Multiple sequence alignment - TraesCS5A01G160300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G160300 chr5A 100.000 2903 0 0 1 2903 341692732 341695634 0.000000e+00 5361.0
1 TraesCS5A01G160300 chr5A 87.188 320 35 4 425 744 341695854 341695541 2.750000e-95 359.0
2 TraesCS5A01G160300 chr5A 87.879 99 7 3 2810 2903 341693475 341693377 8.500000e-21 111.0
3 TraesCS5A01G160300 chr1A 98.350 2485 29 4 425 2903 471461028 471463506 0.000000e+00 4351.0
4 TraesCS5A01G160300 chr1A 88.534 846 55 22 1915 2746 1234585 1235402 0.000000e+00 987.0
5 TraesCS5A01G160300 chr1A 85.938 320 39 5 425 744 471463726 471463413 1.290000e-88 337.0
6 TraesCS5A01G160300 chr1A 87.879 99 7 3 2810 2903 471461347 471461249 8.500000e-21 111.0
7 TraesCS5A01G160300 chr2A 98.308 2483 31 3 425 2903 538365755 538363280 0.000000e+00 4342.0
8 TraesCS5A01G160300 chr2A 87.188 320 35 4 425 744 538363060 538363373 2.750000e-95 359.0
9 TraesCS5A01G160300 chr2A 88.889 99 6 2 2810 2903 538365437 538365535 1.830000e-22 117.0
10 TraesCS5A01G160300 chr3B 91.304 782 44 7 1914 2694 131569949 131569191 0.000000e+00 1046.0
11 TraesCS5A01G160300 chr3B 89.170 277 28 2 500 775 131570228 131569953 7.700000e-91 344.0
12 TraesCS5A01G160300 chr3B 92.398 171 13 0 2524 2694 131539769 131539599 8.040000e-61 244.0
13 TraesCS5A01G160300 chr3B 86.301 219 24 6 530 744 131528522 131528738 1.740000e-57 233.0
14 TraesCS5A01G160300 chr3B 89.542 153 8 5 2758 2903 131528790 131528639 1.370000e-43 187.0
15 TraesCS5A01G160300 chr5B 92.083 720 44 7 1914 2632 310053277 310052570 0.000000e+00 1002.0
16 TraesCS5A01G160300 chr5B 88.788 330 18 7 97 425 291107473 291107784 1.260000e-103 387.0
17 TraesCS5A01G160300 chr5B 94.488 127 7 0 2620 2746 310045142 310045016 2.280000e-46 196.0
18 TraesCS5A01G160300 chr5B 86.735 98 9 4 2810 2903 310053312 310053409 3.960000e-19 106.0
19 TraesCS5A01G160300 chr1D 93.023 688 33 10 2069 2746 2141454 2142136 0.000000e+00 990.0
20 TraesCS5A01G160300 chr1B 88.022 743 59 20 2029 2746 1432373 1433110 0.000000e+00 852.0
21 TraesCS5A01G160300 chrUn 100.000 384 0 0 893 1276 480865316 480864933 0.000000e+00 710.0
22 TraesCS5A01G160300 chr4D 86.096 374 51 1 1535 1908 25210996 25210624 4.510000e-108 401.0
23 TraesCS5A01G160300 chr4D 100.000 60 0 0 719 778 337255611 337255670 8.500000e-21 111.0
24 TraesCS5A01G160300 chr7A 84.583 240 34 3 425 663 671507301 671507064 4.840000e-58 235.0
25 TraesCS5A01G160300 chr5D 79.447 253 47 5 425 676 102024167 102024415 1.070000e-39 174.0
26 TraesCS5A01G160300 chr5D 77.241 145 24 8 952 1092 236494049 236493910 3.100000e-10 76.8
27 TraesCS5A01G160300 chr4B 100.000 60 0 0 719 778 416415188 416415247 8.500000e-21 111.0
28 TraesCS5A01G160300 chr4A 98.148 54 1 0 719 772 135360090 135360037 8.560000e-16 95.3
29 TraesCS5A01G160300 chr2D 96.491 57 2 0 719 775 7146317 7146373 8.560000e-16 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G160300 chr5A 341692732 341695634 2902 False 5361 5361 100.0000 1 2903 1 chr5A.!!$F1 2902
1 TraesCS5A01G160300 chr5A 341693377 341695854 2477 True 235 359 87.5335 425 2903 2 chr5A.!!$R1 2478
2 TraesCS5A01G160300 chr1A 471461028 471463506 2478 False 4351 4351 98.3500 425 2903 1 chr1A.!!$F2 2478
3 TraesCS5A01G160300 chr1A 1234585 1235402 817 False 987 987 88.5340 1915 2746 1 chr1A.!!$F1 831
4 TraesCS5A01G160300 chr1A 471461249 471463726 2477 True 224 337 86.9085 425 2903 2 chr1A.!!$R1 2478
5 TraesCS5A01G160300 chr2A 538363280 538365755 2475 True 4342 4342 98.3080 425 2903 1 chr2A.!!$R1 2478
6 TraesCS5A01G160300 chr2A 538363060 538365535 2475 False 238 359 88.0385 425 2903 2 chr2A.!!$F1 2478
7 TraesCS5A01G160300 chr3B 131569191 131570228 1037 True 695 1046 90.2370 500 2694 2 chr3B.!!$R3 2194
8 TraesCS5A01G160300 chr5B 310052570 310053277 707 True 1002 1002 92.0830 1914 2632 1 chr5B.!!$R2 718
9 TraesCS5A01G160300 chr1D 2141454 2142136 682 False 990 990 93.0230 2069 2746 1 chr1D.!!$F1 677
10 TraesCS5A01G160300 chr1B 1432373 1433110 737 False 852 852 88.0220 2029 2746 1 chr1B.!!$F1 717

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
51 52 0.033228 CGGTCCATTGCAGCCAAAAA 59.967 50.0 0.0 0.0 34.05 1.94 F
408 409 0.102481 TATTTCTCGTCGGCTCCTGC 59.898 55.0 0.0 0.0 38.76 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1828 2466 1.559682 ACGGGTTACATCAGCAGGAAT 59.440 47.619 0.0 0.0 0.00 3.01 R
2746 3759 4.158025 ACTGGGACTTTGAGAGTACGTATG 59.842 45.833 0.0 0.0 40.41 2.39 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 3.797331 AGCTGGACTGCTGCTACA 58.203 55.556 0.00 0.00 42.33 2.74
20 21 1.294780 AGCTGGACTGCTGCTACAC 59.705 57.895 0.00 0.00 42.33 2.90
21 22 1.190833 AGCTGGACTGCTGCTACACT 61.191 55.000 0.00 0.00 42.33 3.55
22 23 1.018226 GCTGGACTGCTGCTACACTG 61.018 60.000 0.00 0.00 0.00 3.66
23 24 0.319728 CTGGACTGCTGCTACACTGT 59.680 55.000 0.00 0.00 0.00 3.55
24 25 0.318441 TGGACTGCTGCTACACTGTC 59.682 55.000 0.00 0.31 34.92 3.51
25 26 0.605589 GGACTGCTGCTACACTGTCT 59.394 55.000 0.00 0.00 35.70 3.41
26 27 1.403514 GGACTGCTGCTACACTGTCTC 60.404 57.143 0.00 0.00 35.70 3.36
27 28 1.270826 GACTGCTGCTACACTGTCTCA 59.729 52.381 0.00 0.00 33.45 3.27
28 29 1.271934 ACTGCTGCTACACTGTCTCAG 59.728 52.381 0.00 6.34 37.52 3.35
29 30 1.543358 CTGCTGCTACACTGTCTCAGA 59.457 52.381 12.38 0.00 35.18 3.27
30 31 1.270826 TGCTGCTACACTGTCTCAGAC 59.729 52.381 0.00 0.00 35.18 3.51
31 32 1.543802 GCTGCTACACTGTCTCAGACT 59.456 52.381 6.33 0.00 35.18 3.24
32 33 2.415357 GCTGCTACACTGTCTCAGACTC 60.415 54.545 6.33 0.00 35.18 3.36
33 34 1.807142 TGCTACACTGTCTCAGACTCG 59.193 52.381 6.33 0.00 35.18 4.18
34 35 1.131504 GCTACACTGTCTCAGACTCGG 59.868 57.143 6.33 0.00 35.18 4.63
35 36 2.428491 CTACACTGTCTCAGACTCGGT 58.572 52.381 6.33 3.88 35.18 4.69
36 37 1.240256 ACACTGTCTCAGACTCGGTC 58.760 55.000 6.33 0.00 35.18 4.79
37 38 0.523966 CACTGTCTCAGACTCGGTCC 59.476 60.000 6.33 0.00 35.18 4.46
38 39 0.110678 ACTGTCTCAGACTCGGTCCA 59.889 55.000 6.33 0.00 35.18 4.02
39 40 1.272203 ACTGTCTCAGACTCGGTCCAT 60.272 52.381 6.33 0.00 35.18 3.41
40 41 1.821753 CTGTCTCAGACTCGGTCCATT 59.178 52.381 6.33 0.00 32.44 3.16
41 42 1.546029 TGTCTCAGACTCGGTCCATTG 59.454 52.381 6.33 0.00 33.15 2.82
42 43 0.532573 TCTCAGACTCGGTCCATTGC 59.467 55.000 1.06 0.00 32.18 3.56
43 44 0.247460 CTCAGACTCGGTCCATTGCA 59.753 55.000 1.06 0.00 32.18 4.08
44 45 0.247460 TCAGACTCGGTCCATTGCAG 59.753 55.000 0.00 0.00 32.18 4.41
45 46 1.078848 AGACTCGGTCCATTGCAGC 60.079 57.895 0.00 0.00 32.18 5.25
46 47 2.045926 ACTCGGTCCATTGCAGCC 60.046 61.111 0.00 0.00 0.00 4.85
47 48 2.046023 CTCGGTCCATTGCAGCCA 60.046 61.111 0.00 0.00 0.00 4.75
48 49 1.675310 CTCGGTCCATTGCAGCCAA 60.675 57.895 0.00 0.00 35.01 4.52
49 50 1.228398 TCGGTCCATTGCAGCCAAA 60.228 52.632 0.00 0.00 34.05 3.28
50 51 0.825425 TCGGTCCATTGCAGCCAAAA 60.825 50.000 0.00 0.00 34.05 2.44
51 52 0.033228 CGGTCCATTGCAGCCAAAAA 59.967 50.000 0.00 0.00 34.05 1.94
52 53 1.511850 GGTCCATTGCAGCCAAAAAC 58.488 50.000 0.00 0.00 34.05 2.43
53 54 1.511850 GTCCATTGCAGCCAAAAACC 58.488 50.000 0.00 0.00 34.05 3.27
54 55 0.033228 TCCATTGCAGCCAAAAACCG 59.967 50.000 0.00 0.00 34.05 4.44
55 56 0.249826 CCATTGCAGCCAAAAACCGT 60.250 50.000 0.00 0.00 34.05 4.83
56 57 1.139163 CATTGCAGCCAAAAACCGTC 58.861 50.000 0.00 0.00 34.05 4.79
57 58 1.039856 ATTGCAGCCAAAAACCGTCT 58.960 45.000 0.00 0.00 34.05 4.18
58 59 0.383949 TTGCAGCCAAAAACCGTCTC 59.616 50.000 0.00 0.00 0.00 3.36
59 60 1.082104 GCAGCCAAAAACCGTCTCG 60.082 57.895 0.00 0.00 0.00 4.04
60 61 1.782028 GCAGCCAAAAACCGTCTCGT 61.782 55.000 0.00 0.00 0.00 4.18
61 62 0.234884 CAGCCAAAAACCGTCTCGTC 59.765 55.000 0.00 0.00 0.00 4.20
62 63 0.106149 AGCCAAAAACCGTCTCGTCT 59.894 50.000 0.00 0.00 0.00 4.18
63 64 1.342174 AGCCAAAAACCGTCTCGTCTA 59.658 47.619 0.00 0.00 0.00 2.59
64 65 2.137523 GCCAAAAACCGTCTCGTCTAA 58.862 47.619 0.00 0.00 0.00 2.10
65 66 2.740447 GCCAAAAACCGTCTCGTCTAAT 59.260 45.455 0.00 0.00 0.00 1.73
66 67 3.928375 GCCAAAAACCGTCTCGTCTAATA 59.072 43.478 0.00 0.00 0.00 0.98
67 68 4.201656 GCCAAAAACCGTCTCGTCTAATAC 60.202 45.833 0.00 0.00 0.00 1.89
68 69 5.166398 CCAAAAACCGTCTCGTCTAATACT 58.834 41.667 0.00 0.00 0.00 2.12
69 70 6.324819 CCAAAAACCGTCTCGTCTAATACTA 58.675 40.000 0.00 0.00 0.00 1.82
70 71 6.252228 CCAAAAACCGTCTCGTCTAATACTAC 59.748 42.308 0.00 0.00 0.00 2.73
71 72 6.749923 AAAACCGTCTCGTCTAATACTACT 57.250 37.500 0.00 0.00 0.00 2.57
72 73 7.849804 AAAACCGTCTCGTCTAATACTACTA 57.150 36.000 0.00 0.00 0.00 1.82
73 74 6.836577 AACCGTCTCGTCTAATACTACTAC 57.163 41.667 0.00 0.00 0.00 2.73
74 75 6.155475 ACCGTCTCGTCTAATACTACTACT 57.845 41.667 0.00 0.00 0.00 2.57
75 76 6.212955 ACCGTCTCGTCTAATACTACTACTC 58.787 44.000 0.00 0.00 0.00 2.59
76 77 5.633182 CCGTCTCGTCTAATACTACTACTCC 59.367 48.000 0.00 0.00 0.00 3.85
77 78 5.633182 CGTCTCGTCTAATACTACTACTCCC 59.367 48.000 0.00 0.00 0.00 4.30
78 79 6.516527 CGTCTCGTCTAATACTACTACTCCCT 60.517 46.154 0.00 0.00 0.00 4.20
79 80 7.216494 GTCTCGTCTAATACTACTACTCCCTT 58.784 42.308 0.00 0.00 0.00 3.95
80 81 7.714813 GTCTCGTCTAATACTACTACTCCCTTT 59.285 40.741 0.00 0.00 0.00 3.11
81 82 8.928448 TCTCGTCTAATACTACTACTCCCTTTA 58.072 37.037 0.00 0.00 0.00 1.85
82 83 8.894768 TCGTCTAATACTACTACTCCCTTTAC 57.105 38.462 0.00 0.00 0.00 2.01
83 84 7.934120 TCGTCTAATACTACTACTCCCTTTACC 59.066 40.741 0.00 0.00 0.00 2.85
84 85 7.716998 CGTCTAATACTACTACTCCCTTTACCA 59.283 40.741 0.00 0.00 0.00 3.25
85 86 8.845227 GTCTAATACTACTACTCCCTTTACCAC 58.155 40.741 0.00 0.00 0.00 4.16
86 87 8.560039 TCTAATACTACTACTCCCTTTACCACA 58.440 37.037 0.00 0.00 0.00 4.17
87 88 9.193806 CTAATACTACTACTCCCTTTACCACAA 57.806 37.037 0.00 0.00 0.00 3.33
88 89 5.997384 ACTACTACTCCCTTTACCACAAG 57.003 43.478 0.00 0.00 0.00 3.16
89 90 5.400870 ACTACTACTCCCTTTACCACAAGT 58.599 41.667 0.00 0.00 0.00 3.16
90 91 6.555711 ACTACTACTCCCTTTACCACAAGTA 58.444 40.000 0.00 0.00 0.00 2.24
91 92 7.012607 ACTACTACTCCCTTTACCACAAGTAA 58.987 38.462 0.00 0.00 39.22 2.24
92 93 6.947376 ACTACTCCCTTTACCACAAGTAAT 57.053 37.500 0.00 0.00 40.62 1.89
93 94 9.193806 CTACTACTCCCTTTACCACAAGTAATA 57.806 37.037 0.00 0.00 40.62 0.98
94 95 8.619683 ACTACTCCCTTTACCACAAGTAATAT 57.380 34.615 0.00 0.00 40.62 1.28
95 96 8.483758 ACTACTCCCTTTACCACAAGTAATATG 58.516 37.037 0.00 0.00 40.62 1.78
96 97 6.659824 ACTCCCTTTACCACAAGTAATATGG 58.340 40.000 0.00 0.00 40.62 2.74
97 98 6.445786 ACTCCCTTTACCACAAGTAATATGGA 59.554 38.462 0.70 0.00 40.62 3.41
98 99 7.128883 ACTCCCTTTACCACAAGTAATATGGAT 59.871 37.037 0.70 0.00 40.62 3.41
99 100 7.514721 TCCCTTTACCACAAGTAATATGGATC 58.485 38.462 0.70 0.00 40.62 3.36
100 101 6.426937 CCCTTTACCACAAGTAATATGGATCG 59.573 42.308 0.70 0.00 40.62 3.69
101 102 6.426937 CCTTTACCACAAGTAATATGGATCGG 59.573 42.308 0.70 0.00 40.62 4.18
102 103 6.734502 TTACCACAAGTAATATGGATCGGA 57.265 37.500 0.70 0.00 35.98 4.55
103 104 5.215252 ACCACAAGTAATATGGATCGGAG 57.785 43.478 0.70 0.00 36.94 4.63
104 105 4.040461 ACCACAAGTAATATGGATCGGAGG 59.960 45.833 0.70 0.00 36.94 4.30
105 106 4.563580 CCACAAGTAATATGGATCGGAGGG 60.564 50.000 0.00 0.00 35.33 4.30
106 107 4.283467 CACAAGTAATATGGATCGGAGGGA 59.717 45.833 0.00 0.00 0.00 4.20
107 108 5.046304 CACAAGTAATATGGATCGGAGGGAT 60.046 44.000 0.00 0.00 38.35 3.85
108 109 5.548056 ACAAGTAATATGGATCGGAGGGATT 59.452 40.000 0.00 0.00 34.82 3.01
109 110 6.729100 ACAAGTAATATGGATCGGAGGGATTA 59.271 38.462 0.00 0.00 34.82 1.75
110 111 7.093289 ACAAGTAATATGGATCGGAGGGATTAG 60.093 40.741 0.00 0.00 34.82 1.73
111 112 4.762289 AATATGGATCGGAGGGATTAGC 57.238 45.455 0.00 0.00 34.82 3.09
112 113 2.030027 ATGGATCGGAGGGATTAGCA 57.970 50.000 0.00 0.00 34.82 3.49
113 114 1.801242 TGGATCGGAGGGATTAGCAA 58.199 50.000 0.00 0.00 34.82 3.91
114 115 1.694150 TGGATCGGAGGGATTAGCAAG 59.306 52.381 0.00 0.00 34.82 4.01
115 116 1.609320 GGATCGGAGGGATTAGCAAGC 60.609 57.143 0.00 0.00 34.82 4.01
116 117 1.346068 GATCGGAGGGATTAGCAAGCT 59.654 52.381 0.00 0.00 34.82 3.74
117 118 0.465705 TCGGAGGGATTAGCAAGCTG 59.534 55.000 4.53 0.00 0.00 4.24
118 119 1.162800 CGGAGGGATTAGCAAGCTGC 61.163 60.000 4.53 0.00 45.46 5.25
134 135 3.310303 GCTGCTATTAGCTTGTTGACG 57.690 47.619 16.29 0.00 42.97 4.35
135 136 2.930040 GCTGCTATTAGCTTGTTGACGA 59.070 45.455 16.29 0.00 42.97 4.20
136 137 3.242123 GCTGCTATTAGCTTGTTGACGAC 60.242 47.826 16.29 0.00 42.97 4.34
137 138 2.921121 TGCTATTAGCTTGTTGACGACG 59.079 45.455 16.29 0.00 42.97 5.12
138 139 3.176708 GCTATTAGCTTGTTGACGACGA 58.823 45.455 8.47 0.00 38.45 4.20
139 140 3.240861 GCTATTAGCTTGTTGACGACGAG 59.759 47.826 8.47 5.77 41.91 4.18
143 144 2.435741 CTTGTTGACGACGAGCTCC 58.564 57.895 8.47 0.00 33.11 4.70
144 145 0.318699 CTTGTTGACGACGAGCTCCA 60.319 55.000 8.47 0.00 33.11 3.86
145 146 0.318699 TTGTTGACGACGAGCTCCAG 60.319 55.000 8.47 2.00 0.00 3.86
146 147 1.286260 GTTGACGACGAGCTCCAGT 59.714 57.895 8.47 5.58 0.00 4.00
147 148 1.004277 GTTGACGACGAGCTCCAGTG 61.004 60.000 8.47 0.00 0.00 3.66
148 149 1.170290 TTGACGACGAGCTCCAGTGA 61.170 55.000 8.47 0.00 0.00 3.41
149 150 1.135731 GACGACGAGCTCCAGTGAG 59.864 63.158 8.47 0.70 41.84 3.51
172 173 4.302559 CCTATTAGGGCCCTTTCCATAC 57.697 50.000 34.04 0.00 0.00 2.39
173 174 3.655777 CCTATTAGGGCCCTTTCCATACA 59.344 47.826 34.04 5.93 0.00 2.29
174 175 3.884037 ATTAGGGCCCTTTCCATACAG 57.116 47.619 34.04 0.00 0.00 2.74
175 176 0.843984 TAGGGCCCTTTCCATACAGC 59.156 55.000 34.04 0.00 0.00 4.40
176 177 1.455773 GGGCCCTTTCCATACAGCC 60.456 63.158 17.04 0.00 39.73 4.85
177 178 1.823899 GGCCCTTTCCATACAGCCG 60.824 63.158 0.00 0.00 0.00 5.52
178 179 1.823899 GCCCTTTCCATACAGCCGG 60.824 63.158 0.00 0.00 0.00 6.13
179 180 1.823899 CCCTTTCCATACAGCCGGC 60.824 63.158 21.89 21.89 0.00 6.13
180 181 1.077787 CCTTTCCATACAGCCGGCA 60.078 57.895 31.54 8.70 0.00 5.69
181 182 0.679640 CCTTTCCATACAGCCGGCAA 60.680 55.000 31.54 14.46 0.00 4.52
182 183 1.392589 CTTTCCATACAGCCGGCAAT 58.607 50.000 31.54 18.90 0.00 3.56
183 184 2.571212 CTTTCCATACAGCCGGCAATA 58.429 47.619 31.54 20.62 0.00 1.90
184 185 2.949177 TTCCATACAGCCGGCAATAT 57.051 45.000 31.54 21.99 0.00 1.28
185 186 4.323417 CTTTCCATACAGCCGGCAATATA 58.677 43.478 31.54 15.12 0.00 0.86
186 187 4.568072 TTCCATACAGCCGGCAATATAT 57.432 40.909 31.54 16.77 0.00 0.86
187 188 5.685520 TTCCATACAGCCGGCAATATATA 57.314 39.130 31.54 13.18 0.00 0.86
188 189 5.887214 TCCATACAGCCGGCAATATATAT 57.113 39.130 31.54 13.14 0.00 0.86
189 190 6.987403 TCCATACAGCCGGCAATATATATA 57.013 37.500 31.54 8.73 0.00 0.86
190 191 6.993079 TCCATACAGCCGGCAATATATATAG 58.007 40.000 31.54 12.31 0.00 1.31
191 192 6.780522 TCCATACAGCCGGCAATATATATAGA 59.219 38.462 31.54 11.62 0.00 1.98
192 193 6.868864 CCATACAGCCGGCAATATATATAGAC 59.131 42.308 31.54 0.00 0.00 2.59
193 194 5.277857 ACAGCCGGCAATATATATAGACC 57.722 43.478 31.54 0.00 0.00 3.85
194 195 4.714802 ACAGCCGGCAATATATATAGACCA 59.285 41.667 31.54 0.00 0.00 4.02
195 196 5.188948 ACAGCCGGCAATATATATAGACCAA 59.811 40.000 31.54 0.00 0.00 3.67
196 197 6.112734 CAGCCGGCAATATATATAGACCAAA 58.887 40.000 31.54 0.00 0.00 3.28
197 198 6.258727 CAGCCGGCAATATATATAGACCAAAG 59.741 42.308 31.54 0.00 0.00 2.77
198 199 5.007724 GCCGGCAATATATATAGACCAAAGC 59.992 44.000 24.80 0.00 0.00 3.51
199 200 6.112734 CCGGCAATATATATAGACCAAAGCA 58.887 40.000 0.00 0.00 0.00 3.91
200 201 6.767902 CCGGCAATATATATAGACCAAAGCAT 59.232 38.462 0.00 0.00 0.00 3.79
201 202 7.283127 CCGGCAATATATATAGACCAAAGCATT 59.717 37.037 0.00 0.00 0.00 3.56
202 203 8.124823 CGGCAATATATATAGACCAAAGCATTG 58.875 37.037 0.00 0.00 36.25 2.82
203 204 9.177608 GGCAATATATATAGACCAAAGCATTGA 57.822 33.333 2.61 0.00 38.94 2.57
209 210 7.961326 ATATAGACCAAAGCATTGAGGTTTT 57.039 32.000 2.61 0.00 45.06 2.43
210 211 4.590850 AGACCAAAGCATTGAGGTTTTC 57.409 40.909 2.61 0.00 45.06 2.29
211 212 3.960102 AGACCAAAGCATTGAGGTTTTCA 59.040 39.130 2.61 0.00 45.06 2.69
212 213 4.038402 AGACCAAAGCATTGAGGTTTTCAG 59.962 41.667 2.61 0.00 45.06 3.02
213 214 3.070015 ACCAAAGCATTGAGGTTTTCAGG 59.930 43.478 2.61 0.00 45.06 3.86
214 215 3.321682 CCAAAGCATTGAGGTTTTCAGGA 59.678 43.478 2.61 0.00 45.06 3.86
215 216 4.553323 CAAAGCATTGAGGTTTTCAGGAG 58.447 43.478 0.00 0.00 45.06 3.69
216 217 3.795688 AGCATTGAGGTTTTCAGGAGA 57.204 42.857 0.00 0.00 37.07 3.71
217 218 4.313020 AGCATTGAGGTTTTCAGGAGAT 57.687 40.909 0.00 0.00 37.07 2.75
218 219 5.441718 AGCATTGAGGTTTTCAGGAGATA 57.558 39.130 0.00 0.00 37.07 1.98
219 220 5.435291 AGCATTGAGGTTTTCAGGAGATAG 58.565 41.667 0.00 0.00 37.07 2.08
220 221 5.190528 AGCATTGAGGTTTTCAGGAGATAGA 59.809 40.000 0.00 0.00 37.07 1.98
221 222 5.526846 GCATTGAGGTTTTCAGGAGATAGAG 59.473 44.000 0.00 0.00 37.07 2.43
222 223 6.631314 GCATTGAGGTTTTCAGGAGATAGAGA 60.631 42.308 0.00 0.00 37.07 3.10
223 224 6.537453 TTGAGGTTTTCAGGAGATAGAGAG 57.463 41.667 0.00 0.00 37.07 3.20
224 225 5.832221 TGAGGTTTTCAGGAGATAGAGAGA 58.168 41.667 0.00 0.00 0.00 3.10
225 226 5.890985 TGAGGTTTTCAGGAGATAGAGAGAG 59.109 44.000 0.00 0.00 0.00 3.20
226 227 6.086011 AGGTTTTCAGGAGATAGAGAGAGA 57.914 41.667 0.00 0.00 0.00 3.10
227 228 5.891551 AGGTTTTCAGGAGATAGAGAGAGAC 59.108 44.000 0.00 0.00 0.00 3.36
228 229 5.220970 GGTTTTCAGGAGATAGAGAGAGACG 60.221 48.000 0.00 0.00 0.00 4.18
229 230 3.762407 TCAGGAGATAGAGAGAGACGG 57.238 52.381 0.00 0.00 0.00 4.79
230 231 3.310193 TCAGGAGATAGAGAGAGACGGA 58.690 50.000 0.00 0.00 0.00 4.69
231 232 3.323691 TCAGGAGATAGAGAGAGACGGAG 59.676 52.174 0.00 0.00 0.00 4.63
232 233 2.637872 AGGAGATAGAGAGAGACGGAGG 59.362 54.545 0.00 0.00 0.00 4.30
233 234 2.370849 GGAGATAGAGAGAGACGGAGGT 59.629 54.545 0.00 0.00 0.00 3.85
234 235 3.556423 GGAGATAGAGAGAGACGGAGGTC 60.556 56.522 0.00 0.00 43.76 3.85
235 236 3.042682 AGATAGAGAGAGACGGAGGTCA 58.957 50.000 0.00 0.00 45.92 4.02
236 237 3.650942 AGATAGAGAGAGACGGAGGTCAT 59.349 47.826 0.00 0.00 45.92 3.06
237 238 2.818751 AGAGAGAGACGGAGGTCATT 57.181 50.000 0.00 0.00 45.92 2.57
238 239 2.374184 AGAGAGAGACGGAGGTCATTG 58.626 52.381 0.00 0.00 45.92 2.82
239 240 1.407258 GAGAGAGACGGAGGTCATTGG 59.593 57.143 0.00 0.00 45.92 3.16
240 241 1.006043 AGAGAGACGGAGGTCATTGGA 59.994 52.381 0.00 0.00 45.92 3.53
241 242 1.135333 GAGAGACGGAGGTCATTGGAC 59.865 57.143 0.00 0.00 45.92 4.02
242 243 1.187087 GAGACGGAGGTCATTGGACT 58.813 55.000 0.00 0.00 45.92 3.85
243 244 0.898320 AGACGGAGGTCATTGGACTG 59.102 55.000 0.00 0.00 45.92 3.51
244 245 0.108138 GACGGAGGTCATTGGACTGG 60.108 60.000 0.00 0.00 43.77 4.00
245 246 0.544357 ACGGAGGTCATTGGACTGGA 60.544 55.000 0.00 0.00 43.77 3.86
246 247 0.176680 CGGAGGTCATTGGACTGGAG 59.823 60.000 0.00 0.00 43.77 3.86
247 248 1.280457 GGAGGTCATTGGACTGGAGT 58.720 55.000 0.00 0.00 43.77 3.85
248 249 2.467880 GGAGGTCATTGGACTGGAGTA 58.532 52.381 0.00 0.00 43.77 2.59
249 250 3.041946 GGAGGTCATTGGACTGGAGTAT 58.958 50.000 0.00 0.00 43.77 2.12
250 251 3.456277 GGAGGTCATTGGACTGGAGTATT 59.544 47.826 0.00 0.00 43.77 1.89
251 252 4.443598 GGAGGTCATTGGACTGGAGTATTC 60.444 50.000 0.00 0.00 43.77 1.75
252 253 3.456277 AGGTCATTGGACTGGAGTATTCC 59.544 47.826 0.00 0.00 43.77 3.01
253 254 3.458189 GTCATTGGACTGGAGTATTCCG 58.542 50.000 0.00 0.00 39.24 4.30
254 255 4.291984 GTCATTGGACTGGAGTATTCCGC 61.292 52.174 0.00 0.00 39.24 5.54
255 256 6.484168 GTCATTGGACTGGAGTATTCCGCT 62.484 50.000 0.00 0.00 39.24 5.52
256 257 7.874358 GTCATTGGACTGGAGTATTCCGCTT 62.874 48.000 0.00 0.00 39.24 4.68
264 265 2.683362 GGAGTATTCCGCTTCTTTTGGG 59.317 50.000 0.00 0.00 32.79 4.12
265 266 2.683362 GAGTATTCCGCTTCTTTTGGGG 59.317 50.000 0.00 0.00 38.66 4.96
266 267 1.134367 GTATTCCGCTTCTTTTGGGGC 59.866 52.381 0.00 0.00 37.43 5.80
267 268 0.541764 ATTCCGCTTCTTTTGGGGCA 60.542 50.000 0.00 0.00 37.43 5.36
268 269 1.178534 TTCCGCTTCTTTTGGGGCAG 61.179 55.000 0.00 0.00 37.43 4.85
269 270 1.603455 CCGCTTCTTTTGGGGCAGA 60.603 57.895 0.00 0.00 0.00 4.26
270 271 1.178534 CCGCTTCTTTTGGGGCAGAA 61.179 55.000 0.00 0.00 0.00 3.02
271 272 0.242017 CGCTTCTTTTGGGGCAGAAG 59.758 55.000 7.06 7.06 46.12 2.85
272 273 1.620822 GCTTCTTTTGGGGCAGAAGA 58.379 50.000 13.85 2.21 46.23 2.87
273 274 2.174360 GCTTCTTTTGGGGCAGAAGAT 58.826 47.619 13.85 0.00 46.23 2.40
274 275 2.165234 GCTTCTTTTGGGGCAGAAGATC 59.835 50.000 13.85 0.00 46.23 2.75
275 276 3.424703 CTTCTTTTGGGGCAGAAGATCA 58.575 45.455 5.80 0.00 46.23 2.92
276 277 3.077484 TCTTTTGGGGCAGAAGATCAG 57.923 47.619 0.00 0.00 31.22 2.90
277 278 2.644299 TCTTTTGGGGCAGAAGATCAGA 59.356 45.455 0.00 0.00 31.22 3.27
278 279 2.795231 TTTGGGGCAGAAGATCAGAG 57.205 50.000 0.00 0.00 0.00 3.35
279 280 0.914644 TTGGGGCAGAAGATCAGAGG 59.085 55.000 0.00 0.00 0.00 3.69
280 281 0.984961 TGGGGCAGAAGATCAGAGGG 60.985 60.000 0.00 0.00 0.00 4.30
281 282 0.985490 GGGGCAGAAGATCAGAGGGT 60.985 60.000 0.00 0.00 0.00 4.34
282 283 0.467804 GGGCAGAAGATCAGAGGGTC 59.532 60.000 0.00 0.00 0.00 4.46
283 284 0.103937 GGCAGAAGATCAGAGGGTCG 59.896 60.000 0.00 0.00 0.00 4.79
284 285 0.103937 GCAGAAGATCAGAGGGTCGG 59.896 60.000 0.00 0.00 0.00 4.79
285 286 1.479709 CAGAAGATCAGAGGGTCGGT 58.520 55.000 0.00 0.00 0.00 4.69
286 287 1.135915 CAGAAGATCAGAGGGTCGGTG 59.864 57.143 0.00 0.00 0.00 4.94
287 288 0.179097 GAAGATCAGAGGGTCGGTGC 60.179 60.000 0.00 0.00 0.00 5.01
288 289 1.949847 AAGATCAGAGGGTCGGTGCG 61.950 60.000 0.00 0.00 0.00 5.34
289 290 3.432051 GATCAGAGGGTCGGTGCGG 62.432 68.421 0.00 0.00 0.00 5.69
290 291 3.957435 ATCAGAGGGTCGGTGCGGA 62.957 63.158 0.00 0.00 0.00 5.54
291 292 3.461773 CAGAGGGTCGGTGCGGAT 61.462 66.667 0.00 0.00 0.00 4.18
292 293 2.683933 AGAGGGTCGGTGCGGATT 60.684 61.111 0.00 0.00 0.00 3.01
293 294 1.380785 AGAGGGTCGGTGCGGATTA 60.381 57.895 0.00 0.00 0.00 1.75
294 295 0.759436 AGAGGGTCGGTGCGGATTAT 60.759 55.000 0.00 0.00 0.00 1.28
295 296 0.963962 GAGGGTCGGTGCGGATTATA 59.036 55.000 0.00 0.00 0.00 0.98
296 297 1.549170 GAGGGTCGGTGCGGATTATAT 59.451 52.381 0.00 0.00 0.00 0.86
297 298 2.756760 GAGGGTCGGTGCGGATTATATA 59.243 50.000 0.00 0.00 0.00 0.86
298 299 3.371965 AGGGTCGGTGCGGATTATATAT 58.628 45.455 0.00 0.00 0.00 0.86
299 300 4.539726 AGGGTCGGTGCGGATTATATATA 58.460 43.478 0.00 0.00 0.00 0.86
300 301 4.340381 AGGGTCGGTGCGGATTATATATAC 59.660 45.833 0.00 0.00 0.00 1.47
301 302 4.285292 GGTCGGTGCGGATTATATATACG 58.715 47.826 0.00 0.00 0.00 3.06
302 303 4.201950 GGTCGGTGCGGATTATATATACGT 60.202 45.833 0.00 0.00 0.00 3.57
303 304 5.007626 GGTCGGTGCGGATTATATATACGTA 59.992 44.000 0.00 0.00 0.00 3.57
304 305 6.132056 GTCGGTGCGGATTATATATACGTAG 58.868 44.000 0.08 0.00 0.00 3.51
305 306 5.237127 TCGGTGCGGATTATATATACGTAGG 59.763 44.000 0.08 0.00 0.00 3.18
306 307 5.008019 CGGTGCGGATTATATATACGTAGGT 59.992 44.000 0.08 0.00 0.00 3.08
307 308 6.202762 CGGTGCGGATTATATATACGTAGGTA 59.797 42.308 0.08 0.00 0.00 3.08
308 309 7.570140 CGGTGCGGATTATATATACGTAGGTAG 60.570 44.444 0.08 0.00 30.81 3.18
309 310 7.227512 GGTGCGGATTATATATACGTAGGTAGT 59.772 40.741 0.08 0.00 30.81 2.73
310 311 9.261180 GTGCGGATTATATATACGTAGGTAGTA 57.739 37.037 0.08 0.00 30.81 1.82
311 312 9.481340 TGCGGATTATATATACGTAGGTAGTAG 57.519 37.037 0.08 0.00 30.81 2.57
312 313 9.698309 GCGGATTATATATACGTAGGTAGTAGA 57.302 37.037 0.08 0.00 30.81 2.59
318 319 4.632327 ATACGTAGGTAGTAGAGGGTCC 57.368 50.000 0.08 0.00 30.81 4.46
319 320 2.486716 ACGTAGGTAGTAGAGGGTCCT 58.513 52.381 0.00 0.00 0.00 3.85
320 321 2.437651 ACGTAGGTAGTAGAGGGTCCTC 59.562 54.545 8.91 8.91 43.03 3.71
321 322 2.437281 CGTAGGTAGTAGAGGGTCCTCA 59.563 54.545 18.17 2.98 44.99 3.86
322 323 3.494749 CGTAGGTAGTAGAGGGTCCTCAG 60.495 56.522 18.17 0.00 44.99 3.35
323 324 2.861261 AGGTAGTAGAGGGTCCTCAGA 58.139 52.381 18.17 3.97 44.99 3.27
324 325 2.510800 AGGTAGTAGAGGGTCCTCAGAC 59.489 54.545 18.17 14.61 44.99 3.51
332 333 4.120244 GTCCTCAGACCTCAGCCA 57.880 61.111 0.00 0.00 37.00 4.75
333 334 1.594310 GTCCTCAGACCTCAGCCAC 59.406 63.158 0.00 0.00 37.00 5.01
334 335 1.610673 TCCTCAGACCTCAGCCACC 60.611 63.158 0.00 0.00 0.00 4.61
335 336 2.664081 CCTCAGACCTCAGCCACCC 61.664 68.421 0.00 0.00 0.00 4.61
336 337 2.607750 TCAGACCTCAGCCACCCC 60.608 66.667 0.00 0.00 0.00 4.95
337 338 2.930019 CAGACCTCAGCCACCCCA 60.930 66.667 0.00 0.00 0.00 4.96
338 339 2.121963 AGACCTCAGCCACCCCAA 60.122 61.111 0.00 0.00 0.00 4.12
339 340 1.774217 AGACCTCAGCCACCCCAAA 60.774 57.895 0.00 0.00 0.00 3.28
340 341 1.303643 GACCTCAGCCACCCCAAAG 60.304 63.158 0.00 0.00 0.00 2.77
341 342 2.677875 CCTCAGCCACCCCAAAGC 60.678 66.667 0.00 0.00 0.00 3.51
342 343 2.115910 CTCAGCCACCCCAAAGCA 59.884 61.111 0.00 0.00 0.00 3.91
343 344 1.531365 CTCAGCCACCCCAAAGCAA 60.531 57.895 0.00 0.00 0.00 3.91
344 345 0.901580 CTCAGCCACCCCAAAGCAAT 60.902 55.000 0.00 0.00 0.00 3.56
345 346 0.407528 TCAGCCACCCCAAAGCAATA 59.592 50.000 0.00 0.00 0.00 1.90
346 347 0.819582 CAGCCACCCCAAAGCAATAG 59.180 55.000 0.00 0.00 0.00 1.73
347 348 0.324645 AGCCACCCCAAAGCAATAGG 60.325 55.000 0.00 0.00 0.00 2.57
348 349 1.960040 GCCACCCCAAAGCAATAGGC 61.960 60.000 0.00 0.00 45.30 3.93
365 366 3.791539 CAGCGGCTGCAGAAGTAG 58.208 61.111 21.93 3.91 46.23 2.57
372 373 2.265739 TGCAGAAGTAGCAGGGCG 59.734 61.111 0.00 0.00 37.02 6.13
373 374 2.512515 GCAGAAGTAGCAGGGCGG 60.513 66.667 0.00 0.00 0.00 6.13
374 375 2.982130 CAGAAGTAGCAGGGCGGT 59.018 61.111 0.00 0.00 0.00 5.68
375 376 1.448540 CAGAAGTAGCAGGGCGGTG 60.449 63.158 0.00 0.00 0.00 4.94
376 377 2.820037 GAAGTAGCAGGGCGGTGC 60.820 66.667 2.39 2.39 44.35 5.01
398 399 4.918037 CGTAGCAGGTAAGTATTTCTCGT 58.082 43.478 0.00 0.00 0.00 4.18
399 400 4.968788 CGTAGCAGGTAAGTATTTCTCGTC 59.031 45.833 0.00 0.00 0.00 4.20
400 401 4.030134 AGCAGGTAAGTATTTCTCGTCG 57.970 45.455 0.00 0.00 0.00 5.12
401 402 3.114065 GCAGGTAAGTATTTCTCGTCGG 58.886 50.000 0.00 0.00 0.00 4.79
402 403 3.114065 CAGGTAAGTATTTCTCGTCGGC 58.886 50.000 0.00 0.00 0.00 5.54
403 404 3.022406 AGGTAAGTATTTCTCGTCGGCT 58.978 45.455 0.00 0.00 0.00 5.52
404 405 3.066481 AGGTAAGTATTTCTCGTCGGCTC 59.934 47.826 0.00 0.00 0.00 4.70
405 406 2.580966 AAGTATTTCTCGTCGGCTCC 57.419 50.000 0.00 0.00 0.00 4.70
406 407 1.765230 AGTATTTCTCGTCGGCTCCT 58.235 50.000 0.00 0.00 0.00 3.69
407 408 1.405821 AGTATTTCTCGTCGGCTCCTG 59.594 52.381 0.00 0.00 0.00 3.86
408 409 0.102481 TATTTCTCGTCGGCTCCTGC 59.898 55.000 0.00 0.00 38.76 4.85
418 419 2.514824 GCTCCTGCCGGATGGTTC 60.515 66.667 5.05 0.00 39.01 3.62
419 420 2.989639 CTCCTGCCGGATGGTTCA 59.010 61.111 5.05 0.00 39.01 3.18
420 421 1.299648 CTCCTGCCGGATGGTTCAA 59.700 57.895 5.05 0.00 39.01 2.69
421 422 0.107017 CTCCTGCCGGATGGTTCAAT 60.107 55.000 5.05 0.00 39.01 2.57
422 423 1.140852 CTCCTGCCGGATGGTTCAATA 59.859 52.381 5.05 0.00 39.01 1.90
423 424 1.134220 TCCTGCCGGATGGTTCAATAC 60.134 52.381 5.05 0.00 37.67 1.89
442 443 1.631898 ACGTAAAAGCACCCCAGGTAT 59.368 47.619 0.00 0.00 32.11 2.73
535 536 6.573434 TGCACTCGATGTAATGATTTAGTCT 58.427 36.000 0.00 0.00 0.00 3.24
651 653 1.599606 CCACGCTACAGGAGAGCACT 61.600 60.000 0.00 0.00 40.09 4.40
1828 2466 2.298610 TGCGTTTGTGGTTGGACAATA 58.701 42.857 0.00 0.00 35.77 1.90
2195 3109 4.729868 TGAGTAGACTGCAGGCATATCTA 58.270 43.478 24.55 14.30 0.00 1.98
2746 3759 5.859114 CCTCTCGTACATTATACTGCACATC 59.141 44.000 0.00 0.00 0.00 3.06
2867 3885 3.698040 ACAACAACTATATCCTCGGACGT 59.302 43.478 0.00 0.00 0.00 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.018226 CAGTGTAGCAGCAGTCCAGC 61.018 60.000 0.00 0.00 0.00 4.85
4 5 0.319728 ACAGTGTAGCAGCAGTCCAG 59.680 55.000 0.00 0.00 0.00 3.86
5 6 0.318441 GACAGTGTAGCAGCAGTCCA 59.682 55.000 0.00 0.00 0.00 4.02
6 7 0.605589 AGACAGTGTAGCAGCAGTCC 59.394 55.000 0.00 0.00 0.00 3.85
7 8 1.270826 TGAGACAGTGTAGCAGCAGTC 59.729 52.381 0.00 0.00 0.00 3.51
8 9 1.271934 CTGAGACAGTGTAGCAGCAGT 59.728 52.381 10.77 0.00 0.00 4.40
9 10 1.543358 TCTGAGACAGTGTAGCAGCAG 59.457 52.381 16.24 10.44 32.61 4.24
10 11 1.270826 GTCTGAGACAGTGTAGCAGCA 59.729 52.381 7.90 6.49 32.61 4.41
11 12 1.543802 AGTCTGAGACAGTGTAGCAGC 59.456 52.381 15.86 12.45 34.60 5.25
12 13 2.159585 CGAGTCTGAGACAGTGTAGCAG 60.160 54.545 15.86 15.33 34.60 4.24
13 14 1.807142 CGAGTCTGAGACAGTGTAGCA 59.193 52.381 15.86 0.00 34.60 3.49
14 15 1.131504 CCGAGTCTGAGACAGTGTAGC 59.868 57.143 15.86 0.00 34.60 3.58
15 16 2.417239 GACCGAGTCTGAGACAGTGTAG 59.583 54.545 15.86 0.00 34.60 2.74
16 17 2.424557 GACCGAGTCTGAGACAGTGTA 58.575 52.381 15.86 0.00 34.60 2.90
17 18 1.240256 GACCGAGTCTGAGACAGTGT 58.760 55.000 15.86 7.92 34.60 3.55
18 19 0.523966 GGACCGAGTCTGAGACAGTG 59.476 60.000 15.86 4.64 34.60 3.66
19 20 0.110678 TGGACCGAGTCTGAGACAGT 59.889 55.000 15.86 8.92 34.60 3.55
20 21 1.468985 ATGGACCGAGTCTGAGACAG 58.531 55.000 15.86 8.17 34.60 3.51
21 22 1.546029 CAATGGACCGAGTCTGAGACA 59.454 52.381 15.86 0.00 34.60 3.41
22 23 1.737363 GCAATGGACCGAGTCTGAGAC 60.737 57.143 3.98 3.98 32.47 3.36
23 24 0.532573 GCAATGGACCGAGTCTGAGA 59.467 55.000 4.41 0.00 32.47 3.27
24 25 0.247460 TGCAATGGACCGAGTCTGAG 59.753 55.000 4.41 0.00 32.47 3.35
25 26 0.247460 CTGCAATGGACCGAGTCTGA 59.753 55.000 4.41 0.00 32.47 3.27
26 27 1.364626 GCTGCAATGGACCGAGTCTG 61.365 60.000 0.00 0.00 32.47 3.51
27 28 1.078848 GCTGCAATGGACCGAGTCT 60.079 57.895 0.00 0.00 32.47 3.24
28 29 2.109126 GGCTGCAATGGACCGAGTC 61.109 63.158 0.50 0.00 0.00 3.36
29 30 2.045926 GGCTGCAATGGACCGAGT 60.046 61.111 0.50 0.00 0.00 4.18
30 31 1.243342 TTTGGCTGCAATGGACCGAG 61.243 55.000 0.50 0.00 0.00 4.63
31 32 0.825425 TTTTGGCTGCAATGGACCGA 60.825 50.000 0.50 0.00 0.00 4.69
32 33 0.033228 TTTTTGGCTGCAATGGACCG 59.967 50.000 0.50 0.00 0.00 4.79
33 34 1.511850 GTTTTTGGCTGCAATGGACC 58.488 50.000 0.50 0.00 0.00 4.46
34 35 1.511850 GGTTTTTGGCTGCAATGGAC 58.488 50.000 0.50 0.00 0.00 4.02
35 36 0.033228 CGGTTTTTGGCTGCAATGGA 59.967 50.000 0.50 0.00 0.00 3.41
36 37 0.249826 ACGGTTTTTGGCTGCAATGG 60.250 50.000 0.50 0.00 0.00 3.16
37 38 1.139163 GACGGTTTTTGGCTGCAATG 58.861 50.000 0.50 0.00 0.00 2.82
38 39 1.000274 GAGACGGTTTTTGGCTGCAAT 60.000 47.619 0.50 0.00 0.00 3.56
39 40 0.383949 GAGACGGTTTTTGGCTGCAA 59.616 50.000 0.50 0.00 0.00 4.08
40 41 1.781025 CGAGACGGTTTTTGGCTGCA 61.781 55.000 0.50 0.00 0.00 4.41
41 42 1.082104 CGAGACGGTTTTTGGCTGC 60.082 57.895 0.00 0.00 0.00 5.25
42 43 0.234884 GACGAGACGGTTTTTGGCTG 59.765 55.000 0.00 0.00 0.00 4.85
43 44 0.106149 AGACGAGACGGTTTTTGGCT 59.894 50.000 0.00 0.00 0.00 4.75
44 45 1.787012 TAGACGAGACGGTTTTTGGC 58.213 50.000 0.00 0.00 0.00 4.52
45 46 5.166398 AGTATTAGACGAGACGGTTTTTGG 58.834 41.667 0.00 0.00 0.00 3.28
46 47 7.025963 AGTAGTATTAGACGAGACGGTTTTTG 58.974 38.462 0.00 0.00 0.00 2.44
47 48 7.150783 AGTAGTATTAGACGAGACGGTTTTT 57.849 36.000 0.00 0.00 0.00 1.94
48 49 6.749923 AGTAGTATTAGACGAGACGGTTTT 57.250 37.500 0.00 0.00 0.00 2.43
49 50 7.044798 AGTAGTAGTATTAGACGAGACGGTTT 58.955 38.462 0.00 0.00 0.00 3.27
50 51 6.578023 AGTAGTAGTATTAGACGAGACGGTT 58.422 40.000 0.00 0.00 0.00 4.44
51 52 6.155475 AGTAGTAGTATTAGACGAGACGGT 57.845 41.667 0.00 0.00 0.00 4.83
52 53 5.633182 GGAGTAGTAGTATTAGACGAGACGG 59.367 48.000 0.00 0.00 0.00 4.79
53 54 5.633182 GGGAGTAGTAGTATTAGACGAGACG 59.367 48.000 0.00 0.00 0.00 4.18
54 55 6.758254 AGGGAGTAGTAGTATTAGACGAGAC 58.242 44.000 0.00 0.00 0.00 3.36
55 56 6.992664 AGGGAGTAGTAGTATTAGACGAGA 57.007 41.667 0.00 0.00 0.00 4.04
56 57 8.987890 GTAAAGGGAGTAGTAGTATTAGACGAG 58.012 40.741 0.00 0.00 0.00 4.18
57 58 7.934120 GGTAAAGGGAGTAGTAGTATTAGACGA 59.066 40.741 0.00 0.00 0.00 4.20
58 59 7.716998 TGGTAAAGGGAGTAGTAGTATTAGACG 59.283 40.741 0.00 0.00 0.00 4.18
59 60 8.845227 GTGGTAAAGGGAGTAGTAGTATTAGAC 58.155 40.741 0.00 0.00 0.00 2.59
60 61 8.560039 TGTGGTAAAGGGAGTAGTAGTATTAGA 58.440 37.037 0.00 0.00 0.00 2.10
61 62 8.757982 TGTGGTAAAGGGAGTAGTAGTATTAG 57.242 38.462 0.00 0.00 0.00 1.73
62 63 9.193806 CTTGTGGTAAAGGGAGTAGTAGTATTA 57.806 37.037 0.00 0.00 0.00 0.98
63 64 7.677319 ACTTGTGGTAAAGGGAGTAGTAGTATT 59.323 37.037 0.00 0.00 0.00 1.89
64 65 7.187676 ACTTGTGGTAAAGGGAGTAGTAGTAT 58.812 38.462 0.00 0.00 0.00 2.12
65 66 6.555711 ACTTGTGGTAAAGGGAGTAGTAGTA 58.444 40.000 0.00 0.00 0.00 1.82
66 67 5.400870 ACTTGTGGTAAAGGGAGTAGTAGT 58.599 41.667 0.00 0.00 0.00 2.73
67 68 5.997384 ACTTGTGGTAAAGGGAGTAGTAG 57.003 43.478 0.00 0.00 0.00 2.57
68 69 9.719433 ATATTACTTGTGGTAAAGGGAGTAGTA 57.281 33.333 0.00 0.00 42.74 1.82
69 70 6.947376 ATTACTTGTGGTAAAGGGAGTAGT 57.053 37.500 0.00 0.00 42.74 2.73
70 71 7.931948 CCATATTACTTGTGGTAAAGGGAGTAG 59.068 40.741 0.00 0.00 42.74 2.57
71 72 7.624478 TCCATATTACTTGTGGTAAAGGGAGTA 59.376 37.037 0.00 0.00 42.74 2.59
72 73 6.445786 TCCATATTACTTGTGGTAAAGGGAGT 59.554 38.462 0.00 0.00 42.74 3.85
73 74 6.895782 TCCATATTACTTGTGGTAAAGGGAG 58.104 40.000 0.00 0.00 42.74 4.30
74 75 6.894735 TCCATATTACTTGTGGTAAAGGGA 57.105 37.500 0.00 0.00 42.74 4.20
75 76 6.426937 CGATCCATATTACTTGTGGTAAAGGG 59.573 42.308 0.00 0.00 42.74 3.95
76 77 6.426937 CCGATCCATATTACTTGTGGTAAAGG 59.573 42.308 0.00 0.00 42.74 3.11
77 78 7.214381 TCCGATCCATATTACTTGTGGTAAAG 58.786 38.462 0.00 0.00 42.74 1.85
78 79 7.127012 TCCGATCCATATTACTTGTGGTAAA 57.873 36.000 0.00 0.00 42.74 2.01
79 80 6.239487 CCTCCGATCCATATTACTTGTGGTAA 60.239 42.308 0.00 0.00 43.49 2.85
80 81 5.245301 CCTCCGATCCATATTACTTGTGGTA 59.755 44.000 0.00 0.00 34.61 3.25
81 82 4.040461 CCTCCGATCCATATTACTTGTGGT 59.960 45.833 0.00 0.00 34.61 4.16
82 83 4.563580 CCCTCCGATCCATATTACTTGTGG 60.564 50.000 0.00 0.00 0.00 4.17
83 84 4.283467 TCCCTCCGATCCATATTACTTGTG 59.717 45.833 0.00 0.00 0.00 3.33
84 85 4.489737 TCCCTCCGATCCATATTACTTGT 58.510 43.478 0.00 0.00 0.00 3.16
85 86 5.683876 ATCCCTCCGATCCATATTACTTG 57.316 43.478 0.00 0.00 0.00 3.16
86 87 6.127026 GCTAATCCCTCCGATCCATATTACTT 60.127 42.308 0.00 0.00 0.00 2.24
87 88 5.364157 GCTAATCCCTCCGATCCATATTACT 59.636 44.000 0.00 0.00 0.00 2.24
88 89 5.128827 TGCTAATCCCTCCGATCCATATTAC 59.871 44.000 0.00 0.00 0.00 1.89
89 90 5.277250 TGCTAATCCCTCCGATCCATATTA 58.723 41.667 0.00 0.00 0.00 0.98
90 91 4.104086 TGCTAATCCCTCCGATCCATATT 58.896 43.478 0.00 0.00 0.00 1.28
91 92 3.724478 TGCTAATCCCTCCGATCCATAT 58.276 45.455 0.00 0.00 0.00 1.78
92 93 3.184382 TGCTAATCCCTCCGATCCATA 57.816 47.619 0.00 0.00 0.00 2.74
93 94 2.030027 TGCTAATCCCTCCGATCCAT 57.970 50.000 0.00 0.00 0.00 3.41
94 95 1.694150 CTTGCTAATCCCTCCGATCCA 59.306 52.381 0.00 0.00 0.00 3.41
95 96 1.609320 GCTTGCTAATCCCTCCGATCC 60.609 57.143 0.00 0.00 0.00 3.36
96 97 1.346068 AGCTTGCTAATCCCTCCGATC 59.654 52.381 0.00 0.00 0.00 3.69
97 98 1.071385 CAGCTTGCTAATCCCTCCGAT 59.929 52.381 0.00 0.00 0.00 4.18
98 99 0.465705 CAGCTTGCTAATCCCTCCGA 59.534 55.000 0.00 0.00 0.00 4.55
99 100 1.162800 GCAGCTTGCTAATCCCTCCG 61.163 60.000 0.00 0.00 40.96 4.63
100 101 2.712984 GCAGCTTGCTAATCCCTCC 58.287 57.895 0.00 0.00 40.96 4.30
114 115 2.930040 TCGTCAACAAGCTAATAGCAGC 59.070 45.455 15.28 0.00 45.56 5.25
115 116 3.000674 CGTCGTCAACAAGCTAATAGCAG 60.001 47.826 15.28 8.94 45.56 4.24
116 117 2.921121 CGTCGTCAACAAGCTAATAGCA 59.079 45.455 15.28 0.00 45.56 3.49
117 118 3.176708 TCGTCGTCAACAAGCTAATAGC 58.823 45.455 3.66 3.66 42.84 2.97
118 119 3.240861 GCTCGTCGTCAACAAGCTAATAG 59.759 47.826 0.00 0.00 0.00 1.73
119 120 3.119602 AGCTCGTCGTCAACAAGCTAATA 60.120 43.478 2.33 0.00 0.00 0.98
120 121 1.993370 GCTCGTCGTCAACAAGCTAAT 59.007 47.619 0.00 0.00 0.00 1.73
121 122 1.000607 AGCTCGTCGTCAACAAGCTAA 60.001 47.619 2.33 0.00 0.00 3.09
122 123 0.596577 AGCTCGTCGTCAACAAGCTA 59.403 50.000 2.33 0.00 0.00 3.32
123 124 0.664767 GAGCTCGTCGTCAACAAGCT 60.665 55.000 0.00 3.76 0.00 3.74
124 125 1.618640 GGAGCTCGTCGTCAACAAGC 61.619 60.000 7.83 0.00 0.00 4.01
125 126 0.318699 TGGAGCTCGTCGTCAACAAG 60.319 55.000 7.83 0.00 0.00 3.16
126 127 0.318699 CTGGAGCTCGTCGTCAACAA 60.319 55.000 7.83 0.00 0.00 2.83
127 128 1.285950 CTGGAGCTCGTCGTCAACA 59.714 57.895 7.83 0.00 0.00 3.33
128 129 1.004277 CACTGGAGCTCGTCGTCAAC 61.004 60.000 7.83 0.00 0.00 3.18
129 130 1.170290 TCACTGGAGCTCGTCGTCAA 61.170 55.000 7.83 0.00 0.00 3.18
130 131 1.578206 CTCACTGGAGCTCGTCGTCA 61.578 60.000 7.83 0.00 33.67 4.35
131 132 1.135731 CTCACTGGAGCTCGTCGTC 59.864 63.158 7.83 0.00 33.67 4.20
132 133 3.268986 CTCACTGGAGCTCGTCGT 58.731 61.111 7.83 1.32 33.67 4.34
151 152 3.655777 TGTATGGAAAGGGCCCTAATAGG 59.344 47.826 28.96 0.00 34.30 2.57
152 153 4.807643 GCTGTATGGAAAGGGCCCTAATAG 60.808 50.000 28.96 15.41 0.00 1.73
153 154 3.073946 GCTGTATGGAAAGGGCCCTAATA 59.926 47.826 28.96 17.56 0.00 0.98
154 155 2.158460 GCTGTATGGAAAGGGCCCTAAT 60.158 50.000 28.96 18.39 0.00 1.73
155 156 1.214424 GCTGTATGGAAAGGGCCCTAA 59.786 52.381 28.96 12.14 0.00 2.69
156 157 0.843984 GCTGTATGGAAAGGGCCCTA 59.156 55.000 28.96 10.31 0.00 3.53
157 158 1.615262 GCTGTATGGAAAGGGCCCT 59.385 57.895 22.28 22.28 0.00 5.19
158 159 1.455773 GGCTGTATGGAAAGGGCCC 60.456 63.158 16.46 16.46 34.19 5.80
159 160 1.823899 CGGCTGTATGGAAAGGGCC 60.824 63.158 0.00 0.00 36.60 5.80
160 161 1.823899 CCGGCTGTATGGAAAGGGC 60.824 63.158 0.00 0.00 0.00 5.19
161 162 1.823899 GCCGGCTGTATGGAAAGGG 60.824 63.158 22.15 0.00 0.00 3.95
162 163 0.679640 TTGCCGGCTGTATGGAAAGG 60.680 55.000 29.70 0.00 0.00 3.11
163 164 1.392589 ATTGCCGGCTGTATGGAAAG 58.607 50.000 29.70 0.00 0.00 2.62
164 165 2.719531 TATTGCCGGCTGTATGGAAA 57.280 45.000 29.70 11.34 0.00 3.13
165 166 2.949177 ATATTGCCGGCTGTATGGAA 57.051 45.000 29.70 12.18 0.00 3.53
166 167 5.887214 ATATATATTGCCGGCTGTATGGA 57.113 39.130 29.70 16.28 0.00 3.41
167 168 6.868864 GTCTATATATATTGCCGGCTGTATGG 59.131 42.308 29.70 16.25 0.00 2.74
168 169 6.868864 GGTCTATATATATTGCCGGCTGTATG 59.131 42.308 29.70 12.52 0.00 2.39
169 170 6.553476 TGGTCTATATATATTGCCGGCTGTAT 59.447 38.462 29.70 24.93 0.00 2.29
170 171 5.894964 TGGTCTATATATATTGCCGGCTGTA 59.105 40.000 29.70 20.05 0.00 2.74
171 172 4.714802 TGGTCTATATATATTGCCGGCTGT 59.285 41.667 29.70 18.41 0.00 4.40
172 173 5.276461 TGGTCTATATATATTGCCGGCTG 57.724 43.478 29.70 4.80 0.00 4.85
173 174 5.950544 TTGGTCTATATATATTGCCGGCT 57.049 39.130 29.70 11.31 0.00 5.52
174 175 5.007724 GCTTTGGTCTATATATATTGCCGGC 59.992 44.000 22.73 22.73 0.00 6.13
175 176 6.112734 TGCTTTGGTCTATATATATTGCCGG 58.887 40.000 0.00 0.00 0.00 6.13
176 177 7.792374 ATGCTTTGGTCTATATATATTGCCG 57.208 36.000 0.00 0.00 0.00 5.69
177 178 9.177608 TCAATGCTTTGGTCTATATATATTGCC 57.822 33.333 11.99 5.79 33.44 4.52
183 184 9.646522 AAAACCTCAATGCTTTGGTCTATATAT 57.353 29.630 11.99 0.00 33.44 0.86
184 185 9.120538 GAAAACCTCAATGCTTTGGTCTATATA 57.879 33.333 11.99 0.00 33.44 0.86
185 186 7.615365 TGAAAACCTCAATGCTTTGGTCTATAT 59.385 33.333 11.99 0.00 33.44 0.86
186 187 6.945435 TGAAAACCTCAATGCTTTGGTCTATA 59.055 34.615 11.99 0.00 33.44 1.31
187 188 5.774690 TGAAAACCTCAATGCTTTGGTCTAT 59.225 36.000 11.99 0.00 33.44 1.98
188 189 5.136828 TGAAAACCTCAATGCTTTGGTCTA 58.863 37.500 11.99 0.00 33.44 2.59
189 190 3.960102 TGAAAACCTCAATGCTTTGGTCT 59.040 39.130 11.99 0.00 33.44 3.85
190 191 4.301628 CTGAAAACCTCAATGCTTTGGTC 58.698 43.478 11.99 2.61 32.17 4.02
191 192 3.070015 CCTGAAAACCTCAATGCTTTGGT 59.930 43.478 11.99 0.91 32.17 3.67
192 193 3.321682 TCCTGAAAACCTCAATGCTTTGG 59.678 43.478 11.99 0.29 32.17 3.28
193 194 4.279169 TCTCCTGAAAACCTCAATGCTTTG 59.721 41.667 5.99 5.99 32.17 2.77
194 195 4.473444 TCTCCTGAAAACCTCAATGCTTT 58.527 39.130 0.00 0.00 32.17 3.51
195 196 4.104383 TCTCCTGAAAACCTCAATGCTT 57.896 40.909 0.00 0.00 32.17 3.91
196 197 3.795688 TCTCCTGAAAACCTCAATGCT 57.204 42.857 0.00 0.00 32.17 3.79
197 198 5.431765 TCTATCTCCTGAAAACCTCAATGC 58.568 41.667 0.00 0.00 32.17 3.56
198 199 6.882656 TCTCTATCTCCTGAAAACCTCAATG 58.117 40.000 0.00 0.00 32.17 2.82
199 200 6.900186 TCTCTCTATCTCCTGAAAACCTCAAT 59.100 38.462 0.00 0.00 32.17 2.57
200 201 6.256819 TCTCTCTATCTCCTGAAAACCTCAA 58.743 40.000 0.00 0.00 32.17 3.02
201 202 5.832221 TCTCTCTATCTCCTGAAAACCTCA 58.168 41.667 0.00 0.00 0.00 3.86
202 203 6.039382 GTCTCTCTCTATCTCCTGAAAACCTC 59.961 46.154 0.00 0.00 0.00 3.85
203 204 5.891551 GTCTCTCTCTATCTCCTGAAAACCT 59.108 44.000 0.00 0.00 0.00 3.50
204 205 5.220970 CGTCTCTCTCTATCTCCTGAAAACC 60.221 48.000 0.00 0.00 0.00 3.27
205 206 5.220970 CCGTCTCTCTCTATCTCCTGAAAAC 60.221 48.000 0.00 0.00 0.00 2.43
206 207 4.884744 CCGTCTCTCTCTATCTCCTGAAAA 59.115 45.833 0.00 0.00 0.00 2.29
207 208 4.164413 TCCGTCTCTCTCTATCTCCTGAAA 59.836 45.833 0.00 0.00 0.00 2.69
208 209 3.712218 TCCGTCTCTCTCTATCTCCTGAA 59.288 47.826 0.00 0.00 0.00 3.02
209 210 3.310193 TCCGTCTCTCTCTATCTCCTGA 58.690 50.000 0.00 0.00 0.00 3.86
210 211 3.557054 CCTCCGTCTCTCTCTATCTCCTG 60.557 56.522 0.00 0.00 0.00 3.86
211 212 2.637872 CCTCCGTCTCTCTCTATCTCCT 59.362 54.545 0.00 0.00 0.00 3.69
212 213 2.370849 ACCTCCGTCTCTCTCTATCTCC 59.629 54.545 0.00 0.00 0.00 3.71
213 214 3.070446 TGACCTCCGTCTCTCTCTATCTC 59.930 52.174 0.00 0.00 39.94 2.75
214 215 3.042682 TGACCTCCGTCTCTCTCTATCT 58.957 50.000 0.00 0.00 39.94 1.98
215 216 3.478857 TGACCTCCGTCTCTCTCTATC 57.521 52.381 0.00 0.00 39.94 2.08
216 217 4.141287 CAATGACCTCCGTCTCTCTCTAT 58.859 47.826 0.00 0.00 39.94 1.98
217 218 3.546724 CAATGACCTCCGTCTCTCTCTA 58.453 50.000 0.00 0.00 39.94 2.43
218 219 2.374184 CAATGACCTCCGTCTCTCTCT 58.626 52.381 0.00 0.00 39.94 3.10
219 220 1.407258 CCAATGACCTCCGTCTCTCTC 59.593 57.143 0.00 0.00 39.94 3.20
220 221 1.006043 TCCAATGACCTCCGTCTCTCT 59.994 52.381 0.00 0.00 39.94 3.10
221 222 1.135333 GTCCAATGACCTCCGTCTCTC 59.865 57.143 0.00 0.00 39.94 3.20
222 223 1.187087 GTCCAATGACCTCCGTCTCT 58.813 55.000 0.00 0.00 39.94 3.10
223 224 1.134965 CAGTCCAATGACCTCCGTCTC 60.135 57.143 0.00 0.00 42.81 3.36
224 225 0.898320 CAGTCCAATGACCTCCGTCT 59.102 55.000 0.00 0.00 42.81 4.18
225 226 0.108138 CCAGTCCAATGACCTCCGTC 60.108 60.000 0.00 0.00 42.81 4.79
226 227 0.544357 TCCAGTCCAATGACCTCCGT 60.544 55.000 0.00 0.00 42.81 4.69
227 228 0.176680 CTCCAGTCCAATGACCTCCG 59.823 60.000 0.00 0.00 42.81 4.63
228 229 1.280457 ACTCCAGTCCAATGACCTCC 58.720 55.000 0.00 0.00 42.81 4.30
229 230 4.443598 GGAATACTCCAGTCCAATGACCTC 60.444 50.000 0.00 0.00 41.27 3.85
230 231 3.456277 GGAATACTCCAGTCCAATGACCT 59.544 47.826 0.00 0.00 41.27 3.85
231 232 3.741388 CGGAATACTCCAGTCCAATGACC 60.741 52.174 0.00 0.00 41.74 4.02
232 233 3.458189 CGGAATACTCCAGTCCAATGAC 58.542 50.000 0.00 0.00 41.74 3.06
233 234 2.158957 GCGGAATACTCCAGTCCAATGA 60.159 50.000 0.00 0.00 41.74 2.57
234 235 2.158900 AGCGGAATACTCCAGTCCAATG 60.159 50.000 0.00 0.00 41.74 2.82
235 236 2.119495 AGCGGAATACTCCAGTCCAAT 58.881 47.619 0.00 0.00 41.74 3.16
236 237 1.568504 AGCGGAATACTCCAGTCCAA 58.431 50.000 0.00 0.00 41.74 3.53
237 238 1.480954 GAAGCGGAATACTCCAGTCCA 59.519 52.381 0.00 0.00 41.74 4.02
238 239 1.757699 AGAAGCGGAATACTCCAGTCC 59.242 52.381 0.00 0.00 42.58 3.85
239 240 3.528597 AAGAAGCGGAATACTCCAGTC 57.471 47.619 0.00 0.00 42.58 3.51
240 241 3.983044 AAAGAAGCGGAATACTCCAGT 57.017 42.857 0.00 0.00 42.58 4.00
241 242 3.375299 CCAAAAGAAGCGGAATACTCCAG 59.625 47.826 0.00 0.00 42.58 3.86
242 243 3.343617 CCAAAAGAAGCGGAATACTCCA 58.656 45.455 0.00 0.00 42.58 3.86
243 244 2.683362 CCCAAAAGAAGCGGAATACTCC 59.317 50.000 0.00 0.00 38.52 3.85
244 245 2.683362 CCCCAAAAGAAGCGGAATACTC 59.317 50.000 0.00 0.00 0.00 2.59
245 246 2.723273 CCCCAAAAGAAGCGGAATACT 58.277 47.619 0.00 0.00 0.00 2.12
246 247 1.134367 GCCCCAAAAGAAGCGGAATAC 59.866 52.381 0.00 0.00 0.00 1.89
247 248 1.272203 TGCCCCAAAAGAAGCGGAATA 60.272 47.619 0.00 0.00 0.00 1.75
248 249 0.541764 TGCCCCAAAAGAAGCGGAAT 60.542 50.000 0.00 0.00 0.00 3.01
249 250 1.152652 TGCCCCAAAAGAAGCGGAA 60.153 52.632 0.00 0.00 0.00 4.30
250 251 1.603455 CTGCCCCAAAAGAAGCGGA 60.603 57.895 0.00 0.00 33.29 5.54
251 252 1.178534 TTCTGCCCCAAAAGAAGCGG 61.179 55.000 0.00 0.00 0.00 5.52
252 253 0.242017 CTTCTGCCCCAAAAGAAGCG 59.758 55.000 0.00 0.00 42.04 4.68
253 254 1.620822 TCTTCTGCCCCAAAAGAAGC 58.379 50.000 7.41 0.00 45.94 3.86
255 256 3.074390 TCTGATCTTCTGCCCCAAAAGAA 59.926 43.478 0.00 0.00 33.10 2.52
256 257 2.644299 TCTGATCTTCTGCCCCAAAAGA 59.356 45.455 0.00 0.00 33.83 2.52
257 258 3.015327 CTCTGATCTTCTGCCCCAAAAG 58.985 50.000 0.00 0.00 0.00 2.27
258 259 2.291153 CCTCTGATCTTCTGCCCCAAAA 60.291 50.000 0.00 0.00 0.00 2.44
259 260 1.283029 CCTCTGATCTTCTGCCCCAAA 59.717 52.381 0.00 0.00 0.00 3.28
260 261 0.914644 CCTCTGATCTTCTGCCCCAA 59.085 55.000 0.00 0.00 0.00 4.12
261 262 0.984961 CCCTCTGATCTTCTGCCCCA 60.985 60.000 0.00 0.00 0.00 4.96
262 263 0.985490 ACCCTCTGATCTTCTGCCCC 60.985 60.000 0.00 0.00 0.00 5.80
263 264 0.467804 GACCCTCTGATCTTCTGCCC 59.532 60.000 0.00 0.00 0.00 5.36
264 265 0.103937 CGACCCTCTGATCTTCTGCC 59.896 60.000 0.00 0.00 0.00 4.85
265 266 0.103937 CCGACCCTCTGATCTTCTGC 59.896 60.000 0.00 0.00 0.00 4.26
266 267 1.135915 CACCGACCCTCTGATCTTCTG 59.864 57.143 0.00 0.00 0.00 3.02
267 268 1.479709 CACCGACCCTCTGATCTTCT 58.520 55.000 0.00 0.00 0.00 2.85
268 269 0.179097 GCACCGACCCTCTGATCTTC 60.179 60.000 0.00 0.00 0.00 2.87
269 270 1.901085 GCACCGACCCTCTGATCTT 59.099 57.895 0.00 0.00 0.00 2.40
270 271 2.418910 CGCACCGACCCTCTGATCT 61.419 63.158 0.00 0.00 0.00 2.75
271 272 2.105128 CGCACCGACCCTCTGATC 59.895 66.667 0.00 0.00 0.00 2.92
272 273 3.461773 CCGCACCGACCCTCTGAT 61.462 66.667 0.00 0.00 0.00 2.90
273 274 3.957435 ATCCGCACCGACCCTCTGA 62.957 63.158 0.00 0.00 0.00 3.27
274 275 1.672854 TAATCCGCACCGACCCTCTG 61.673 60.000 0.00 0.00 0.00 3.35
275 276 0.759436 ATAATCCGCACCGACCCTCT 60.759 55.000 0.00 0.00 0.00 3.69
276 277 0.963962 TATAATCCGCACCGACCCTC 59.036 55.000 0.00 0.00 0.00 4.30
277 278 1.640917 ATATAATCCGCACCGACCCT 58.359 50.000 0.00 0.00 0.00 4.34
278 279 3.814005 ATATATAATCCGCACCGACCC 57.186 47.619 0.00 0.00 0.00 4.46
279 280 4.201950 ACGTATATATAATCCGCACCGACC 60.202 45.833 0.00 0.00 0.00 4.79
280 281 4.913376 ACGTATATATAATCCGCACCGAC 58.087 43.478 0.00 0.00 0.00 4.79
281 282 5.237127 CCTACGTATATATAATCCGCACCGA 59.763 44.000 0.00 0.00 0.00 4.69
282 283 5.008019 ACCTACGTATATATAATCCGCACCG 59.992 44.000 0.00 0.00 0.00 4.94
283 284 6.382869 ACCTACGTATATATAATCCGCACC 57.617 41.667 0.00 0.00 0.00 5.01
284 285 8.147642 ACTACCTACGTATATATAATCCGCAC 57.852 38.462 0.00 0.00 0.00 5.34
285 286 9.481340 CTACTACCTACGTATATATAATCCGCA 57.519 37.037 0.00 0.00 0.00 5.69
286 287 9.698309 TCTACTACCTACGTATATATAATCCGC 57.302 37.037 0.00 0.00 0.00 5.54
292 293 9.148879 GGACCCTCTACTACCTACGTATATATA 57.851 40.741 0.00 0.00 0.00 0.86
293 294 7.848875 AGGACCCTCTACTACCTACGTATATAT 59.151 40.741 0.00 0.00 0.00 0.86
294 295 7.192628 AGGACCCTCTACTACCTACGTATATA 58.807 42.308 0.00 0.00 0.00 0.86
295 296 6.028780 AGGACCCTCTACTACCTACGTATAT 58.971 44.000 0.00 0.00 0.00 0.86
296 297 5.407049 AGGACCCTCTACTACCTACGTATA 58.593 45.833 0.00 0.00 0.00 1.47
297 298 4.238669 AGGACCCTCTACTACCTACGTAT 58.761 47.826 0.00 0.00 0.00 3.06
298 299 3.643792 GAGGACCCTCTACTACCTACGTA 59.356 52.174 8.76 0.00 39.80 3.57
299 300 2.437651 GAGGACCCTCTACTACCTACGT 59.562 54.545 8.76 0.00 39.80 3.57
300 301 2.437281 TGAGGACCCTCTACTACCTACG 59.563 54.545 16.25 0.00 43.12 3.51
301 302 3.715834 TCTGAGGACCCTCTACTACCTAC 59.284 52.174 16.25 0.00 43.12 3.18
302 303 3.715834 GTCTGAGGACCCTCTACTACCTA 59.284 52.174 16.25 0.00 43.12 3.08
303 304 2.510800 GTCTGAGGACCCTCTACTACCT 59.489 54.545 16.25 0.00 43.12 3.08
304 305 2.934887 GTCTGAGGACCCTCTACTACC 58.065 57.143 16.25 0.00 43.12 3.18
315 316 1.594310 GTGGCTGAGGTCTGAGGAC 59.406 63.158 0.00 0.00 41.43 3.85
316 317 1.610673 GGTGGCTGAGGTCTGAGGA 60.611 63.158 0.00 0.00 0.00 3.71
317 318 2.664081 GGGTGGCTGAGGTCTGAGG 61.664 68.421 0.00 0.00 0.00 3.86
318 319 2.664081 GGGGTGGCTGAGGTCTGAG 61.664 68.421 0.00 0.00 0.00 3.35
319 320 2.607750 GGGGTGGCTGAGGTCTGA 60.608 66.667 0.00 0.00 0.00 3.27
320 321 2.067932 TTTGGGGTGGCTGAGGTCTG 62.068 60.000 0.00 0.00 0.00 3.51
321 322 1.774217 TTTGGGGTGGCTGAGGTCT 60.774 57.895 0.00 0.00 0.00 3.85
322 323 1.303643 CTTTGGGGTGGCTGAGGTC 60.304 63.158 0.00 0.00 0.00 3.85
323 324 2.846532 CTTTGGGGTGGCTGAGGT 59.153 61.111 0.00 0.00 0.00 3.85
324 325 2.677875 GCTTTGGGGTGGCTGAGG 60.678 66.667 0.00 0.00 0.00 3.86
325 326 0.901580 ATTGCTTTGGGGTGGCTGAG 60.902 55.000 0.00 0.00 0.00 3.35
326 327 0.407528 TATTGCTTTGGGGTGGCTGA 59.592 50.000 0.00 0.00 0.00 4.26
327 328 0.819582 CTATTGCTTTGGGGTGGCTG 59.180 55.000 0.00 0.00 0.00 4.85
328 329 0.324645 CCTATTGCTTTGGGGTGGCT 60.325 55.000 0.00 0.00 0.00 4.75
329 330 1.960040 GCCTATTGCTTTGGGGTGGC 61.960 60.000 0.00 0.00 36.87 5.01
330 331 0.614415 TGCCTATTGCTTTGGGGTGG 60.614 55.000 0.00 0.00 42.00 4.61
331 332 0.819582 CTGCCTATTGCTTTGGGGTG 59.180 55.000 0.00 0.00 42.00 4.61
332 333 0.972471 GCTGCCTATTGCTTTGGGGT 60.972 55.000 0.00 0.00 42.00 4.95
333 334 1.818555 GCTGCCTATTGCTTTGGGG 59.181 57.895 0.00 0.00 42.00 4.96
334 335 1.434696 CGCTGCCTATTGCTTTGGG 59.565 57.895 0.00 0.00 42.00 4.12
335 336 1.434696 CCGCTGCCTATTGCTTTGG 59.565 57.895 0.00 0.00 42.00 3.28
336 337 1.226773 GCCGCTGCCTATTGCTTTG 60.227 57.895 0.00 0.00 42.00 2.77
337 338 1.379044 AGCCGCTGCCTATTGCTTT 60.379 52.632 0.00 0.00 42.00 3.51
338 339 2.117156 CAGCCGCTGCCTATTGCTT 61.117 57.895 7.61 0.00 42.00 3.91
339 340 2.515523 CAGCCGCTGCCTATTGCT 60.516 61.111 7.61 0.00 42.00 3.91
348 349 2.459442 GCTACTTCTGCAGCCGCTG 61.459 63.158 16.47 16.47 39.64 5.18
349 350 2.125350 GCTACTTCTGCAGCCGCT 60.125 61.111 9.47 0.00 39.64 5.52
350 351 2.434884 TGCTACTTCTGCAGCCGC 60.435 61.111 9.47 7.17 36.95 6.53
355 356 2.265739 CGCCCTGCTACTTCTGCA 59.734 61.111 0.00 0.00 38.81 4.41
356 357 2.512515 CCGCCCTGCTACTTCTGC 60.513 66.667 0.00 0.00 0.00 4.26
357 358 1.448540 CACCGCCCTGCTACTTCTG 60.449 63.158 0.00 0.00 0.00 3.02
358 359 2.982130 CACCGCCCTGCTACTTCT 59.018 61.111 0.00 0.00 0.00 2.85
359 360 2.820037 GCACCGCCCTGCTACTTC 60.820 66.667 0.00 0.00 34.06 3.01
360 361 4.760047 CGCACCGCCCTGCTACTT 62.760 66.667 0.00 0.00 34.77 2.24
362 363 4.137872 TACGCACCGCCCTGCTAC 62.138 66.667 0.00 0.00 34.77 3.58
363 364 3.833645 CTACGCACCGCCCTGCTA 61.834 66.667 0.00 0.00 34.77 3.49
369 370 3.652539 TTACCTGCTACGCACCGCC 62.653 63.158 0.00 0.00 33.79 6.13
370 371 2.125832 TTACCTGCTACGCACCGC 60.126 61.111 0.00 0.00 33.79 5.68
371 372 0.452987 TACTTACCTGCTACGCACCG 59.547 55.000 0.00 0.00 33.79 4.94
372 373 2.884894 ATACTTACCTGCTACGCACC 57.115 50.000 0.00 0.00 33.79 5.01
373 374 4.430908 AGAAATACTTACCTGCTACGCAC 58.569 43.478 0.00 0.00 33.79 5.34
374 375 4.679662 GAGAAATACTTACCTGCTACGCA 58.320 43.478 0.00 0.00 36.92 5.24
375 376 3.729716 CGAGAAATACTTACCTGCTACGC 59.270 47.826 0.00 0.00 0.00 4.42
376 377 4.918037 ACGAGAAATACTTACCTGCTACG 58.082 43.478 0.00 0.00 0.00 3.51
377 378 4.968788 CGACGAGAAATACTTACCTGCTAC 59.031 45.833 0.00 0.00 0.00 3.58
378 379 4.036027 CCGACGAGAAATACTTACCTGCTA 59.964 45.833 0.00 0.00 0.00 3.49
379 380 3.181489 CCGACGAGAAATACTTACCTGCT 60.181 47.826 0.00 0.00 0.00 4.24
380 381 3.114065 CCGACGAGAAATACTTACCTGC 58.886 50.000 0.00 0.00 0.00 4.85
381 382 3.114065 GCCGACGAGAAATACTTACCTG 58.886 50.000 0.00 0.00 0.00 4.00
382 383 3.022406 AGCCGACGAGAAATACTTACCT 58.978 45.455 0.00 0.00 0.00 3.08
383 384 3.370276 GAGCCGACGAGAAATACTTACC 58.630 50.000 0.00 0.00 0.00 2.85
384 385 3.066481 AGGAGCCGACGAGAAATACTTAC 59.934 47.826 0.00 0.00 0.00 2.34
385 386 3.066342 CAGGAGCCGACGAGAAATACTTA 59.934 47.826 0.00 0.00 0.00 2.24
386 387 2.100989 AGGAGCCGACGAGAAATACTT 58.899 47.619 0.00 0.00 0.00 2.24
387 388 1.405821 CAGGAGCCGACGAGAAATACT 59.594 52.381 0.00 0.00 0.00 2.12
388 389 1.841450 CAGGAGCCGACGAGAAATAC 58.159 55.000 0.00 0.00 0.00 1.89
389 390 0.102481 GCAGGAGCCGACGAGAAATA 59.898 55.000 0.00 0.00 33.58 1.40
390 391 1.153549 GCAGGAGCCGACGAGAAAT 60.154 57.895 0.00 0.00 33.58 2.17
391 392 2.261671 GCAGGAGCCGACGAGAAA 59.738 61.111 0.00 0.00 33.58 2.52
404 405 1.308998 GTATTGAACCATCCGGCAGG 58.691 55.000 10.11 10.11 39.46 4.85
405 406 0.937304 CGTATTGAACCATCCGGCAG 59.063 55.000 0.00 0.00 34.57 4.85
406 407 0.250793 ACGTATTGAACCATCCGGCA 59.749 50.000 0.00 0.00 34.57 5.69
407 408 2.228138 TACGTATTGAACCATCCGGC 57.772 50.000 0.00 0.00 34.57 6.13
408 409 4.495184 GCTTTTACGTATTGAACCATCCGG 60.495 45.833 0.00 0.00 38.77 5.14
409 410 4.093703 TGCTTTTACGTATTGAACCATCCG 59.906 41.667 0.00 0.00 0.00 4.18
410 411 5.329493 GTGCTTTTACGTATTGAACCATCC 58.671 41.667 0.00 0.00 0.00 3.51
411 412 5.329493 GGTGCTTTTACGTATTGAACCATC 58.671 41.667 12.54 0.00 0.00 3.51
412 413 4.157105 GGGTGCTTTTACGTATTGAACCAT 59.843 41.667 16.83 0.00 0.00 3.55
413 414 3.502979 GGGTGCTTTTACGTATTGAACCA 59.497 43.478 16.83 1.95 0.00 3.67
414 415 3.119743 GGGGTGCTTTTACGTATTGAACC 60.120 47.826 10.14 10.14 0.00 3.62
415 416 3.502979 TGGGGTGCTTTTACGTATTGAAC 59.497 43.478 0.00 0.00 0.00 3.18
416 417 3.752665 TGGGGTGCTTTTACGTATTGAA 58.247 40.909 0.00 0.00 0.00 2.69
417 418 3.340034 CTGGGGTGCTTTTACGTATTGA 58.660 45.455 0.00 0.00 0.00 2.57
418 419 2.422127 CCTGGGGTGCTTTTACGTATTG 59.578 50.000 0.00 0.00 0.00 1.90
419 420 2.040679 ACCTGGGGTGCTTTTACGTATT 59.959 45.455 0.00 0.00 32.98 1.89
420 421 1.631898 ACCTGGGGTGCTTTTACGTAT 59.368 47.619 0.00 0.00 32.98 3.06
421 422 1.058284 ACCTGGGGTGCTTTTACGTA 58.942 50.000 0.00 0.00 32.98 3.57
422 423 1.058284 TACCTGGGGTGCTTTTACGT 58.942 50.000 0.00 0.00 36.19 3.57
423 424 2.285977 GATACCTGGGGTGCTTTTACG 58.714 52.381 0.00 0.00 36.19 3.18
442 443 4.299586 TCACATTCCATGCAAGTTAGGA 57.700 40.909 0.00 0.00 0.00 2.94
535 536 1.878088 GTCACGCTATGATAGGTCGGA 59.122 52.381 1.11 0.00 40.28 4.55
651 653 5.187381 TGGATTTCAGGCAGAATTAATGCAA 59.813 36.000 14.99 3.64 45.68 4.08
764 986 9.903682 AAGTTAATGCTAATGCTAATGCTAATG 57.096 29.630 0.00 0.00 40.48 1.90
766 988 8.282592 CGAAGTTAATGCTAATGCTAATGCTAA 58.717 33.333 0.00 0.00 40.48 3.09
768 990 6.483307 TCGAAGTTAATGCTAATGCTAATGCT 59.517 34.615 0.00 0.00 40.48 3.79
769 991 6.658831 TCGAAGTTAATGCTAATGCTAATGC 58.341 36.000 0.00 0.00 40.48 3.56
1828 2466 1.559682 ACGGGTTACATCAGCAGGAAT 59.440 47.619 0.00 0.00 0.00 3.01
2746 3759 4.158025 ACTGGGACTTTGAGAGTACGTATG 59.842 45.833 0.00 0.00 40.41 2.39
2867 3885 1.361204 TCTCCCTGAAATCCACTGCA 58.639 50.000 0.00 0.00 0.00 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.