Multiple sequence alignment - TraesCS5A01G161400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G161400 chr5A 100.000 3800 0 0 1 3800 343595733 343599532 0.000000e+00 7018
1 TraesCS5A01G161400 chr5A 77.485 835 145 30 1 820 203428122 203427316 9.620000e-126 460
2 TraesCS5A01G161400 chr5D 93.303 2598 121 28 451 3033 258831617 258834176 0.000000e+00 3784
3 TraesCS5A01G161400 chr5D 89.556 450 40 4 1 447 258827880 258828325 7.130000e-157 564
4 TraesCS5A01G161400 chr5D 87.500 472 31 7 3081 3546 258834182 258834631 1.560000e-143 520
5 TraesCS5A01G161400 chr5D 82.077 491 58 20 1 482 98226114 98226583 3.560000e-105 392
6 TraesCS5A01G161400 chr5D 86.567 335 38 6 1 331 44485077 44484746 2.790000e-96 363
7 TraesCS5A01G161400 chr5D 78.755 466 72 21 331 782 29643185 29643637 1.730000e-73 287
8 TraesCS5A01G161400 chr5B 95.171 2195 91 8 844 3033 292966532 292968716 0.000000e+00 3452
9 TraesCS5A01G161400 chr5B 86.957 483 35 6 3081 3557 292968722 292969182 5.630000e-143 518
10 TraesCS5A01G161400 chr5B 77.033 418 71 19 440 849 375131708 375131308 2.300000e-52 217
11 TraesCS5A01G161400 chr4B 80.961 541 88 13 323 855 664972865 664972332 7.590000e-112 414
12 TraesCS5A01G161400 chr4B 80.591 541 90 13 323 855 664942112 664941579 1.640000e-108 403
13 TraesCS5A01G161400 chr4B 80.222 541 93 12 323 855 665103579 665103045 9.890000e-106 394
14 TraesCS5A01G161400 chr4B 80.038 526 92 11 323 840 664998735 664998215 9.960000e-101 377
15 TraesCS5A01G161400 chr6B 87.209 344 35 8 1 339 157112695 157113034 2.140000e-102 383
16 TraesCS5A01G161400 chr3D 87.425 334 36 5 1 331 56437696 56438026 2.770000e-101 379
17 TraesCS5A01G161400 chr2D 86.826 334 38 5 1 331 139747947 139747617 6.000000e-98 368
18 TraesCS5A01G161400 chr2D 86.377 345 37 9 1 339 542880149 542879809 6.000000e-98 368
19 TraesCS5A01G161400 chr2D 78.158 380 70 12 475 847 585420905 585421278 2.950000e-56 230
20 TraesCS5A01G161400 chr7D 85.928 334 41 5 1 331 426574469 426574799 6.040000e-93 351
21 TraesCS5A01G161400 chr2B 79.494 356 64 9 491 840 154851020 154851372 1.050000e-60 244
22 TraesCS5A01G161400 chr4A 78.351 388 69 15 466 844 168818853 168819234 1.760000e-58 237


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G161400 chr5A 343595733 343599532 3799 False 7018.000000 7018 100.000000 1 3800 1 chr5A.!!$F1 3799
1 TraesCS5A01G161400 chr5A 203427316 203428122 806 True 460.000000 460 77.485000 1 820 1 chr5A.!!$R1 819
2 TraesCS5A01G161400 chr5D 258827880 258834631 6751 False 1622.666667 3784 90.119667 1 3546 3 chr5D.!!$F3 3545
3 TraesCS5A01G161400 chr5B 292966532 292969182 2650 False 1985.000000 3452 91.064000 844 3557 2 chr5B.!!$F1 2713
4 TraesCS5A01G161400 chr4B 664972332 664972865 533 True 414.000000 414 80.961000 323 855 1 chr4B.!!$R2 532
5 TraesCS5A01G161400 chr4B 664941579 664942112 533 True 403.000000 403 80.591000 323 855 1 chr4B.!!$R1 532
6 TraesCS5A01G161400 chr4B 665103045 665103579 534 True 394.000000 394 80.222000 323 855 1 chr4B.!!$R4 532
7 TraesCS5A01G161400 chr4B 664998215 664998735 520 True 377.000000 377 80.038000 323 840 1 chr4B.!!$R3 517

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
71 72 0.108585 AAGATCGCCACACCAACACT 59.891 50.0 0.0 0.0 0.0 3.55 F
1561 4872 0.957888 GCAAGCTCTCAGTTGGGTCC 60.958 60.0 0.0 0.0 0.0 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1612 4923 0.326595 TGACAGAGAGCTCCTCGAGT 59.673 55.0 10.93 11.1 46.49 4.18 R
3422 6743 0.909610 CTCCAGGGGAGCCAACACTA 60.910 60.0 0.00 0.0 43.29 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 4.703379 TGCCCAACCAATCTGAAAAATT 57.297 36.364 0.00 0.00 0.00 1.82
32 33 3.679502 GCCCAACCAATCTGAAAAATTCG 59.320 43.478 0.00 0.00 0.00 3.34
34 35 5.296748 CCCAACCAATCTGAAAAATTCGTT 58.703 37.500 0.00 0.00 0.00 3.85
71 72 0.108585 AAGATCGCCACACCAACACT 59.891 50.000 0.00 0.00 0.00 3.55
143 144 4.818546 GCCTAATGCTTTGATCTGAGCTAA 59.181 41.667 17.68 0.00 39.60 3.09
154 155 5.494724 TGATCTGAGCTAAGCAAACTCATT 58.505 37.500 0.00 0.00 39.57 2.57
155 156 5.353400 TGATCTGAGCTAAGCAAACTCATTG 59.647 40.000 0.00 0.00 39.57 2.82
156 157 4.898320 TCTGAGCTAAGCAAACTCATTGA 58.102 39.130 0.00 0.00 41.85 2.57
157 158 5.494724 TCTGAGCTAAGCAAACTCATTGAT 58.505 37.500 0.00 0.00 41.85 2.57
159 160 5.946298 TGAGCTAAGCAAACTCATTGATTG 58.054 37.500 2.26 0.00 46.50 2.67
184 188 1.651132 GTGTGACACACTTTGCGCG 60.651 57.895 27.73 0.00 45.27 6.86
186 190 3.947841 TGACACACTTTGCGCGGC 61.948 61.111 8.83 0.00 0.00 6.53
204 208 1.079127 CGGTGATTTCGAGGGTGCT 60.079 57.895 0.00 0.00 0.00 4.40
209 213 1.087501 GATTTCGAGGGTGCTTGGAC 58.912 55.000 0.00 0.00 0.00 4.02
211 215 1.750341 TTTCGAGGGTGCTTGGACGA 61.750 55.000 0.00 0.00 0.00 4.20
213 217 2.741092 GAGGGTGCTTGGACGACA 59.259 61.111 0.00 0.00 0.00 4.35
281 285 2.708216 TGATGGCGAGAAAATAGGCA 57.292 45.000 0.00 0.00 43.12 4.75
302 306 5.278604 GCACAAACAGACGAAATTTTAGGT 58.721 37.500 0.00 0.00 0.00 3.08
303 307 5.398416 GCACAAACAGACGAAATTTTAGGTC 59.602 40.000 8.92 8.92 0.00 3.85
311 315 7.551617 ACAGACGAAATTTTAGGTCGGAAATAT 59.448 33.333 17.88 1.51 39.07 1.28
312 316 7.850982 CAGACGAAATTTTAGGTCGGAAATATG 59.149 37.037 10.39 1.98 39.07 1.78
555 3849 4.941609 CGTGCAGCAGGACCTATT 57.058 55.556 9.63 0.00 31.56 1.73
561 3855 1.131638 CAGCAGGACCTATTGGCCTA 58.868 55.000 3.32 0.00 37.63 3.93
590 3884 4.722700 AGCAACGATGGCCGCCTT 62.723 61.111 11.61 3.80 43.32 4.35
604 3898 3.202001 CCTTGTATGGTGGCGGCG 61.202 66.667 0.51 0.51 0.00 6.46
785 4085 6.331572 AGGGGGTCCTTTTTGACAATTTTATT 59.668 34.615 0.00 0.00 41.56 1.40
788 4088 7.882791 GGGGTCCTTTTTGACAATTTTATTCAT 59.117 33.333 0.00 0.00 36.97 2.57
812 4112 6.603940 AAATAGTCCTTTTTGGCAATAGCA 57.396 33.333 0.00 0.00 44.61 3.49
815 4115 5.488262 AGTCCTTTTTGGCAATAGCATTT 57.512 34.783 0.00 0.00 44.61 2.32
942 4247 2.029470 CCGTAGCATCTCTTCCTCCATC 60.029 54.545 0.00 0.00 0.00 3.51
943 4248 2.890311 CGTAGCATCTCTTCCTCCATCT 59.110 50.000 0.00 0.00 0.00 2.90
987 4292 3.771160 CCGACCCCAACTCCTCCG 61.771 72.222 0.00 0.00 0.00 4.63
1000 4305 4.194720 CTCCGTTCCTCCGCCTCG 62.195 72.222 0.00 0.00 0.00 4.63
1094 4405 4.733725 ACCGCAAGCCCCCTCCTA 62.734 66.667 0.00 0.00 0.00 2.94
1186 4497 1.178276 CGGAGGCTGACTACACTTCT 58.822 55.000 0.00 0.00 0.00 2.85
1216 4527 2.023041 GAGCTACTCGCCGTCGTC 59.977 66.667 0.00 0.00 40.39 4.20
1561 4872 0.957888 GCAAGCTCTCAGTTGGGTCC 60.958 60.000 0.00 0.00 0.00 4.46
1693 5004 1.680651 CAGCCCTCGTCTCCAGTCT 60.681 63.158 0.00 0.00 0.00 3.24
1714 5025 1.767681 CTGGCCCTCAAAGAGCTCTAT 59.232 52.381 18.59 4.56 0.00 1.98
1745 5056 3.746492 GTGCTTCTCCTGTTTAATCACGT 59.254 43.478 0.00 0.00 0.00 4.49
1804 5115 2.271173 GGTGATTGGGACCCGGTC 59.729 66.667 9.30 9.30 0.00 4.79
1826 5137 2.610859 AGGCGATCCCACAGGGTT 60.611 61.111 1.36 0.00 44.74 4.11
1942 5253 0.321671 CGGAGGTCACAGATGTTGGT 59.678 55.000 0.00 0.00 0.00 3.67
1943 5254 1.673033 CGGAGGTCACAGATGTTGGTC 60.673 57.143 0.00 0.00 0.00 4.02
2213 5524 2.351835 GCGACTAAGTGTGCTTCTCTGA 60.352 50.000 0.00 0.00 36.22 3.27
2314 5625 0.468226 TGAAGGTGAAGAAGTGCCGT 59.532 50.000 0.00 0.00 0.00 5.68
2362 5673 1.884075 TTCGTGCTAGTCGGCATGGT 61.884 55.000 8.49 0.00 45.93 3.55
2542 5853 4.344237 CCATCAGGGTGGAAAGCC 57.656 61.111 0.00 0.00 42.02 4.35
2543 5854 1.380380 CCATCAGGGTGGAAAGCCC 60.380 63.158 0.00 0.00 46.43 5.19
2548 5859 2.359011 GGGTGGAAAGCCCGGATT 59.641 61.111 0.73 0.00 36.30 3.01
2549 5860 2.052104 GGGTGGAAAGCCCGGATTG 61.052 63.158 0.73 0.00 36.30 2.67
2550 5861 1.304134 GGTGGAAAGCCCGGATTGT 60.304 57.895 0.73 0.00 37.93 2.71
2560 5871 1.748493 GCCCGGATTGTTGCTTTGATA 59.252 47.619 0.73 0.00 0.00 2.15
2561 5872 2.362077 GCCCGGATTGTTGCTTTGATAT 59.638 45.455 0.73 0.00 0.00 1.63
2590 5901 1.231221 TGTCGGTTTCCATGTTTCGG 58.769 50.000 0.00 0.00 0.00 4.30
2627 5938 2.363680 AGCTCCCATAACTCATGAGTCG 59.636 50.000 28.01 18.43 41.58 4.18
2670 5984 6.490381 GGTTACTCCTGTCCTTTGATTCTTTT 59.510 38.462 0.00 0.00 0.00 2.27
2694 6008 9.926158 TTTATGTTTGTTACATTGATTGATGCT 57.074 25.926 0.00 0.00 45.19 3.79
2695 6009 7.821595 ATGTTTGTTACATTGATTGATGCTG 57.178 32.000 0.00 0.00 45.19 4.41
2696 6010 6.747125 TGTTTGTTACATTGATTGATGCTGT 58.253 32.000 0.00 0.00 0.00 4.40
2720 6034 7.275341 TGTTGTTGTTCTTTGTGATTGATGTTC 59.725 33.333 0.00 0.00 0.00 3.18
2753 6067 7.610305 TCCTTAATTGTACCATGAAGTTCTTCC 59.390 37.037 4.17 0.00 0.00 3.46
2756 6070 4.286297 TGTACCATGAAGTTCTTCCTGG 57.714 45.455 24.63 24.63 40.93 4.45
2761 6075 3.308688 CCATGAAGTTCTTCCTGGACCAT 60.309 47.826 23.09 3.81 38.51 3.55
2766 6080 4.338795 AGTTCTTCCTGGACCATCTAGA 57.661 45.455 0.00 0.00 0.00 2.43
2818 6132 5.255710 TGCTCTTTGTAGTAGCAGAGATC 57.744 43.478 0.00 0.00 41.15 2.75
2820 6134 4.340950 GCTCTTTGTAGTAGCAGAGATCCT 59.659 45.833 0.00 0.00 35.70 3.24
2824 6138 6.211584 TCTTTGTAGTAGCAGAGATCCTTGTT 59.788 38.462 0.00 0.00 0.00 2.83
2827 6141 7.043961 TGTAGTAGCAGAGATCCTTGTTATG 57.956 40.000 0.00 0.00 0.00 1.90
2890 6204 2.283145 ATGATATGGGAAGCCAGCAC 57.717 50.000 0.00 0.00 0.00 4.40
2903 6217 3.490348 AGCCAGCACTATTGTCAACTTT 58.510 40.909 0.00 0.00 0.00 2.66
2911 6225 6.488006 AGCACTATTGTCAACTTTCTGTCATT 59.512 34.615 0.00 0.00 0.00 2.57
2912 6226 6.580041 GCACTATTGTCAACTTTCTGTCATTG 59.420 38.462 0.00 0.00 0.00 2.82
2916 6230 7.992180 ATTGTCAACTTTCTGTCATTGTTTC 57.008 32.000 0.00 0.00 0.00 2.78
2918 6232 6.554419 TGTCAACTTTCTGTCATTGTTTCTG 58.446 36.000 0.00 0.00 0.00 3.02
2937 6251 3.007290 TCTGCATGCTGGTATCTATGGTC 59.993 47.826 22.54 0.00 0.00 4.02
2945 6259 5.011431 TGCTGGTATCTATGGTCTTCAGATG 59.989 44.000 0.00 0.00 31.60 2.90
2963 6278 8.692110 TTCAGATGCAAGTGCTTATTAATTTG 57.308 30.769 4.69 0.00 42.66 2.32
2965 6280 8.186163 TCAGATGCAAGTGCTTATTAATTTGAG 58.814 33.333 4.69 0.00 42.66 3.02
2970 6285 7.916977 TGCAAGTGCTTATTAATTTGAGCTATG 59.083 33.333 15.00 12.43 42.66 2.23
3010 6325 7.687445 TGATGATCAGAAATCAACAATACGTG 58.313 34.615 0.09 0.00 29.75 4.49
3020 6335 7.786178 AATCAACAATACGTGCATAGTACAT 57.214 32.000 0.00 0.00 0.00 2.29
3023 6338 6.475402 TCAACAATACGTGCATAGTACATCAG 59.525 38.462 0.00 0.44 0.00 2.90
3033 6348 7.371159 GTGCATAGTACATCAGCTGATACTAA 58.629 38.462 29.83 18.21 32.50 2.24
3034 6349 7.540400 GTGCATAGTACATCAGCTGATACTAAG 59.460 40.741 29.83 27.12 32.50 2.18
3036 6351 8.465999 GCATAGTACATCAGCTGATACTAAGAT 58.534 37.037 29.83 18.94 32.50 2.40
3041 6356 9.967346 GTACATCAGCTGATACTAAGATTTACA 57.033 33.333 28.27 0.00 32.63 2.41
3043 6358 9.539825 ACATCAGCTGATACTAAGATTTACAAG 57.460 33.333 28.27 12.58 32.63 3.16
3044 6359 9.755804 CATCAGCTGATACTAAGATTTACAAGA 57.244 33.333 28.27 0.00 32.63 3.02
3045 6360 9.979578 ATCAGCTGATACTAAGATTTACAAGAG 57.020 33.333 27.73 0.00 32.01 2.85
3046 6361 9.190317 TCAGCTGATACTAAGATTTACAAGAGA 57.810 33.333 13.74 0.00 0.00 3.10
3047 6362 9.462174 CAGCTGATACTAAGATTTACAAGAGAG 57.538 37.037 8.42 0.00 0.00 3.20
3048 6363 9.196139 AGCTGATACTAAGATTTACAAGAGAGT 57.804 33.333 0.00 0.00 0.00 3.24
3049 6364 9.810545 GCTGATACTAAGATTTACAAGAGAGTT 57.189 33.333 0.00 0.00 0.00 3.01
3052 6367 8.950208 ATACTAAGATTTACAAGAGAGTTGGC 57.050 34.615 0.00 0.00 0.00 4.52
3053 6368 6.174049 ACTAAGATTTACAAGAGAGTTGGCC 58.826 40.000 0.00 0.00 0.00 5.36
3054 6369 4.917906 AGATTTACAAGAGAGTTGGCCT 57.082 40.909 3.32 0.00 0.00 5.19
3055 6370 5.248380 AGATTTACAAGAGAGTTGGCCTT 57.752 39.130 3.32 0.00 0.00 4.35
3056 6371 5.006386 AGATTTACAAGAGAGTTGGCCTTG 58.994 41.667 3.32 0.00 42.04 3.61
3057 6372 4.431416 TTTACAAGAGAGTTGGCCTTGA 57.569 40.909 3.32 0.00 39.55 3.02
3058 6373 4.431416 TTACAAGAGAGTTGGCCTTGAA 57.569 40.909 3.32 0.00 39.55 2.69
3059 6374 3.515602 ACAAGAGAGTTGGCCTTGAAT 57.484 42.857 3.32 0.00 39.55 2.57
3060 6375 3.837355 ACAAGAGAGTTGGCCTTGAATT 58.163 40.909 3.32 0.00 39.55 2.17
3061 6376 3.571401 ACAAGAGAGTTGGCCTTGAATTG 59.429 43.478 3.32 3.31 39.55 2.32
3062 6377 3.795688 AGAGAGTTGGCCTTGAATTGA 57.204 42.857 3.32 0.00 0.00 2.57
3063 6378 4.104383 AGAGAGTTGGCCTTGAATTGAA 57.896 40.909 3.32 0.00 0.00 2.69
3064 6379 4.473444 AGAGAGTTGGCCTTGAATTGAAA 58.527 39.130 3.32 0.00 0.00 2.69
3065 6380 4.895297 AGAGAGTTGGCCTTGAATTGAAAA 59.105 37.500 3.32 0.00 0.00 2.29
3066 6381 5.363580 AGAGAGTTGGCCTTGAATTGAAAAA 59.636 36.000 3.32 0.00 0.00 1.94
3067 6382 6.042437 AGAGAGTTGGCCTTGAATTGAAAAAT 59.958 34.615 3.32 0.00 0.00 1.82
3068 6383 7.233348 AGAGAGTTGGCCTTGAATTGAAAAATA 59.767 33.333 3.32 0.00 0.00 1.40
3069 6384 7.734942 AGAGTTGGCCTTGAATTGAAAAATAA 58.265 30.769 3.32 0.00 0.00 1.40
3070 6385 8.377799 AGAGTTGGCCTTGAATTGAAAAATAAT 58.622 29.630 3.32 0.00 0.00 1.28
3071 6386 8.326680 AGTTGGCCTTGAATTGAAAAATAATG 57.673 30.769 3.32 0.00 0.00 1.90
3072 6387 8.156165 AGTTGGCCTTGAATTGAAAAATAATGA 58.844 29.630 3.32 0.00 0.00 2.57
3073 6388 8.949177 GTTGGCCTTGAATTGAAAAATAATGAT 58.051 29.630 3.32 0.00 0.00 2.45
3074 6389 8.495361 TGGCCTTGAATTGAAAAATAATGATG 57.505 30.769 3.32 0.00 0.00 3.07
3075 6390 8.102047 TGGCCTTGAATTGAAAAATAATGATGT 58.898 29.630 3.32 0.00 0.00 3.06
3076 6391 8.392612 GGCCTTGAATTGAAAAATAATGATGTG 58.607 33.333 0.00 0.00 0.00 3.21
3077 6392 9.153721 GCCTTGAATTGAAAAATAATGATGTGA 57.846 29.630 0.00 0.00 0.00 3.58
3107 6422 7.281774 AGCAATACTGTCAACTTTCTATCATGG 59.718 37.037 0.00 0.00 0.00 3.66
3114 6429 5.569059 GTCAACTTTCTATCATGGTTTTGCG 59.431 40.000 0.00 0.00 0.00 4.85
3130 6445 0.679505 TGCGTGCTGGTTTCTCTAGT 59.320 50.000 0.00 0.00 0.00 2.57
3228 6549 4.895297 TGATTTTGAAGAGAGGTGCCTTTT 59.105 37.500 0.00 0.00 0.00 2.27
3234 6555 0.402121 GAGAGGTGCCTTTTGGGTCT 59.598 55.000 0.00 0.00 40.82 3.85
3246 6567 5.723295 CCTTTTGGGTCTATCAATGTTTGG 58.277 41.667 0.00 0.00 35.46 3.28
3254 6575 7.054124 GGGTCTATCAATGTTTGGATAGTCAA 58.946 38.462 0.00 0.00 42.23 3.18
3255 6576 7.227512 GGGTCTATCAATGTTTGGATAGTCAAG 59.772 40.741 0.00 0.00 42.23 3.02
3258 6579 9.817809 TCTATCAATGTTTGGATAGTCAAGTAC 57.182 33.333 0.00 0.00 42.23 2.73
3259 6580 9.823647 CTATCAATGTTTGGATAGTCAAGTACT 57.176 33.333 0.00 0.00 42.62 2.73
3262 6583 8.783093 TCAATGTTTGGATAGTCAAGTACTTTG 58.217 33.333 5.07 2.14 39.80 2.77
3263 6584 8.567948 CAATGTTTGGATAGTCAAGTACTTTGT 58.432 33.333 5.07 0.00 39.80 2.83
3264 6585 9.787435 AATGTTTGGATAGTCAAGTACTTTGTA 57.213 29.630 5.07 0.00 39.80 2.41
3265 6586 9.959721 ATGTTTGGATAGTCAAGTACTTTGTAT 57.040 29.630 5.07 3.29 39.80 2.29
3388 6709 1.972660 GCCGACAGCTCTATTGGGGT 61.973 60.000 0.00 0.00 38.99 4.95
3433 6754 6.404734 CCAATAGATTTTGGTAGTGTTGGCTC 60.405 42.308 0.00 0.00 41.09 4.70
3454 6775 5.483174 TCCCCTGGAGATTCTTTCTAGTA 57.517 43.478 0.00 0.00 33.74 1.82
3455 6776 5.209659 TCCCCTGGAGATTCTTTCTAGTAC 58.790 45.833 0.00 0.00 33.74 2.73
3456 6777 4.962995 CCCCTGGAGATTCTTTCTAGTACA 59.037 45.833 0.00 0.00 33.74 2.90
3457 6778 5.604650 CCCCTGGAGATTCTTTCTAGTACAT 59.395 44.000 0.00 0.00 33.74 2.29
3458 6779 6.782988 CCCCTGGAGATTCTTTCTAGTACATA 59.217 42.308 0.00 0.00 33.74 2.29
3459 6780 7.290248 CCCCTGGAGATTCTTTCTAGTACATAA 59.710 40.741 0.00 0.00 33.74 1.90
3460 6781 8.705594 CCCTGGAGATTCTTTCTAGTACATAAA 58.294 37.037 0.00 0.00 33.74 1.40
3482 6803 9.912634 ATAAATGGAGTACAATGAAAAGTGTTG 57.087 29.630 0.00 0.00 0.00 3.33
3511 6832 8.687824 GTGGAACAAATTATAATGGTTCAGTG 57.312 34.615 27.44 11.60 44.16 3.66
3530 6851 5.068591 TCAGTGAGTAACTTGTGCTTCACTA 59.931 40.000 4.81 0.00 36.83 2.74
3536 6857 2.838736 ACTTGTGCTTCACTAGTGGTG 58.161 47.619 22.48 15.63 45.36 4.17
3538 6859 0.467804 TGTGCTTCACTAGTGGTGCA 59.532 50.000 27.48 27.48 44.98 4.57
3546 6867 6.015519 TGCTTCACTAGTGGTGCAAATTTTAT 60.016 34.615 28.38 0.00 44.98 1.40
3557 6878 6.985645 TGGTGCAAATTTTATGCTATTGGATC 59.014 34.615 2.52 0.00 44.14 3.36
3558 6879 6.424812 GGTGCAAATTTTATGCTATTGGATCC 59.575 38.462 4.20 4.20 44.14 3.36
3559 6880 6.985645 GTGCAAATTTTATGCTATTGGATCCA 59.014 34.615 11.44 11.44 44.14 3.41
3560 6881 7.495279 GTGCAAATTTTATGCTATTGGATCCAA 59.505 33.333 28.92 28.92 44.14 3.53
3561 6882 8.212312 TGCAAATTTTATGCTATTGGATCCAAT 58.788 29.630 35.94 35.94 44.14 3.16
3562 6883 9.059260 GCAAATTTTATGCTATTGGATCCAATT 57.941 29.630 38.12 25.14 40.68 2.32
3566 6887 9.938280 ATTTTATGCTATTGGATCCAATTGATG 57.062 29.630 37.42 26.98 43.32 3.07
3577 6898 3.899052 CCAATTGATGGGCTTGATTGT 57.101 42.857 7.12 0.00 46.27 2.71
3579 6900 4.685924 CCAATTGATGGGCTTGATTGTAC 58.314 43.478 7.12 0.00 46.27 2.90
3580 6901 4.160065 CCAATTGATGGGCTTGATTGTACA 59.840 41.667 7.12 0.00 46.27 2.90
3581 6902 5.163385 CCAATTGATGGGCTTGATTGTACAT 60.163 40.000 7.12 0.00 46.27 2.29
3582 6903 6.342906 CAATTGATGGGCTTGATTGTACATT 58.657 36.000 0.00 0.00 0.00 2.71
3583 6904 5.581126 TTGATGGGCTTGATTGTACATTC 57.419 39.130 10.22 10.22 0.00 2.67
3584 6905 4.858850 TGATGGGCTTGATTGTACATTCT 58.141 39.130 16.45 0.00 0.00 2.40
3585 6906 4.641541 TGATGGGCTTGATTGTACATTCTG 59.358 41.667 16.45 11.21 0.00 3.02
3586 6907 4.032960 TGGGCTTGATTGTACATTCTGT 57.967 40.909 16.45 0.00 0.00 3.41
3587 6908 4.406456 TGGGCTTGATTGTACATTCTGTT 58.594 39.130 16.45 0.00 0.00 3.16
3588 6909 4.832266 TGGGCTTGATTGTACATTCTGTTT 59.168 37.500 16.45 0.00 0.00 2.83
3589 6910 5.304101 TGGGCTTGATTGTACATTCTGTTTT 59.696 36.000 16.45 0.00 0.00 2.43
3590 6911 5.634859 GGGCTTGATTGTACATTCTGTTTTG 59.365 40.000 16.45 4.53 0.00 2.44
3591 6912 6.215845 GGCTTGATTGTACATTCTGTTTTGT 58.784 36.000 16.45 0.00 0.00 2.83
3592 6913 6.701400 GGCTTGATTGTACATTCTGTTTTGTT 59.299 34.615 16.45 0.00 0.00 2.83
3593 6914 7.306749 GGCTTGATTGTACATTCTGTTTTGTTG 60.307 37.037 16.45 1.58 0.00 3.33
3594 6915 7.306749 GCTTGATTGTACATTCTGTTTTGTTGG 60.307 37.037 16.45 0.45 0.00 3.77
3595 6916 6.511416 TGATTGTACATTCTGTTTTGTTGGG 58.489 36.000 16.45 0.00 0.00 4.12
3596 6917 5.923733 TTGTACATTCTGTTTTGTTGGGT 57.076 34.783 0.00 0.00 0.00 4.51
3597 6918 5.255710 TGTACATTCTGTTTTGTTGGGTG 57.744 39.130 0.00 0.00 0.00 4.61
3598 6919 3.177997 ACATTCTGTTTTGTTGGGTGC 57.822 42.857 0.00 0.00 0.00 5.01
3599 6920 2.765699 ACATTCTGTTTTGTTGGGTGCT 59.234 40.909 0.00 0.00 0.00 4.40
3600 6921 3.957497 ACATTCTGTTTTGTTGGGTGCTA 59.043 39.130 0.00 0.00 0.00 3.49
3601 6922 4.202111 ACATTCTGTTTTGTTGGGTGCTAC 60.202 41.667 0.00 0.00 0.00 3.58
3602 6923 3.290948 TCTGTTTTGTTGGGTGCTACT 57.709 42.857 0.00 0.00 0.00 2.57
3603 6924 3.626930 TCTGTTTTGTTGGGTGCTACTT 58.373 40.909 0.00 0.00 0.00 2.24
3604 6925 4.020543 TCTGTTTTGTTGGGTGCTACTTT 58.979 39.130 0.00 0.00 0.00 2.66
3605 6926 4.464597 TCTGTTTTGTTGGGTGCTACTTTT 59.535 37.500 0.00 0.00 0.00 2.27
3606 6927 5.046950 TCTGTTTTGTTGGGTGCTACTTTTT 60.047 36.000 0.00 0.00 0.00 1.94
3607 6928 4.932200 TGTTTTGTTGGGTGCTACTTTTTG 59.068 37.500 0.00 0.00 0.00 2.44
3608 6929 4.810191 TTTGTTGGGTGCTACTTTTTGT 57.190 36.364 0.00 0.00 0.00 2.83
3609 6930 5.916661 TTTGTTGGGTGCTACTTTTTGTA 57.083 34.783 0.00 0.00 0.00 2.41
3624 6945 9.813080 CTACTTTTTGTAGTGAGAAGCATTTAC 57.187 33.333 0.00 0.00 42.68 2.01
3625 6946 7.352739 ACTTTTTGTAGTGAGAAGCATTTACG 58.647 34.615 0.00 0.00 0.00 3.18
3626 6947 5.856126 TTTGTAGTGAGAAGCATTTACGG 57.144 39.130 0.00 0.00 0.00 4.02
3627 6948 4.530710 TGTAGTGAGAAGCATTTACGGT 57.469 40.909 0.00 0.00 0.00 4.83
3628 6949 5.648178 TGTAGTGAGAAGCATTTACGGTA 57.352 39.130 0.00 0.00 0.00 4.02
3629 6950 6.028146 TGTAGTGAGAAGCATTTACGGTAA 57.972 37.500 0.00 0.00 0.00 2.85
3630 6951 6.097356 TGTAGTGAGAAGCATTTACGGTAAG 58.903 40.000 0.33 0.00 0.00 2.34
3631 6952 5.148651 AGTGAGAAGCATTTACGGTAAGT 57.851 39.130 0.33 0.00 0.00 2.24
3632 6953 4.929808 AGTGAGAAGCATTTACGGTAAGTG 59.070 41.667 16.39 16.39 0.00 3.16
3633 6954 4.092968 GTGAGAAGCATTTACGGTAAGTGG 59.907 45.833 20.47 7.92 0.00 4.00
3634 6955 3.606687 AGAAGCATTTACGGTAAGTGGG 58.393 45.455 20.47 5.91 0.00 4.61
3635 6956 3.008704 AGAAGCATTTACGGTAAGTGGGT 59.991 43.478 20.47 9.11 0.00 4.51
3636 6957 3.428413 AGCATTTACGGTAAGTGGGTT 57.572 42.857 20.47 1.21 0.00 4.11
3637 6958 4.556592 AGCATTTACGGTAAGTGGGTTA 57.443 40.909 20.47 0.00 0.00 2.85
3638 6959 5.106876 AGCATTTACGGTAAGTGGGTTAT 57.893 39.130 20.47 0.45 0.00 1.89
3639 6960 5.121105 AGCATTTACGGTAAGTGGGTTATC 58.879 41.667 20.47 6.85 0.00 1.75
3640 6961 5.104652 AGCATTTACGGTAAGTGGGTTATCT 60.105 40.000 20.47 8.60 0.00 1.98
3641 6962 5.587443 GCATTTACGGTAAGTGGGTTATCTT 59.413 40.000 20.47 0.00 0.00 2.40
3642 6963 6.094464 GCATTTACGGTAAGTGGGTTATCTTT 59.906 38.462 20.47 0.00 0.00 2.52
3643 6964 7.362315 GCATTTACGGTAAGTGGGTTATCTTTT 60.362 37.037 20.47 0.00 0.00 2.27
3644 6965 9.165035 CATTTACGGTAAGTGGGTTATCTTTTA 57.835 33.333 13.74 0.00 0.00 1.52
3645 6966 9.910267 ATTTACGGTAAGTGGGTTATCTTTTAT 57.090 29.630 0.33 0.00 0.00 1.40
3646 6967 8.721019 TTACGGTAAGTGGGTTATCTTTTATG 57.279 34.615 0.00 0.00 0.00 1.90
3647 6968 6.714278 ACGGTAAGTGGGTTATCTTTTATGT 58.286 36.000 0.00 0.00 0.00 2.29
3648 6969 6.596497 ACGGTAAGTGGGTTATCTTTTATGTG 59.404 38.462 0.00 0.00 0.00 3.21
3649 6970 6.037830 CGGTAAGTGGGTTATCTTTTATGTGG 59.962 42.308 0.00 0.00 0.00 4.17
3650 6971 6.888088 GGTAAGTGGGTTATCTTTTATGTGGT 59.112 38.462 0.00 0.00 0.00 4.16
3651 6972 6.834168 AAGTGGGTTATCTTTTATGTGGTG 57.166 37.500 0.00 0.00 0.00 4.17
3652 6973 4.705023 AGTGGGTTATCTTTTATGTGGTGC 59.295 41.667 0.00 0.00 0.00 5.01
3653 6974 4.461081 GTGGGTTATCTTTTATGTGGTGCA 59.539 41.667 0.00 0.00 0.00 4.57
3654 6975 5.047660 GTGGGTTATCTTTTATGTGGTGCAA 60.048 40.000 0.00 0.00 0.00 4.08
3655 6976 5.540337 TGGGTTATCTTTTATGTGGTGCAAA 59.460 36.000 0.00 0.00 0.00 3.68
3656 6977 6.212388 TGGGTTATCTTTTATGTGGTGCAAAT 59.788 34.615 0.00 0.00 0.00 2.32
3657 6978 7.397476 TGGGTTATCTTTTATGTGGTGCAAATA 59.603 33.333 0.00 0.00 0.00 1.40
3658 6979 8.421002 GGGTTATCTTTTATGTGGTGCAAATAT 58.579 33.333 0.00 0.00 0.00 1.28
3671 6992 9.407380 TGTGGTGCAAATATATATTTCTGTTCT 57.593 29.630 16.25 0.00 33.88 3.01
3672 6993 9.669353 GTGGTGCAAATATATATTTCTGTTCTG 57.331 33.333 16.25 7.10 33.88 3.02
3673 6994 9.407380 TGGTGCAAATATATATTTCTGTTCTGT 57.593 29.630 16.25 0.00 33.88 3.41
3674 6995 9.884465 GGTGCAAATATATATTTCTGTTCTGTC 57.116 33.333 16.25 4.12 33.88 3.51
3675 6996 9.884465 GTGCAAATATATATTTCTGTTCTGTCC 57.116 33.333 16.25 0.00 33.88 4.02
3676 6997 9.625747 TGCAAATATATATTTCTGTTCTGTCCA 57.374 29.630 16.25 0.00 33.88 4.02
3677 6998 9.884465 GCAAATATATATTTCTGTTCTGTCCAC 57.116 33.333 16.25 0.00 33.88 4.02
3682 7003 6.865834 ATATTTCTGTTCTGTCCACTCTCT 57.134 37.500 0.00 0.00 0.00 3.10
3683 7004 4.327982 TTTCTGTTCTGTCCACTCTCTG 57.672 45.455 0.00 0.00 0.00 3.35
3684 7005 3.229697 TCTGTTCTGTCCACTCTCTGA 57.770 47.619 0.00 0.00 0.00 3.27
3685 7006 3.772387 TCTGTTCTGTCCACTCTCTGAT 58.228 45.455 0.00 0.00 0.00 2.90
3686 7007 3.761218 TCTGTTCTGTCCACTCTCTGATC 59.239 47.826 0.00 0.00 0.00 2.92
3687 7008 3.500343 TGTTCTGTCCACTCTCTGATCA 58.500 45.455 0.00 0.00 0.00 2.92
3688 7009 4.092279 TGTTCTGTCCACTCTCTGATCAT 58.908 43.478 0.00 0.00 0.00 2.45
3689 7010 4.159321 TGTTCTGTCCACTCTCTGATCATC 59.841 45.833 0.00 0.00 0.00 2.92
3690 7011 2.948315 TCTGTCCACTCTCTGATCATCG 59.052 50.000 0.00 0.00 0.00 3.84
3691 7012 2.948315 CTGTCCACTCTCTGATCATCGA 59.052 50.000 0.00 0.00 0.00 3.59
3692 7013 3.560105 TGTCCACTCTCTGATCATCGAT 58.440 45.455 0.00 0.00 0.00 3.59
3693 7014 3.567585 TGTCCACTCTCTGATCATCGATC 59.432 47.826 0.00 0.00 39.31 3.69
3694 7015 3.057596 GTCCACTCTCTGATCATCGATCC 60.058 52.174 0.00 0.00 38.20 3.36
3695 7016 3.156293 CCACTCTCTGATCATCGATCCT 58.844 50.000 0.00 0.00 38.20 3.24
3696 7017 3.573538 CCACTCTCTGATCATCGATCCTT 59.426 47.826 0.00 0.00 38.20 3.36
3697 7018 4.039004 CCACTCTCTGATCATCGATCCTTT 59.961 45.833 0.00 0.00 38.20 3.11
3698 7019 4.983538 CACTCTCTGATCATCGATCCTTTG 59.016 45.833 0.00 0.00 38.20 2.77
3699 7020 3.987547 TCTCTGATCATCGATCCTTTGC 58.012 45.455 0.00 0.00 38.20 3.68
3700 7021 3.385755 TCTCTGATCATCGATCCTTTGCA 59.614 43.478 0.00 0.00 38.20 4.08
3701 7022 3.725490 TCTGATCATCGATCCTTTGCAG 58.275 45.455 0.00 0.00 38.20 4.41
3702 7023 3.133542 TCTGATCATCGATCCTTTGCAGT 59.866 43.478 0.00 0.00 38.20 4.40
3703 7024 3.200483 TGATCATCGATCCTTTGCAGTG 58.800 45.455 0.00 0.00 38.20 3.66
3704 7025 2.768253 TCATCGATCCTTTGCAGTGT 57.232 45.000 0.00 0.00 0.00 3.55
3705 7026 2.349590 TCATCGATCCTTTGCAGTGTG 58.650 47.619 0.00 0.00 0.00 3.82
3706 7027 1.089920 ATCGATCCTTTGCAGTGTGC 58.910 50.000 0.00 0.00 45.29 4.57
3715 7036 3.115556 GCAGTGTGCGGTTGGAAA 58.884 55.556 0.00 0.00 31.71 3.13
3716 7037 1.299089 GCAGTGTGCGGTTGGAAAC 60.299 57.895 0.00 0.00 39.07 2.78
3717 7038 1.724582 GCAGTGTGCGGTTGGAAACT 61.725 55.000 0.00 0.00 39.53 2.66
3731 7052 4.853924 TGGAAACTGGAAAGAATCAAGC 57.146 40.909 0.00 0.00 31.56 4.01
3732 7053 4.473444 TGGAAACTGGAAAGAATCAAGCT 58.527 39.130 0.00 0.00 31.56 3.74
3733 7054 4.279169 TGGAAACTGGAAAGAATCAAGCTG 59.721 41.667 0.00 0.00 31.56 4.24
3734 7055 3.930634 AACTGGAAAGAATCAAGCTGC 57.069 42.857 0.00 0.00 31.56 5.25
3735 7056 2.867624 ACTGGAAAGAATCAAGCTGCA 58.132 42.857 1.02 0.00 31.56 4.41
3736 7057 3.428532 ACTGGAAAGAATCAAGCTGCAT 58.571 40.909 1.02 0.00 31.56 3.96
3737 7058 3.442977 ACTGGAAAGAATCAAGCTGCATC 59.557 43.478 1.02 0.00 31.56 3.91
3738 7059 3.423749 TGGAAAGAATCAAGCTGCATCA 58.576 40.909 1.02 0.00 0.00 3.07
3739 7060 3.442625 TGGAAAGAATCAAGCTGCATCAG 59.557 43.478 1.02 0.00 34.12 2.90
3740 7061 3.693085 GGAAAGAATCAAGCTGCATCAGA 59.307 43.478 1.02 0.00 32.44 3.27
3741 7062 4.201930 GGAAAGAATCAAGCTGCATCAGAG 60.202 45.833 1.02 0.00 32.44 3.35
3742 7063 2.290464 AGAATCAAGCTGCATCAGAGC 58.710 47.619 1.02 0.00 36.65 4.09
3743 7064 1.334243 GAATCAAGCTGCATCAGAGCC 59.666 52.381 1.02 0.00 37.12 4.70
3744 7065 0.255033 ATCAAGCTGCATCAGAGCCA 59.745 50.000 1.02 0.00 37.12 4.75
3745 7066 0.675837 TCAAGCTGCATCAGAGCCAC 60.676 55.000 1.02 0.00 37.12 5.01
3746 7067 0.677098 CAAGCTGCATCAGAGCCACT 60.677 55.000 1.02 0.00 37.12 4.00
3747 7068 0.037877 AAGCTGCATCAGAGCCACTT 59.962 50.000 1.02 0.00 37.12 3.16
3748 7069 0.037877 AGCTGCATCAGAGCCACTTT 59.962 50.000 1.02 0.00 37.12 2.66
3749 7070 0.170561 GCTGCATCAGAGCCACTTTG 59.829 55.000 0.00 0.00 32.44 2.77
3750 7071 1.531423 CTGCATCAGAGCCACTTTGT 58.469 50.000 0.00 0.00 32.44 2.83
3751 7072 1.199327 CTGCATCAGAGCCACTTTGTG 59.801 52.381 0.00 0.00 32.44 3.33
3752 7073 4.023561 CTGCATCAGAGCCACTTTGTGG 62.024 54.545 12.00 12.00 44.25 4.17
3795 7116 7.156876 TGAAATTGATAGATTGTGGTCAACC 57.843 36.000 0.00 0.00 36.33 3.77
3796 7117 6.947733 TGAAATTGATAGATTGTGGTCAACCT 59.052 34.615 0.10 0.00 36.33 3.50
3797 7118 6.764308 AATTGATAGATTGTGGTCAACCTG 57.236 37.500 0.10 0.00 36.33 4.00
3798 7119 4.220693 TGATAGATTGTGGTCAACCTGG 57.779 45.455 0.10 0.00 36.33 4.45
3799 7120 3.843619 TGATAGATTGTGGTCAACCTGGA 59.156 43.478 0.00 0.00 36.33 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 3.280295 TGCAAGGTGAAAAAGGTAACGA 58.720 40.909 0.00 0.00 46.39 3.85
32 33 5.656480 TCTTTGCAAGGTGAAAAAGGTAAC 58.344 37.500 8.56 0.00 31.87 2.50
34 35 5.278266 CGATCTTTGCAAGGTGAAAAAGGTA 60.278 40.000 8.56 0.00 31.87 3.08
84 85 2.115266 CAAGTTTGCCTCCGGGGT 59.885 61.111 0.00 0.00 37.43 4.95
184 188 2.106683 CACCCTCGAAATCACCGCC 61.107 63.158 0.00 0.00 0.00 6.13
186 190 0.673644 AAGCACCCTCGAAATCACCG 60.674 55.000 0.00 0.00 0.00 4.94
189 193 0.690192 TCCAAGCACCCTCGAAATCA 59.310 50.000 0.00 0.00 0.00 2.57
204 208 3.421844 TCTCTCTTCATCTGTCGTCCAA 58.578 45.455 0.00 0.00 0.00 3.53
209 213 2.023673 AGGCTCTCTCTTCATCTGTCG 58.976 52.381 0.00 0.00 0.00 4.35
211 215 2.023673 CGAGGCTCTCTCTTCATCTGT 58.976 52.381 13.50 0.00 40.30 3.41
213 217 1.064017 ACCGAGGCTCTCTCTTCATCT 60.064 52.381 13.50 0.00 40.30 2.90
252 256 1.204704 TCTCGCCATCATTTGTCGTCT 59.795 47.619 0.00 0.00 0.00 4.18
281 285 5.277634 CCGACCTAAAATTTCGTCTGTTTGT 60.278 40.000 9.85 0.00 0.00 2.83
302 306 1.414550 TGGGATCACGCATATTTCCGA 59.585 47.619 0.00 0.00 34.12 4.55
303 307 1.877637 TGGGATCACGCATATTTCCG 58.122 50.000 0.00 0.00 34.12 4.30
311 315 1.514678 GCACTGTTTGGGATCACGCA 61.515 55.000 0.00 0.00 37.19 5.24
312 316 1.210155 GCACTGTTTGGGATCACGC 59.790 57.895 0.00 0.00 0.00 5.34
415 419 0.727970 CGACCGACGAGACAGATTCT 59.272 55.000 0.00 0.00 45.77 2.40
577 3871 1.523711 CATACAAGGCGGCCATCGT 60.524 57.895 23.09 16.57 41.72 3.73
785 4085 8.413229 GCTATTGCCAAAAAGGACTATTTATGA 58.587 33.333 0.00 0.00 41.22 2.15
788 4088 7.710676 TGCTATTGCCAAAAAGGACTATTTA 57.289 32.000 0.00 0.00 41.22 1.40
791 4091 6.796785 AATGCTATTGCCAAAAAGGACTAT 57.203 33.333 0.00 0.00 41.22 2.12
826 4126 3.308323 GCATGCGACTTTTTGTCCAAAAA 59.692 39.130 15.05 15.05 44.98 1.94
942 4247 1.372501 TTGGGGAAAGGGAGGAAGAG 58.627 55.000 0.00 0.00 0.00 2.85
943 4248 1.923148 GATTGGGGAAAGGGAGGAAGA 59.077 52.381 0.00 0.00 0.00 2.87
1204 4515 4.099170 CCGAAGACGACGGCGAGT 62.099 66.667 22.49 13.72 43.74 4.18
1216 4527 4.214327 GAGCCGAGGAGCCCGAAG 62.214 72.222 0.00 0.00 0.00 3.79
1612 4923 0.326595 TGACAGAGAGCTCCTCGAGT 59.673 55.000 10.93 11.10 46.49 4.18
1651 4962 1.142748 GGTGATGGGCTCTGAGTCG 59.857 63.158 6.53 0.00 0.00 4.18
1693 5004 0.546267 AGAGCTCTTTGAGGGCCAGA 60.546 55.000 11.45 0.00 0.00 3.86
1714 5025 1.192146 AGGAGAAGCACTGCCCGTTA 61.192 55.000 0.00 0.00 37.69 3.18
1745 5056 0.469144 GTTTTGAGGTTGGGGGAGCA 60.469 55.000 0.00 0.00 0.00 4.26
1804 5115 3.083349 TGTGGGATCGCCTGGAGG 61.083 66.667 7.38 0.00 38.53 4.30
2152 5463 0.112218 CCCCAAATGTGTCAGACCCA 59.888 55.000 0.00 0.00 0.00 4.51
2213 5524 0.964358 GCCTTGATGCACAGCTTCCT 60.964 55.000 0.00 0.00 32.74 3.36
2314 5625 1.539496 GCACACTCAAACGTCACCCTA 60.539 52.381 0.00 0.00 0.00 3.53
2362 5673 3.380954 TGTCAAAATTCACAGCAAGAGCA 59.619 39.130 0.00 0.00 45.49 4.26
2542 5853 4.898829 TGATATCAAAGCAACAATCCGG 57.101 40.909 1.98 0.00 0.00 5.14
2543 5854 5.066375 TCCTTGATATCAAAGCAACAATCCG 59.934 40.000 18.47 3.28 35.15 4.18
2548 5859 4.592942 AGCTCCTTGATATCAAAGCAACA 58.407 39.130 30.21 7.62 40.39 3.33
2549 5860 5.105997 ACAAGCTCCTTGATATCAAAGCAAC 60.106 40.000 30.21 16.24 43.42 4.17
2550 5861 5.012239 ACAAGCTCCTTGATATCAAAGCAA 58.988 37.500 30.21 13.48 43.42 3.91
2560 5871 2.427506 GAAACCGACAAGCTCCTTGAT 58.572 47.619 11.56 0.00 43.42 2.57
2561 5872 1.542547 GGAAACCGACAAGCTCCTTGA 60.543 52.381 11.56 0.00 43.42 3.02
2636 5947 1.423541 ACAGGAGTAACCATGGCACAA 59.576 47.619 13.04 0.00 42.04 3.33
2693 6007 6.753279 ACATCAATCACAAAGAACAACAACAG 59.247 34.615 0.00 0.00 0.00 3.16
2694 6008 6.629128 ACATCAATCACAAAGAACAACAACA 58.371 32.000 0.00 0.00 0.00 3.33
2695 6009 7.489113 AGAACATCAATCACAAAGAACAACAAC 59.511 33.333 0.00 0.00 0.00 3.32
2696 6010 7.546358 AGAACATCAATCACAAAGAACAACAA 58.454 30.769 0.00 0.00 0.00 2.83
2753 6067 6.463614 CCCTCTAAACAATCTAGATGGTCCAG 60.464 46.154 13.32 12.60 30.57 3.86
2756 6070 6.487299 ACCCTCTAAACAATCTAGATGGTC 57.513 41.667 13.32 0.00 39.05 4.02
2818 6132 6.455360 AGATTACATTGTGCCATAACAAGG 57.545 37.500 0.00 0.64 45.03 3.61
2820 6134 7.225784 ACAAGATTACATTGTGCCATAACAA 57.774 32.000 0.00 0.00 43.82 2.83
2824 6138 9.283768 CCTTATACAAGATTACATTGTGCCATA 57.716 33.333 0.00 0.00 40.92 2.74
2827 6141 7.568199 ACCTTATACAAGATTACATTGTGCC 57.432 36.000 0.00 0.00 40.92 5.01
2865 6179 5.477984 TGCTGGCTTCCCATATCATATTTTC 59.522 40.000 0.00 0.00 41.21 2.29
2875 6189 2.509548 ACAATAGTGCTGGCTTCCCATA 59.490 45.455 0.00 0.00 41.21 2.74
2890 6204 9.173939 GAAACAATGACAGAAAGTTGACAATAG 57.826 33.333 0.00 0.00 0.00 1.73
2903 6217 3.057806 CAGCATGCAGAAACAATGACAGA 60.058 43.478 21.98 0.00 0.00 3.41
2911 6225 3.354948 AGATACCAGCATGCAGAAACA 57.645 42.857 21.98 0.00 31.97 2.83
2912 6226 4.214971 CCATAGATACCAGCATGCAGAAAC 59.785 45.833 21.98 6.58 31.97 2.78
2916 6230 3.007723 AGACCATAGATACCAGCATGCAG 59.992 47.826 21.98 12.49 31.97 4.41
2918 6232 3.692257 AGACCATAGATACCAGCATGC 57.308 47.619 10.51 10.51 31.97 4.06
2937 6251 8.804743 CAAATTAATAAGCACTTGCATCTGAAG 58.195 33.333 3.62 0.00 45.16 3.02
2945 6259 8.131100 TCATAGCTCAAATTAATAAGCACTTGC 58.869 33.333 15.68 0.00 37.22 4.01
2963 6278 8.668353 CATCAGTATCTCTAGTCTTCATAGCTC 58.332 40.741 0.00 0.00 0.00 4.09
2965 6280 8.560355 TCATCAGTATCTCTAGTCTTCATAGC 57.440 38.462 0.00 0.00 0.00 2.97
2970 6285 8.846943 TCTGATCATCAGTATCTCTAGTCTTC 57.153 38.462 14.56 0.00 44.58 2.87
2972 6287 9.812347 ATTTCTGATCATCAGTATCTCTAGTCT 57.188 33.333 14.56 0.00 44.58 3.24
2984 6299 7.849515 CACGTATTGTTGATTTCTGATCATCAG 59.150 37.037 8.54 8.54 45.59 2.90
2992 6307 6.775088 ACTATGCACGTATTGTTGATTTCTG 58.225 36.000 0.00 0.00 0.00 3.02
2993 6308 6.985188 ACTATGCACGTATTGTTGATTTCT 57.015 33.333 0.00 0.00 0.00 2.52
3008 6323 5.777802 AGTATCAGCTGATGTACTATGCAC 58.222 41.667 34.48 22.07 36.05 4.57
3010 6325 7.821652 TCTTAGTATCAGCTGATGTACTATGC 58.178 38.462 34.48 14.42 36.05 3.14
3020 6335 9.190317 TCTCTTGTAAATCTTAGTATCAGCTGA 57.810 33.333 20.79 20.79 0.00 4.26
3023 6338 9.810545 AACTCTCTTGTAAATCTTAGTATCAGC 57.189 33.333 0.00 0.00 0.00 4.26
3033 6348 4.917906 AGGCCAACTCTCTTGTAAATCT 57.082 40.909 5.01 0.00 0.00 2.40
3034 6349 5.003804 TCAAGGCCAACTCTCTTGTAAATC 58.996 41.667 5.01 0.00 38.99 2.17
3036 6351 4.431416 TCAAGGCCAACTCTCTTGTAAA 57.569 40.909 5.01 0.00 38.99 2.01
3038 6353 4.640771 ATTCAAGGCCAACTCTCTTGTA 57.359 40.909 5.01 0.00 38.99 2.41
3039 6354 3.515602 ATTCAAGGCCAACTCTCTTGT 57.484 42.857 5.01 0.00 38.99 3.16
3040 6355 3.822735 TCAATTCAAGGCCAACTCTCTTG 59.177 43.478 5.01 0.00 39.20 3.02
3041 6356 4.104383 TCAATTCAAGGCCAACTCTCTT 57.896 40.909 5.01 0.00 0.00 2.85
3042 6357 3.795688 TCAATTCAAGGCCAACTCTCT 57.204 42.857 5.01 0.00 0.00 3.10
3043 6358 4.853924 TTTCAATTCAAGGCCAACTCTC 57.146 40.909 5.01 0.00 0.00 3.20
3044 6359 5.612725 TTTTTCAATTCAAGGCCAACTCT 57.387 34.783 5.01 0.00 0.00 3.24
3045 6360 7.961325 TTATTTTTCAATTCAAGGCCAACTC 57.039 32.000 5.01 0.00 0.00 3.01
3046 6361 8.156165 TCATTATTTTTCAATTCAAGGCCAACT 58.844 29.630 5.01 0.00 0.00 3.16
3047 6362 8.321650 TCATTATTTTTCAATTCAAGGCCAAC 57.678 30.769 5.01 0.00 0.00 3.77
3048 6363 8.948145 CATCATTATTTTTCAATTCAAGGCCAA 58.052 29.630 5.01 0.00 0.00 4.52
3049 6364 8.102047 ACATCATTATTTTTCAATTCAAGGCCA 58.898 29.630 5.01 0.00 0.00 5.36
3050 6365 8.392612 CACATCATTATTTTTCAATTCAAGGCC 58.607 33.333 0.00 0.00 0.00 5.19
3051 6366 9.153721 TCACATCATTATTTTTCAATTCAAGGC 57.846 29.630 0.00 0.00 0.00 4.35
3055 6370 9.708092 TGCTTCACATCATTATTTTTCAATTCA 57.292 25.926 0.00 0.00 0.00 2.57
3057 6372 8.662141 GCTGCTTCACATCATTATTTTTCAATT 58.338 29.630 0.00 0.00 0.00 2.32
3058 6373 7.820386 TGCTGCTTCACATCATTATTTTTCAAT 59.180 29.630 0.00 0.00 0.00 2.57
3059 6374 7.153315 TGCTGCTTCACATCATTATTTTTCAA 58.847 30.769 0.00 0.00 0.00 2.69
3060 6375 6.689554 TGCTGCTTCACATCATTATTTTTCA 58.310 32.000 0.00 0.00 0.00 2.69
3061 6376 7.585286 TTGCTGCTTCACATCATTATTTTTC 57.415 32.000 0.00 0.00 0.00 2.29
3062 6377 9.090692 GTATTGCTGCTTCACATCATTATTTTT 57.909 29.630 0.00 0.00 0.00 1.94
3063 6378 8.472413 AGTATTGCTGCTTCACATCATTATTTT 58.528 29.630 0.00 0.00 0.00 1.82
3064 6379 7.919091 CAGTATTGCTGCTTCACATCATTATTT 59.081 33.333 0.00 0.00 38.52 1.40
3065 6380 7.423199 CAGTATTGCTGCTTCACATCATTATT 58.577 34.615 0.00 0.00 38.52 1.40
3066 6381 6.967135 CAGTATTGCTGCTTCACATCATTAT 58.033 36.000 0.00 0.00 38.52 1.28
3067 6382 6.367686 CAGTATTGCTGCTTCACATCATTA 57.632 37.500 0.00 0.00 38.52 1.90
3068 6383 5.244785 CAGTATTGCTGCTTCACATCATT 57.755 39.130 0.00 0.00 38.52 2.57
3069 6384 4.895224 CAGTATTGCTGCTTCACATCAT 57.105 40.909 0.00 0.00 38.52 2.45
3082 6397 7.066284 ACCATGATAGAAAGTTGACAGTATTGC 59.934 37.037 0.00 0.00 0.00 3.56
3107 6422 1.065551 AGAGAAACCAGCACGCAAAAC 59.934 47.619 0.00 0.00 0.00 2.43
3114 6429 4.258702 TGAAGACTAGAGAAACCAGCAC 57.741 45.455 0.00 0.00 0.00 4.40
3210 6531 2.586425 CCAAAAGGCACCTCTCTTCAA 58.414 47.619 0.00 0.00 0.00 2.69
3219 6540 2.507407 TGATAGACCCAAAAGGCACC 57.493 50.000 0.00 0.00 40.58 5.01
3228 6549 6.157820 TGACTATCCAAACATTGATAGACCCA 59.842 38.462 12.17 5.65 33.30 4.51
3388 6709 3.521531 TGGTCTACATGAACATAAGGGCA 59.478 43.478 0.00 0.00 37.49 5.36
3422 6743 0.909610 CTCCAGGGGAGCCAACACTA 60.910 60.000 0.00 0.00 43.29 2.74
3433 6754 4.962995 TGTACTAGAAAGAATCTCCAGGGG 59.037 45.833 0.00 0.00 39.71 4.79
3454 6775 9.077885 ACACTTTTCATTGTACTCCATTTATGT 57.922 29.630 0.00 0.00 0.00 2.29
3455 6776 9.912634 AACACTTTTCATTGTACTCCATTTATG 57.087 29.630 0.00 0.00 0.00 1.90
3456 6777 9.912634 CAACACTTTTCATTGTACTCCATTTAT 57.087 29.630 0.00 0.00 0.00 1.40
3457 6778 8.908903 ACAACACTTTTCATTGTACTCCATTTA 58.091 29.630 0.00 0.00 34.84 1.40
3458 6779 7.781056 ACAACACTTTTCATTGTACTCCATTT 58.219 30.769 0.00 0.00 34.84 2.32
3459 6780 7.346751 ACAACACTTTTCATTGTACTCCATT 57.653 32.000 0.00 0.00 34.84 3.16
3460 6781 6.959639 ACAACACTTTTCATTGTACTCCAT 57.040 33.333 0.00 0.00 34.84 3.41
3461 6782 6.767524 AACAACACTTTTCATTGTACTCCA 57.232 33.333 0.00 0.00 35.54 3.86
3462 6783 7.009174 CACAAACAACACTTTTCATTGTACTCC 59.991 37.037 0.00 0.00 35.54 3.85
3463 6784 7.009174 CCACAAACAACACTTTTCATTGTACTC 59.991 37.037 0.00 0.00 35.54 2.59
3464 6785 6.811170 CCACAAACAACACTTTTCATTGTACT 59.189 34.615 0.00 0.00 35.54 2.73
3465 6786 6.809196 TCCACAAACAACACTTTTCATTGTAC 59.191 34.615 0.00 0.00 35.54 2.90
3466 6787 6.925211 TCCACAAACAACACTTTTCATTGTA 58.075 32.000 0.00 0.00 35.54 2.41
3511 6832 4.686554 CCACTAGTGAAGCACAAGTTACTC 59.313 45.833 24.68 0.00 36.74 2.59
3530 6851 6.070881 TCCAATAGCATAAAATTTGCACCACT 60.071 34.615 3.58 0.00 42.62 4.00
3536 6857 8.611654 ATTGGATCCAATAGCATAAAATTTGC 57.388 30.769 33.99 0.00 43.92 3.68
3557 6878 3.899052 ACAATCAAGCCCATCAATTGG 57.101 42.857 5.42 0.00 46.00 3.16
3558 6879 5.327616 TGTACAATCAAGCCCATCAATTG 57.672 39.130 0.00 0.00 34.34 2.32
3559 6880 6.381994 AGAATGTACAATCAAGCCCATCAATT 59.618 34.615 13.30 0.00 0.00 2.32
3560 6881 5.895534 AGAATGTACAATCAAGCCCATCAAT 59.104 36.000 13.30 0.00 0.00 2.57
3561 6882 5.125900 CAGAATGTACAATCAAGCCCATCAA 59.874 40.000 13.30 0.00 0.00 2.57
3562 6883 4.641541 CAGAATGTACAATCAAGCCCATCA 59.358 41.667 13.30 0.00 0.00 3.07
3563 6884 5.179045 CAGAATGTACAATCAAGCCCATC 57.821 43.478 13.30 0.00 0.00 3.51
3579 6900 3.457610 AGCACCCAACAAAACAGAATG 57.542 42.857 0.00 0.00 46.00 2.67
3580 6901 4.215109 AGTAGCACCCAACAAAACAGAAT 58.785 39.130 0.00 0.00 0.00 2.40
3581 6902 3.626930 AGTAGCACCCAACAAAACAGAA 58.373 40.909 0.00 0.00 0.00 3.02
3582 6903 3.290948 AGTAGCACCCAACAAAACAGA 57.709 42.857 0.00 0.00 0.00 3.41
3583 6904 4.385358 AAAGTAGCACCCAACAAAACAG 57.615 40.909 0.00 0.00 0.00 3.16
3584 6905 4.810191 AAAAGTAGCACCCAACAAAACA 57.190 36.364 0.00 0.00 0.00 2.83
3585 6906 4.932799 ACAAAAAGTAGCACCCAACAAAAC 59.067 37.500 0.00 0.00 0.00 2.43
3586 6907 5.153950 ACAAAAAGTAGCACCCAACAAAA 57.846 34.783 0.00 0.00 0.00 2.44
3587 6908 4.810191 ACAAAAAGTAGCACCCAACAAA 57.190 36.364 0.00 0.00 0.00 2.83
3588 6909 5.508200 CTACAAAAAGTAGCACCCAACAA 57.492 39.130 0.00 0.00 43.40 2.83
3599 6920 8.492748 CGTAAATGCTTCTCACTACAAAAAGTA 58.507 33.333 0.00 0.00 0.00 2.24
3600 6921 7.352739 CGTAAATGCTTCTCACTACAAAAAGT 58.647 34.615 0.00 0.00 0.00 2.66
3601 6922 6.797033 CCGTAAATGCTTCTCACTACAAAAAG 59.203 38.462 0.00 0.00 0.00 2.27
3602 6923 6.261381 ACCGTAAATGCTTCTCACTACAAAAA 59.739 34.615 0.00 0.00 0.00 1.94
3603 6924 5.761234 ACCGTAAATGCTTCTCACTACAAAA 59.239 36.000 0.00 0.00 0.00 2.44
3604 6925 5.302360 ACCGTAAATGCTTCTCACTACAAA 58.698 37.500 0.00 0.00 0.00 2.83
3605 6926 4.890088 ACCGTAAATGCTTCTCACTACAA 58.110 39.130 0.00 0.00 0.00 2.41
3606 6927 4.530710 ACCGTAAATGCTTCTCACTACA 57.469 40.909 0.00 0.00 0.00 2.74
3607 6928 6.034683 CACTTACCGTAAATGCTTCTCACTAC 59.965 42.308 0.00 0.00 0.00 2.73
3608 6929 6.097356 CACTTACCGTAAATGCTTCTCACTA 58.903 40.000 0.00 0.00 0.00 2.74
3609 6930 4.929808 CACTTACCGTAAATGCTTCTCACT 59.070 41.667 0.00 0.00 0.00 3.41
3610 6931 4.092968 CCACTTACCGTAAATGCTTCTCAC 59.907 45.833 0.00 0.00 0.00 3.51
3611 6932 4.250464 CCACTTACCGTAAATGCTTCTCA 58.750 43.478 0.00 0.00 0.00 3.27
3612 6933 3.621715 CCCACTTACCGTAAATGCTTCTC 59.378 47.826 0.00 0.00 0.00 2.87
3613 6934 3.008704 ACCCACTTACCGTAAATGCTTCT 59.991 43.478 0.00 0.00 0.00 2.85
3614 6935 3.340928 ACCCACTTACCGTAAATGCTTC 58.659 45.455 0.00 0.00 0.00 3.86
3615 6936 3.428413 ACCCACTTACCGTAAATGCTT 57.572 42.857 0.00 0.00 0.00 3.91
3616 6937 3.428413 AACCCACTTACCGTAAATGCT 57.572 42.857 0.00 0.00 0.00 3.79
3617 6938 5.121105 AGATAACCCACTTACCGTAAATGC 58.879 41.667 0.00 0.00 0.00 3.56
3618 6939 7.619964 AAAGATAACCCACTTACCGTAAATG 57.380 36.000 0.00 0.00 0.00 2.32
3619 6940 9.910267 ATAAAAGATAACCCACTTACCGTAAAT 57.090 29.630 0.00 0.00 0.00 1.40
3620 6941 9.165035 CATAAAAGATAACCCACTTACCGTAAA 57.835 33.333 0.00 0.00 0.00 2.01
3621 6942 8.320617 ACATAAAAGATAACCCACTTACCGTAA 58.679 33.333 0.00 0.00 0.00 3.18
3622 6943 7.765360 CACATAAAAGATAACCCACTTACCGTA 59.235 37.037 0.00 0.00 0.00 4.02
3623 6944 6.596497 CACATAAAAGATAACCCACTTACCGT 59.404 38.462 0.00 0.00 0.00 4.83
3624 6945 6.037830 CCACATAAAAGATAACCCACTTACCG 59.962 42.308 0.00 0.00 0.00 4.02
3625 6946 6.888088 ACCACATAAAAGATAACCCACTTACC 59.112 38.462 0.00 0.00 0.00 2.85
3626 6947 7.627726 GCACCACATAAAAGATAACCCACTTAC 60.628 40.741 0.00 0.00 0.00 2.34
3627 6948 6.376018 GCACCACATAAAAGATAACCCACTTA 59.624 38.462 0.00 0.00 0.00 2.24
3628 6949 5.185056 GCACCACATAAAAGATAACCCACTT 59.815 40.000 0.00 0.00 0.00 3.16
3629 6950 4.705023 GCACCACATAAAAGATAACCCACT 59.295 41.667 0.00 0.00 0.00 4.00
3630 6951 4.461081 TGCACCACATAAAAGATAACCCAC 59.539 41.667 0.00 0.00 0.00 4.61
3631 6952 4.667573 TGCACCACATAAAAGATAACCCA 58.332 39.130 0.00 0.00 0.00 4.51
3632 6953 5.652994 TTGCACCACATAAAAGATAACCC 57.347 39.130 0.00 0.00 0.00 4.11
3645 6966 9.407380 AGAACAGAAATATATATTTGCACCACA 57.593 29.630 22.48 0.00 36.13 4.17
3646 6967 9.669353 CAGAACAGAAATATATATTTGCACCAC 57.331 33.333 22.48 9.17 36.13 4.16
3647 6968 9.407380 ACAGAACAGAAATATATATTTGCACCA 57.593 29.630 22.48 0.00 36.13 4.17
3648 6969 9.884465 GACAGAACAGAAATATATATTTGCACC 57.116 33.333 22.48 10.09 36.13 5.01
3649 6970 9.884465 GGACAGAACAGAAATATATATTTGCAC 57.116 33.333 22.48 10.40 36.13 4.57
3650 6971 9.625747 TGGACAGAACAGAAATATATATTTGCA 57.374 29.630 22.48 6.74 36.13 4.08
3651 6972 9.884465 GTGGACAGAACAGAAATATATATTTGC 57.116 33.333 22.48 14.45 36.13 3.68
3656 6977 9.647918 AGAGAGTGGACAGAACAGAAATATATA 57.352 33.333 0.00 0.00 0.00 0.86
3657 6978 8.420222 CAGAGAGTGGACAGAACAGAAATATAT 58.580 37.037 0.00 0.00 0.00 0.86
3658 6979 7.615757 TCAGAGAGTGGACAGAACAGAAATATA 59.384 37.037 0.00 0.00 0.00 0.86
3659 6980 6.438741 TCAGAGAGTGGACAGAACAGAAATAT 59.561 38.462 0.00 0.00 0.00 1.28
3660 6981 5.775195 TCAGAGAGTGGACAGAACAGAAATA 59.225 40.000 0.00 0.00 0.00 1.40
3661 6982 4.590647 TCAGAGAGTGGACAGAACAGAAAT 59.409 41.667 0.00 0.00 0.00 2.17
3662 6983 3.960755 TCAGAGAGTGGACAGAACAGAAA 59.039 43.478 0.00 0.00 0.00 2.52
3663 6984 3.566351 TCAGAGAGTGGACAGAACAGAA 58.434 45.455 0.00 0.00 0.00 3.02
3664 6985 3.229697 TCAGAGAGTGGACAGAACAGA 57.770 47.619 0.00 0.00 0.00 3.41
3665 6986 3.509184 TGATCAGAGAGTGGACAGAACAG 59.491 47.826 0.00 0.00 0.00 3.16
3666 6987 3.500343 TGATCAGAGAGTGGACAGAACA 58.500 45.455 0.00 0.00 0.00 3.18
3667 6988 4.681744 GATGATCAGAGAGTGGACAGAAC 58.318 47.826 0.09 0.00 0.00 3.01
3668 6989 3.379688 CGATGATCAGAGAGTGGACAGAA 59.620 47.826 0.09 0.00 0.00 3.02
3669 6990 2.948315 CGATGATCAGAGAGTGGACAGA 59.052 50.000 0.09 0.00 0.00 3.41
3670 6991 2.948315 TCGATGATCAGAGAGTGGACAG 59.052 50.000 0.09 0.00 0.00 3.51
3671 6992 3.004752 TCGATGATCAGAGAGTGGACA 57.995 47.619 0.09 0.00 0.00 4.02
3672 6993 3.057596 GGATCGATGATCAGAGAGTGGAC 60.058 52.174 0.54 0.00 40.50 4.02
3673 6994 3.153130 GGATCGATGATCAGAGAGTGGA 58.847 50.000 0.54 0.00 40.50 4.02
3674 6995 3.156293 AGGATCGATGATCAGAGAGTGG 58.844 50.000 0.54 0.00 40.50 4.00
3675 6996 4.852134 AAGGATCGATGATCAGAGAGTG 57.148 45.455 0.54 0.00 40.50 3.51
3676 6997 4.501229 GCAAAGGATCGATGATCAGAGAGT 60.501 45.833 0.54 0.00 40.50 3.24
3677 6998 3.989167 GCAAAGGATCGATGATCAGAGAG 59.011 47.826 0.54 0.00 40.50 3.20
3678 6999 3.385755 TGCAAAGGATCGATGATCAGAGA 59.614 43.478 0.54 3.33 40.50 3.10
3679 7000 3.725490 TGCAAAGGATCGATGATCAGAG 58.275 45.455 0.54 0.00 40.50 3.35
3680 7001 3.133542 ACTGCAAAGGATCGATGATCAGA 59.866 43.478 0.54 0.00 40.50 3.27
3681 7002 3.247886 CACTGCAAAGGATCGATGATCAG 59.752 47.826 0.54 4.08 40.50 2.90
3682 7003 3.200483 CACTGCAAAGGATCGATGATCA 58.800 45.455 0.54 0.00 40.50 2.92
3683 7004 3.002042 CACACTGCAAAGGATCGATGATC 59.998 47.826 0.54 0.00 38.25 2.92
3684 7005 2.941064 CACACTGCAAAGGATCGATGAT 59.059 45.455 0.54 0.00 0.00 2.45
3685 7006 2.349590 CACACTGCAAAGGATCGATGA 58.650 47.619 0.54 0.00 0.00 2.92
3686 7007 1.202110 GCACACTGCAAAGGATCGATG 60.202 52.381 0.54 0.00 44.26 3.84
3687 7008 1.089920 GCACACTGCAAAGGATCGAT 58.910 50.000 0.00 0.00 44.26 3.59
3688 7009 1.291184 CGCACACTGCAAAGGATCGA 61.291 55.000 0.00 0.00 45.36 3.59
3689 7010 1.133253 CGCACACTGCAAAGGATCG 59.867 57.895 0.00 0.00 45.36 3.69
3690 7011 1.237285 ACCGCACACTGCAAAGGATC 61.237 55.000 0.00 0.00 45.36 3.36
3691 7012 0.823356 AACCGCACACTGCAAAGGAT 60.823 50.000 0.00 0.00 45.36 3.24
3692 7013 1.453015 AACCGCACACTGCAAAGGA 60.453 52.632 0.00 0.00 45.36 3.36
3693 7014 1.299316 CAACCGCACACTGCAAAGG 60.299 57.895 0.00 0.00 45.36 3.11
3694 7015 1.299316 CCAACCGCACACTGCAAAG 60.299 57.895 0.00 0.00 45.36 2.77
3695 7016 1.315981 TTCCAACCGCACACTGCAAA 61.316 50.000 0.00 0.00 45.36 3.68
3696 7017 1.315981 TTTCCAACCGCACACTGCAA 61.316 50.000 0.00 0.00 45.36 4.08
3697 7018 1.750780 TTTCCAACCGCACACTGCA 60.751 52.632 0.00 0.00 45.36 4.41
3698 7019 1.299089 GTTTCCAACCGCACACTGC 60.299 57.895 0.00 0.00 40.69 4.40
3699 7020 0.029300 CAGTTTCCAACCGCACACTG 59.971 55.000 0.00 0.00 0.00 3.66
3700 7021 1.101049 CCAGTTTCCAACCGCACACT 61.101 55.000 0.00 0.00 0.00 3.55
3701 7022 1.098712 TCCAGTTTCCAACCGCACAC 61.099 55.000 0.00 0.00 0.00 3.82
3702 7023 0.394488 TTCCAGTTTCCAACCGCACA 60.394 50.000 0.00 0.00 0.00 4.57
3703 7024 0.741915 TTTCCAGTTTCCAACCGCAC 59.258 50.000 0.00 0.00 0.00 5.34
3704 7025 1.028905 CTTTCCAGTTTCCAACCGCA 58.971 50.000 0.00 0.00 0.00 5.69
3705 7026 1.314730 TCTTTCCAGTTTCCAACCGC 58.685 50.000 0.00 0.00 0.00 5.68
3706 7027 3.568007 TGATTCTTTCCAGTTTCCAACCG 59.432 43.478 0.00 0.00 0.00 4.44
3707 7028 5.529581 TTGATTCTTTCCAGTTTCCAACC 57.470 39.130 0.00 0.00 0.00 3.77
3708 7029 4.984785 GCTTGATTCTTTCCAGTTTCCAAC 59.015 41.667 0.00 0.00 0.00 3.77
3709 7030 4.895297 AGCTTGATTCTTTCCAGTTTCCAA 59.105 37.500 0.00 0.00 0.00 3.53
3710 7031 4.279169 CAGCTTGATTCTTTCCAGTTTCCA 59.721 41.667 0.00 0.00 0.00 3.53
3711 7032 4.802999 CAGCTTGATTCTTTCCAGTTTCC 58.197 43.478 0.00 0.00 0.00 3.13
3712 7033 4.233005 GCAGCTTGATTCTTTCCAGTTTC 58.767 43.478 0.00 0.00 0.00 2.78
3713 7034 3.638160 TGCAGCTTGATTCTTTCCAGTTT 59.362 39.130 0.00 0.00 0.00 2.66
3714 7035 3.225104 TGCAGCTTGATTCTTTCCAGTT 58.775 40.909 0.00 0.00 0.00 3.16
3715 7036 2.867624 TGCAGCTTGATTCTTTCCAGT 58.132 42.857 0.00 0.00 0.00 4.00
3716 7037 3.442625 TGATGCAGCTTGATTCTTTCCAG 59.557 43.478 2.53 0.00 0.00 3.86
3717 7038 3.423749 TGATGCAGCTTGATTCTTTCCA 58.576 40.909 2.53 0.00 0.00 3.53
3718 7039 3.693085 TCTGATGCAGCTTGATTCTTTCC 59.307 43.478 2.53 0.00 0.00 3.13
3719 7040 4.731193 GCTCTGATGCAGCTTGATTCTTTC 60.731 45.833 2.53 0.00 33.75 2.62
3720 7041 3.128938 GCTCTGATGCAGCTTGATTCTTT 59.871 43.478 2.53 0.00 33.75 2.52
3721 7042 2.683867 GCTCTGATGCAGCTTGATTCTT 59.316 45.455 2.53 0.00 33.75 2.52
3722 7043 2.290464 GCTCTGATGCAGCTTGATTCT 58.710 47.619 2.53 0.00 33.75 2.40
3723 7044 1.334243 GGCTCTGATGCAGCTTGATTC 59.666 52.381 2.53 0.00 37.05 2.52
3724 7045 1.340697 TGGCTCTGATGCAGCTTGATT 60.341 47.619 2.53 0.00 37.05 2.57
3725 7046 0.255033 TGGCTCTGATGCAGCTTGAT 59.745 50.000 2.53 0.00 37.05 2.57
3726 7047 0.675837 GTGGCTCTGATGCAGCTTGA 60.676 55.000 2.53 0.51 37.05 3.02
3727 7048 0.677098 AGTGGCTCTGATGCAGCTTG 60.677 55.000 2.53 0.00 37.05 4.01
3728 7049 0.037877 AAGTGGCTCTGATGCAGCTT 59.962 50.000 2.53 0.00 37.05 3.74
3729 7050 0.037877 AAAGTGGCTCTGATGCAGCT 59.962 50.000 2.53 0.00 37.05 4.24
3730 7051 0.170561 CAAAGTGGCTCTGATGCAGC 59.829 55.000 0.00 0.00 36.02 5.25
3731 7052 1.199327 CACAAAGTGGCTCTGATGCAG 59.801 52.381 0.00 0.00 34.04 4.41
3732 7053 1.241165 CACAAAGTGGCTCTGATGCA 58.759 50.000 0.00 0.00 34.04 3.96
3742 7063 9.832445 AACTACATATATAGTTCCACAAAGTGG 57.168 33.333 9.87 9.87 43.32 4.00
3769 7090 8.253113 GGTTGACCACAATCTATCAATTTCATT 58.747 33.333 0.00 0.00 38.32 2.57
3770 7091 7.616935 AGGTTGACCACAATCTATCAATTTCAT 59.383 33.333 2.56 0.00 44.45 2.57
3771 7092 6.947733 AGGTTGACCACAATCTATCAATTTCA 59.052 34.615 2.56 0.00 44.45 2.69
3772 7093 7.253422 CAGGTTGACCACAATCTATCAATTTC 58.747 38.462 2.56 0.00 44.48 2.17
3773 7094 6.153340 CCAGGTTGACCACAATCTATCAATTT 59.847 38.462 2.56 0.00 44.48 1.82
3774 7095 5.653769 CCAGGTTGACCACAATCTATCAATT 59.346 40.000 2.56 0.00 44.48 2.32
3775 7096 5.044919 TCCAGGTTGACCACAATCTATCAAT 60.045 40.000 2.56 0.00 44.48 2.57
3776 7097 4.288366 TCCAGGTTGACCACAATCTATCAA 59.712 41.667 2.56 0.00 44.48 2.57
3777 7098 3.843619 TCCAGGTTGACCACAATCTATCA 59.156 43.478 2.56 0.00 44.48 2.15
3778 7099 4.487714 TCCAGGTTGACCACAATCTATC 57.512 45.455 2.56 0.00 44.48 2.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.