5.69
6157 7435 1.170290 GGTACTTGGTGGTGTGTGGC 61.170 60.000 0.00 0.00 0.00 5.01
6158 7436 0.181587 TGGTACTTGGTGGTGTGTGG 59.818 55.000 0.00 0.00 0.00 4.17
6159 7437 1.305201 GTGGTACTTGGTGGTGTGTG 58.695 55.000 0.00 0.00 0.00 3.82
6160 7438 0.913205 TGTGGTACTTGGTGGTGTGT 59.087 50.000 0.00 0.00 0.00 3.72
6161 7439 2.045561 TTGTGGTACTTGGTGGTGTG 57.954 50.000 0.00 0.00 0.00 3.82
6162 7440 2.808933 CGATTGTGGTACTTGGTGGTGT 60.809 50.000 0.00 0.00 0.00 4.16
6163 7441 1.804151 CGATTGTGGTACTTGGTGGTG 59.196 52.381 0.00 0.00 0.00 4.17
6164 7442 1.695242 TCGATTGTGGTACTTGGTGGT 59.305 47.619 0.00 0.00 0.00 4.16
6165 7443 2.465860 TCGATTGTGGTACTTGGTGG 57.534 50.000 0.00 0.00 0.00 4.61
6166 7444 4.253685 AGATTCGATTGTGGTACTTGGTG 58.746 43.478 0.00 0.00 0.00 4.17
6167 7445 4.553330 AGATTCGATTGTGGTACTTGGT 57.447 40.909 0.00 0.00 0.00 3.67
6168 7446 5.416083 TGTAGATTCGATTGTGGTACTTGG 58.584 41.667 0.00 0.00 0.00 3.61
6169 7447 6.367695 TGTTGTAGATTCGATTGTGGTACTTG 59.632 38.462 0.00 0.00 0.00 3.16
6170 7448 6.367969 GTGTTGTAGATTCGATTGTGGTACTT 59.632 38.462 0.00 0.00 0.00 2.24
6171 7449 5.867716 GTGTTGTAGATTCGATTGTGGTACT 59.132 40.000 0.00 0.00 0.00 2.73
6172 7450 5.636121 TGTGTTGTAGATTCGATTGTGGTAC 59.364 40.000 0.00 0.00 0.00 3.34
6173 7451 5.636121 GTGTGTTGTAGATTCGATTGTGGTA 59.364 40.000 0.00 0.00 0.00 3.25
6174 7452 4.451096 GTGTGTTGTAGATTCGATTGTGGT 59.549 41.667 0.00 0.00 0.00 4.16
6175 7453 4.450757 TGTGTGTTGTAGATTCGATTGTGG 59.549 41.667 0.00 0.00 0.00 4.17
6176 7454 5.050431 TGTGTGTGTTGTAGATTCGATTGTG 60.050 40.000 0.00 0.00 0.00 3.33
6177 7455 5.050363 GTGTGTGTGTTGTAGATTCGATTGT 60.050 40.000 0.00 0.00 0.00 2.71
6178 7456 5.050431 TGTGTGTGTGTTGTAGATTCGATTG 60.050 40.000 0.00 0.00 0.00 2.67
6179 7457 5.050363 GTGTGTGTGTGTTGTAGATTCGATT 60.050 40.000 0.00 0.00 0.00 3.34
6180 7458 4.447724 GTGTGTGTGTGTTGTAGATTCGAT 59.552 41.667 0.00 0.00 0.00 3.59
6181 7459 3.799963 GTGTGTGTGTGTTGTAGATTCGA 59.200 43.478 0.00 0.00 0.00 3.71
6182 7460 3.553917 TGTGTGTGTGTGTTGTAGATTCG 59.446 43.478 0.00 0.00 0.00 3.34
6183 7461 4.331443 TGTGTGTGTGTGTGTTGTAGATTC 59.669 41.667 0.00 0.00 0.00 2.52
6184 7462 4.257731 TGTGTGTGTGTGTGTTGTAGATT 58.742 39.130 0.00 0.00 0.00 2.40
6185 7463 3.867857 TGTGTGTGTGTGTGTTGTAGAT 58.132 40.909 0.00 0.00 0.00 1.98
6186 7464 3.320673 TGTGTGTGTGTGTGTTGTAGA 57.679 42.857 0.00 0.00 0.00 2.59
6187 7465 3.187432 TGTTGTGTGTGTGTGTGTTGTAG 59.813 43.478 0.00 0.00 0.00 2.74
6188 7466 3.139077 TGTTGTGTGTGTGTGTGTTGTA 58.861 40.909 0.00 0.00 0.00 2.41
6189 7467 1.950216 TGTTGTGTGTGTGTGTGTTGT 59.050 42.857 0.00 0.00 0.00 3.32
6190 7468 2.695613 TGTTGTGTGTGTGTGTGTTG 57.304 45.000 0.00 0.00 0.00 3.33
6191 7469 2.359214 TGTTGTTGTGTGTGTGTGTGTT 59.641 40.909 0.00 0.00 0.00 3.32
6192 7470 1.950216 TGTTGTTGTGTGTGTGTGTGT 59.050 42.857 0.00 0.00 0.00 3.72
6193 7471 2.695613 TGTTGTTGTGTGTGTGTGTG 57.304 45.000 0.00 0.00 0.00 3.82
6194 7472 3.717400 TTTGTTGTTGTGTGTGTGTGT 57.283 38.095 0.00 0.00 0.00 3.72
6195 7473 7.192913 AGTATATTTGTTGTTGTGTGTGTGTG 58.807 34.615 0.00 0.00 0.00 3.82
6196 7474 7.328277 AGTATATTTGTTGTTGTGTGTGTGT 57.672 32.000 0.00 0.00 0.00 3.72
6197 7475 8.015087 CCTAGTATATTTGTTGTTGTGTGTGTG 58.985 37.037 0.00 0.00 0.00 3.82
6198 7476 7.717875 ACCTAGTATATTTGTTGTTGTGTGTGT 59.282 33.333 0.00 0.00 0.00 3.72
6199 7477 8.094798 ACCTAGTATATTTGTTGTTGTGTGTG 57.905 34.615 0.00 0.00 0.00 3.82
6200 7478 8.685838 AACCTAGTATATTTGTTGTTGTGTGT 57.314 30.769 0.00 0.00 0.00 3.72
6201 7479 8.999431 AGAACCTAGTATATTTGTTGTTGTGTG 58.001 33.333 0.00 0.00 0.00 3.82
6202 7480 8.999431 CAGAACCTAGTATATTTGTTGTTGTGT 58.001 33.333 0.00 0.00 0.00 3.72
6203 7481 8.999431 ACAGAACCTAGTATATTTGTTGTTGTG 58.001 33.333 0.00 0.00 33.52 3.33
6204 7482 9.569122 AACAGAACCTAGTATATTTGTTGTTGT 57.431 29.630 0.00 0.00 0.00 3.32
6205 7483 9.825972 CAACAGAACCTAGTATATTTGTTGTTG 57.174 33.333 6.00 0.00 39.30 3.33
6206 7484 9.787435 TCAACAGAACCTAGTATATTTGTTGTT 57.213 29.630 12.10 0.00 42.67 2.83
6207 7485 9.436957 CTCAACAGAACCTAGTATATTTGTTGT 57.563 33.333 12.10 0.00 42.67 3.32
6208 7486 8.883731 CCTCAACAGAACCTAGTATATTTGTTG 58.116 37.037 7.49 7.49 43.16 3.33
6209 7487 8.047310 CCCTCAACAGAACCTAGTATATTTGTT 58.953 37.037 0.00 0.00 0.00 2.83
6210 7488 7.565680 CCCTCAACAGAACCTAGTATATTTGT 58.434 38.462 0.00 0.00 0.00 2.83
6211 7489 6.483640 GCCCTCAACAGAACCTAGTATATTTG 59.516 42.308 0.00 0.00 0.00 2.32
6212 7490 6.157994 TGCCCTCAACAGAACCTAGTATATTT 59.842 38.462 0.00 0.00 0.00 1.40
6213 7491 5.665812 TGCCCTCAACAGAACCTAGTATATT 59.334 40.000 0.00 0.00 0.00 1.28
6214 7492 5.070580 GTGCCCTCAACAGAACCTAGTATAT 59.929 44.000 0.00 0.00 0.00 0.86
6215 7493 4.404715 GTGCCCTCAACAGAACCTAGTATA 59.595 45.833 0.00 0.00 0.00 1.47
6216 7494 3.197983 GTGCCCTCAACAGAACCTAGTAT 59.802 47.826 0.00 0.00 0.00 2.12
6217 7495 2.565834 GTGCCCTCAACAGAACCTAGTA 59.434 50.000 0.00 0.00 0.00 1.82
6218 7496 1.348036 GTGCCCTCAACAGAACCTAGT 59.652 52.381 0.00 0.00 0.00 2.57
6219 7497 1.347707 TGTGCCCTCAACAGAACCTAG 59.652 52.381 0.00 0.00 0.00 3.02
6220 7498 1.429930 TGTGCCCTCAACAGAACCTA 58.570 50.000 0.00 0.00 0.00 3.08
6221 7499 0.773644 ATGTGCCCTCAACAGAACCT 59.226 50.000 0.00 0.00 0.00 3.50
6222 7500 1.168714 GATGTGCCCTCAACAGAACC 58.831 55.000 0.00 0.00 0.00 3.62
6223 7501 2.079925 GAGATGTGCCCTCAACAGAAC 58.920 52.381 0.00 0.00 0.00 3.01
6224 7502 1.699083 TGAGATGTGCCCTCAACAGAA 59.301 47.619 0.00 0.00 37.68 3.02
6225 7503 1.351076 TGAGATGTGCCCTCAACAGA 58.649 50.000 0.00 0.00 37.68 3.41
6226 7504 2.286872 GATGAGATGTGCCCTCAACAG 58.713 52.381 0.00 0.00 43.07 3.16
6227 7505 1.629861 TGATGAGATGTGCCCTCAACA 59.370 47.619 0.00 0.00 43.07 3.33
6228 7506 2.408271 TGATGAGATGTGCCCTCAAC 57.592 50.000 0.00 0.00 43.07 3.18
6229 7507 2.942752 GCTTGATGAGATGTGCCCTCAA 60.943 50.000 0.00 0.00 43.07 3.02
6230 7508 1.407851 GCTTGATGAGATGTGCCCTCA 60.408 52.381 0.00 0.00 43.84 3.86
6231 7509 1.307097 GCTTGATGAGATGTGCCCTC 58.693 55.000 0.00 0.00 0.00 4.30
6232 7510 0.106819 GGCTTGATGAGATGTGCCCT 60.107 55.000 0.00 0.00 34.81 5.19
6233 7511 2.412605 GGCTTGATGAGATGTGCCC 58.587 57.895 0.00 0.00 34.81 5.36
6234 7512 0.394762 TGGGCTTGATGAGATGTGCC 60.395 55.000 0.00 0.00 39.61 5.01
6235 7513 1.466856 TTGGGCTTGATGAGATGTGC 58.533 50.000 0.00 0.00 0.00 4.57
6236 7514 5.840243 TTATTTGGGCTTGATGAGATGTG 57.160 39.130 0.00 0.00 0.00 3.21
6237 7515 5.716228 TGTTTATTTGGGCTTGATGAGATGT 59.284 36.000 0.00 0.00 0.00 3.06
6238 7516 6.211587 TGTTTATTTGGGCTTGATGAGATG 57.788 37.500 0.00 0.00 0.00 2.90
6239 7517 6.855763 TTGTTTATTTGGGCTTGATGAGAT 57.144 33.333 0.00 0.00 0.00 2.75
6240 7518 6.662865 TTTGTTTATTTGGGCTTGATGAGA 57.337 33.333 0.00 0.00 0.00 3.27
6241 7519 7.727331 TTTTTGTTTATTTGGGCTTGATGAG 57.273 32.000 0.00 0.00 0.00 2.90
6262 7540 3.306472 TCCAGTGTTACCAGCCTTTTT 57.694 42.857 0.00 0.00 0.00 1.94
6263 7541 3.525800 ATCCAGTGTTACCAGCCTTTT 57.474 42.857 0.00 0.00 0.00 2.27
6264 7542 3.622455 GCTATCCAGTGTTACCAGCCTTT 60.622 47.826 0.00 0.00 0.00 3.11
6265 7543 2.092914 GCTATCCAGTGTTACCAGCCTT 60.093 50.000 0.00 0.00 0.00 4.35
6266 7544 1.486726 GCTATCCAGTGTTACCAGCCT 59.513 52.381 0.00 0.00 0.00 4.58
6267 7545 1.475213 GGCTATCCAGTGTTACCAGCC 60.475 57.143 0.00 0.00 40.22 4.85
6268 7546 1.209504 TGGCTATCCAGTGTTACCAGC 59.790 52.381 0.00 0.00 37.47 4.85
6285 7563 1.532868 CTAATTCCTGTAGCGCATGGC 59.467 52.381 11.47 0.00 44.05 4.40
6286 7564 2.146342 CCTAATTCCTGTAGCGCATGG 58.854 52.381 11.47 5.87 0.00 3.66
6287 7565 1.532868 GCCTAATTCCTGTAGCGCATG 59.467 52.381 11.47 0.00 0.00 4.06
6288 7566 1.140852 TGCCTAATTCCTGTAGCGCAT 59.859 47.619 11.47 0.00 0.00 4.73
6289 7567 0.539518 TGCCTAATTCCTGTAGCGCA 59.460 50.000 11.47 0.00 0.00 6.09
6290 7568 0.938008 GTGCCTAATTCCTGTAGCGC 59.062 55.000 0.00 0.00 0.00 5.92
6291 7569 2.604046 AGTGCCTAATTCCTGTAGCG 57.396 50.000 0.00 0.00 0.00 4.26
6292 7570 3.181496 GCAAAGTGCCTAATTCCTGTAGC 60.181 47.826 0.00 0.00 37.42 3.58
6293 7571 4.622701 GCAAAGTGCCTAATTCCTGTAG 57.377 45.455 0.00 0.00 37.42 2.74
6306 7584 3.286751 TGGCAGACGGCAAAGTGC 61.287 61.111 0.00 0.00 46.20 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.