Multiple sequence alignment - TraesCS5A01G161300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G161300 chr5A 100.000 9450 0 0 1 9450 343448967 343458416 0.000000e+00 17451.0
1 TraesCS5A01G161300 chr5A 84.264 197 28 3 3051 3246 309085802 309085608 1.250000e-43 189.0
2 TraesCS5A01G161300 chr5A 95.000 120 5 1 8899 9018 505508730 505508848 4.510000e-43 187.0
3 TraesCS5A01G161300 chr5A 97.297 111 2 1 8899 9009 591434998 591434889 4.510000e-43 187.0
4 TraesCS5A01G161300 chr5A 100.000 30 0 0 8570 8599 343457478 343457507 1.000000e-03 56.5
5 TraesCS5A01G161300 chr5A 100.000 30 0 0 8512 8541 343457536 343457565 1.000000e-03 56.5
6 TraesCS5A01G161300 chr5D 96.422 4220 117 16 891 5101 258639401 258643595 0.000000e+00 6926.0
7 TraesCS5A01G161300 chr5D 96.861 2899 45 17 5100 7982 258643762 258646630 0.000000e+00 4807.0
8 TraesCS5A01G161300 chr5D 90.515 2214 116 37 6359 8524 15676285 15674118 0.000000e+00 2839.0
9 TraesCS5A01G161300 chr5D 91.898 864 38 9 5506 6363 15677157 15676320 0.000000e+00 1179.0
10 TraesCS5A01G161300 chr5D 88.706 788 23 35 8114 8897 258646639 258647364 0.000000e+00 902.0
11 TraesCS5A01G161300 chr5D 95.333 450 14 2 9008 9450 258647367 258647816 0.000000e+00 708.0
12 TraesCS5A01G161300 chr5D 95.072 345 14 3 5234 5577 15677500 15677158 3.000000e-149 540.0
13 TraesCS5A01G161300 chr5D 83.505 194 26 5 3046 3236 41890169 41890359 9.750000e-40 176.0
14 TraesCS5A01G161300 chr5D 89.362 94 5 3 5103 5191 15723871 15723778 7.760000e-21 113.0
15 TraesCS5A01G161300 chr5B 96.274 4241 114 28 890 5101 292731923 292736148 0.000000e+00 6916.0
16 TraesCS5A01G161300 chr5B 96.733 3459 62 21 5100 8541 292736315 292739739 0.000000e+00 5714.0
17 TraesCS5A01G161300 chr5B 94.794 2497 50 42 6400 8876 292737584 292740020 0.000000e+00 3818.0
18 TraesCS5A01G161300 chr5B 87.011 870 107 2 1 864 44660379 44661248 0.000000e+00 976.0
19 TraesCS5A01G161300 chr5B 94.702 453 14 4 9008 9450 292740038 292740490 0.000000e+00 695.0
20 TraesCS5A01G161300 chr5B 80.444 225 40 4 3014 3236 69148127 69148349 1.630000e-37 169.0
21 TraesCS5A01G161300 chr3A 89.961 3078 167 55 5506 8511 670851711 670854718 0.000000e+00 3842.0
22 TraesCS5A01G161300 chr3A 96.078 357 11 3 5221 5577 670851357 670851710 6.360000e-161 579.0
23 TraesCS5A01G161300 chr3A 93.893 131 6 1 5103 5231 670849812 670849942 7.490000e-46 196.0
24 TraesCS5A01G161300 chr3A 98.165 109 2 0 8902 9010 233523254 233523146 3.480000e-44 191.0
25 TraesCS5A01G161300 chrUn 90.515 2214 116 37 6359 8524 67699625 67697458 0.000000e+00 2839.0
26 TraesCS5A01G161300 chrUn 91.898 864 38 9 5506 6363 67700497 67699660 0.000000e+00 1179.0
27 TraesCS5A01G161300 chrUn 95.072 345 14 3 5234 5577 67700840 67700498 3.000000e-149 540.0
28 TraesCS5A01G161300 chr4A 89.433 2205 120 42 6359 8511 586497237 586495094 0.000000e+00 2676.0
29 TraesCS5A01G161300 chr4A 94.550 1266 50 8 5103 6363 586498521 586497270 0.000000e+00 1938.0
30 TraesCS5A01G161300 chr4A 79.976 829 120 24 2426 3236 38680070 38679270 3.830000e-158 569.0
31 TraesCS5A01G161300 chr1D 95.287 870 34 2 1 863 457787294 457788163 0.000000e+00 1373.0
32 TraesCS5A01G161300 chr7B 93.303 866 36 8 5506 6363 639268031 639267180 0.000000e+00 1258.0
33 TraesCS5A01G161300 chr7B 94.969 477 20 3 5103 5577 639268506 639268032 0.000000e+00 745.0
34 TraesCS5A01G161300 chr7B 82.822 652 85 15 2490 3123 610330906 610331548 8.290000e-155 558.0
35 TraesCS5A01G161300 chr6B 85.829 868 111 6 1 858 706862386 706863251 0.000000e+00 911.0
36 TraesCS5A01G161300 chr2B 85.632 870 116 5 1 863 680411488 680410621 0.000000e+00 905.0
37 TraesCS5A01G161300 chr2B 81.778 686 107 12 2502 3174 652852439 652851759 8.290000e-155 558.0
38 TraesCS5A01G161300 chr1B 85.469 874 113 10 1 863 561472201 561471331 0.000000e+00 898.0
39 TraesCS5A01G161300 chr1B 90.137 365 34 2 3707 4069 283904425 283904061 3.090000e-129 473.0
40 TraesCS5A01G161300 chr3B 85.386 869 115 3 1 863 749964152 749965014 0.000000e+00 891.0
41 TraesCS5A01G161300 chr3B 87.954 523 58 1 1 518 584579369 584579891 6.270000e-171 612.0
42 TraesCS5A01G161300 chr3B 86.649 367 45 4 500 863 127937937 127937572 4.110000e-108 403.0
43 TraesCS5A01G161300 chr3B 85.387 349 43 3 514 862 584588364 584588704 1.170000e-93 355.0
44 TraesCS5A01G161300 chr2D 83.261 687 98 10 2501 3173 545957053 545956370 4.850000e-172 616.0
45 TraesCS5A01G161300 chr2D 88.360 189 18 4 3050 3236 521874611 521874797 3.430000e-54 224.0
46 TraesCS5A01G161300 chr2D 85.135 74 10 1 2917 2989 190573905 190573832 3.660000e-09 75.0
47 TraesCS5A01G161300 chr1A 88.587 184 19 2 3050 3232 107469583 107469765 1.240000e-53 222.0
48 TraesCS5A01G161300 chr2A 84.737 190 27 2 3051 3239 16777640 16777452 1.250000e-43 189.0
49 TraesCS5A01G161300 chr2A 93.333 120 8 0 8903 9022 674047068 674046949 2.710000e-40 178.0
50 TraesCS5A01G161300 chr7A 96.429 112 4 0 8898 9009 535535369 535535480 1.620000e-42 185.0
51 TraesCS5A01G161300 chr7A 94.872 117 4 2 8903 9017 25411110 25410994 2.100000e-41 182.0
52 TraesCS5A01G161300 chr7A 92.857 126 7 2 8900 9023 133053226 133053351 2.100000e-41 182.0
53 TraesCS5A01G161300 chr7A 92.742 124 5 4 8902 9023 703568719 703568598 9.750000e-40 176.0
54 TraesCS5A01G161300 chr7D 93.443 122 5 3 8903 9022 419562440 419562320 2.710000e-40 178.0
55 TraesCS5A01G161300 chr6A 94.595 37 2 0 2949 2985 602166872 602166836 3.690000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G161300 chr5A 343448967 343458416 9449 False 5854.666667 17451 100.000000 1 9450 3 chr5A.!!$F2 9449
1 TraesCS5A01G161300 chr5D 258639401 258647816 8415 False 3335.750000 6926 94.330500 891 9450 4 chr5D.!!$F2 8559
2 TraesCS5A01G161300 chr5D 15674118 15677500 3382 True 1519.333333 2839 92.495000 5234 8524 3 chr5D.!!$R2 3290
3 TraesCS5A01G161300 chr5B 292731923 292740490 8567 False 4285.750000 6916 95.625750 890 9450 4 chr5B.!!$F3 8560
4 TraesCS5A01G161300 chr5B 44660379 44661248 869 False 976.000000 976 87.011000 1 864 1 chr5B.!!$F1 863
5 TraesCS5A01G161300 chr3A 670849812 670854718 4906 False 1539.000000 3842 93.310667 5103 8511 3 chr3A.!!$F1 3408
6 TraesCS5A01G161300 chrUn 67697458 67700840 3382 True 1519.333333 2839 92.495000 5234 8524 3 chrUn.!!$R1 3290
7 TraesCS5A01G161300 chr4A 586495094 586498521 3427 True 2307.000000 2676 91.991500 5103 8511 2 chr4A.!!$R2 3408
8 TraesCS5A01G161300 chr4A 38679270 38680070 800 True 569.000000 569 79.976000 2426 3236 1 chr4A.!!$R1 810
9 TraesCS5A01G161300 chr1D 457787294 457788163 869 False 1373.000000 1373 95.287000 1 863 1 chr1D.!!$F1 862
10 TraesCS5A01G161300 chr7B 639267180 639268506 1326 True 1001.500000 1258 94.136000 5103 6363 2 chr7B.!!$R1 1260
11 TraesCS5A01G161300 chr7B 610330906 610331548 642 False 558.000000 558 82.822000 2490 3123 1 chr7B.!!$F1 633
12 TraesCS5A01G161300 chr6B 706862386 706863251 865 False 911.000000 911 85.829000 1 858 1 chr6B.!!$F1 857
13 TraesCS5A01G161300 chr2B 680410621 680411488 867 True 905.000000 905 85.632000 1 863 1 chr2B.!!$R2 862
14 TraesCS5A01G161300 chr2B 652851759 652852439 680 True 558.000000 558 81.778000 2502 3174 1 chr2B.!!$R1 672
15 TraesCS5A01G161300 chr1B 561471331 561472201 870 True 898.000000 898 85.469000 1 863 1 chr1B.!!$R2 862
16 TraesCS5A01G161300 chr3B 749964152 749965014 862 False 891.000000 891 85.386000 1 863 1 chr3B.!!$F3 862
17 TraesCS5A01G161300 chr3B 584579369 584579891 522 False 612.000000 612 87.954000 1 518 1 chr3B.!!$F1 517
18 TraesCS5A01G161300 chr2D 545956370 545957053 683 True 616.000000 616 83.261000 2501 3173 1 chr2D.!!$R2 672

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
951 962 0.035881 TAGTGTGACGTCCGTCTCCT 59.964 55.000 19.30 15.76 44.80 3.69 F
1764 1786 0.112218 TGCTAGCTCCCCTGCAAAAA 59.888 50.000 17.23 0.00 34.99 1.94 F
2456 2482 1.014352 GCCAAGATACGCAAATCCGT 58.986 50.000 0.00 0.00 44.62 4.69 F
2855 2891 0.179156 GCGAACATTGATGGCCACTG 60.179 55.000 8.16 6.21 0.00 3.66 F
3568 3656 2.353406 CCTGCAAATTTTCAGCCTCTGG 60.353 50.000 11.81 0.00 31.51 3.86 F
4476 4573 1.755380 GTAGGCCTTGATCACGTACCT 59.245 52.381 12.58 13.45 0.00 3.08 F
5137 5402 3.062042 CAAGCTGCAGAAATTTGGGAAC 58.938 45.455 20.43 0.00 0.00 3.62 F
6382 8269 1.191535 TATAGCGCTGTGTGTTCCCT 58.808 50.000 22.90 0.00 0.00 4.20 F
8121 10070 2.554142 TCTCTGCGCATAAACTCATGG 58.446 47.619 12.24 0.00 0.00 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2456 2482 0.468585 ACCGCGGATGTATAGGGACA 60.469 55.000 35.90 0.00 0.00 4.02 R
2617 2645 0.950071 GCGTTTACACAACCCCGCTA 60.950 55.000 0.00 0.00 38.22 4.26 R
3263 3348 1.661463 AGGCTGATGAGGGACAAAGA 58.339 50.000 0.00 0.00 0.00 2.52 R
4461 4558 3.526931 ACATCAGGTACGTGATCAAGG 57.473 47.619 24.44 16.83 34.81 3.61 R
5219 5486 2.625737 CATGGCTCGAAATCAGTGTCT 58.374 47.619 0.00 0.00 0.00 3.41 R
5769 7610 2.173519 CTTGTCAACCAGCCCATCAAT 58.826 47.619 0.00 0.00 0.00 2.57 R
6749 8654 4.780021 ACTCTCACTTATTCCACTGGTCAT 59.220 41.667 0.00 0.00 0.00 3.06 R
8203 10152 0.933097 GCACATGACACGCCTATCTG 59.067 55.000 0.00 0.00 0.00 2.90 R
8980 10935 1.060122 CCGTTCCAAATTACTCGTCGC 59.940 52.381 0.00 0.00 0.00 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 6.625873 TTGATACACTGTACACATGCAAAA 57.374 33.333 0.00 0.00 0.00 2.44
71 72 5.762711 TGATACACTGTACACATGCAAAACT 59.237 36.000 0.00 0.00 0.00 2.66
86 87 5.976458 TGCAAAACTTTTCTGGAATGAAGT 58.024 33.333 0.00 0.00 34.03 3.01
165 166 8.157476 AGGGATATTATATGTGACAACAGGTTC 58.843 37.037 0.00 0.00 40.39 3.62
168 169 1.803334 TATGTGACAACAGGTTCGCC 58.197 50.000 0.00 0.00 40.39 5.54
169 170 0.179032 ATGTGACAACAGGTTCGCCA 60.179 50.000 0.00 0.00 40.39 5.69
406 408 6.727697 TGATGGAGCCATTGATATTCTCTCTA 59.272 38.462 3.11 0.00 36.70 2.43
497 504 2.357009 GTGACAGACCCATTGATCATGC 59.643 50.000 0.00 0.00 0.00 4.06
573 582 3.869832 CGAGTGACGATGGAGACTAACTA 59.130 47.826 0.00 0.00 45.77 2.24
595 604 3.450457 ACTTGGCTTTGGTGAATTTGTGA 59.550 39.130 0.00 0.00 0.00 3.58
614 623 4.696877 TGTGAAATTCTCGTCATGCAGAAT 59.303 37.500 8.00 8.00 40.43 2.40
743 753 1.080974 GCAAAGCGAGCTTGCACAT 60.081 52.632 27.59 10.70 36.26 3.21
745 755 1.774639 CAAAGCGAGCTTGCACATTT 58.225 45.000 27.59 16.12 36.26 2.32
749 759 0.518636 GCGAGCTTGCACATTTCTGA 59.481 50.000 21.53 0.00 34.15 3.27
755 765 5.557891 AGCTTGCACATTTCTGATTACTC 57.442 39.130 0.00 0.00 0.00 2.59
775 785 0.464036 ACAGTTGTCTGAACTCGCCA 59.536 50.000 2.17 0.00 43.76 5.69
799 809 1.079503 CGTTCTTGGTTAGCAGCCTC 58.920 55.000 0.00 0.00 0.00 4.70
922 932 3.712016 TTTCCAACTTCGATGGATCCA 57.288 42.857 18.88 18.88 45.99 3.41
945 956 0.861866 CGCAGATAGTGTGACGTCCG 60.862 60.000 14.12 0.85 39.20 4.79
946 957 0.170561 GCAGATAGTGTGACGTCCGT 59.829 55.000 14.12 0.00 0.00 4.69
947 958 1.794437 GCAGATAGTGTGACGTCCGTC 60.794 57.143 14.12 12.66 44.77 4.79
950 961 1.063764 GATAGTGTGACGTCCGTCTCC 59.936 57.143 19.30 11.11 44.80 3.71
951 962 0.035881 TAGTGTGACGTCCGTCTCCT 59.964 55.000 19.30 15.76 44.80 3.69
952 963 1.209640 GTGTGACGTCCGTCTCCTC 59.790 63.158 19.30 9.10 44.80 3.71
953 964 1.970114 TGTGACGTCCGTCTCCTCC 60.970 63.158 19.30 4.76 44.80 4.30
954 965 2.745100 TGACGTCCGTCTCCTCCG 60.745 66.667 19.30 0.00 44.80 4.63
955 966 4.176851 GACGTCCGTCTCCTCCGC 62.177 72.222 12.31 0.00 41.57 5.54
1108 1119 1.062044 GTACCAATCTCCCCTCCTCCT 60.062 57.143 0.00 0.00 0.00 3.69
1141 1152 0.628522 TGACTCCTCCCCTCTCTCTG 59.371 60.000 0.00 0.00 0.00 3.35
1182 1197 2.853430 TCTTTGGCCTGACCCCTTATA 58.147 47.619 3.32 0.00 37.83 0.98
1183 1198 3.403322 TCTTTGGCCTGACCCCTTATAT 58.597 45.455 3.32 0.00 37.83 0.86
1202 1217 3.569250 ATGGTTTCGTGGTGTAAATGC 57.431 42.857 0.00 0.00 0.00 3.56
1231 1249 2.883888 GCTTGGGTGCCTCCTGATTTTA 60.884 50.000 0.00 0.00 36.25 1.52
1246 1264 5.075858 TGATTTTACACGGTAGATTCGGT 57.924 39.130 0.00 0.00 0.00 4.69
1257 1278 2.496899 AGATTCGGTGCTTGATTGGT 57.503 45.000 0.00 0.00 0.00 3.67
1303 1324 1.559682 GGGGATGTAGGCTCTTTGACA 59.440 52.381 0.00 0.00 0.00 3.58
1335 1356 2.724454 TCTGTTCGGGTTTGTTTTGGA 58.276 42.857 0.00 0.00 0.00 3.53
1402 1423 4.858850 TGTAGATGGCTTGTCAATGGATT 58.141 39.130 0.00 0.00 0.00 3.01
1425 1447 9.833917 GATTTTACTCTAACCTAGTTAATGCCT 57.166 33.333 0.00 0.00 0.00 4.75
1430 1452 8.785184 ACTCTAACCTAGTTAATGCCTATCTT 57.215 34.615 0.00 0.00 0.00 2.40
1432 1454 7.883217 TCTAACCTAGTTAATGCCTATCTTCG 58.117 38.462 0.00 0.00 0.00 3.79
1440 1462 4.622701 AATGCCTATCTTCGCTTGAAAC 57.377 40.909 0.00 0.00 0.00 2.78
1454 1476 3.430790 GCTTGAAACTTTCCAGGTTTGCT 60.431 43.478 5.09 0.00 37.07 3.91
1462 1484 4.463891 ACTTTCCAGGTTTGCTATTCCATG 59.536 41.667 0.00 0.00 0.00 3.66
1489 1511 5.862678 ATAGCTCAAGTCCTTCCTAACTC 57.137 43.478 0.00 0.00 0.00 3.01
1743 1765 2.319844 CAAGGTTTTTCTTGCCCTCCT 58.680 47.619 0.00 0.00 37.84 3.69
1754 1776 0.833834 TGCCCTCCTATGCTAGCTCC 60.834 60.000 17.23 0.00 0.00 4.70
1757 1779 0.116143 CCTCCTATGCTAGCTCCCCT 59.884 60.000 17.23 0.00 0.00 4.79
1764 1786 0.112218 TGCTAGCTCCCCTGCAAAAA 59.888 50.000 17.23 0.00 34.99 1.94
1928 1952 5.449177 CCCAGTTCTCAAAAGAGTTTGTGAC 60.449 44.000 4.04 0.99 43.40 3.67
2190 2216 8.449251 TGAATATTCCAATCGATTCATGTCAA 57.551 30.769 7.92 0.00 34.27 3.18
2413 2439 3.508762 CAAAGTGAGCATGCCAGAAATC 58.491 45.455 15.66 4.60 0.00 2.17
2456 2482 1.014352 GCCAAGATACGCAAATCCGT 58.986 50.000 0.00 0.00 44.62 4.69
2540 2566 2.906691 TTTCCCATTTGCAACCACAG 57.093 45.000 0.00 0.00 0.00 3.66
2556 2584 7.617723 TGCAACCACAGACCCTATATTTAAAAT 59.382 33.333 0.00 0.00 0.00 1.82
2829 2865 4.412796 TTGTGAAGGAGCTCATATCCTG 57.587 45.455 17.19 0.00 46.75 3.86
2855 2891 0.179156 GCGAACATTGATGGCCACTG 60.179 55.000 8.16 6.21 0.00 3.66
2870 2912 4.010349 GGCCACTGCTAACAATAAGAACT 58.990 43.478 0.00 0.00 37.74 3.01
2923 2965 4.037327 TCATTCTCATCAAGCTCCTACGAG 59.963 45.833 0.00 0.00 39.33 4.18
3261 3346 6.702972 TTGCATTTCACATTTTTCGGTATG 57.297 33.333 0.00 0.00 0.00 2.39
3263 3348 6.219473 TGCATTTCACATTTTTCGGTATGTT 58.781 32.000 0.00 0.00 32.88 2.71
3568 3656 2.353406 CCTGCAAATTTTCAGCCTCTGG 60.353 50.000 11.81 0.00 31.51 3.86
3809 3899 7.313646 TGATCGTCCTCTAACTTTAACTGAAG 58.686 38.462 0.00 0.00 0.00 3.02
3989 4079 4.217118 GGGCACACATGATAAGAATGGATC 59.783 45.833 0.00 0.00 0.00 3.36
4098 4193 9.528847 CGATGATGTTTTGATAATAACGTATGG 57.471 33.333 0.00 0.00 0.00 2.74
4241 4336 4.211125 TCCTGGTTTTCTTGTAACATGCA 58.789 39.130 0.00 0.00 0.00 3.96
4476 4573 1.755380 GTAGGCCTTGATCACGTACCT 59.245 52.381 12.58 13.45 0.00 3.08
4689 4786 9.884814 AACTAGGTCTTCTTATATGGAGTATGT 57.115 33.333 0.00 0.00 0.00 2.29
4809 4906 6.870965 CGCAGAAATGGCTATCTATCTAACTT 59.129 38.462 0.00 0.00 0.00 2.66
4865 4962 4.010349 ACTAGCAGTTTTGACCTATTGGC 58.990 43.478 0.00 0.00 36.63 4.52
4977 5074 6.887013 AGTTTCTCAGTTCTCATGATAGCAT 58.113 36.000 0.00 0.00 34.29 3.79
5025 5122 3.787634 CGATCGGTGAAAAATTGATGCAG 59.212 43.478 7.38 0.00 0.00 4.41
5093 5190 9.673454 CTTTGGTTGTAAAATTACCAGTACTTC 57.327 33.333 0.00 0.00 42.48 3.01
5137 5402 3.062042 CAAGCTGCAGAAATTTGGGAAC 58.938 45.455 20.43 0.00 0.00 3.62
5177 5444 7.540745 GCGTATTAAACATGGTTTCTGTTTCAT 59.459 33.333 0.00 3.46 43.72 2.57
6030 7872 7.230510 TGTCAGCTTTGAAAAAGGTATGTGTAT 59.769 33.333 4.28 0.00 0.00 2.29
6382 8269 1.191535 TATAGCGCTGTGTGTTCCCT 58.808 50.000 22.90 0.00 0.00 4.20
6749 8654 2.935238 GCGGAGAAAGGCATGTGTAAGA 60.935 50.000 0.00 0.00 0.00 2.10
6867 8785 6.477033 CGTTCAGACAGAATAATTCCGAGATT 59.523 38.462 0.00 0.00 38.76 2.40
7234 9160 7.872113 ATTTTAGTATTTCTCTCCTTGCAGG 57.128 36.000 0.00 0.00 36.46 4.85
7235 9161 3.274095 AGTATTTCTCTCCTTGCAGGC 57.726 47.619 0.00 0.00 34.61 4.85
7236 9162 2.843113 AGTATTTCTCTCCTTGCAGGCT 59.157 45.455 0.00 0.00 34.61 4.58
7651 9588 9.630098 CAATGCACAAAGTTACTTCTCATTTAT 57.370 29.630 0.00 0.00 0.00 1.40
7678 9615 9.494479 CAATCATGTATTTGTTGCTAGTAGTTG 57.506 33.333 0.00 0.00 0.00 3.16
7782 9720 8.024285 TGTTATTTATTTTTGAGCCAACTACGG 58.976 33.333 0.00 0.00 0.00 4.02
8121 10070 2.554142 TCTCTGCGCATAAACTCATGG 58.446 47.619 12.24 0.00 0.00 3.66
8145 10094 3.228188 TCCTTGTGGATTGTTGCTTCT 57.772 42.857 0.00 0.00 37.46 2.85
8203 10152 0.329596 ACCTCATTCAACCCCTGCTC 59.670 55.000 0.00 0.00 0.00 4.26
8377 10326 2.373335 TTTTGCTCTGCCTTTGGGTA 57.627 45.000 0.00 0.00 34.45 3.69
8541 10491 8.458573 AATAAAGGCAAATGTTATGGACGATA 57.541 30.769 0.00 0.00 0.00 2.92
8542 10492 5.751243 AAGGCAAATGTTATGGACGATAC 57.249 39.130 0.00 0.00 0.00 2.24
8543 10493 4.134563 AGGCAAATGTTATGGACGATACC 58.865 43.478 0.00 0.00 0.00 2.73
8544 10494 3.880490 GGCAAATGTTATGGACGATACCA 59.120 43.478 0.00 0.00 44.41 3.25
8545 10495 4.336993 GGCAAATGTTATGGACGATACCAA 59.663 41.667 0.00 0.00 43.47 3.67
8546 10496 5.163602 GGCAAATGTTATGGACGATACCAAA 60.164 40.000 0.00 0.00 43.47 3.28
8547 10497 6.460953 GGCAAATGTTATGGACGATACCAAAT 60.461 38.462 0.00 0.00 43.47 2.32
8548 10498 7.255312 GGCAAATGTTATGGACGATACCAAATA 60.255 37.037 0.00 0.00 43.47 1.40
8549 10499 8.132362 GCAAATGTTATGGACGATACCAAATAA 58.868 33.333 0.00 0.00 43.47 1.40
8552 10502 7.795482 TGTTATGGACGATACCAAATAAAGG 57.205 36.000 0.00 0.00 43.47 3.11
8553 10503 6.261381 TGTTATGGACGATACCAAATAAAGGC 59.739 38.462 0.00 0.00 43.47 4.35
8554 10504 4.223556 TGGACGATACCAAATAAAGGCA 57.776 40.909 0.00 0.00 36.96 4.75
8555 10505 4.590918 TGGACGATACCAAATAAAGGCAA 58.409 39.130 0.00 0.00 36.96 4.52
8556 10506 5.010933 TGGACGATACCAAATAAAGGCAAA 58.989 37.500 0.00 0.00 36.96 3.68
8557 10507 5.654650 TGGACGATACCAAATAAAGGCAAAT 59.345 36.000 0.00 0.00 36.96 2.32
8558 10508 5.977129 GGACGATACCAAATAAAGGCAAATG 59.023 40.000 0.00 0.00 0.00 2.32
8559 10509 6.405397 GGACGATACCAAATAAAGGCAAATGT 60.405 38.462 0.00 0.00 0.00 2.71
8560 10510 6.930731 ACGATACCAAATAAAGGCAAATGTT 58.069 32.000 0.00 0.00 0.00 2.71
8561 10511 8.057536 ACGATACCAAATAAAGGCAAATGTTA 57.942 30.769 0.00 0.00 0.00 2.41
8562 10512 8.691797 ACGATACCAAATAAAGGCAAATGTTAT 58.308 29.630 0.00 0.00 0.00 1.89
8563 10513 8.967218 CGATACCAAATAAAGGCAAATGTTATG 58.033 33.333 0.00 0.00 0.00 1.90
8564 10514 9.260002 GATACCAAATAAAGGCAAATGTTATGG 57.740 33.333 0.00 0.00 0.00 2.74
8565 10515 7.251321 ACCAAATAAAGGCAAATGTTATGGA 57.749 32.000 0.00 0.00 0.00 3.41
8566 10516 7.102993 ACCAAATAAAGGCAAATGTTATGGAC 58.897 34.615 0.00 0.00 0.00 4.02
8567 10517 6.255453 CCAAATAAAGGCAAATGTTATGGACG 59.745 38.462 0.00 0.00 0.00 4.79
8568 10518 6.767524 AATAAAGGCAAATGTTATGGACGA 57.232 33.333 0.00 0.00 0.00 4.20
8569 10519 6.959639 ATAAAGGCAAATGTTATGGACGAT 57.040 33.333 0.00 0.00 0.00 3.73
8570 10520 8.458573 AATAAAGGCAAATGTTATGGACGATA 57.541 30.769 0.00 0.00 0.00 2.92
8571 10521 5.751243 AAGGCAAATGTTATGGACGATAC 57.249 39.130 0.00 0.00 0.00 2.24
8572 10522 4.134563 AGGCAAATGTTATGGACGATACC 58.865 43.478 0.00 0.00 0.00 2.73
8573 10523 3.880490 GGCAAATGTTATGGACGATACCA 59.120 43.478 0.00 0.00 44.41 3.25
8574 10524 4.336993 GGCAAATGTTATGGACGATACCAA 59.663 41.667 0.00 0.00 43.47 3.67
8575 10525 5.163602 GGCAAATGTTATGGACGATACCAAA 60.164 40.000 0.00 0.00 43.47 3.28
8576 10526 6.460953 GGCAAATGTTATGGACGATACCAAAT 60.461 38.462 0.00 0.00 43.47 2.32
8577 10527 7.255312 GGCAAATGTTATGGACGATACCAAATA 60.255 37.037 0.00 0.00 43.47 1.40
8578 10528 8.132362 GCAAATGTTATGGACGATACCAAATAA 58.868 33.333 0.00 0.00 43.47 1.40
8581 10531 7.795482 TGTTATGGACGATACCAAATAAAGG 57.205 36.000 0.00 0.00 43.47 3.11
8582 10532 6.261381 TGTTATGGACGATACCAAATAAAGGC 59.739 38.462 0.00 0.00 43.47 4.35
8583 10533 4.223556 TGGACGATACCAAATAAAGGCA 57.776 40.909 0.00 0.00 36.96 4.75
8584 10534 4.590918 TGGACGATACCAAATAAAGGCAA 58.409 39.130 0.00 0.00 36.96 4.52
8585 10535 5.010933 TGGACGATACCAAATAAAGGCAAA 58.989 37.500 0.00 0.00 36.96 3.68
8586 10536 5.654650 TGGACGATACCAAATAAAGGCAAAT 59.345 36.000 0.00 0.00 36.96 2.32
8587 10537 5.977129 GGACGATACCAAATAAAGGCAAATG 59.023 40.000 0.00 0.00 0.00 2.32
8588 10538 6.405397 GGACGATACCAAATAAAGGCAAATGT 60.405 38.462 0.00 0.00 0.00 2.71
8589 10539 6.930731 ACGATACCAAATAAAGGCAAATGTT 58.069 32.000 0.00 0.00 0.00 2.71
8590 10540 8.057536 ACGATACCAAATAAAGGCAAATGTTA 57.942 30.769 0.00 0.00 0.00 2.41
8591 10541 8.691797 ACGATACCAAATAAAGGCAAATGTTAT 58.308 29.630 0.00 0.00 0.00 1.89
8592 10542 8.967218 CGATACCAAATAAAGGCAAATGTTATG 58.033 33.333 0.00 0.00 0.00 1.90
8593 10543 9.260002 GATACCAAATAAAGGCAAATGTTATGG 57.740 33.333 0.00 0.00 0.00 2.74
8594 10544 7.251321 ACCAAATAAAGGCAAATGTTATGGA 57.749 32.000 0.00 0.00 0.00 3.41
8595 10545 7.102993 ACCAAATAAAGGCAAATGTTATGGAC 58.897 34.615 0.00 0.00 0.00 4.02
8596 10546 6.255453 CCAAATAAAGGCAAATGTTATGGACG 59.745 38.462 0.00 0.00 0.00 4.79
8597 10547 6.767524 AATAAAGGCAAATGTTATGGACGA 57.232 33.333 0.00 0.00 0.00 4.20
8598 10548 6.959639 ATAAAGGCAAATGTTATGGACGAT 57.040 33.333 0.00 0.00 0.00 3.73
8626 10576 7.148507 GCATTACTGGAGAATCATAGGAATTCG 60.149 40.741 0.00 0.00 33.71 3.34
8638 10588 5.756347 TCATAGGAATTCGACCGGTTTATTG 59.244 40.000 9.42 0.00 0.00 1.90
8639 10589 4.210724 AGGAATTCGACCGGTTTATTGA 57.789 40.909 9.42 0.00 0.00 2.57
8640 10590 4.777463 AGGAATTCGACCGGTTTATTGAT 58.223 39.130 9.42 0.00 0.00 2.57
8641 10591 4.574828 AGGAATTCGACCGGTTTATTGATG 59.425 41.667 9.42 0.00 0.00 3.07
8749 10702 4.339872 AGAATGCCATGTTTGCTTCAAA 57.660 36.364 0.00 0.00 0.00 2.69
8880 10835 0.326595 AGACCCAACACACACACACA 59.673 50.000 0.00 0.00 0.00 3.72
8882 10837 0.250945 ACCCAACACACACACACACA 60.251 50.000 0.00 0.00 0.00 3.72
8885 10840 0.792729 CAACACACACACACACACGC 60.793 55.000 0.00 0.00 0.00 5.34
8886 10841 2.021243 CACACACACACACACGCG 59.979 61.111 3.53 3.53 0.00 6.01
8887 10842 3.860125 ACACACACACACACGCGC 61.860 61.111 5.73 0.00 0.00 6.86
8888 10843 4.918060 CACACACACACACGCGCG 62.918 66.667 30.96 30.96 0.00 6.86
8890 10845 4.627114 CACACACACACGCGCGTC 62.627 66.667 35.61 0.00 0.00 5.19
8912 10867 2.076863 CAGTTTTTGCTACTCCCTCCG 58.923 52.381 0.00 0.00 0.00 4.63
8913 10868 1.697982 AGTTTTTGCTACTCCCTCCGT 59.302 47.619 0.00 0.00 0.00 4.69
8914 10869 2.105993 AGTTTTTGCTACTCCCTCCGTT 59.894 45.455 0.00 0.00 0.00 4.44
8915 10870 2.467566 TTTTGCTACTCCCTCCGTTC 57.532 50.000 0.00 0.00 0.00 3.95
8916 10871 0.611714 TTTGCTACTCCCTCCGTTCC 59.388 55.000 0.00 0.00 0.00 3.62
8917 10872 1.601419 TTGCTACTCCCTCCGTTCCG 61.601 60.000 0.00 0.00 0.00 4.30
8918 10873 1.751927 GCTACTCCCTCCGTTCCGA 60.752 63.158 0.00 0.00 0.00 4.55
8919 10874 1.318158 GCTACTCCCTCCGTTCCGAA 61.318 60.000 0.00 0.00 0.00 4.30
8920 10875 1.400737 CTACTCCCTCCGTTCCGAAT 58.599 55.000 0.00 0.00 0.00 3.34
8921 10876 1.755380 CTACTCCCTCCGTTCCGAATT 59.245 52.381 0.00 0.00 0.00 2.17
8922 10877 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
8923 10878 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
8924 10879 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
8925 10880 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
8926 10881 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
8927 10882 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
8928 10883 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
8929 10884 3.581755 CTCCGTTCCGAATTACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
8930 10885 3.319755 TCCGTTCCGAATTACTTGTCAC 58.680 45.455 0.00 0.00 0.00 3.67
8931 10886 3.061322 CCGTTCCGAATTACTTGTCACA 58.939 45.455 0.00 0.00 0.00 3.58
8932 10887 3.122948 CCGTTCCGAATTACTTGTCACAG 59.877 47.826 0.00 0.00 0.00 3.66
8933 10888 3.985279 CGTTCCGAATTACTTGTCACAGA 59.015 43.478 0.00 0.00 0.00 3.41
8934 10889 4.446385 CGTTCCGAATTACTTGTCACAGAA 59.554 41.667 0.00 0.00 0.00 3.02
8935 10890 5.050634 CGTTCCGAATTACTTGTCACAGAAA 60.051 40.000 0.00 0.00 0.00 2.52
8936 10891 6.347402 CGTTCCGAATTACTTGTCACAGAAAT 60.347 38.462 0.00 0.00 0.00 2.17
8937 10892 6.480524 TCCGAATTACTTGTCACAGAAATG 57.519 37.500 0.00 0.00 0.00 2.32
8938 10893 5.411361 TCCGAATTACTTGTCACAGAAATGG 59.589 40.000 0.00 0.00 0.00 3.16
8939 10894 5.411361 CCGAATTACTTGTCACAGAAATGGA 59.589 40.000 0.00 0.00 0.00 3.41
8940 10895 6.094048 CCGAATTACTTGTCACAGAAATGGAT 59.906 38.462 0.00 0.00 0.00 3.41
8941 10896 6.963242 CGAATTACTTGTCACAGAAATGGATG 59.037 38.462 0.00 0.00 0.00 3.51
8942 10897 7.361201 CGAATTACTTGTCACAGAAATGGATGT 60.361 37.037 0.00 0.00 0.00 3.06
8943 10898 8.862325 AATTACTTGTCACAGAAATGGATGTA 57.138 30.769 0.00 0.00 0.00 2.29
8944 10899 9.466497 AATTACTTGTCACAGAAATGGATGTAT 57.534 29.630 0.00 0.00 0.00 2.29
8945 10900 6.992063 ACTTGTCACAGAAATGGATGTATC 57.008 37.500 0.00 0.00 0.00 2.24
8946 10901 6.715280 ACTTGTCACAGAAATGGATGTATCT 58.285 36.000 0.00 0.00 0.00 1.98
8947 10902 7.851228 ACTTGTCACAGAAATGGATGTATCTA 58.149 34.615 0.00 0.00 0.00 1.98
8948 10903 7.984050 ACTTGTCACAGAAATGGATGTATCTAG 59.016 37.037 0.00 0.00 0.00 2.43
8949 10904 7.660030 TGTCACAGAAATGGATGTATCTAGA 57.340 36.000 0.00 0.00 0.00 2.43
8950 10905 8.255111 TGTCACAGAAATGGATGTATCTAGAT 57.745 34.615 10.73 10.73 0.00 1.98
8951 10906 8.146412 TGTCACAGAAATGGATGTATCTAGATG 58.854 37.037 15.79 0.00 0.00 2.90
8952 10907 8.147058 GTCACAGAAATGGATGTATCTAGATGT 58.853 37.037 15.79 1.25 0.00 3.06
8953 10908 9.367160 TCACAGAAATGGATGTATCTAGATGTA 57.633 33.333 15.79 4.44 0.00 2.29
8982 10937 7.251704 AGTTCTAGATACATCCATTTTTGCG 57.748 36.000 0.00 0.00 0.00 4.85
8983 10938 7.047891 AGTTCTAGATACATCCATTTTTGCGA 58.952 34.615 0.00 0.00 0.00 5.10
8984 10939 6.844696 TCTAGATACATCCATTTTTGCGAC 57.155 37.500 0.00 0.00 0.00 5.19
8985 10940 4.536364 AGATACATCCATTTTTGCGACG 57.464 40.909 0.00 0.00 0.00 5.12
8986 10941 4.188462 AGATACATCCATTTTTGCGACGA 58.812 39.130 0.00 0.00 0.00 4.20
8987 10942 2.900122 ACATCCATTTTTGCGACGAG 57.100 45.000 0.00 0.00 0.00 4.18
8988 10943 2.151202 ACATCCATTTTTGCGACGAGT 58.849 42.857 0.00 0.00 0.00 4.18
8989 10944 3.331150 ACATCCATTTTTGCGACGAGTA 58.669 40.909 0.00 0.00 0.00 2.59
8990 10945 3.749088 ACATCCATTTTTGCGACGAGTAA 59.251 39.130 0.00 0.00 0.00 2.24
8991 10946 4.394920 ACATCCATTTTTGCGACGAGTAAT 59.605 37.500 0.00 0.00 0.00 1.89
8992 10947 5.106317 ACATCCATTTTTGCGACGAGTAATT 60.106 36.000 0.00 0.00 0.00 1.40
8993 10948 5.365403 TCCATTTTTGCGACGAGTAATTT 57.635 34.783 0.00 0.00 0.00 1.82
8994 10949 5.150683 TCCATTTTTGCGACGAGTAATTTG 58.849 37.500 0.00 0.00 0.00 2.32
8995 10950 4.323336 CCATTTTTGCGACGAGTAATTTGG 59.677 41.667 0.00 0.00 0.00 3.28
8996 10951 4.815040 TTTTTGCGACGAGTAATTTGGA 57.185 36.364 0.00 0.00 0.00 3.53
8997 10952 4.815040 TTTTGCGACGAGTAATTTGGAA 57.185 36.364 0.00 0.00 0.00 3.53
8998 10953 3.799137 TTGCGACGAGTAATTTGGAAC 57.201 42.857 0.00 0.00 0.00 3.62
8999 10954 1.722464 TGCGACGAGTAATTTGGAACG 59.278 47.619 0.00 0.00 0.00 3.95
9000 10955 1.060122 GCGACGAGTAATTTGGAACGG 59.940 52.381 0.00 0.00 0.00 4.44
9001 10956 2.598589 CGACGAGTAATTTGGAACGGA 58.401 47.619 0.00 0.00 0.00 4.69
9002 10957 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
9003 10958 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
9004 10959 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
9005 10960 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
9006 10961 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
9082 11040 2.473984 GACGATGTTCTTTCCGAAACGT 59.526 45.455 5.05 5.05 39.19 3.99
9273 11237 5.163713 CCAAGAGCTTCTTTAACACATAGGC 60.164 44.000 0.00 0.00 33.78 3.93
9302 11266 3.763360 CCCAATTTGCCTCATGTTGAGTA 59.237 43.478 4.00 0.00 42.80 2.59
9339 11309 1.270550 CCTGGAAAGAACCACACATGC 59.729 52.381 0.00 0.00 35.91 4.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 3.390639 CAGATCTTCTCCCATTGCTAGGT 59.609 47.826 0.00 0.00 0.00 3.08
69 70 4.279420 GCTTCCACTTCATTCCAGAAAAGT 59.721 41.667 0.00 0.00 32.34 2.66
71 72 4.214310 TGCTTCCACTTCATTCCAGAAAA 58.786 39.130 0.00 0.00 0.00 2.29
129 130 9.256228 TCACATATAATATCCCTAGACCAAGTC 57.744 37.037 0.00 0.00 0.00 3.01
165 166 0.107214 TAGCCCTTTCATCCTTGGCG 60.107 55.000 0.00 0.00 46.67 5.69
168 169 9.750125 GTAATAATTTTAGCCCTTTCATCCTTG 57.250 33.333 0.00 0.00 0.00 3.61
169 170 9.487442 TGTAATAATTTTAGCCCTTTCATCCTT 57.513 29.630 0.00 0.00 0.00 3.36
237 239 4.484537 AGGATCAAGTGTCTCCTGATTG 57.515 45.455 0.00 0.00 38.00 2.67
406 408 3.726144 GCCAGCTCCTCCCTTGCT 61.726 66.667 0.00 0.00 37.56 3.91
573 582 3.450457 TCACAAATTCACCAAAGCCAAGT 59.550 39.130 0.00 0.00 0.00 3.16
595 604 5.821470 AGATCATTCTGCATGACGAGAATTT 59.179 36.000 10.68 4.45 45.12 1.82
686 695 9.483916 CGACATATTGGTTGTCCTTAATACATA 57.516 33.333 0.00 0.00 40.29 2.29
743 753 6.816136 TCAGACAACTGTGAGTAATCAGAAA 58.184 36.000 0.00 0.00 43.81 2.52
745 755 6.040955 AGTTCAGACAACTGTGAGTAATCAGA 59.959 38.462 0.00 0.00 43.81 3.27
749 759 5.223382 CGAGTTCAGACAACTGTGAGTAAT 58.777 41.667 0.00 0.00 43.81 1.89
755 765 0.861837 GGCGAGTTCAGACAACTGTG 59.138 55.000 0.00 0.00 43.81 3.66
775 785 1.002087 CTGCTAACCAAGAACGAGGGT 59.998 52.381 0.00 0.00 36.19 4.34
807 817 2.145536 CAAAAACATTCTTGGGGCAGC 58.854 47.619 0.00 0.00 0.00 5.25
877 887 3.980646 ACTGAACACTATGCGCAAAAA 57.019 38.095 17.11 1.52 0.00 1.94
878 888 3.980646 AACTGAACACTATGCGCAAAA 57.019 38.095 17.11 4.61 0.00 2.44
879 889 3.980646 AAACTGAACACTATGCGCAAA 57.019 38.095 17.11 0.00 0.00 3.68
880 890 5.621197 AATAAACTGAACACTATGCGCAA 57.379 34.783 17.11 2.72 0.00 4.85
881 891 5.621197 AAATAAACTGAACACTATGCGCA 57.379 34.783 14.96 14.96 0.00 6.09
882 892 5.511729 GGAAAATAAACTGAACACTATGCGC 59.488 40.000 0.00 0.00 0.00 6.09
883 893 6.607689 TGGAAAATAAACTGAACACTATGCG 58.392 36.000 0.00 0.00 0.00 4.73
884 894 8.082242 AGTTGGAAAATAAACTGAACACTATGC 58.918 33.333 0.00 0.00 35.34 3.14
885 895 9.965824 AAGTTGGAAAATAAACTGAACACTATG 57.034 29.630 0.00 0.00 36.75 2.23
887 897 8.339714 CGAAGTTGGAAAATAAACTGAACACTA 58.660 33.333 0.00 0.00 36.75 2.74
888 898 7.066525 TCGAAGTTGGAAAATAAACTGAACACT 59.933 33.333 0.00 0.00 36.75 3.55
912 922 3.814615 CTGCGGGGTGGATCCATCG 62.815 68.421 19.62 21.44 38.11 3.84
922 932 1.898154 GTCACACTATCTGCGGGGT 59.102 57.895 0.00 0.00 0.00 4.95
1108 1119 0.743701 GAGTCAGCCGTACCTCTCGA 60.744 60.000 0.00 0.00 0.00 4.04
1182 1197 2.887783 TGCATTTACACCACGAAACCAT 59.112 40.909 0.00 0.00 0.00 3.55
1183 1198 2.298610 TGCATTTACACCACGAAACCA 58.701 42.857 0.00 0.00 0.00 3.67
1202 1217 2.565841 GAGGCACCCAAGCTAGTATTG 58.434 52.381 0.00 0.00 34.17 1.90
1231 1249 0.606604 AAGCACCGAATCTACCGTGT 59.393 50.000 0.00 0.00 0.00 4.49
1246 1264 0.961019 GCAACCAGACCAATCAAGCA 59.039 50.000 0.00 0.00 0.00 3.91
1335 1356 5.484998 ACCCTCATTTCATTTGCCATACTTT 59.515 36.000 0.00 0.00 0.00 2.66
1374 1395 4.188247 TGACAAGCCATCTACAGTACAC 57.812 45.455 0.00 0.00 0.00 2.90
1375 1396 4.882842 TTGACAAGCCATCTACAGTACA 57.117 40.909 0.00 0.00 0.00 2.90
1376 1397 4.572389 CCATTGACAAGCCATCTACAGTAC 59.428 45.833 0.00 0.00 0.00 2.73
1377 1398 4.469586 TCCATTGACAAGCCATCTACAGTA 59.530 41.667 0.00 0.00 0.00 2.74
1378 1399 3.264193 TCCATTGACAAGCCATCTACAGT 59.736 43.478 0.00 0.00 0.00 3.55
1379 1400 3.877559 TCCATTGACAAGCCATCTACAG 58.122 45.455 0.00 0.00 0.00 2.74
1387 1408 5.904362 AGAGTAAAATCCATTGACAAGCC 57.096 39.130 0.00 0.00 0.00 4.35
1392 1413 9.668497 AACTAGGTTAGAGTAAAATCCATTGAC 57.332 33.333 0.00 0.00 0.00 3.18
1425 1447 4.695455 CCTGGAAAGTTTCAAGCGAAGATA 59.305 41.667 17.16 0.00 31.28 1.98
1430 1452 2.341846 ACCTGGAAAGTTTCAAGCGA 57.658 45.000 17.16 0.00 28.84 4.93
1432 1454 2.866156 GCAAACCTGGAAAGTTTCAAGC 59.134 45.455 17.16 1.97 35.28 4.01
1440 1462 4.463891 ACATGGAATAGCAAACCTGGAAAG 59.536 41.667 0.00 0.00 0.00 2.62
1454 1476 6.767902 GGACTTGAGCTATTTCACATGGAATA 59.232 38.462 0.00 0.00 34.91 1.75
1462 1484 4.837972 AGGAAGGACTTGAGCTATTTCAC 58.162 43.478 0.00 0.00 0.00 3.18
1489 1511 0.249657 GCAGGCGACCTCTAATCCTG 60.250 60.000 2.43 2.43 45.26 3.86
1743 1765 1.212375 TTTGCAGGGGAGCTAGCATA 58.788 50.000 18.83 0.00 36.80 3.14
1754 1776 3.738791 GGTACGACAAAATTTTTGCAGGG 59.261 43.478 19.29 10.00 0.00 4.45
1757 1779 5.637810 TGTTTGGTACGACAAAATTTTTGCA 59.362 32.000 19.29 7.44 41.53 4.08
1764 1786 5.048991 GGAGATGTGTTTGGTACGACAAAAT 60.049 40.000 0.00 0.00 41.53 1.82
1978 2002 4.666512 AGCCCAGAATACACAAGTCAATT 58.333 39.130 0.00 0.00 0.00 2.32
1992 2016 3.589735 TGGAGTTGGTTTATAGCCCAGAA 59.410 43.478 0.00 0.00 31.04 3.02
2413 2439 4.824537 TGTAGATGCTCTAAGACTGGCTAG 59.175 45.833 0.00 0.00 29.58 3.42
2456 2482 0.468585 ACCGCGGATGTATAGGGACA 60.469 55.000 35.90 0.00 0.00 4.02
2511 2537 3.072768 TGCAAATGGGAAAATTTGAGGCT 59.927 39.130 12.55 0.00 46.13 4.58
2556 2584 6.618287 GCATGTCTTTGCATGTATTAGGTA 57.382 37.500 7.71 0.00 45.75 3.08
2617 2645 0.950071 GCGTTTACACAACCCCGCTA 60.950 55.000 0.00 0.00 38.22 4.26
2829 2865 1.621107 CATCAATGTTCGCCTTGTGC 58.379 50.000 0.00 0.00 0.00 4.57
2923 2965 5.080068 CCGACTAGCTTTTTCGTGATTTTC 58.920 41.667 0.00 0.00 0.00 2.29
3261 3346 2.087646 GGCTGATGAGGGACAAAGAAC 58.912 52.381 0.00 0.00 0.00 3.01
3263 3348 1.661463 AGGCTGATGAGGGACAAAGA 58.339 50.000 0.00 0.00 0.00 2.52
3568 3656 9.236691 CTAATGTGAACAAATAATATGTGGTGC 57.763 33.333 0.00 0.00 0.00 5.01
3809 3899 9.099820 GCGTTATAGAGTTGAAAAGTTTTACAC 57.900 33.333 0.00 1.32 0.00 2.90
4461 4558 3.526931 ACATCAGGTACGTGATCAAGG 57.473 47.619 24.44 16.83 34.81 3.61
4467 4564 6.932400 AGTTTTGAATAACATCAGGTACGTGA 59.068 34.615 19.68 19.68 0.00 4.35
4865 4962 3.563508 CACGATATAGAGAGCAGCACTG 58.436 50.000 0.00 0.00 0.00 3.66
4977 5074 7.003482 TGCAGGAATATCAACATAATTAGGCA 58.997 34.615 0.00 0.00 0.00 4.75
5093 5190 3.055891 CAGGCCCTTTTATCCCACTTTTG 60.056 47.826 0.00 0.00 0.00 2.44
5137 5402 9.882996 ATGTTTAATACGCTCATCATGTATTTG 57.117 29.630 2.60 0.00 39.04 2.32
5177 5444 8.008332 TGGATATTGTACTAAGTAGGATCCACA 58.992 37.037 15.82 3.68 36.32 4.17
5212 5479 4.093408 GCTCGAAATCAGTGTCTAATTGCA 59.907 41.667 0.00 0.00 0.00 4.08
5219 5486 2.625737 CATGGCTCGAAATCAGTGTCT 58.374 47.619 0.00 0.00 0.00 3.41
5769 7610 2.173519 CTTGTCAACCAGCCCATCAAT 58.826 47.619 0.00 0.00 0.00 2.57
5907 7749 6.584563 GTCGAATAGAGATATTTCTGGCAGAC 59.415 42.308 18.55 5.23 30.30 3.51
6289 8136 5.105554 TCCTTTTGAAAACTTTAGCAGCACA 60.106 36.000 0.00 0.00 0.00 4.57
6333 8181 5.867716 ACAGTATCATTCCACAAACGTCTAC 59.132 40.000 0.00 0.00 0.00 2.59
6530 8421 6.792326 TGCAGATCTTAGCATTTGAATTCAG 58.208 36.000 8.41 0.00 35.51 3.02
6749 8654 4.780021 ACTCTCACTTATTCCACTGGTCAT 59.220 41.667 0.00 0.00 0.00 3.06
7231 9157 3.247442 CATTTATGTGTGTGCAAGCCTG 58.753 45.455 0.00 0.00 0.00 4.85
7232 9158 2.231964 CCATTTATGTGTGTGCAAGCCT 59.768 45.455 0.00 0.00 0.00 4.58
7233 9159 2.230992 TCCATTTATGTGTGTGCAAGCC 59.769 45.455 0.00 0.00 0.00 4.35
7234 9160 3.244976 GTCCATTTATGTGTGTGCAAGC 58.755 45.455 0.00 0.00 0.00 4.01
7235 9161 4.502171 TGTCCATTTATGTGTGTGCAAG 57.498 40.909 0.00 0.00 0.00 4.01
7236 9162 6.772360 ATATGTCCATTTATGTGTGTGCAA 57.228 33.333 0.00 0.00 0.00 4.08
7335 9272 4.060900 CTGCTGTCAGGCGTATATTTCAT 58.939 43.478 1.14 0.00 36.68 2.57
7622 9559 4.863491 AGAAGTAACTTTGTGCATTGCAG 58.137 39.130 12.53 2.62 40.08 4.41
7651 9588 9.448438 AACTACTAGCAACAAATACATGATTGA 57.552 29.630 0.00 0.00 0.00 2.57
7678 9615 7.828712 ACTACAGGAGTTAACAGACAAGATAC 58.171 38.462 8.61 0.00 33.13 2.24
7723 9660 7.149063 GCGCTTCTGAATCTAAAAGTTCTTTTG 60.149 37.037 17.39 9.62 0.00 2.44
8203 10152 0.933097 GCACATGACACGCCTATCTG 59.067 55.000 0.00 0.00 0.00 2.90
8251 10200 4.023792 CACGGTTAATGATGATGGTGATGG 60.024 45.833 0.00 0.00 0.00 3.51
8377 10326 1.593196 CGACATCACCAACAACCTGT 58.407 50.000 0.00 0.00 0.00 4.00
8541 10491 7.102993 GTCCATAACATTTGCCTTTATTTGGT 58.897 34.615 0.00 0.00 0.00 3.67
8542 10492 6.255453 CGTCCATAACATTTGCCTTTATTTGG 59.745 38.462 0.00 0.00 0.00 3.28
8543 10493 7.032580 TCGTCCATAACATTTGCCTTTATTTG 58.967 34.615 0.00 0.00 0.00 2.32
8544 10494 7.164230 TCGTCCATAACATTTGCCTTTATTT 57.836 32.000 0.00 0.00 0.00 1.40
8545 10495 6.767524 TCGTCCATAACATTTGCCTTTATT 57.232 33.333 0.00 0.00 0.00 1.40
8546 10496 6.959639 ATCGTCCATAACATTTGCCTTTAT 57.040 33.333 0.00 0.00 0.00 1.40
8547 10497 6.261381 GGTATCGTCCATAACATTTGCCTTTA 59.739 38.462 0.00 0.00 0.00 1.85
8548 10498 5.067283 GGTATCGTCCATAACATTTGCCTTT 59.933 40.000 0.00 0.00 0.00 3.11
8549 10499 4.578928 GGTATCGTCCATAACATTTGCCTT 59.421 41.667 0.00 0.00 0.00 4.35
8550 10500 4.134563 GGTATCGTCCATAACATTTGCCT 58.865 43.478 0.00 0.00 0.00 4.75
8551 10501 3.880490 TGGTATCGTCCATAACATTTGCC 59.120 43.478 0.00 0.00 28.81 4.52
8552 10502 5.493133 TTGGTATCGTCCATAACATTTGC 57.507 39.130 0.00 0.00 34.43 3.68
8555 10505 8.846211 CCTTTATTTGGTATCGTCCATAACATT 58.154 33.333 0.00 0.00 34.43 2.71
8556 10506 7.040686 GCCTTTATTTGGTATCGTCCATAACAT 60.041 37.037 0.00 0.00 34.43 2.71
8557 10507 6.261381 GCCTTTATTTGGTATCGTCCATAACA 59.739 38.462 0.00 0.00 37.33 2.41
8558 10508 6.261381 TGCCTTTATTTGGTATCGTCCATAAC 59.739 38.462 0.00 0.00 37.33 1.89
8559 10509 6.358178 TGCCTTTATTTGGTATCGTCCATAA 58.642 36.000 0.00 0.00 37.33 1.90
8560 10510 5.931294 TGCCTTTATTTGGTATCGTCCATA 58.069 37.500 0.00 0.00 37.33 2.74
8561 10511 4.787551 TGCCTTTATTTGGTATCGTCCAT 58.212 39.130 0.00 0.00 37.33 3.41
8562 10512 4.223556 TGCCTTTATTTGGTATCGTCCA 57.776 40.909 0.00 0.00 35.49 4.02
8563 10513 5.570234 TTTGCCTTTATTTGGTATCGTCC 57.430 39.130 0.00 0.00 0.00 4.79
8564 10514 6.560711 ACATTTGCCTTTATTTGGTATCGTC 58.439 36.000 0.00 0.00 0.00 4.20
8565 10515 6.524101 ACATTTGCCTTTATTTGGTATCGT 57.476 33.333 0.00 0.00 0.00 3.73
8566 10516 8.967218 CATAACATTTGCCTTTATTTGGTATCG 58.033 33.333 0.00 0.00 0.00 2.92
8567 10517 9.260002 CCATAACATTTGCCTTTATTTGGTATC 57.740 33.333 0.00 0.00 0.00 2.24
8568 10518 8.986991 TCCATAACATTTGCCTTTATTTGGTAT 58.013 29.630 0.00 0.00 0.00 2.73
8569 10519 8.254508 GTCCATAACATTTGCCTTTATTTGGTA 58.745 33.333 0.00 0.00 0.00 3.25
8570 10520 7.102993 GTCCATAACATTTGCCTTTATTTGGT 58.897 34.615 0.00 0.00 0.00 3.67
8571 10521 6.255453 CGTCCATAACATTTGCCTTTATTTGG 59.745 38.462 0.00 0.00 0.00 3.28
8572 10522 7.032580 TCGTCCATAACATTTGCCTTTATTTG 58.967 34.615 0.00 0.00 0.00 2.32
8573 10523 7.164230 TCGTCCATAACATTTGCCTTTATTT 57.836 32.000 0.00 0.00 0.00 1.40
8574 10524 6.767524 TCGTCCATAACATTTGCCTTTATT 57.232 33.333 0.00 0.00 0.00 1.40
8575 10525 6.959639 ATCGTCCATAACATTTGCCTTTAT 57.040 33.333 0.00 0.00 0.00 1.40
8576 10526 6.559810 CAATCGTCCATAACATTTGCCTTTA 58.440 36.000 0.00 0.00 0.00 1.85
8577 10527 5.410067 CAATCGTCCATAACATTTGCCTTT 58.590 37.500 0.00 0.00 0.00 3.11
8578 10528 4.677779 GCAATCGTCCATAACATTTGCCTT 60.678 41.667 0.00 0.00 38.51 4.35
8579 10529 3.181487 GCAATCGTCCATAACATTTGCCT 60.181 43.478 0.00 0.00 38.51 4.75
8580 10530 3.115554 GCAATCGTCCATAACATTTGCC 58.884 45.455 0.00 0.00 38.51 4.52
8581 10531 3.768406 TGCAATCGTCCATAACATTTGC 58.232 40.909 0.00 0.00 41.93 3.68
8582 10532 7.166307 CAGTAATGCAATCGTCCATAACATTTG 59.834 37.037 0.00 0.00 0.00 2.32
8583 10533 7.195646 CAGTAATGCAATCGTCCATAACATTT 58.804 34.615 0.00 0.00 0.00 2.32
8584 10534 6.238731 CCAGTAATGCAATCGTCCATAACATT 60.239 38.462 0.00 0.00 0.00 2.71
8585 10535 5.239306 CCAGTAATGCAATCGTCCATAACAT 59.761 40.000 0.00 0.00 0.00 2.71
8586 10536 4.574421 CCAGTAATGCAATCGTCCATAACA 59.426 41.667 0.00 0.00 0.00 2.41
8587 10537 4.814234 TCCAGTAATGCAATCGTCCATAAC 59.186 41.667 0.00 0.00 0.00 1.89
8588 10538 5.029807 TCCAGTAATGCAATCGTCCATAA 57.970 39.130 0.00 0.00 0.00 1.90
8589 10539 4.343814 TCTCCAGTAATGCAATCGTCCATA 59.656 41.667 0.00 0.00 0.00 2.74
8590 10540 3.134623 TCTCCAGTAATGCAATCGTCCAT 59.865 43.478 0.00 0.00 0.00 3.41
8591 10541 2.499693 TCTCCAGTAATGCAATCGTCCA 59.500 45.455 0.00 0.00 0.00 4.02
8592 10542 3.179443 TCTCCAGTAATGCAATCGTCC 57.821 47.619 0.00 0.00 0.00 4.79
8593 10543 4.811024 TGATTCTCCAGTAATGCAATCGTC 59.189 41.667 0.00 0.00 0.00 4.20
8594 10544 4.769688 TGATTCTCCAGTAATGCAATCGT 58.230 39.130 0.00 0.00 0.00 3.73
8595 10545 5.936686 ATGATTCTCCAGTAATGCAATCG 57.063 39.130 0.00 0.00 0.00 3.34
8596 10546 7.164122 TCCTATGATTCTCCAGTAATGCAATC 58.836 38.462 0.00 0.00 0.00 2.67
8597 10547 7.083062 TCCTATGATTCTCCAGTAATGCAAT 57.917 36.000 0.00 0.00 0.00 3.56
8598 10548 6.499106 TCCTATGATTCTCCAGTAATGCAA 57.501 37.500 0.00 0.00 0.00 4.08
8626 10576 5.554822 TGCTTTACATCAATAAACCGGTC 57.445 39.130 8.04 0.00 0.00 4.79
8638 10588 6.073058 TCAGACAGACAACAATGCTTTACATC 60.073 38.462 0.00 0.00 38.34 3.06
8639 10589 5.764686 TCAGACAGACAACAATGCTTTACAT 59.235 36.000 0.00 0.00 42.30 2.29
8640 10590 5.122519 TCAGACAGACAACAATGCTTTACA 58.877 37.500 0.00 0.00 0.00 2.41
8641 10591 5.673337 TCAGACAGACAACAATGCTTTAC 57.327 39.130 0.00 0.00 0.00 2.01
8749 10702 1.140312 TTTCAGGTTCTCAGTGGCCT 58.860 50.000 3.32 0.00 0.00 5.19
8892 10847 2.076863 CGGAGGGAGTAGCAAAAACTG 58.923 52.381 0.00 0.00 0.00 3.16
8893 10848 1.697982 ACGGAGGGAGTAGCAAAAACT 59.302 47.619 0.00 0.00 0.00 2.66
8894 10849 2.180432 ACGGAGGGAGTAGCAAAAAC 57.820 50.000 0.00 0.00 0.00 2.43
8895 10850 2.551504 GGAACGGAGGGAGTAGCAAAAA 60.552 50.000 0.00 0.00 0.00 1.94
8896 10851 1.002773 GGAACGGAGGGAGTAGCAAAA 59.997 52.381 0.00 0.00 0.00 2.44
8897 10852 0.611714 GGAACGGAGGGAGTAGCAAA 59.388 55.000 0.00 0.00 0.00 3.68
8898 10853 2.283824 GGAACGGAGGGAGTAGCAA 58.716 57.895 0.00 0.00 0.00 3.91
8899 10854 4.029472 GGAACGGAGGGAGTAGCA 57.971 61.111 0.00 0.00 0.00 3.49
8912 10867 5.917541 TTCTGTGACAAGTAATTCGGAAC 57.082 39.130 0.00 0.00 0.00 3.62
8913 10868 6.072728 CCATTTCTGTGACAAGTAATTCGGAA 60.073 38.462 0.00 0.00 0.00 4.30
8914 10869 5.411361 CCATTTCTGTGACAAGTAATTCGGA 59.589 40.000 0.00 0.00 0.00 4.55
8915 10870 5.411361 TCCATTTCTGTGACAAGTAATTCGG 59.589 40.000 0.00 0.00 0.00 4.30
8916 10871 6.480524 TCCATTTCTGTGACAAGTAATTCG 57.519 37.500 0.00 0.00 0.00 3.34
8917 10872 7.820648 ACATCCATTTCTGTGACAAGTAATTC 58.179 34.615 0.00 0.00 0.00 2.17
8918 10873 7.765695 ACATCCATTTCTGTGACAAGTAATT 57.234 32.000 0.00 0.00 0.00 1.40
8919 10874 9.113838 GATACATCCATTTCTGTGACAAGTAAT 57.886 33.333 0.00 0.00 0.00 1.89
8920 10875 8.321353 AGATACATCCATTTCTGTGACAAGTAA 58.679 33.333 0.00 0.00 0.00 2.24
8921 10876 7.851228 AGATACATCCATTTCTGTGACAAGTA 58.149 34.615 0.00 0.00 0.00 2.24
8922 10877 6.715280 AGATACATCCATTTCTGTGACAAGT 58.285 36.000 0.00 0.00 0.00 3.16
8923 10878 8.200120 TCTAGATACATCCATTTCTGTGACAAG 58.800 37.037 0.00 0.00 0.00 3.16
8924 10879 8.078060 TCTAGATACATCCATTTCTGTGACAA 57.922 34.615 0.00 0.00 0.00 3.18
8925 10880 7.660030 TCTAGATACATCCATTTCTGTGACA 57.340 36.000 0.00 0.00 0.00 3.58
8926 10881 8.147058 ACATCTAGATACATCCATTTCTGTGAC 58.853 37.037 4.54 0.00 0.00 3.67
8927 10882 8.255111 ACATCTAGATACATCCATTTCTGTGA 57.745 34.615 4.54 0.00 0.00 3.58
8956 10911 8.826710 CGCAAAAATGGATGTATCTAGAACTAA 58.173 33.333 0.00 0.00 0.00 2.24
8957 10912 8.201464 TCGCAAAAATGGATGTATCTAGAACTA 58.799 33.333 0.00 0.00 0.00 2.24
8958 10913 7.011482 GTCGCAAAAATGGATGTATCTAGAACT 59.989 37.037 0.00 0.00 0.00 3.01
8959 10914 7.126398 GTCGCAAAAATGGATGTATCTAGAAC 58.874 38.462 0.00 0.00 0.00 3.01
8960 10915 6.019075 CGTCGCAAAAATGGATGTATCTAGAA 60.019 38.462 0.00 0.00 0.00 2.10
8961 10916 5.462068 CGTCGCAAAAATGGATGTATCTAGA 59.538 40.000 0.00 0.00 0.00 2.43
8962 10917 5.462068 TCGTCGCAAAAATGGATGTATCTAG 59.538 40.000 0.00 0.00 0.00 2.43
8963 10918 5.353111 TCGTCGCAAAAATGGATGTATCTA 58.647 37.500 0.00 0.00 0.00 1.98
8964 10919 4.188462 TCGTCGCAAAAATGGATGTATCT 58.812 39.130 0.00 0.00 0.00 1.98
8965 10920 4.034048 ACTCGTCGCAAAAATGGATGTATC 59.966 41.667 0.00 0.00 0.00 2.24
8966 10921 3.938963 ACTCGTCGCAAAAATGGATGTAT 59.061 39.130 0.00 0.00 0.00 2.29
8967 10922 3.331150 ACTCGTCGCAAAAATGGATGTA 58.669 40.909 0.00 0.00 0.00 2.29
8968 10923 2.151202 ACTCGTCGCAAAAATGGATGT 58.849 42.857 0.00 0.00 0.00 3.06
8969 10924 2.900122 ACTCGTCGCAAAAATGGATG 57.100 45.000 0.00 0.00 0.00 3.51
8970 10925 5.560966 AATTACTCGTCGCAAAAATGGAT 57.439 34.783 0.00 0.00 0.00 3.41
8971 10926 5.150683 CAAATTACTCGTCGCAAAAATGGA 58.849 37.500 0.00 0.00 0.00 3.41
8972 10927 4.323336 CCAAATTACTCGTCGCAAAAATGG 59.677 41.667 0.00 0.00 0.00 3.16
8973 10928 5.150683 TCCAAATTACTCGTCGCAAAAATG 58.849 37.500 0.00 0.00 0.00 2.32
8974 10929 5.365403 TCCAAATTACTCGTCGCAAAAAT 57.635 34.783 0.00 0.00 0.00 1.82
8975 10930 4.815040 TCCAAATTACTCGTCGCAAAAA 57.185 36.364 0.00 0.00 0.00 1.94
8976 10931 4.529446 GTTCCAAATTACTCGTCGCAAAA 58.471 39.130 0.00 0.00 0.00 2.44
8977 10932 3.363182 CGTTCCAAATTACTCGTCGCAAA 60.363 43.478 0.00 0.00 0.00 3.68
8978 10933 2.156117 CGTTCCAAATTACTCGTCGCAA 59.844 45.455 0.00 0.00 0.00 4.85
8979 10934 1.722464 CGTTCCAAATTACTCGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
8980 10935 1.060122 CCGTTCCAAATTACTCGTCGC 59.940 52.381 0.00 0.00 0.00 5.19
8981 10936 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
8982 10937 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
8983 10938 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
8984 10939 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
8985 10940 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
8986 10941 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
8987 10942 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
8988 10943 4.966805 AGATACTCCCTCCGTTCCAAATTA 59.033 41.667 0.00 0.00 0.00 1.40
8989 10944 3.780850 AGATACTCCCTCCGTTCCAAATT 59.219 43.478 0.00 0.00 0.00 1.82
8990 10945 3.385115 AGATACTCCCTCCGTTCCAAAT 58.615 45.455 0.00 0.00 0.00 2.32
8991 10946 2.764572 GAGATACTCCCTCCGTTCCAAA 59.235 50.000 0.00 0.00 0.00 3.28
8992 10947 2.024273 AGAGATACTCCCTCCGTTCCAA 60.024 50.000 0.00 0.00 0.00 3.53
8993 10948 1.569548 AGAGATACTCCCTCCGTTCCA 59.430 52.381 0.00 0.00 0.00 3.53
8994 10949 1.957877 CAGAGATACTCCCTCCGTTCC 59.042 57.143 0.00 0.00 0.00 3.62
8995 10950 2.933573 TCAGAGATACTCCCTCCGTTC 58.066 52.381 0.00 0.00 0.00 3.95
8996 10951 3.292460 CTTCAGAGATACTCCCTCCGTT 58.708 50.000 0.00 0.00 0.00 4.44
8997 10952 2.938838 CTTCAGAGATACTCCCTCCGT 58.061 52.381 0.00 0.00 0.00 4.69
8998 10953 1.611491 GCTTCAGAGATACTCCCTCCG 59.389 57.143 0.00 0.00 0.00 4.63
8999 10954 2.672098 TGCTTCAGAGATACTCCCTCC 58.328 52.381 0.00 0.00 0.00 4.30
9000 10955 3.449018 TGTTGCTTCAGAGATACTCCCTC 59.551 47.826 0.00 0.00 0.00 4.30
9001 10956 3.196685 GTGTTGCTTCAGAGATACTCCCT 59.803 47.826 0.00 0.00 0.00 4.20
9002 10957 3.196685 AGTGTTGCTTCAGAGATACTCCC 59.803 47.826 0.00 0.00 0.00 4.30
9003 10958 4.180057 CAGTGTTGCTTCAGAGATACTCC 58.820 47.826 0.00 0.00 0.00 3.85
9004 10959 4.815269 ACAGTGTTGCTTCAGAGATACTC 58.185 43.478 0.00 0.00 0.00 2.59
9005 10960 4.881019 ACAGTGTTGCTTCAGAGATACT 57.119 40.909 0.00 0.00 0.00 2.12
9006 10961 5.006165 GCATACAGTGTTGCTTCAGAGATAC 59.994 44.000 17.70 0.00 35.95 2.24
9302 11266 4.349365 TCCAGGGTTTCAAAGTTCTTTGT 58.651 39.130 20.05 2.67 33.82 2.83
9339 11309 4.582869 TGAAGGAGATCAAACAGATGTGG 58.417 43.478 0.00 0.00 37.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.