Multiple sequence alignment - TraesCS5A01G159100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G159100 chr5A 100.000 6656 0 0 1 6656 339735816 339742471 0.000000e+00 12292
1 TraesCS5A01G159100 chr5A 92.000 300 22 1 2059 2356 34330302 34330003 2.870000e-113 420
2 TraesCS5A01G159100 chr5A 86.260 393 33 6 1467 1839 34330764 34330373 2.230000e-109 407
3 TraesCS5A01G159100 chr5A 96.970 132 4 0 3123 3254 708160247 708160378 8.690000e-54 222
4 TraesCS5A01G159100 chr5A 83.817 241 25 11 3051 3288 339739864 339740093 4.040000e-52 217
5 TraesCS5A01G159100 chr5A 88.618 123 10 3 3041 3162 708160127 708160246 5.380000e-31 147
6 TraesCS5A01G159100 chr5D 96.033 3151 84 20 817 3951 255684474 255687599 0.000000e+00 5088
7 TraesCS5A01G159100 chr5D 93.607 2659 91 33 4033 6656 255687598 255690212 0.000000e+00 3895
8 TraesCS5A01G159100 chr5D 92.051 629 40 4 1 629 255661598 255662216 0.000000e+00 876
9 TraesCS5A01G159100 chr5D 84.689 418 42 15 4041 4441 170396628 170396216 1.340000e-106 398
10 TraesCS5A01G159100 chr5D 83.401 247 26 8 3051 3288 255687614 255687854 1.450000e-51 215
11 TraesCS5A01G159100 chr5D 90.370 135 9 1 625 755 255662471 255662605 2.470000e-39 174
12 TraesCS5A01G159100 chr5D 95.413 109 4 1 1947 2055 395728217 395728110 8.870000e-39 172
13 TraesCS5A01G159100 chr5B 95.954 1903 46 12 2057 3951 289563353 289565232 0.000000e+00 3059
14 TraesCS5A01G159100 chr5B 95.683 1807 42 11 4236 6026 289565513 289567299 0.000000e+00 2872
15 TraesCS5A01G159100 chr5B 95.521 1161 27 11 817 1962 289562203 289563353 0.000000e+00 1832
16 TraesCS5A01G159100 chr5B 94.737 456 20 3 6203 6656 289574078 289574531 0.000000e+00 706
17 TraesCS5A01G159100 chr5B 87.838 296 27 6 4041 4327 318136161 318135866 8.270000e-89 339
18 TraesCS5A01G159100 chr5B 95.146 206 4 2 4033 4237 289565231 289565431 2.990000e-83 320
19 TraesCS5A01G159100 chr5B 87.907 215 21 3 3041 3254 24639515 24639725 1.430000e-61 248
20 TraesCS5A01G159100 chr5B 94.624 93 5 0 6112 6204 289567525 289567617 1.930000e-30 145
21 TraesCS5A01G159100 chr4A 87.879 297 26 7 4041 4327 658780583 658780287 2.300000e-89 340
22 TraesCS5A01G159100 chr4A 87.879 297 26 7 4041 4327 658808209 658807913 2.300000e-89 340
23 TraesCS5A01G159100 chr4A 87.542 297 27 7 4041 4327 658763090 658762794 1.070000e-87 335
24 TraesCS5A01G159100 chr4A 87.302 189 19 4 3061 3247 658780565 658780380 1.880000e-50 211
25 TraesCS5A01G159100 chr4A 87.302 189 19 4 3061 3247 658808191 658808006 1.880000e-50 211
26 TraesCS5A01G159100 chr4A 86.772 189 20 4 3061 3247 658763072 658762887 8.750000e-49 206
27 TraesCS5A01G159100 chr4B 87.241 290 27 8 4041 4327 636711937 636711655 8.330000e-84 322
28 TraesCS5A01G159100 chr1B 86.207 290 29 9 4041 4327 55334442 55334723 3.020000e-78 303
29 TraesCS5A01G159100 chr1B 95.283 106 5 0 1954 2059 322747410 322747515 1.150000e-37 169
30 TraesCS5A01G159100 chr1B 94.393 107 6 0 1960 2066 30764621 30764727 1.480000e-36 165
31 TraesCS5A01G159100 chr7B 98.020 101 2 0 1955 2055 706811040 706811140 6.860000e-40 176
32 TraesCS5A01G159100 chr7B 93.750 96 4 2 3944 4037 119145227 119145322 6.960000e-30 143
33 TraesCS5A01G159100 chr7A 94.595 111 4 2 1951 2060 629780127 629780018 3.190000e-38 171
34 TraesCS5A01G159100 chr2D 95.238 105 5 0 1961 2065 206685554 206685658 4.130000e-37 167
35 TraesCS5A01G159100 chr2D 94.681 94 4 1 3944 4037 651527882 651527790 1.930000e-30 145
36 TraesCS5A01G159100 chr2D 92.079 101 6 2 3944 4042 422331647 422331547 2.500000e-29 141
37 TraesCS5A01G159100 chr7D 91.736 121 7 3 1942 2060 60439576 60439695 1.480000e-36 165
38 TraesCS5A01G159100 chr7D 94.737 95 5 0 3947 4041 602951566 602951472 1.500000e-31 148
39 TraesCS5A01G159100 chr4D 94.393 107 6 0 1961 2067 230489638 230489532 1.480000e-36 165
40 TraesCS5A01G159100 chr4D 98.824 85 1 0 3950 4034 485409435 485409351 1.160000e-32 152
41 TraesCS5A01G159100 chr3A 92.857 112 7 1 1961 2072 572598542 572598432 1.920000e-35 161
42 TraesCS5A01G159100 chr3A 93.939 99 6 0 3937 4035 747595939 747596037 4.160000e-32 150
43 TraesCS5A01G159100 chr3A 93.939 99 6 0 3937 4035 747598859 747598957 4.160000e-32 150
44 TraesCS5A01G159100 chr3A 94.737 95 4 1 3940 4034 710101195 710101288 5.380000e-31 147
45 TraesCS5A01G159100 chr6B 94.845 97 4 1 3947 4043 366431938 366432033 4.160000e-32 150


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G159100 chr5A 339735816 339742471 6655 False 6254.5 12292 91.908500 1 6656 2 chr5A.!!$F1 6655
1 TraesCS5A01G159100 chr5A 34330003 34330764 761 True 413.5 420 89.130000 1467 2356 2 chr5A.!!$R1 889
2 TraesCS5A01G159100 chr5D 255684474 255690212 5738 False 3066.0 5088 91.013667 817 6656 3 chr5D.!!$F2 5839
3 TraesCS5A01G159100 chr5D 255661598 255662605 1007 False 525.0 876 91.210500 1 755 2 chr5D.!!$F1 754
4 TraesCS5A01G159100 chr5B 289562203 289567617 5414 False 1645.6 3059 95.385600 817 6204 5 chr5B.!!$F3 5387

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
21 22 0.184451 ATGAGGCGATGGCAATCCTT 59.816 50.000 1.01 0.00 42.47 3.36 F
239 240 0.248289 CGTTAGTAGTGGGGGTGGTG 59.752 60.000 0.00 0.00 0.00 4.17 F
484 485 0.320421 AATGTCACCGACACTTCCCG 60.320 55.000 0.00 0.00 45.65 5.14 F
500 501 0.321210 CCCGCTTGTGTGTGTGGATA 60.321 55.000 0.00 0.00 36.02 2.59 F
554 555 0.384230 GGCGTGACAACATCGTTGTG 60.384 55.000 16.64 4.62 35.83 3.33 F
592 593 0.467804 GGAGTGGCAGGAGGATTCTC 59.532 60.000 0.00 0.00 39.25 2.87 F
2056 2203 0.404040 ATTTTGGAACGGAGGGAGCA 59.596 50.000 0.00 0.00 0.00 4.26 F
2306 2539 1.337387 GGACAGCCTATGGACGTAGAC 59.663 57.143 0.00 0.00 0.00 2.59 F
2448 2681 1.382629 CCCCACCAAAGAACGGGAT 59.617 57.895 0.00 0.00 41.62 3.85 F
2685 2919 2.080336 TTGGGAGTTCAGGCCAAGGG 62.080 60.000 5.01 0.00 0.00 3.95 F
3949 4191 2.291741 GCAGCGCAGGAGCTTTTATTAT 59.708 45.455 11.47 0.00 46.80 1.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1140 1149 1.450312 CTCCATGGCCTTGTCGACC 60.450 63.158 14.12 0.0 0.00 4.79 R
2038 2185 0.250727 CTGCTCCCTCCGTTCCAAAA 60.251 55.000 0.00 0.0 0.00 2.44 R
2047 2194 0.326264 ACATGACAACTGCTCCCTCC 59.674 55.000 0.00 0.0 0.00 4.30 R
2049 2196 0.767375 ACACATGACAACTGCTCCCT 59.233 50.000 0.00 0.0 0.00 4.20 R
2050 2197 0.877071 CACACATGACAACTGCTCCC 59.123 55.000 0.00 0.0 0.00 4.30 R
2448 2681 1.008449 CTGTCCCTCTCCCTTTCCCTA 59.992 57.143 0.00 0.0 0.00 3.53 R
4017 4259 0.338814 AACTACTCCCTCCGTCCCAT 59.661 55.000 0.00 0.0 0.00 4.00 R
4018 4260 0.613853 CAACTACTCCCTCCGTCCCA 60.614 60.000 0.00 0.0 0.00 4.37 R
4019 4261 0.614134 ACAACTACTCCCTCCGTCCC 60.614 60.000 0.00 0.0 0.00 4.46 R
4020 4262 1.264295 AACAACTACTCCCTCCGTCC 58.736 55.000 0.00 0.0 0.00 4.79 R
5779 6127 1.280421 AGGTAGAGCCAGAAAAGCAGG 59.720 52.381 0.00 0.0 40.61 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 0.536687 CATGAGGCGATGGCAATCCT 60.537 55.000 1.01 5.41 42.47 3.24
21 22 0.184451 ATGAGGCGATGGCAATCCTT 59.816 50.000 1.01 0.00 42.47 3.36
35 36 3.454812 GCAATCCTTCTAGGGTAGGTTGA 59.545 47.826 16.34 0.00 35.59 3.18
36 37 4.103311 GCAATCCTTCTAGGGTAGGTTGAT 59.897 45.833 16.34 0.00 35.59 2.57
49 50 5.243954 GGGTAGGTTGATTTTCTTGAGCTTT 59.756 40.000 0.00 0.00 0.00 3.51
89 90 0.550914 AAGGGAGGCATGCCGATAAA 59.449 50.000 30.50 0.00 42.98 1.40
96 97 4.320494 GGAGGCATGCCGATAAATACTTTG 60.320 45.833 30.50 0.00 41.95 2.77
125 126 1.000394 CCGACAAACAAATGGTTCCCC 60.000 52.381 0.00 0.00 39.29 4.81
146 147 3.243975 CCAGACATTTTCTTTGGCTTGCT 60.244 43.478 0.00 0.00 26.83 3.91
170 171 2.279741 GCGTGCTTATCAGATCCAACA 58.720 47.619 0.00 0.00 0.00 3.33
171 172 2.677836 GCGTGCTTATCAGATCCAACAA 59.322 45.455 0.00 0.00 0.00 2.83
232 233 3.257624 ACTTCACTTCCGTTAGTAGTGGG 59.742 47.826 0.00 0.00 39.71 4.61
237 238 0.615544 TCCGTTAGTAGTGGGGGTGG 60.616 60.000 0.00 0.00 0.00 4.61
238 239 0.906282 CCGTTAGTAGTGGGGGTGGT 60.906 60.000 0.00 0.00 0.00 4.16
239 240 0.248289 CGTTAGTAGTGGGGGTGGTG 59.752 60.000 0.00 0.00 0.00 4.17
251 252 2.011947 GGGGTGGTGCTAAATAACGTC 58.988 52.381 0.00 0.00 0.00 4.34
263 264 6.090898 TGCTAAATAACGTCTTCTTCTGCTTC 59.909 38.462 0.00 0.00 0.00 3.86
271 272 2.562738 TCTTCTTCTGCTTCGATGGTCA 59.437 45.455 0.00 0.00 0.00 4.02
289 290 3.788766 GTGCGCTGCCCGTTACAG 61.789 66.667 9.73 0.00 39.71 2.74
323 324 1.340889 TGGACATGTTTTGGAAGCAGC 59.659 47.619 0.00 0.00 0.00 5.25
339 340 0.504384 CAGCGAGAGTTTGTGTGTCG 59.496 55.000 0.00 0.00 34.02 4.35
348 349 3.898529 AGTTTGTGTGTCGTAGTCTAGC 58.101 45.455 0.00 0.00 0.00 3.42
356 357 1.002684 GTCGTAGTCTAGCCGATGGTG 60.003 57.143 0.00 0.00 32.68 4.17
390 391 6.695713 TCAATGACGTAGATTTGGTTATCTCG 59.304 38.462 0.00 0.00 36.34 4.04
406 407 4.847585 CGTCGACTCGAGCGGACG 62.848 72.222 31.15 31.15 36.23 4.79
408 409 3.485431 TCGACTCGAGCGGACGTC 61.485 66.667 22.70 7.13 34.70 4.34
410 411 2.163390 CGACTCGAGCGGACGTCTA 61.163 63.158 16.46 0.00 34.70 2.59
412 413 1.495878 GACTCGAGCGGACGTCTATA 58.504 55.000 16.46 0.00 34.70 1.31
413 414 2.067766 GACTCGAGCGGACGTCTATAT 58.932 52.381 16.46 0.00 34.70 0.86
414 415 1.799403 ACTCGAGCGGACGTCTATATG 59.201 52.381 16.46 3.50 34.70 1.78
415 416 1.799403 CTCGAGCGGACGTCTATATGT 59.201 52.381 16.46 0.00 34.70 2.29
416 417 1.529865 TCGAGCGGACGTCTATATGTG 59.470 52.381 16.46 0.22 34.70 3.21
417 418 1.529865 CGAGCGGACGTCTATATGTGA 59.470 52.381 16.46 0.00 0.00 3.58
418 419 2.662249 CGAGCGGACGTCTATATGTGAC 60.662 54.545 16.46 0.00 0.00 3.67
419 420 1.607628 AGCGGACGTCTATATGTGACC 59.392 52.381 16.46 0.00 0.00 4.02
420 421 1.662309 GCGGACGTCTATATGTGACCG 60.662 57.143 16.46 8.08 41.63 4.79
421 422 1.869132 CGGACGTCTATATGTGACCGA 59.131 52.381 16.46 0.00 41.30 4.69
422 423 2.096367 CGGACGTCTATATGTGACCGAG 60.096 54.545 16.46 0.00 41.30 4.63
423 424 2.350580 GGACGTCTATATGTGACCGAGC 60.351 54.545 16.46 0.00 0.00 5.03
424 425 1.607628 ACGTCTATATGTGACCGAGCC 59.392 52.381 5.48 0.00 0.00 4.70
425 426 1.607148 CGTCTATATGTGACCGAGCCA 59.393 52.381 5.48 0.00 0.00 4.75
426 427 2.604855 CGTCTATATGTGACCGAGCCAC 60.605 54.545 5.48 0.00 35.23 5.01
427 428 1.961394 TCTATATGTGACCGAGCCACC 59.039 52.381 0.00 0.00 33.80 4.61
428 429 1.686587 CTATATGTGACCGAGCCACCA 59.313 52.381 0.00 0.00 33.80 4.17
429 430 1.131638 ATATGTGACCGAGCCACCAT 58.868 50.000 0.00 0.00 33.80 3.55
430 431 0.464036 TATGTGACCGAGCCACCATC 59.536 55.000 0.00 0.00 33.80 3.51
431 432 1.267574 ATGTGACCGAGCCACCATCT 61.268 55.000 0.00 0.00 33.80 2.90
432 433 1.296715 GTGACCGAGCCACCATCTT 59.703 57.895 0.00 0.00 0.00 2.40
433 434 0.741221 GTGACCGAGCCACCATCTTC 60.741 60.000 0.00 0.00 0.00 2.87
434 435 0.904865 TGACCGAGCCACCATCTTCT 60.905 55.000 0.00 0.00 0.00 2.85
435 436 1.112113 GACCGAGCCACCATCTTCTA 58.888 55.000 0.00 0.00 0.00 2.10
436 437 0.824759 ACCGAGCCACCATCTTCTAC 59.175 55.000 0.00 0.00 0.00 2.59
437 438 1.115467 CCGAGCCACCATCTTCTACT 58.885 55.000 0.00 0.00 0.00 2.57
438 439 1.067821 CCGAGCCACCATCTTCTACTC 59.932 57.143 0.00 0.00 0.00 2.59
439 440 1.751351 CGAGCCACCATCTTCTACTCA 59.249 52.381 0.00 0.00 0.00 3.41
440 441 2.363680 CGAGCCACCATCTTCTACTCAT 59.636 50.000 0.00 0.00 0.00 2.90
441 442 3.551863 CGAGCCACCATCTTCTACTCATC 60.552 52.174 0.00 0.00 0.00 2.92
442 443 2.703007 AGCCACCATCTTCTACTCATCC 59.297 50.000 0.00 0.00 0.00 3.51
443 444 2.435805 GCCACCATCTTCTACTCATCCA 59.564 50.000 0.00 0.00 0.00 3.41
444 445 3.494048 GCCACCATCTTCTACTCATCCAG 60.494 52.174 0.00 0.00 0.00 3.86
445 446 3.708631 CCACCATCTTCTACTCATCCAGT 59.291 47.826 0.00 0.00 39.41 4.00
446 447 4.202202 CCACCATCTTCTACTCATCCAGTC 60.202 50.000 0.00 0.00 36.43 3.51
447 448 3.964031 ACCATCTTCTACTCATCCAGTCC 59.036 47.826 0.00 0.00 36.43 3.85
448 449 3.005261 CCATCTTCTACTCATCCAGTCCG 59.995 52.174 0.00 0.00 36.43 4.79
449 450 3.367646 TCTTCTACTCATCCAGTCCGT 57.632 47.619 0.00 0.00 36.43 4.69
450 451 3.017442 TCTTCTACTCATCCAGTCCGTG 58.983 50.000 0.00 0.00 36.43 4.94
460 461 3.159298 CAGTCCGTGGATCCTTTGG 57.841 57.895 14.23 11.90 0.00 3.28
461 462 0.392998 CAGTCCGTGGATCCTTTGGG 60.393 60.000 14.23 8.80 0.00 4.12
462 463 0.546747 AGTCCGTGGATCCTTTGGGA 60.547 55.000 14.23 11.01 46.81 4.37
473 474 3.085952 TCCTTTGGGATCAATGTCACC 57.914 47.619 0.00 0.00 36.57 4.02
474 475 1.745087 CCTTTGGGATCAATGTCACCG 59.255 52.381 0.00 0.00 32.28 4.94
475 476 2.617788 CCTTTGGGATCAATGTCACCGA 60.618 50.000 0.00 0.00 32.28 4.69
476 477 2.107950 TTGGGATCAATGTCACCGAC 57.892 50.000 0.00 0.00 0.00 4.79
477 478 0.980423 TGGGATCAATGTCACCGACA 59.020 50.000 0.00 0.00 46.90 4.35
478 479 1.338674 TGGGATCAATGTCACCGACAC 60.339 52.381 0.00 0.00 45.65 3.67
479 480 1.066143 GGGATCAATGTCACCGACACT 60.066 52.381 0.00 0.00 45.65 3.55
480 481 2.615493 GGGATCAATGTCACCGACACTT 60.615 50.000 0.00 0.00 45.65 3.16
481 482 2.673368 GGATCAATGTCACCGACACTTC 59.327 50.000 0.00 0.00 45.65 3.01
482 483 2.163818 TCAATGTCACCGACACTTCC 57.836 50.000 0.00 0.00 45.65 3.46
483 484 1.156736 CAATGTCACCGACACTTCCC 58.843 55.000 0.00 0.00 45.65 3.97
484 485 0.320421 AATGTCACCGACACTTCCCG 60.320 55.000 0.00 0.00 45.65 5.14
485 486 2.737376 GTCACCGACACTTCCCGC 60.737 66.667 0.00 0.00 32.09 6.13
486 487 2.915659 TCACCGACACTTCCCGCT 60.916 61.111 0.00 0.00 0.00 5.52
487 488 2.030562 CACCGACACTTCCCGCTT 59.969 61.111 0.00 0.00 0.00 4.68
488 489 2.030562 ACCGACACTTCCCGCTTG 59.969 61.111 0.00 0.00 0.00 4.01
489 490 2.030562 CCGACACTTCCCGCTTGT 59.969 61.111 0.00 0.00 0.00 3.16
490 491 2.317609 CCGACACTTCCCGCTTGTG 61.318 63.158 0.00 0.00 37.67 3.33
491 492 1.594293 CGACACTTCCCGCTTGTGT 60.594 57.895 0.00 0.00 46.03 3.72
492 493 1.831389 CGACACTTCCCGCTTGTGTG 61.831 60.000 2.63 0.00 43.81 3.82
493 494 0.814010 GACACTTCCCGCTTGTGTGT 60.814 55.000 2.63 0.00 43.81 3.72
494 495 1.095228 ACACTTCCCGCTTGTGTGTG 61.095 55.000 0.00 0.00 42.43 3.82
495 496 1.095228 CACTTCCCGCTTGTGTGTGT 61.095 55.000 0.00 0.00 0.00 3.72
496 497 1.095228 ACTTCCCGCTTGTGTGTGTG 61.095 55.000 0.00 0.00 0.00 3.82
497 498 1.785041 CTTCCCGCTTGTGTGTGTGG 61.785 60.000 0.00 0.00 0.00 4.17
498 499 2.203139 CCCGCTTGTGTGTGTGGA 60.203 61.111 0.00 0.00 36.02 4.02
499 500 1.600636 CCCGCTTGTGTGTGTGGAT 60.601 57.895 0.00 0.00 36.02 3.41
500 501 0.321210 CCCGCTTGTGTGTGTGGATA 60.321 55.000 0.00 0.00 36.02 2.59
501 502 0.796312 CCGCTTGTGTGTGTGGATAC 59.204 55.000 0.00 0.00 36.02 2.24
502 503 1.608025 CCGCTTGTGTGTGTGGATACT 60.608 52.381 0.00 0.00 36.02 2.12
503 504 2.353307 CCGCTTGTGTGTGTGGATACTA 60.353 50.000 0.00 0.00 36.02 1.82
504 505 2.666508 CGCTTGTGTGTGTGGATACTAC 59.333 50.000 0.00 0.00 37.61 2.73
505 506 3.614150 CGCTTGTGTGTGTGGATACTACT 60.614 47.826 0.00 0.00 37.61 2.57
506 507 4.315803 GCTTGTGTGTGTGGATACTACTT 58.684 43.478 0.00 0.00 37.61 2.24
507 508 4.755123 GCTTGTGTGTGTGGATACTACTTT 59.245 41.667 0.00 0.00 37.61 2.66
508 509 5.107065 GCTTGTGTGTGTGGATACTACTTTC 60.107 44.000 0.00 0.00 37.61 2.62
509 510 5.801531 TGTGTGTGTGGATACTACTTTCT 57.198 39.130 0.00 0.00 37.61 2.52
510 511 6.169557 TGTGTGTGTGGATACTACTTTCTT 57.830 37.500 0.00 0.00 37.61 2.52
511 512 5.989168 TGTGTGTGTGGATACTACTTTCTTG 59.011 40.000 0.00 0.00 37.61 3.02
512 513 5.989777 GTGTGTGTGGATACTACTTTCTTGT 59.010 40.000 0.00 0.00 37.61 3.16
513 514 6.482308 GTGTGTGTGGATACTACTTTCTTGTT 59.518 38.462 0.00 0.00 37.61 2.83
514 515 7.012044 GTGTGTGTGGATACTACTTTCTTGTTT 59.988 37.037 0.00 0.00 37.61 2.83
515 516 7.225931 TGTGTGTGGATACTACTTTCTTGTTTC 59.774 37.037 0.00 0.00 37.61 2.78
516 517 7.225931 GTGTGTGGATACTACTTTCTTGTTTCA 59.774 37.037 0.00 0.00 37.61 2.69
517 518 7.936847 TGTGTGGATACTACTTTCTTGTTTCAT 59.063 33.333 0.00 0.00 37.61 2.57
518 519 8.784043 GTGTGGATACTACTTTCTTGTTTCATT 58.216 33.333 0.00 0.00 37.61 2.57
519 520 8.783093 TGTGGATACTACTTTCTTGTTTCATTG 58.217 33.333 0.00 0.00 37.61 2.82
520 521 8.999431 GTGGATACTACTTTCTTGTTTCATTGA 58.001 33.333 0.00 0.00 37.61 2.57
521 522 8.999431 TGGATACTACTTTCTTGTTTCATTGAC 58.001 33.333 0.00 0.00 37.61 3.18
522 523 8.999431 GGATACTACTTTCTTGTTTCATTGACA 58.001 33.333 0.00 0.00 0.00 3.58
526 527 6.833342 ACTTTCTTGTTTCATTGACAATGC 57.167 33.333 21.17 9.71 38.77 3.56
527 528 5.459762 ACTTTCTTGTTTCATTGACAATGCG 59.540 36.000 21.17 1.48 38.77 4.73
528 529 3.899734 TCTTGTTTCATTGACAATGCGG 58.100 40.909 21.17 8.67 38.77 5.69
529 530 3.567585 TCTTGTTTCATTGACAATGCGGA 59.432 39.130 21.17 8.54 38.77 5.54
530 531 3.998099 TGTTTCATTGACAATGCGGAA 57.002 38.095 21.17 13.24 38.77 4.30
531 532 3.637432 TGTTTCATTGACAATGCGGAAC 58.363 40.909 21.17 21.61 38.77 3.62
532 533 3.317711 TGTTTCATTGACAATGCGGAACT 59.682 39.130 21.17 0.00 38.77 3.01
533 534 3.829886 TTCATTGACAATGCGGAACTC 57.170 42.857 21.17 0.00 38.77 3.01
534 535 2.083774 TCATTGACAATGCGGAACTCC 58.916 47.619 21.17 0.00 38.77 3.85
544 545 2.029964 GGAACTCCGGCGTGACAA 59.970 61.111 6.01 0.00 0.00 3.18
545 546 2.315386 GGAACTCCGGCGTGACAAC 61.315 63.158 6.01 0.00 0.00 3.32
546 547 1.593209 GAACTCCGGCGTGACAACA 60.593 57.895 6.01 0.00 0.00 3.33
547 548 0.949105 GAACTCCGGCGTGACAACAT 60.949 55.000 6.01 0.00 0.00 2.71
548 549 0.949105 AACTCCGGCGTGACAACATC 60.949 55.000 6.01 0.00 0.00 3.06
549 550 2.431771 TCCGGCGTGACAACATCG 60.432 61.111 6.01 0.00 0.00 3.84
550 551 2.736995 CCGGCGTGACAACATCGT 60.737 61.111 6.01 0.00 0.00 3.73
551 552 2.314647 CCGGCGTGACAACATCGTT 61.315 57.895 6.01 0.00 0.00 3.85
552 553 1.154672 CGGCGTGACAACATCGTTG 60.155 57.895 0.00 5.34 0.00 4.10
553 554 1.827315 CGGCGTGACAACATCGTTGT 61.827 55.000 12.05 12.05 37.82 3.32
554 555 0.384230 GGCGTGACAACATCGTTGTG 60.384 55.000 16.64 4.62 35.83 3.33
555 556 0.991770 GCGTGACAACATCGTTGTGC 60.992 55.000 16.64 10.42 35.83 4.57
556 557 0.581529 CGTGACAACATCGTTGTGCT 59.418 50.000 16.64 0.00 35.83 4.40
557 558 1.790043 CGTGACAACATCGTTGTGCTA 59.210 47.619 16.64 1.45 35.83 3.49
558 559 2.411748 CGTGACAACATCGTTGTGCTAT 59.588 45.455 16.64 0.00 35.83 2.97
559 560 3.120683 CGTGACAACATCGTTGTGCTATT 60.121 43.478 16.64 0.00 35.83 1.73
560 561 4.151070 GTGACAACATCGTTGTGCTATTG 58.849 43.478 16.64 0.00 35.83 1.90
561 562 3.163594 GACAACATCGTTGTGCTATTGC 58.836 45.455 16.64 0.00 35.83 3.56
573 574 1.468127 TGCTATTGCATGTGTGGAACG 59.532 47.619 0.00 0.00 45.31 3.95
574 575 1.202177 GCTATTGCATGTGTGGAACGG 60.202 52.381 0.00 0.00 38.55 4.44
575 576 2.355197 CTATTGCATGTGTGGAACGGA 58.645 47.619 0.00 0.00 42.39 4.69
576 577 1.167851 ATTGCATGTGTGGAACGGAG 58.832 50.000 0.00 0.00 42.39 4.63
578 579 0.884259 TGCATGTGTGGAACGGAGTG 60.884 55.000 0.00 0.00 45.00 3.51
579 580 1.577328 GCATGTGTGGAACGGAGTGG 61.577 60.000 0.00 0.00 45.00 4.00
580 581 1.302511 ATGTGTGGAACGGAGTGGC 60.303 57.895 0.00 0.00 45.00 5.01
581 582 2.050836 ATGTGTGGAACGGAGTGGCA 62.051 55.000 0.00 0.00 45.00 4.92
582 583 1.961277 GTGTGGAACGGAGTGGCAG 60.961 63.158 0.00 0.00 45.00 4.85
583 584 2.358737 GTGGAACGGAGTGGCAGG 60.359 66.667 0.00 0.00 45.00 4.85
584 585 2.525629 TGGAACGGAGTGGCAGGA 60.526 61.111 0.00 0.00 45.00 3.86
585 586 2.266055 GGAACGGAGTGGCAGGAG 59.734 66.667 0.00 0.00 45.00 3.69
586 587 2.266055 GAACGGAGTGGCAGGAGG 59.734 66.667 0.00 0.00 45.00 4.30
587 588 2.203788 AACGGAGTGGCAGGAGGA 60.204 61.111 0.00 0.00 45.00 3.71
588 589 1.613630 AACGGAGTGGCAGGAGGAT 60.614 57.895 0.00 0.00 45.00 3.24
589 590 1.201429 AACGGAGTGGCAGGAGGATT 61.201 55.000 0.00 0.00 45.00 3.01
590 591 1.144936 CGGAGTGGCAGGAGGATTC 59.855 63.158 0.00 0.00 0.00 2.52
591 592 1.333636 CGGAGTGGCAGGAGGATTCT 61.334 60.000 0.00 0.00 0.00 2.40
592 593 0.467804 GGAGTGGCAGGAGGATTCTC 59.532 60.000 0.00 0.00 39.25 2.87
602 603 2.947127 GAGGATTCTCCCAGGATTGG 57.053 55.000 0.00 0.00 44.60 3.16
663 664 8.812147 ATAATGCTGATGTTTCATTAATGCAG 57.188 30.769 10.76 11.40 36.59 4.41
664 665 5.900865 TGCTGATGTTTCATTAATGCAGA 57.099 34.783 17.51 5.16 0.00 4.26
665 666 5.886992 TGCTGATGTTTCATTAATGCAGAG 58.113 37.500 17.51 9.36 0.00 3.35
666 667 5.648960 TGCTGATGTTTCATTAATGCAGAGA 59.351 36.000 17.51 4.50 0.00 3.10
667 668 6.320418 TGCTGATGTTTCATTAATGCAGAGAT 59.680 34.615 17.51 8.15 0.00 2.75
668 669 7.147966 TGCTGATGTTTCATTAATGCAGAGATT 60.148 33.333 17.51 0.00 0.00 2.40
669 670 7.705325 GCTGATGTTTCATTAATGCAGAGATTT 59.295 33.333 17.51 0.00 0.00 2.17
670 671 8.920509 TGATGTTTCATTAATGCAGAGATTTG 57.079 30.769 10.76 0.00 0.00 2.32
671 672 8.525316 TGATGTTTCATTAATGCAGAGATTTGT 58.475 29.630 10.76 0.00 0.00 2.83
672 673 8.922058 ATGTTTCATTAATGCAGAGATTTGTC 57.078 30.769 10.76 0.00 0.00 3.18
673 674 8.114331 TGTTTCATTAATGCAGAGATTTGTCT 57.886 30.769 10.76 0.00 0.00 3.41
674 675 8.579006 TGTTTCATTAATGCAGAGATTTGTCTT 58.421 29.630 10.76 0.00 0.00 3.01
675 676 9.415544 GTTTCATTAATGCAGAGATTTGTCTTT 57.584 29.630 10.76 0.00 0.00 2.52
676 677 9.985730 TTTCATTAATGCAGAGATTTGTCTTTT 57.014 25.926 10.76 0.00 0.00 2.27
677 678 9.985730 TTCATTAATGCAGAGATTTGTCTTTTT 57.014 25.926 10.76 0.00 0.00 1.94
683 684 8.807667 ATGCAGAGATTTGTCTTTTTAACAAG 57.192 30.769 0.00 0.00 37.86 3.16
684 685 7.995289 TGCAGAGATTTGTCTTTTTAACAAGA 58.005 30.769 0.00 0.00 37.86 3.02
685 686 8.465999 TGCAGAGATTTGTCTTTTTAACAAGAA 58.534 29.630 5.65 0.00 37.86 2.52
686 687 8.962111 GCAGAGATTTGTCTTTTTAACAAGAAG 58.038 33.333 5.65 0.00 37.86 2.85
705 706 9.396022 ACAAGAAGAGAAAAGAGTGTAAAATCA 57.604 29.630 0.00 0.00 0.00 2.57
708 709 9.566432 AGAAGAGAAAAGAGTGTAAAATCATGT 57.434 29.630 0.00 0.00 0.00 3.21
751 752 9.836864 AGAAGGAAAAGAAAAATAAACTGCATT 57.163 25.926 0.00 0.00 0.00 3.56
752 753 9.868389 GAAGGAAAAGAAAAATAAACTGCATTG 57.132 29.630 0.00 0.00 0.00 2.82
753 754 8.962884 AGGAAAAGAAAAATAAACTGCATTGT 57.037 26.923 0.00 0.00 0.00 2.71
758 759 9.476202 AAAGAAAAATAAACTGCATTGTACTCC 57.524 29.630 0.00 0.00 0.00 3.85
759 760 7.602753 AGAAAAATAAACTGCATTGTACTCCC 58.397 34.615 0.00 0.00 0.00 4.30
760 761 7.451566 AGAAAAATAAACTGCATTGTACTCCCT 59.548 33.333 0.00 0.00 0.00 4.20
761 762 6.759497 AAATAAACTGCATTGTACTCCCTC 57.241 37.500 0.00 0.00 0.00 4.30
762 763 2.789409 AACTGCATTGTACTCCCTCC 57.211 50.000 0.00 0.00 0.00 4.30
763 764 0.537188 ACTGCATTGTACTCCCTCCG 59.463 55.000 0.00 0.00 0.00 4.63
764 765 0.537188 CTGCATTGTACTCCCTCCGT 59.463 55.000 0.00 0.00 0.00 4.69
765 766 1.754803 CTGCATTGTACTCCCTCCGTA 59.245 52.381 0.00 0.00 0.00 4.02
766 767 2.167693 CTGCATTGTACTCCCTCCGTAA 59.832 50.000 0.00 0.00 0.00 3.18
767 768 2.093869 TGCATTGTACTCCCTCCGTAAC 60.094 50.000 0.00 0.00 0.00 2.50
768 769 2.740904 GCATTGTACTCCCTCCGTAACC 60.741 54.545 0.00 0.00 0.00 2.85
769 770 2.307496 TTGTACTCCCTCCGTAACCA 57.693 50.000 0.00 0.00 0.00 3.67
770 771 2.307496 TGTACTCCCTCCGTAACCAA 57.693 50.000 0.00 0.00 0.00 3.67
771 772 2.607499 TGTACTCCCTCCGTAACCAAA 58.393 47.619 0.00 0.00 0.00 3.28
772 773 3.175594 TGTACTCCCTCCGTAACCAAAT 58.824 45.455 0.00 0.00 0.00 2.32
773 774 4.352009 TGTACTCCCTCCGTAACCAAATA 58.648 43.478 0.00 0.00 0.00 1.40
774 775 4.403432 TGTACTCCCTCCGTAACCAAATAG 59.597 45.833 0.00 0.00 0.00 1.73
775 776 3.716431 ACTCCCTCCGTAACCAAATAGA 58.284 45.455 0.00 0.00 0.00 1.98
776 777 3.705072 ACTCCCTCCGTAACCAAATAGAG 59.295 47.826 0.00 0.00 0.00 2.43
777 778 2.433239 TCCCTCCGTAACCAAATAGAGC 59.567 50.000 0.00 0.00 0.00 4.09
778 779 2.470821 CCTCCGTAACCAAATAGAGCG 58.529 52.381 0.00 0.00 0.00 5.03
779 780 2.159142 CCTCCGTAACCAAATAGAGCGT 60.159 50.000 0.00 0.00 0.00 5.07
780 781 3.518590 CTCCGTAACCAAATAGAGCGTT 58.481 45.455 0.00 0.00 0.00 4.84
781 782 3.929094 TCCGTAACCAAATAGAGCGTTT 58.071 40.909 0.00 0.00 0.00 3.60
782 783 5.070770 TCCGTAACCAAATAGAGCGTTTA 57.929 39.130 0.00 0.00 0.00 2.01
783 784 5.104374 TCCGTAACCAAATAGAGCGTTTAG 58.896 41.667 0.00 0.00 0.00 1.85
784 785 5.104374 CCGTAACCAAATAGAGCGTTTAGA 58.896 41.667 0.00 0.00 0.00 2.10
785 786 5.751990 CCGTAACCAAATAGAGCGTTTAGAT 59.248 40.000 0.00 0.00 0.00 1.98
786 787 6.074463 CCGTAACCAAATAGAGCGTTTAGATC 60.074 42.308 0.00 0.00 35.01 2.75
787 788 6.474427 CGTAACCAAATAGAGCGTTTAGATCA 59.526 38.462 0.00 0.00 37.82 2.92
788 789 6.663944 AACCAAATAGAGCGTTTAGATCAC 57.336 37.500 0.00 0.00 37.82 3.06
789 790 5.978814 ACCAAATAGAGCGTTTAGATCACT 58.021 37.500 0.00 0.00 37.82 3.41
790 791 6.407202 ACCAAATAGAGCGTTTAGATCACTT 58.593 36.000 0.00 0.00 37.82 3.16
791 792 6.879458 ACCAAATAGAGCGTTTAGATCACTTT 59.121 34.615 0.00 0.00 37.82 2.66
792 793 7.148407 ACCAAATAGAGCGTTTAGATCACTTTG 60.148 37.037 0.00 0.00 37.99 2.77
793 794 7.148407 CCAAATAGAGCGTTTAGATCACTTTGT 60.148 37.037 0.00 0.00 37.28 2.83
794 795 7.907214 AATAGAGCGTTTAGATCACTTTGTT 57.093 32.000 0.00 0.00 37.82 2.83
795 796 5.847670 AGAGCGTTTAGATCACTTTGTTC 57.152 39.130 0.00 0.00 37.82 3.18
796 797 5.542779 AGAGCGTTTAGATCACTTTGTTCT 58.457 37.500 0.00 0.00 37.82 3.01
797 798 5.992217 AGAGCGTTTAGATCACTTTGTTCTT 59.008 36.000 0.00 0.00 37.82 2.52
798 799 6.483640 AGAGCGTTTAGATCACTTTGTTCTTT 59.516 34.615 0.00 0.00 37.82 2.52
799 800 6.430451 AGCGTTTAGATCACTTTGTTCTTTG 58.570 36.000 0.00 0.00 29.96 2.77
800 801 6.038271 AGCGTTTAGATCACTTTGTTCTTTGT 59.962 34.615 0.00 0.00 29.96 2.83
801 802 6.691388 GCGTTTAGATCACTTTGTTCTTTGTT 59.309 34.615 0.00 0.00 29.96 2.83
802 803 7.220108 GCGTTTAGATCACTTTGTTCTTTGTTT 59.780 33.333 0.00 0.00 29.96 2.83
803 804 9.710979 CGTTTAGATCACTTTGTTCTTTGTTTA 57.289 29.630 0.00 0.00 29.96 2.01
807 808 8.506168 AGATCACTTTGTTCTTTGTTTACAGA 57.494 30.769 0.00 0.00 0.00 3.41
808 809 8.616076 AGATCACTTTGTTCTTTGTTTACAGAG 58.384 33.333 0.00 0.00 32.17 3.35
809 810 7.083875 TCACTTTGTTCTTTGTTTACAGAGG 57.916 36.000 1.18 0.00 30.66 3.69
810 811 6.094881 TCACTTTGTTCTTTGTTTACAGAGGG 59.905 38.462 1.18 0.00 30.90 4.30
811 812 6.094881 CACTTTGTTCTTTGTTTACAGAGGGA 59.905 38.462 1.18 0.00 31.16 4.20
812 813 6.318900 ACTTTGTTCTTTGTTTACAGAGGGAG 59.681 38.462 1.18 0.00 30.66 4.30
813 814 5.367945 TGTTCTTTGTTTACAGAGGGAGT 57.632 39.130 1.18 0.00 0.00 3.85
814 815 6.488769 TGTTCTTTGTTTACAGAGGGAGTA 57.511 37.500 1.18 0.00 0.00 2.59
815 816 7.074653 TGTTCTTTGTTTACAGAGGGAGTAT 57.925 36.000 1.18 0.00 0.00 2.12
1140 1149 4.135153 CTCACGGCGGAGACCCTG 62.135 72.222 13.24 0.00 37.05 4.45
1296 1308 7.088905 TCAAGAACGAGGACTACAAGTAATTC 58.911 38.462 0.00 0.00 0.00 2.17
1365 1378 6.454795 TCTGGTAGGCATTGAATTGAAAAAC 58.545 36.000 0.00 0.00 0.00 2.43
1475 1489 2.711922 CCAGTACCTCGAGCCGCTT 61.712 63.158 6.99 0.00 0.00 4.68
1536 1550 6.038161 CGATGGAAGTATGCACTCCAAATTTA 59.962 38.462 11.45 0.00 36.33 1.40
1537 1551 6.509418 TGGAAGTATGCACTCCAAATTTAC 57.491 37.500 6.26 0.00 32.29 2.01
1548 1563 8.855110 TGCACTCCAAATTTACTTCTTTTGATA 58.145 29.630 0.00 0.00 33.24 2.15
1933 2080 6.826668 TCTCTGTGTTAAAGATTGGAGTTGA 58.173 36.000 0.00 0.00 0.00 3.18
1967 2114 5.187967 CCTCTCTGTTAAACACATACTCCCT 59.812 44.000 0.00 0.00 33.76 4.20
1973 2120 5.245751 TGTTAAACACATACTCCCTCCGTTA 59.754 40.000 0.00 0.00 0.00 3.18
1975 2122 2.811410 ACACATACTCCCTCCGTTACA 58.189 47.619 0.00 0.00 0.00 2.41
1976 2123 3.167485 ACACATACTCCCTCCGTTACAA 58.833 45.455 0.00 0.00 0.00 2.41
1977 2124 3.579586 ACACATACTCCCTCCGTTACAAA 59.420 43.478 0.00 0.00 0.00 2.83
1978 2125 4.040706 ACACATACTCCCTCCGTTACAAAA 59.959 41.667 0.00 0.00 0.00 2.44
1982 2129 6.381994 ACATACTCCCTCCGTTACAAAATAGA 59.618 38.462 0.00 0.00 0.00 1.98
1983 2130 5.952347 ACTCCCTCCGTTACAAAATAGAT 57.048 39.130 0.00 0.00 0.00 1.98
1984 2131 5.671493 ACTCCCTCCGTTACAAAATAGATG 58.329 41.667 0.00 0.00 0.00 2.90
1985 2132 5.424252 ACTCCCTCCGTTACAAAATAGATGA 59.576 40.000 0.00 0.00 0.00 2.92
1987 2134 5.424252 TCCCTCCGTTACAAAATAGATGACT 59.576 40.000 0.00 0.00 0.00 3.41
1988 2135 5.753921 CCCTCCGTTACAAAATAGATGACTC 59.246 44.000 0.00 0.00 0.00 3.36
1990 2137 6.816640 CCTCCGTTACAAAATAGATGACTCAA 59.183 38.462 0.00 0.00 0.00 3.02
1991 2138 7.201530 CCTCCGTTACAAAATAGATGACTCAAC 60.202 40.741 0.00 0.00 0.00 3.18
1992 2139 7.383687 TCCGTTACAAAATAGATGACTCAACT 58.616 34.615 0.00 0.00 0.00 3.16
1993 2140 7.876068 TCCGTTACAAAATAGATGACTCAACTT 59.124 33.333 0.00 0.00 0.00 2.66
1994 2141 8.504005 CCGTTACAAAATAGATGACTCAACTTT 58.496 33.333 0.00 0.00 0.00 2.66
1995 2142 9.318041 CGTTACAAAATAGATGACTCAACTTTG 57.682 33.333 0.00 0.00 0.00 2.77
1999 2146 9.561069 ACAAAATAGATGACTCAACTTTGTACT 57.439 29.630 4.04 0.00 0.00 2.73
2006 2153 9.046296 AGATGACTCAACTTTGTACTAACTTTG 57.954 33.333 0.00 0.00 0.00 2.77
2007 2154 8.732746 ATGACTCAACTTTGTACTAACTTTGT 57.267 30.769 0.00 0.00 0.00 2.83
2008 2155 9.826574 ATGACTCAACTTTGTACTAACTTTGTA 57.173 29.630 0.00 0.00 0.00 2.41
2009 2156 9.090692 TGACTCAACTTTGTACTAACTTTGTAC 57.909 33.333 6.58 6.58 40.27 2.90
2043 2190 9.003658 AGTACAAAGTTGAGTCATCTATTTTGG 57.996 33.333 14.35 0.00 40.00 3.28
2044 2191 8.999431 GTACAAAGTTGAGTCATCTATTTTGGA 58.001 33.333 14.35 6.88 40.00 3.53
2045 2192 8.463930 ACAAAGTTGAGTCATCTATTTTGGAA 57.536 30.769 14.35 0.00 40.00 3.53
2046 2193 8.352942 ACAAAGTTGAGTCATCTATTTTGGAAC 58.647 33.333 14.35 0.00 40.00 3.62
2047 2194 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
2048 2195 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
2049 2196 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
2050 2197 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
2051 2198 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
2052 2199 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
2053 2200 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
2054 2201 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
2055 2202 2.093128 TCTATTTTGGAACGGAGGGAGC 60.093 50.000 0.00 0.00 0.00 4.70
2056 2203 0.404040 ATTTTGGAACGGAGGGAGCA 59.596 50.000 0.00 0.00 0.00 4.26
2067 2214 1.446907 GAGGGAGCAGTTGTCATGTG 58.553 55.000 0.00 0.00 0.00 3.21
2113 2344 8.726988 TGGTTTAGAGATATTTTCTTTTGACCG 58.273 33.333 0.00 0.00 33.74 4.79
2261 2494 4.516698 AGTGCACTTGAAGACGATTTTGAT 59.483 37.500 15.25 0.00 0.00 2.57
2306 2539 1.337387 GGACAGCCTATGGACGTAGAC 59.663 57.143 0.00 0.00 0.00 2.59
2362 2595 9.941664 ACTTGCTAAATGATCTAAATCAATTCG 57.058 29.630 0.00 0.00 44.85 3.34
2448 2681 1.382629 CCCCACCAAAGAACGGGAT 59.617 57.895 0.00 0.00 41.62 3.85
2525 2758 9.777297 TCTGCTATATATGAATTGCTTGTTACA 57.223 29.630 0.00 0.00 0.00 2.41
2533 2766 7.886629 ATGAATTGCTTGTTACATAGATGGT 57.113 32.000 0.00 0.00 0.00 3.55
2685 2919 2.080336 TTGGGAGTTCAGGCCAAGGG 62.080 60.000 5.01 0.00 0.00 3.95
2713 2947 7.562088 TGTTCTGTTTTCTTATTGGTTAAGGGT 59.438 33.333 0.00 0.00 38.29 4.34
2918 3155 4.443621 TGGACGTGACTCAATAACACAAA 58.556 39.130 0.00 0.00 34.69 2.83
2933 3170 2.825532 ACACAAAACCAACAAGCAGAGT 59.174 40.909 0.00 0.00 0.00 3.24
3017 3256 8.207545 AGACTGAAACAGTGACTTTCTCTTTAT 58.792 33.333 9.15 0.00 45.44 1.40
3018 3257 8.738645 ACTGAAACAGTGACTTTCTCTTTATT 57.261 30.769 0.00 0.00 43.63 1.40
3276 3515 6.042638 TCACAAACTGGTCCAAATTTGAAA 57.957 33.333 25.05 14.45 35.93 2.69
3474 3713 6.710597 TCGTGTCTAAAATGTATAGAGCCT 57.289 37.500 0.00 0.00 30.33 4.58
3475 3714 6.736123 TCGTGTCTAAAATGTATAGAGCCTC 58.264 40.000 0.00 0.00 30.33 4.70
3765 4007 7.816945 TCATATGTATTAGTGATGTCATGCG 57.183 36.000 1.90 0.00 0.00 4.73
3949 4191 2.291741 GCAGCGCAGGAGCTTTTATTAT 59.708 45.455 11.47 0.00 46.80 1.28
3950 4192 3.498397 GCAGCGCAGGAGCTTTTATTATA 59.502 43.478 11.47 0.00 46.80 0.98
3951 4193 4.611581 GCAGCGCAGGAGCTTTTATTATAC 60.612 45.833 11.47 0.00 46.80 1.47
3952 4194 4.752101 CAGCGCAGGAGCTTTTATTATACT 59.248 41.667 11.47 0.00 46.80 2.12
3953 4195 4.991687 AGCGCAGGAGCTTTTATTATACTC 59.008 41.667 11.47 0.00 46.80 2.59
3954 4196 4.152580 GCGCAGGAGCTTTTATTATACTCC 59.847 45.833 0.30 0.00 45.99 3.85
3955 4197 4.691216 CGCAGGAGCTTTTATTATACTCCC 59.309 45.833 3.80 0.00 46.68 4.30
3956 4198 5.511545 CGCAGGAGCTTTTATTATACTCCCT 60.512 44.000 3.80 0.00 46.68 4.20
3957 4199 5.935206 GCAGGAGCTTTTATTATACTCCCTC 59.065 44.000 3.80 0.00 46.68 4.30
3958 4200 6.239743 GCAGGAGCTTTTATTATACTCCCTCT 60.240 42.308 3.80 0.00 46.68 3.69
3959 4201 7.158021 CAGGAGCTTTTATTATACTCCCTCTG 58.842 42.308 3.80 0.00 46.68 3.35
3960 4202 6.847036 AGGAGCTTTTATTATACTCCCTCTGT 59.153 38.462 3.80 0.00 46.68 3.41
3961 4203 7.015779 AGGAGCTTTTATTATACTCCCTCTGTC 59.984 40.741 3.80 0.00 46.68 3.51
3962 4204 7.068686 AGCTTTTATTATACTCCCTCTGTCC 57.931 40.000 0.00 0.00 0.00 4.02
3963 4205 6.043358 AGCTTTTATTATACTCCCTCTGTCCC 59.957 42.308 0.00 0.00 0.00 4.46
3964 4206 6.183361 GCTTTTATTATACTCCCTCTGTCCCA 60.183 42.308 0.00 0.00 0.00 4.37
3965 4207 7.474936 GCTTTTATTATACTCCCTCTGTCCCAT 60.475 40.741 0.00 0.00 0.00 4.00
3966 4208 9.101325 CTTTTATTATACTCCCTCTGTCCCATA 57.899 37.037 0.00 0.00 0.00 2.74
3967 4209 9.455144 TTTTATTATACTCCCTCTGTCCCATAA 57.545 33.333 0.00 0.00 0.00 1.90
3968 4210 9.629649 TTTATTATACTCCCTCTGTCCCATAAT 57.370 33.333 0.00 0.00 0.00 1.28
3969 4211 6.935240 TTATACTCCCTCTGTCCCATAATG 57.065 41.667 0.00 0.00 0.00 1.90
3970 4212 3.136641 ACTCCCTCTGTCCCATAATGT 57.863 47.619 0.00 0.00 0.00 2.71
3971 4213 4.280789 ACTCCCTCTGTCCCATAATGTA 57.719 45.455 0.00 0.00 0.00 2.29
3972 4214 4.631234 ACTCCCTCTGTCCCATAATGTAA 58.369 43.478 0.00 0.00 0.00 2.41
3973 4215 4.656112 ACTCCCTCTGTCCCATAATGTAAG 59.344 45.833 0.00 0.00 0.00 2.34
3974 4216 4.890988 TCCCTCTGTCCCATAATGTAAGA 58.109 43.478 0.00 0.00 0.00 2.10
3975 4217 5.476983 TCCCTCTGTCCCATAATGTAAGAT 58.523 41.667 0.00 0.00 0.00 2.40
3976 4218 5.307976 TCCCTCTGTCCCATAATGTAAGATG 59.692 44.000 0.00 0.00 0.00 2.90
3977 4219 5.072329 CCCTCTGTCCCATAATGTAAGATGT 59.928 44.000 0.00 0.00 0.00 3.06
3978 4220 6.409695 CCCTCTGTCCCATAATGTAAGATGTT 60.410 42.308 0.00 0.00 0.00 2.71
3979 4221 7.056635 CCTCTGTCCCATAATGTAAGATGTTT 58.943 38.462 0.00 0.00 0.00 2.83
3980 4222 7.557719 CCTCTGTCCCATAATGTAAGATGTTTT 59.442 37.037 0.00 0.00 0.00 2.43
3981 4223 8.877864 TCTGTCCCATAATGTAAGATGTTTTT 57.122 30.769 0.00 0.00 0.00 1.94
4026 4268 3.720949 CGTCTTACATTATGGGACGGA 57.279 47.619 20.50 2.30 43.69 4.69
4027 4269 3.639538 CGTCTTACATTATGGGACGGAG 58.360 50.000 20.50 2.74 43.69 4.63
4028 4270 3.552273 CGTCTTACATTATGGGACGGAGG 60.552 52.174 20.50 5.87 43.69 4.30
4029 4271 2.969950 TCTTACATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
4030 4272 2.779429 TACATTATGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
4031 4273 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
4437 4784 5.048013 ACCAAATGAAGAAAAGGATTCGGTC 60.048 40.000 0.00 0.00 0.00 4.79
4453 4801 4.561735 TCGGTCATTTTTGGAAACTCAC 57.438 40.909 0.00 0.00 0.00 3.51
4495 4843 7.029053 AGATACTGCCTAAGGGTTTAACTTT 57.971 36.000 0.00 0.00 34.45 2.66
4719 5067 8.970859 AGAAAATAAACTCATATGGTGGAGAG 57.029 34.615 2.13 0.00 35.17 3.20
4885 5233 1.707989 TGAAGGCACCAGGTCCATTTA 59.292 47.619 9.90 0.00 0.00 1.40
4917 5265 8.776470 CATGTAAATGGATTTGATTATTTGGCC 58.224 33.333 0.00 0.00 0.00 5.36
4991 5339 1.613437 CCCTTGTTTCTCGGCATGTTT 59.387 47.619 0.00 0.00 0.00 2.83
5150 5498 5.297547 TCAGTGTGTTGATTTGGTCTCTAC 58.702 41.667 0.00 0.00 0.00 2.59
5220 5568 3.504375 TCATGACAGAGATCGGGATCAT 58.496 45.455 11.00 1.22 40.22 2.45
5331 5679 2.194212 CCGGACCCGAGATGACGAT 61.194 63.158 10.42 0.00 42.83 3.73
5403 5751 4.320456 CGTGGCAGGCACAGGAGT 62.320 66.667 25.58 0.00 0.00 3.85
5404 5752 2.113986 GTGGCAGGCACAGGAGTT 59.886 61.111 21.89 0.00 0.00 3.01
5535 5883 0.470268 GTCCGAGGGAGGAGCCTAAT 60.470 60.000 0.00 0.00 41.68 1.73
5536 5884 1.155323 TCCGAGGGAGGAGCCTAATA 58.845 55.000 0.00 0.00 34.92 0.98
5713 6061 6.455647 AGCTTAAAACCAACAAAGGATTAGC 58.544 36.000 0.00 0.00 0.00 3.09
5753 6101 3.983344 CACTGCAAGCTTGTCAAAATACC 59.017 43.478 26.55 8.02 37.60 2.73
5779 6127 0.386113 TGTAACTTTGGCGGTTTGGC 59.614 50.000 0.00 0.00 45.12 4.52
5804 6152 0.249398 TTTCTGGCTCTACCTTCCGC 59.751 55.000 0.00 0.00 40.22 5.54
5996 6353 5.412640 CAATAAGCTGCATTTTGACCATGA 58.587 37.500 1.02 0.00 0.00 3.07
6026 6383 6.803320 GGTCAACTGTGTCATACAATTTCATG 59.197 38.462 0.00 0.00 39.20 3.07
6031 6412 6.128090 ACTGTGTCATACAATTTCATGCTCAG 60.128 38.462 13.59 13.59 39.20 3.35
6063 6444 7.492669 GCTTCATACTTAGCTGACAAGATGTTA 59.507 37.037 0.00 0.00 34.57 2.41
6114 6611 9.557061 TCACTAGTGATCTACTATAAACGATGT 57.443 33.333 21.74 0.00 40.94 3.06
6215 6713 7.177744 GGTGGATAGTGAATTCCCTAACAAAAA 59.822 37.037 2.27 0.00 0.00 1.94
6283 6782 3.569194 TTTGGTGAACTTCTGTGGCTA 57.431 42.857 0.00 0.00 0.00 3.93
6287 6786 3.838317 TGGTGAACTTCTGTGGCTATAGT 59.162 43.478 0.84 0.00 0.00 2.12
6301 6800 3.868077 GGCTATAGTCTTGAGCAACACAG 59.132 47.826 0.84 0.00 37.98 3.66
6306 6805 2.149578 GTCTTGAGCAACACAGCATCT 58.850 47.619 0.00 0.00 36.85 2.90
6317 6816 5.170748 CAACACAGCATCTGTATCACAGTA 58.829 41.667 6.23 0.00 46.03 2.74
6491 6990 2.113139 CAACCCTTGGACGGCAGT 59.887 61.111 0.00 0.00 0.00 4.40
6576 7075 4.722700 CCGCCACCCAGGACAAGG 62.723 72.222 0.00 0.00 41.22 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 2.982488 CCTACCCTAGAAGGATTGCCAT 59.018 50.000 0.00 0.00 37.67 4.40
20 21 7.324388 TCAAGAAAATCAACCTACCCTAGAA 57.676 36.000 0.00 0.00 0.00 2.10
21 22 6.576442 GCTCAAGAAAATCAACCTACCCTAGA 60.576 42.308 0.00 0.00 0.00 2.43
35 36 2.037641 GGCCCACAAAGCTCAAGAAAAT 59.962 45.455 0.00 0.00 0.00 1.82
36 37 1.412343 GGCCCACAAAGCTCAAGAAAA 59.588 47.619 0.00 0.00 0.00 2.29
89 90 4.801330 TGTCGGTGATGAGTCAAAGTAT 57.199 40.909 0.00 0.00 35.80 2.12
96 97 4.466828 CATTTGTTTGTCGGTGATGAGTC 58.533 43.478 0.00 0.00 0.00 3.36
125 126 3.739300 CAGCAAGCCAAAGAAAATGTCTG 59.261 43.478 0.00 0.00 36.40 3.51
126 127 3.638160 TCAGCAAGCCAAAGAAAATGTCT 59.362 39.130 0.00 0.00 38.69 3.41
146 147 2.102925 TGGATCTGATAAGCACGCATCA 59.897 45.455 0.00 0.00 0.00 3.07
170 171 5.826737 CCTACCTCTTTGCATGATCTCATTT 59.173 40.000 0.00 0.00 33.61 2.32
171 172 5.104193 ACCTACCTCTTTGCATGATCTCATT 60.104 40.000 0.00 0.00 33.61 2.57
232 233 2.981898 AGACGTTATTTAGCACCACCC 58.018 47.619 0.00 0.00 0.00 4.61
237 238 5.348997 AGCAGAAGAAGACGTTATTTAGCAC 59.651 40.000 0.00 0.00 0.00 4.40
238 239 5.479306 AGCAGAAGAAGACGTTATTTAGCA 58.521 37.500 0.00 0.00 0.00 3.49
239 240 6.410243 AAGCAGAAGAAGACGTTATTTAGC 57.590 37.500 0.00 0.00 0.00 3.09
251 252 2.928757 CTGACCATCGAAGCAGAAGAAG 59.071 50.000 0.00 0.00 0.00 2.85
271 272 4.308458 TGTAACGGGCAGCGCACT 62.308 61.111 11.47 0.00 0.00 4.40
289 290 1.464734 TGTCCACCTGATCTCGTCTC 58.535 55.000 0.00 0.00 0.00 3.36
323 324 2.971915 GACTACGACACACAAACTCTCG 59.028 50.000 0.00 0.00 0.00 4.04
339 340 1.033574 AGCACCATCGGCTAGACTAC 58.966 55.000 0.00 0.00 40.47 2.73
356 357 3.961182 TCTACGTCATTGATACCGAAGC 58.039 45.455 0.00 0.00 0.00 3.86
390 391 3.699130 GACGTCCGCTCGAGTCGAC 62.699 68.421 24.28 21.37 34.70 4.20
406 407 2.288273 GGTGGCTCGGTCACATATAGAC 60.288 54.545 10.16 0.06 40.26 2.59
408 409 1.686587 TGGTGGCTCGGTCACATATAG 59.313 52.381 10.16 0.00 40.26 1.31
410 411 1.070758 GATGGTGGCTCGGTCACATAT 59.929 52.381 10.16 4.73 40.26 1.78
412 413 1.221840 GATGGTGGCTCGGTCACAT 59.778 57.895 10.16 3.24 40.26 3.21
413 414 1.480212 AAGATGGTGGCTCGGTCACA 61.480 55.000 10.16 0.00 40.26 3.58
414 415 0.741221 GAAGATGGTGGCTCGGTCAC 60.741 60.000 0.61 0.61 37.44 3.67
415 416 0.904865 AGAAGATGGTGGCTCGGTCA 60.905 55.000 0.00 0.00 0.00 4.02
416 417 1.112113 TAGAAGATGGTGGCTCGGTC 58.888 55.000 0.00 0.00 0.00 4.79
417 418 0.824759 GTAGAAGATGGTGGCTCGGT 59.175 55.000 0.00 0.00 0.00 4.69
418 419 1.067821 GAGTAGAAGATGGTGGCTCGG 59.932 57.143 0.00 0.00 0.00 4.63
419 420 1.751351 TGAGTAGAAGATGGTGGCTCG 59.249 52.381 0.00 0.00 0.00 5.03
420 421 3.244044 GGATGAGTAGAAGATGGTGGCTC 60.244 52.174 0.00 0.00 0.00 4.70
421 422 2.703007 GGATGAGTAGAAGATGGTGGCT 59.297 50.000 0.00 0.00 0.00 4.75
422 423 2.435805 TGGATGAGTAGAAGATGGTGGC 59.564 50.000 0.00 0.00 0.00 5.01
423 424 3.708631 ACTGGATGAGTAGAAGATGGTGG 59.291 47.826 0.00 0.00 30.86 4.61
424 425 4.202202 GGACTGGATGAGTAGAAGATGGTG 60.202 50.000 0.00 0.00 33.83 4.17
425 426 3.964031 GGACTGGATGAGTAGAAGATGGT 59.036 47.826 0.00 0.00 33.83 3.55
426 427 3.005261 CGGACTGGATGAGTAGAAGATGG 59.995 52.174 0.00 0.00 33.83 3.51
427 428 3.634448 ACGGACTGGATGAGTAGAAGATG 59.366 47.826 0.00 0.00 33.83 2.90
428 429 3.634448 CACGGACTGGATGAGTAGAAGAT 59.366 47.826 0.00 0.00 33.83 2.40
429 430 3.017442 CACGGACTGGATGAGTAGAAGA 58.983 50.000 0.00 0.00 33.83 2.87
430 431 2.099921 CCACGGACTGGATGAGTAGAAG 59.900 54.545 0.00 0.00 43.95 2.85
431 432 2.100197 CCACGGACTGGATGAGTAGAA 58.900 52.381 0.00 0.00 43.95 2.10
432 433 1.283905 TCCACGGACTGGATGAGTAGA 59.716 52.381 0.00 0.00 44.99 2.59
433 434 1.763968 TCCACGGACTGGATGAGTAG 58.236 55.000 0.00 0.00 44.99 2.57
434 435 3.991972 TCCACGGACTGGATGAGTA 57.008 52.632 0.00 0.00 44.99 2.59
435 436 4.865629 TCCACGGACTGGATGAGT 57.134 55.556 0.00 0.00 44.99 3.41
441 442 0.392998 CCAAAGGATCCACGGACTGG 60.393 60.000 15.82 6.93 42.29 4.00
442 443 0.392998 CCCAAAGGATCCACGGACTG 60.393 60.000 15.82 1.39 33.47 3.51
443 444 0.546747 TCCCAAAGGATCCACGGACT 60.547 55.000 15.82 0.00 37.19 3.85
444 445 1.988015 TCCCAAAGGATCCACGGAC 59.012 57.895 15.82 0.00 37.19 4.79
445 446 4.571236 TCCCAAAGGATCCACGGA 57.429 55.556 15.82 9.65 37.19 4.69
453 454 6.907973 GTCGGTGACATTGATCCCAAAGGA 62.908 50.000 0.00 0.00 38.42 3.36
454 455 1.745087 CGGTGACATTGATCCCAAAGG 59.255 52.381 0.00 0.00 35.67 3.11
455 456 2.420022 GTCGGTGACATTGATCCCAAAG 59.580 50.000 0.00 0.00 35.67 2.77
456 457 2.224646 TGTCGGTGACATTGATCCCAAA 60.225 45.455 0.00 0.00 37.67 3.28
457 458 1.349357 TGTCGGTGACATTGATCCCAA 59.651 47.619 0.00 0.00 37.67 4.12
458 459 0.980423 TGTCGGTGACATTGATCCCA 59.020 50.000 0.00 0.00 37.67 4.37
459 460 1.066143 AGTGTCGGTGACATTGATCCC 60.066 52.381 2.62 0.00 44.63 3.85
460 461 2.386661 AGTGTCGGTGACATTGATCC 57.613 50.000 2.62 0.00 44.63 3.36
461 462 2.673368 GGAAGTGTCGGTGACATTGATC 59.327 50.000 2.62 0.00 44.63 2.92
462 463 2.615493 GGGAAGTGTCGGTGACATTGAT 60.615 50.000 2.62 0.00 44.63 2.57
463 464 1.270625 GGGAAGTGTCGGTGACATTGA 60.271 52.381 2.62 0.00 44.63 2.57
464 465 1.156736 GGGAAGTGTCGGTGACATTG 58.843 55.000 2.62 0.00 44.63 2.82
465 466 0.320421 CGGGAAGTGTCGGTGACATT 60.320 55.000 2.62 0.00 44.63 2.71
466 467 1.292223 CGGGAAGTGTCGGTGACAT 59.708 57.895 2.62 0.00 44.63 3.06
467 468 2.732016 CGGGAAGTGTCGGTGACA 59.268 61.111 0.00 0.00 40.50 3.58
468 469 2.710724 AAGCGGGAAGTGTCGGTGAC 62.711 60.000 0.00 0.00 37.19 3.67
469 470 2.504274 AAGCGGGAAGTGTCGGTGA 61.504 57.895 0.00 0.00 37.19 4.02
470 471 2.030562 AAGCGGGAAGTGTCGGTG 59.969 61.111 0.00 0.00 37.19 4.94
471 472 2.030562 CAAGCGGGAAGTGTCGGT 59.969 61.111 0.00 0.00 38.82 4.69
472 473 2.030562 ACAAGCGGGAAGTGTCGG 59.969 61.111 0.00 0.00 0.00 4.79
473 474 1.594293 ACACAAGCGGGAAGTGTCG 60.594 57.895 0.00 0.00 42.36 4.35
474 475 0.814010 ACACACAAGCGGGAAGTGTC 60.814 55.000 0.00 0.00 44.02 3.67
475 476 1.095228 CACACACAAGCGGGAAGTGT 61.095 55.000 0.00 0.00 46.54 3.55
476 477 1.095228 ACACACACAAGCGGGAAGTG 61.095 55.000 0.00 0.00 39.12 3.16
477 478 1.095228 CACACACACAAGCGGGAAGT 61.095 55.000 0.00 0.00 0.00 3.01
478 479 1.648720 CACACACACAAGCGGGAAG 59.351 57.895 0.00 0.00 0.00 3.46
479 480 1.821759 CCACACACACAAGCGGGAA 60.822 57.895 0.00 0.00 0.00 3.97
480 481 2.050836 ATCCACACACACAAGCGGGA 62.051 55.000 0.00 0.00 0.00 5.14
481 482 0.321210 TATCCACACACACAAGCGGG 60.321 55.000 0.00 0.00 0.00 6.13
482 483 0.796312 GTATCCACACACACAAGCGG 59.204 55.000 0.00 0.00 0.00 5.52
483 484 1.795768 AGTATCCACACACACAAGCG 58.204 50.000 0.00 0.00 0.00 4.68
484 485 3.926616 AGTAGTATCCACACACACAAGC 58.073 45.455 0.00 0.00 0.00 4.01
485 486 6.223852 AGAAAGTAGTATCCACACACACAAG 58.776 40.000 0.00 0.00 0.00 3.16
486 487 6.169557 AGAAAGTAGTATCCACACACACAA 57.830 37.500 0.00 0.00 0.00 3.33
487 488 5.801531 AGAAAGTAGTATCCACACACACA 57.198 39.130 0.00 0.00 0.00 3.72
488 489 5.989777 ACAAGAAAGTAGTATCCACACACAC 59.010 40.000 0.00 0.00 0.00 3.82
489 490 6.169557 ACAAGAAAGTAGTATCCACACACA 57.830 37.500 0.00 0.00 0.00 3.72
490 491 7.225931 TGAAACAAGAAAGTAGTATCCACACAC 59.774 37.037 0.00 0.00 0.00 3.82
491 492 7.276658 TGAAACAAGAAAGTAGTATCCACACA 58.723 34.615 0.00 0.00 0.00 3.72
492 493 7.724305 TGAAACAAGAAAGTAGTATCCACAC 57.276 36.000 0.00 0.00 0.00 3.82
493 494 8.783093 CAATGAAACAAGAAAGTAGTATCCACA 58.217 33.333 0.00 0.00 0.00 4.17
494 495 8.999431 TCAATGAAACAAGAAAGTAGTATCCAC 58.001 33.333 0.00 0.00 0.00 4.02
495 496 8.999431 GTCAATGAAACAAGAAAGTAGTATCCA 58.001 33.333 0.00 0.00 0.00 3.41
496 497 8.999431 TGTCAATGAAACAAGAAAGTAGTATCC 58.001 33.333 0.00 0.00 0.00 2.59
500 501 7.649306 GCATTGTCAATGAAACAAGAAAGTAGT 59.351 33.333 26.36 0.00 41.46 2.73
501 502 7.149080 CGCATTGTCAATGAAACAAGAAAGTAG 60.149 37.037 26.36 0.00 41.46 2.57
502 503 6.636447 CGCATTGTCAATGAAACAAGAAAGTA 59.364 34.615 26.36 0.00 41.46 2.24
503 504 5.459762 CGCATTGTCAATGAAACAAGAAAGT 59.540 36.000 26.36 0.00 41.46 2.66
504 505 5.107760 CCGCATTGTCAATGAAACAAGAAAG 60.108 40.000 26.36 6.08 41.46 2.62
505 506 4.744137 CCGCATTGTCAATGAAACAAGAAA 59.256 37.500 26.36 0.00 41.46 2.52
506 507 4.037327 TCCGCATTGTCAATGAAACAAGAA 59.963 37.500 26.36 2.65 41.46 2.52
507 508 3.567585 TCCGCATTGTCAATGAAACAAGA 59.432 39.130 26.36 11.17 41.46 3.02
508 509 3.899734 TCCGCATTGTCAATGAAACAAG 58.100 40.909 26.36 10.74 41.46 3.16
509 510 3.998099 TCCGCATTGTCAATGAAACAA 57.002 38.095 26.36 2.03 41.46 2.83
510 511 3.317711 AGTTCCGCATTGTCAATGAAACA 59.682 39.130 26.36 6.76 41.46 2.83
511 512 3.900941 AGTTCCGCATTGTCAATGAAAC 58.099 40.909 26.36 22.71 41.46 2.78
512 513 3.057596 GGAGTTCCGCATTGTCAATGAAA 60.058 43.478 26.36 14.64 41.46 2.69
513 514 2.487762 GGAGTTCCGCATTGTCAATGAA 59.512 45.455 26.36 11.10 41.46 2.57
514 515 2.083774 GGAGTTCCGCATTGTCAATGA 58.916 47.619 26.36 5.62 41.46 2.57
515 516 2.549633 GGAGTTCCGCATTGTCAATG 57.450 50.000 19.42 19.42 41.85 2.82
527 528 2.029964 TTGTCACGCCGGAGTTCC 59.970 61.111 8.62 2.20 0.00 3.62
528 529 0.949105 ATGTTGTCACGCCGGAGTTC 60.949 55.000 8.62 5.69 0.00 3.01
529 530 0.949105 GATGTTGTCACGCCGGAGTT 60.949 55.000 8.62 0.00 0.00 3.01
530 531 1.374252 GATGTTGTCACGCCGGAGT 60.374 57.895 5.05 4.71 0.00 3.85
531 532 2.444624 CGATGTTGTCACGCCGGAG 61.445 63.158 5.05 3.72 0.00 4.63
532 533 2.431771 CGATGTTGTCACGCCGGA 60.432 61.111 5.05 0.00 0.00 5.14
533 534 2.314647 AACGATGTTGTCACGCCGG 61.315 57.895 0.00 0.00 0.00 6.13
534 535 1.154672 CAACGATGTTGTCACGCCG 60.155 57.895 1.59 0.00 0.00 6.46
535 536 0.384230 CACAACGATGTTGTCACGCC 60.384 55.000 12.07 0.00 37.82 5.68
536 537 0.991770 GCACAACGATGTTGTCACGC 60.992 55.000 12.07 9.53 37.82 5.34
537 538 0.581529 AGCACAACGATGTTGTCACG 59.418 50.000 12.07 3.74 37.82 4.35
538 539 4.151070 CAATAGCACAACGATGTTGTCAC 58.849 43.478 12.07 8.01 37.82 3.67
539 540 3.364864 GCAATAGCACAACGATGTTGTCA 60.365 43.478 12.07 2.28 37.82 3.58
540 541 3.163594 GCAATAGCACAACGATGTTGTC 58.836 45.455 12.07 7.90 37.82 3.18
541 542 3.201726 GCAATAGCACAACGATGTTGT 57.798 42.857 9.39 9.39 37.82 3.32
554 555 1.202177 CCGTTCCACACATGCAATAGC 60.202 52.381 0.00 0.00 42.57 2.97
555 556 2.352651 CTCCGTTCCACACATGCAATAG 59.647 50.000 0.00 0.00 0.00 1.73
556 557 2.290008 ACTCCGTTCCACACATGCAATA 60.290 45.455 0.00 0.00 0.00 1.90
557 558 1.167851 CTCCGTTCCACACATGCAAT 58.832 50.000 0.00 0.00 0.00 3.56
558 559 0.179032 ACTCCGTTCCACACATGCAA 60.179 50.000 0.00 0.00 0.00 4.08
559 560 0.884259 CACTCCGTTCCACACATGCA 60.884 55.000 0.00 0.00 0.00 3.96
560 561 1.577328 CCACTCCGTTCCACACATGC 61.577 60.000 0.00 0.00 0.00 4.06
561 562 1.577328 GCCACTCCGTTCCACACATG 61.577 60.000 0.00 0.00 0.00 3.21
562 563 1.302511 GCCACTCCGTTCCACACAT 60.303 57.895 0.00 0.00 0.00 3.21
563 564 2.110213 GCCACTCCGTTCCACACA 59.890 61.111 0.00 0.00 0.00 3.72
564 565 1.961277 CTGCCACTCCGTTCCACAC 60.961 63.158 0.00 0.00 0.00 3.82
565 566 2.425592 CTGCCACTCCGTTCCACA 59.574 61.111 0.00 0.00 0.00 4.17
566 567 2.358737 CCTGCCACTCCGTTCCAC 60.359 66.667 0.00 0.00 0.00 4.02
567 568 2.525629 TCCTGCCACTCCGTTCCA 60.526 61.111 0.00 0.00 0.00 3.53
568 569 2.266055 CTCCTGCCACTCCGTTCC 59.734 66.667 0.00 0.00 0.00 3.62
569 570 1.617947 ATCCTCCTGCCACTCCGTTC 61.618 60.000 0.00 0.00 0.00 3.95
570 571 1.201429 AATCCTCCTGCCACTCCGTT 61.201 55.000 0.00 0.00 0.00 4.44
571 572 1.613630 AATCCTCCTGCCACTCCGT 60.614 57.895 0.00 0.00 0.00 4.69
572 573 1.144936 GAATCCTCCTGCCACTCCG 59.855 63.158 0.00 0.00 0.00 4.63
573 574 0.467804 GAGAATCCTCCTGCCACTCC 59.532 60.000 0.00 0.00 33.30 3.85
586 587 2.370189 ACGATCCAATCCTGGGAGAATC 59.630 50.000 0.00 0.00 43.71 2.52
587 588 2.412591 ACGATCCAATCCTGGGAGAAT 58.587 47.619 0.00 0.00 43.71 2.40
588 589 1.879575 ACGATCCAATCCTGGGAGAA 58.120 50.000 0.00 0.00 43.71 2.87
589 590 2.767644 TACGATCCAATCCTGGGAGA 57.232 50.000 0.00 0.00 43.71 3.71
590 591 3.169099 AGATACGATCCAATCCTGGGAG 58.831 50.000 0.00 0.00 43.71 4.30
591 592 3.260269 AGATACGATCCAATCCTGGGA 57.740 47.619 0.00 0.00 43.71 4.37
592 593 5.683876 ATAAGATACGATCCAATCCTGGG 57.316 43.478 0.00 0.00 43.71 4.45
593 594 9.672673 AAATAATAAGATACGATCCAATCCTGG 57.327 33.333 0.00 0.00 45.08 4.45
637 638 9.902196 CTGCATTAATGAAACATCAGCATTATA 57.098 29.630 19.73 0.00 35.25 0.98
638 639 8.635328 TCTGCATTAATGAAACATCAGCATTAT 58.365 29.630 19.73 0.00 35.25 1.28
639 640 7.998580 TCTGCATTAATGAAACATCAGCATTA 58.001 30.769 19.73 0.00 34.41 1.90
640 641 6.869695 TCTGCATTAATGAAACATCAGCATT 58.130 32.000 19.73 0.00 36.35 3.56
641 642 6.320418 TCTCTGCATTAATGAAACATCAGCAT 59.680 34.615 19.73 0.00 0.00 3.79
642 643 5.648960 TCTCTGCATTAATGAAACATCAGCA 59.351 36.000 19.73 5.48 0.00 4.41
643 644 6.127810 TCTCTGCATTAATGAAACATCAGC 57.872 37.500 19.73 0.72 0.00 4.26
644 645 9.020813 CAAATCTCTGCATTAATGAAACATCAG 57.979 33.333 19.73 14.32 0.00 2.90
645 646 8.525316 ACAAATCTCTGCATTAATGAAACATCA 58.475 29.630 19.73 5.43 0.00 3.07
646 647 8.922058 ACAAATCTCTGCATTAATGAAACATC 57.078 30.769 19.73 0.74 0.00 3.06
647 648 8.746530 AGACAAATCTCTGCATTAATGAAACAT 58.253 29.630 19.73 1.14 0.00 2.71
648 649 8.114331 AGACAAATCTCTGCATTAATGAAACA 57.886 30.769 19.73 6.83 0.00 2.83
649 650 8.976986 AAGACAAATCTCTGCATTAATGAAAC 57.023 30.769 19.73 2.21 32.34 2.78
650 651 9.985730 AAAAGACAAATCTCTGCATTAATGAAA 57.014 25.926 19.73 5.44 32.34 2.69
651 652 9.985730 AAAAAGACAAATCTCTGCATTAATGAA 57.014 25.926 19.73 7.90 32.34 2.57
657 658 9.252962 CTTGTTAAAAAGACAAATCTCTGCATT 57.747 29.630 0.00 0.00 36.64 3.56
658 659 8.632679 TCTTGTTAAAAAGACAAATCTCTGCAT 58.367 29.630 3.82 0.00 36.64 3.96
659 660 7.995289 TCTTGTTAAAAAGACAAATCTCTGCA 58.005 30.769 3.82 0.00 36.64 4.41
660 661 8.856490 TTCTTGTTAAAAAGACAAATCTCTGC 57.144 30.769 7.63 0.00 35.92 4.26
679 680 9.396022 TGATTTTACACTCTTTTCTCTTCTTGT 57.604 29.630 0.00 0.00 0.00 3.16
682 683 9.566432 ACATGATTTTACACTCTTTTCTCTTCT 57.434 29.630 0.00 0.00 0.00 2.85
725 726 9.836864 AATGCAGTTTATTTTTCTTTTCCTTCT 57.163 25.926 0.00 0.00 0.00 2.85
726 727 9.868389 CAATGCAGTTTATTTTTCTTTTCCTTC 57.132 29.630 0.00 0.00 0.00 3.46
727 728 9.394767 ACAATGCAGTTTATTTTTCTTTTCCTT 57.605 25.926 0.00 0.00 0.00 3.36
728 729 8.962884 ACAATGCAGTTTATTTTTCTTTTCCT 57.037 26.923 0.00 0.00 0.00 3.36
732 733 9.476202 GGAGTACAATGCAGTTTATTTTTCTTT 57.524 29.630 0.00 0.00 0.00 2.52
733 734 8.088365 GGGAGTACAATGCAGTTTATTTTTCTT 58.912 33.333 0.00 0.00 0.00 2.52
734 735 7.451566 AGGGAGTACAATGCAGTTTATTTTTCT 59.548 33.333 0.00 0.00 0.00 2.52
735 736 7.602753 AGGGAGTACAATGCAGTTTATTTTTC 58.397 34.615 0.00 0.00 0.00 2.29
736 737 7.309805 GGAGGGAGTACAATGCAGTTTATTTTT 60.310 37.037 0.00 0.00 0.00 1.94
737 738 6.152831 GGAGGGAGTACAATGCAGTTTATTTT 59.847 38.462 0.00 0.00 0.00 1.82
738 739 5.652452 GGAGGGAGTACAATGCAGTTTATTT 59.348 40.000 0.00 0.00 0.00 1.40
739 740 5.193679 GGAGGGAGTACAATGCAGTTTATT 58.806 41.667 0.00 0.00 0.00 1.40
740 741 4.683400 CGGAGGGAGTACAATGCAGTTTAT 60.683 45.833 0.00 0.00 0.00 1.40
741 742 3.369052 CGGAGGGAGTACAATGCAGTTTA 60.369 47.826 0.00 0.00 0.00 2.01
742 743 2.615493 CGGAGGGAGTACAATGCAGTTT 60.615 50.000 0.00 0.00 0.00 2.66
743 744 1.066143 CGGAGGGAGTACAATGCAGTT 60.066 52.381 0.00 0.00 0.00 3.16
744 745 0.537188 CGGAGGGAGTACAATGCAGT 59.463 55.000 0.00 0.00 0.00 4.40
745 746 0.537188 ACGGAGGGAGTACAATGCAG 59.463 55.000 0.00 0.00 0.00 4.41
746 747 1.855295 TACGGAGGGAGTACAATGCA 58.145 50.000 0.00 0.00 0.00 3.96
747 748 2.547826 GTTACGGAGGGAGTACAATGC 58.452 52.381 0.00 0.00 0.00 3.56
748 749 2.498481 TGGTTACGGAGGGAGTACAATG 59.502 50.000 0.00 0.00 0.00 2.82
749 750 2.823959 TGGTTACGGAGGGAGTACAAT 58.176 47.619 0.00 0.00 0.00 2.71
750 751 2.307496 TGGTTACGGAGGGAGTACAA 57.693 50.000 0.00 0.00 0.00 2.41
751 752 2.307496 TTGGTTACGGAGGGAGTACA 57.693 50.000 0.00 0.00 0.00 2.90
752 753 3.900966 ATTTGGTTACGGAGGGAGTAC 57.099 47.619 0.00 0.00 0.00 2.73
753 754 4.870636 TCTATTTGGTTACGGAGGGAGTA 58.129 43.478 0.00 0.00 0.00 2.59
754 755 3.705072 CTCTATTTGGTTACGGAGGGAGT 59.295 47.826 0.00 0.00 0.00 3.85
755 756 3.492829 GCTCTATTTGGTTACGGAGGGAG 60.493 52.174 0.00 0.00 0.00 4.30
756 757 2.433239 GCTCTATTTGGTTACGGAGGGA 59.567 50.000 0.00 0.00 0.00 4.20
757 758 2.802057 CGCTCTATTTGGTTACGGAGGG 60.802 54.545 0.00 0.00 0.00 4.30
758 759 2.159142 ACGCTCTATTTGGTTACGGAGG 60.159 50.000 0.00 0.00 0.00 4.30
759 760 3.160777 ACGCTCTATTTGGTTACGGAG 57.839 47.619 0.00 0.00 0.00 4.63
760 761 3.598019 AACGCTCTATTTGGTTACGGA 57.402 42.857 0.00 0.00 0.00 4.69
761 762 5.104374 TCTAAACGCTCTATTTGGTTACGG 58.896 41.667 0.00 0.00 0.00 4.02
762 763 6.474427 TGATCTAAACGCTCTATTTGGTTACG 59.526 38.462 0.00 0.00 0.00 3.18
763 764 7.491696 AGTGATCTAAACGCTCTATTTGGTTAC 59.508 37.037 0.00 0.00 0.00 2.50
764 765 7.553334 AGTGATCTAAACGCTCTATTTGGTTA 58.447 34.615 0.00 0.00 0.00 2.85
765 766 6.407202 AGTGATCTAAACGCTCTATTTGGTT 58.593 36.000 0.00 0.00 0.00 3.67
766 767 5.978814 AGTGATCTAAACGCTCTATTTGGT 58.021 37.500 0.00 0.00 0.00 3.67
767 768 6.910536 AAGTGATCTAAACGCTCTATTTGG 57.089 37.500 0.00 0.00 0.00 3.28
768 769 7.743104 ACAAAGTGATCTAAACGCTCTATTTG 58.257 34.615 0.00 0.00 0.00 2.32
769 770 7.907214 ACAAAGTGATCTAAACGCTCTATTT 57.093 32.000 0.00 0.00 0.00 1.40
770 771 7.819900 AGAACAAAGTGATCTAAACGCTCTATT 59.180 33.333 0.00 0.00 27.08 1.73
771 772 7.324178 AGAACAAAGTGATCTAAACGCTCTAT 58.676 34.615 0.00 0.00 27.08 1.98
772 773 6.688578 AGAACAAAGTGATCTAAACGCTCTA 58.311 36.000 0.00 0.00 27.08 2.43
773 774 5.542779 AGAACAAAGTGATCTAAACGCTCT 58.457 37.500 0.00 0.00 27.08 4.09
774 775 5.847670 AGAACAAAGTGATCTAAACGCTC 57.152 39.130 0.00 0.00 27.08 5.03
775 776 6.038271 ACAAAGAACAAAGTGATCTAAACGCT 59.962 34.615 0.00 0.00 28.93 5.07
776 777 6.199393 ACAAAGAACAAAGTGATCTAAACGC 58.801 36.000 0.00 0.00 28.93 4.84
777 778 8.614994 AAACAAAGAACAAAGTGATCTAAACG 57.385 30.769 0.00 0.00 28.93 3.60
781 782 9.607988 TCTGTAAACAAAGAACAAAGTGATCTA 57.392 29.630 0.00 0.00 28.93 1.98
782 783 8.506168 TCTGTAAACAAAGAACAAAGTGATCT 57.494 30.769 0.00 0.00 30.32 2.75
783 784 7.857885 CCTCTGTAAACAAAGAACAAAGTGATC 59.142 37.037 0.00 0.00 0.00 2.92
784 785 7.201821 CCCTCTGTAAACAAAGAACAAAGTGAT 60.202 37.037 0.00 0.00 0.00 3.06
785 786 6.094881 CCCTCTGTAAACAAAGAACAAAGTGA 59.905 38.462 0.00 0.00 0.00 3.41
786 787 6.094881 TCCCTCTGTAAACAAAGAACAAAGTG 59.905 38.462 0.00 0.00 0.00 3.16
787 788 6.184789 TCCCTCTGTAAACAAAGAACAAAGT 58.815 36.000 0.00 0.00 0.00 2.66
788 789 6.318900 ACTCCCTCTGTAAACAAAGAACAAAG 59.681 38.462 0.00 0.00 0.00 2.77
789 790 6.184789 ACTCCCTCTGTAAACAAAGAACAAA 58.815 36.000 0.00 0.00 0.00 2.83
790 791 5.751586 ACTCCCTCTGTAAACAAAGAACAA 58.248 37.500 0.00 0.00 0.00 2.83
791 792 5.367945 ACTCCCTCTGTAAACAAAGAACA 57.632 39.130 0.00 0.00 0.00 3.18
792 793 7.981102 AATACTCCCTCTGTAAACAAAGAAC 57.019 36.000 0.00 0.00 0.00 3.01
793 794 8.846211 CAAAATACTCCCTCTGTAAACAAAGAA 58.154 33.333 0.00 0.00 0.00 2.52
794 795 7.447238 CCAAAATACTCCCTCTGTAAACAAAGA 59.553 37.037 0.00 0.00 0.00 2.52
795 796 7.230712 ACCAAAATACTCCCTCTGTAAACAAAG 59.769 37.037 0.00 0.00 0.00 2.77
796 797 7.013846 CACCAAAATACTCCCTCTGTAAACAAA 59.986 37.037 0.00 0.00 0.00 2.83
797 798 6.488683 CACCAAAATACTCCCTCTGTAAACAA 59.511 38.462 0.00 0.00 0.00 2.83
798 799 6.001460 CACCAAAATACTCCCTCTGTAAACA 58.999 40.000 0.00 0.00 0.00 2.83
799 800 5.106277 GCACCAAAATACTCCCTCTGTAAAC 60.106 44.000 0.00 0.00 0.00 2.01
800 801 5.007682 GCACCAAAATACTCCCTCTGTAAA 58.992 41.667 0.00 0.00 0.00 2.01
801 802 4.566907 GGCACCAAAATACTCCCTCTGTAA 60.567 45.833 0.00 0.00 0.00 2.41
802 803 3.054655 GGCACCAAAATACTCCCTCTGTA 60.055 47.826 0.00 0.00 0.00 2.74
803 804 2.290960 GGCACCAAAATACTCCCTCTGT 60.291 50.000 0.00 0.00 0.00 3.41
804 805 2.369394 GGCACCAAAATACTCCCTCTG 58.631 52.381 0.00 0.00 0.00 3.35
805 806 1.065418 CGGCACCAAAATACTCCCTCT 60.065 52.381 0.00 0.00 0.00 3.69
806 807 1.379527 CGGCACCAAAATACTCCCTC 58.620 55.000 0.00 0.00 0.00 4.30
807 808 0.034477 CCGGCACCAAAATACTCCCT 60.034 55.000 0.00 0.00 0.00 4.20
808 809 0.323087 ACCGGCACCAAAATACTCCC 60.323 55.000 0.00 0.00 0.00 4.30
809 810 0.808755 CACCGGCACCAAAATACTCC 59.191 55.000 0.00 0.00 0.00 3.85
810 811 0.170339 GCACCGGCACCAAAATACTC 59.830 55.000 0.00 0.00 40.72 2.59
811 812 1.248101 GGCACCGGCACCAAAATACT 61.248 55.000 0.00 0.00 43.71 2.12
812 813 1.214325 GGCACCGGCACCAAAATAC 59.786 57.895 0.00 0.00 43.71 1.89
813 814 0.827925 TTGGCACCGGCACCAAAATA 60.828 50.000 22.88 4.08 42.87 1.40
814 815 2.098426 CTTGGCACCGGCACCAAAAT 62.098 55.000 24.49 0.00 45.03 1.82
815 816 2.759973 TTGGCACCGGCACCAAAA 60.760 55.556 22.88 5.11 42.87 2.44
985 994 4.193334 CATCGTCGCCGGCTCTCA 62.193 66.667 26.68 6.13 33.95 3.27
1140 1149 1.450312 CTCCATGGCCTTGTCGACC 60.450 63.158 14.12 0.00 0.00 4.79
1365 1378 2.643551 ACAACAAGATAAGGGCATCGG 58.356 47.619 0.00 0.00 0.00 4.18
1475 1489 3.581024 ATCTTGCGGTAGTCGTTGTAA 57.419 42.857 0.00 0.00 41.72 2.41
1548 1563 6.260936 GCTACCAGCATAAGTAACAATGTGAT 59.739 38.462 0.00 0.00 41.89 3.06
1552 1567 6.073548 GCTAGCTACCAGCATAAGTAACAATG 60.074 42.308 7.70 0.00 45.56 2.82
1933 2080 6.431234 GTGTTTAACAGAGAGGGAACAATCAT 59.569 38.462 0.00 0.00 0.00 2.45
1967 2114 7.383687 AGTTGAGTCATCTATTTTGTAACGGA 58.616 34.615 1.70 0.00 0.00 4.69
1973 2120 9.561069 AGTACAAAGTTGAGTCATCTATTTTGT 57.439 29.630 17.58 17.58 45.59 2.83
1982 2129 8.732746 ACAAAGTTAGTACAAAGTTGAGTCAT 57.267 30.769 0.00 0.00 0.00 3.06
1983 2130 9.090692 GTACAAAGTTAGTACAAAGTTGAGTCA 57.909 33.333 0.00 0.00 41.08 3.41
1984 2131 9.310716 AGTACAAAGTTAGTACAAAGTTGAGTC 57.689 33.333 6.30 0.00 43.24 3.36
2017 2164 9.003658 CCAAAATAGATGACTCAACTTTGTACT 57.996 33.333 0.00 0.00 0.00 2.73
2019 2166 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
2020 2167 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
2028 2175 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
2031 2178 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
2032 2179 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
2033 2180 3.433740 GCTCCCTCCGTTCCAAAATAGAT 60.434 47.826 0.00 0.00 0.00 1.98
2035 2182 2.289565 GCTCCCTCCGTTCCAAAATAG 58.710 52.381 0.00 0.00 0.00 1.73
2038 2185 0.250727 CTGCTCCCTCCGTTCCAAAA 60.251 55.000 0.00 0.00 0.00 2.44
2039 2186 1.374947 CTGCTCCCTCCGTTCCAAA 59.625 57.895 0.00 0.00 0.00 3.28
2040 2187 1.415672 AACTGCTCCCTCCGTTCCAA 61.416 55.000 0.00 0.00 0.00 3.53
2041 2188 1.841556 AACTGCTCCCTCCGTTCCA 60.842 57.895 0.00 0.00 0.00 3.53
2042 2189 1.376037 CAACTGCTCCCTCCGTTCC 60.376 63.158 0.00 0.00 0.00 3.62
2043 2190 0.670854 GACAACTGCTCCCTCCGTTC 60.671 60.000 0.00 0.00 0.00 3.95
2044 2191 1.371558 GACAACTGCTCCCTCCGTT 59.628 57.895 0.00 0.00 0.00 4.44
2045 2192 1.194781 ATGACAACTGCTCCCTCCGT 61.195 55.000 0.00 0.00 0.00 4.69
2046 2193 0.742281 CATGACAACTGCTCCCTCCG 60.742 60.000 0.00 0.00 0.00 4.63
2047 2194 0.326264 ACATGACAACTGCTCCCTCC 59.674 55.000 0.00 0.00 0.00 4.30
2048 2195 1.271054 ACACATGACAACTGCTCCCTC 60.271 52.381 0.00 0.00 0.00 4.30
2049 2196 0.767375 ACACATGACAACTGCTCCCT 59.233 50.000 0.00 0.00 0.00 4.20
2050 2197 0.877071 CACACATGACAACTGCTCCC 59.123 55.000 0.00 0.00 0.00 4.30
2051 2198 1.597742 ACACACATGACAACTGCTCC 58.402 50.000 0.00 0.00 0.00 4.70
2052 2199 3.065233 TGAAACACACATGACAACTGCTC 59.935 43.478 0.00 0.00 0.00 4.26
2053 2200 3.016031 TGAAACACACATGACAACTGCT 58.984 40.909 0.00 0.00 0.00 4.24
2054 2201 3.181497 ACTGAAACACACATGACAACTGC 60.181 43.478 0.00 0.00 0.00 4.40
2055 2202 4.621068 ACTGAAACACACATGACAACTG 57.379 40.909 0.00 0.00 0.00 3.16
2056 2203 6.942532 ATTACTGAAACACACATGACAACT 57.057 33.333 0.00 0.00 0.00 3.16
2113 2344 9.819267 AACCTGTATTTAAGATTACTGACTAGC 57.181 33.333 0.00 0.00 0.00 3.42
2261 2494 4.233053 TCCTCCTTATCTTCCTCCTCTTCA 59.767 45.833 0.00 0.00 0.00 3.02
2362 2595 3.191371 CACCTCTGGTCAACAAATTAGGC 59.809 47.826 0.00 0.00 31.02 3.93
2448 2681 1.008449 CTGTCCCTCTCCCTTTCCCTA 59.992 57.143 0.00 0.00 0.00 3.53
2525 2758 7.556844 AGATAAGTCGTTGACAAACCATCTAT 58.443 34.615 0.00 0.00 34.60 1.98
2533 2766 9.268268 AGAAACAATAGATAAGTCGTTGACAAA 57.732 29.630 0.00 0.00 34.60 2.83
2685 2919 9.626045 CCTTAACCAATAAGAAAACAGAACATC 57.374 33.333 0.00 0.00 43.16 3.06
2713 2947 6.269077 TCAGTGAAACATAGGTTACTTCTGGA 59.731 38.462 0.00 0.00 41.43 3.86
2758 2992 2.683968 TGTCTTAAGCATGACGTCACC 58.316 47.619 22.71 14.97 0.00 4.02
2872 3109 7.307396 CCATGTATGAAAAGGATAGCTTACACG 60.307 40.741 0.00 0.00 0.00 4.49
2918 3155 3.142174 GCTCTTACTCTGCTTGTTGGTT 58.858 45.455 0.00 0.00 0.00 3.67
2933 3170 1.604378 GCTGCCCCAGAAGCTCTTA 59.396 57.895 0.00 0.00 36.47 2.10
3045 3284 7.283625 ACAGCTTCCAGTACAATCTCTATAG 57.716 40.000 0.00 0.00 0.00 1.31
3105 3344 4.623171 GCCATGGCAGTAAGTACTAAGTGT 60.623 45.833 32.08 0.00 41.49 3.55
3276 3515 9.807649 AGATAGCAAATTTCAATAAGCGAAAAT 57.192 25.926 0.00 0.00 36.06 1.82
3474 3713 3.625764 GGCACCGCTACAAAATTCTATGA 59.374 43.478 0.00 0.00 0.00 2.15
3475 3714 3.376859 TGGCACCGCTACAAAATTCTATG 59.623 43.478 0.00 0.00 0.00 2.23
3650 3889 3.183373 GTGACTTGAACTCTCAAAGAGCG 59.817 47.826 3.90 0.00 46.12 5.03
3746 3988 4.507756 GCTTCGCATGACATCACTAATACA 59.492 41.667 0.00 0.00 0.00 2.29
3747 3989 4.084328 GGCTTCGCATGACATCACTAATAC 60.084 45.833 0.00 0.00 0.00 1.89
3765 4007 9.768662 ATATATTTTCCAAATTGATGTGGCTTC 57.231 29.630 0.00 0.00 34.68 3.86
3978 4220 8.780846 TTTTCACTCTAGTGTAGTGTCAAAAA 57.219 30.769 9.81 6.88 45.76 1.94
3979 4221 8.780846 TTTTTCACTCTAGTGTAGTGTCAAAA 57.219 30.769 9.81 11.56 45.76 2.44
4001 4243 5.122711 CCGTCCCATAATGTAAGACGTTTTT 59.877 40.000 9.63 0.00 46.62 1.94
4002 4244 4.632688 CCGTCCCATAATGTAAGACGTTTT 59.367 41.667 9.63 0.00 46.62 2.43
4003 4245 4.081531 TCCGTCCCATAATGTAAGACGTTT 60.082 41.667 9.63 0.00 46.62 3.60
4004 4246 3.448301 TCCGTCCCATAATGTAAGACGTT 59.552 43.478 9.63 0.00 46.62 3.99
4005 4247 3.025978 TCCGTCCCATAATGTAAGACGT 58.974 45.455 9.63 0.00 46.62 4.34
4007 4249 3.244112 CCCTCCGTCCCATAATGTAAGAC 60.244 52.174 0.00 0.00 0.00 3.01
4008 4250 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
4009 4251 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
4010 4252 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
4011 4253 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
4012 4254 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
4013 4255 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
4014 4256 2.179424 ACTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
4015 4257 1.572415 ACTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
4016 4258 1.229131 ACTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
4017 4259 0.338814 AACTACTCCCTCCGTCCCAT 59.661 55.000 0.00 0.00 0.00 4.00
4018 4260 0.613853 CAACTACTCCCTCCGTCCCA 60.614 60.000 0.00 0.00 0.00 4.37
4019 4261 0.614134 ACAACTACTCCCTCCGTCCC 60.614 60.000 0.00 0.00 0.00 4.46
4020 4262 1.264295 AACAACTACTCCCTCCGTCC 58.736 55.000 0.00 0.00 0.00 4.79
4021 4263 4.525912 TTAAACAACTACTCCCTCCGTC 57.474 45.455 0.00 0.00 0.00 4.79
4022 4264 4.081254 GGATTAAACAACTACTCCCTCCGT 60.081 45.833 0.00 0.00 0.00 4.69
4023 4265 4.161754 AGGATTAAACAACTACTCCCTCCG 59.838 45.833 0.00 0.00 0.00 4.63
4024 4266 5.429130 CAGGATTAAACAACTACTCCCTCC 58.571 45.833 0.00 0.00 0.00 4.30
4025 4267 5.189145 TCCAGGATTAAACAACTACTCCCTC 59.811 44.000 0.00 0.00 0.00 4.30
4026 4268 5.098663 TCCAGGATTAAACAACTACTCCCT 58.901 41.667 0.00 0.00 0.00 4.20
4027 4269 5.189145 TCTCCAGGATTAAACAACTACTCCC 59.811 44.000 0.00 0.00 0.00 4.30
4028 4270 6.295719 TCTCCAGGATTAAACAACTACTCC 57.704 41.667 0.00 0.00 0.00 3.85
4029 4271 7.556844 TGATCTCCAGGATTAAACAACTACTC 58.443 38.462 0.00 0.00 34.33 2.59
4030 4272 7.496346 TGATCTCCAGGATTAAACAACTACT 57.504 36.000 0.00 0.00 34.33 2.57
4031 4273 9.262358 GTATGATCTCCAGGATTAAACAACTAC 57.738 37.037 0.00 0.00 34.33 2.73
4437 4784 9.377312 TCCTTAAAAAGTGAGTTTCCAAAAATG 57.623 29.630 0.00 0.00 0.00 2.32
4532 4880 4.080919 ACAGCTAATGAACATGACCAGCTA 60.081 41.667 0.00 0.00 36.19 3.32
4719 5067 2.642139 TACGCAAGCACCTACAGTAC 57.358 50.000 0.00 0.00 45.62 2.73
4917 5265 5.104109 TCCCCATACCTATGAAAAACCTCTG 60.104 44.000 0.00 0.00 35.75 3.35
4991 5339 3.820467 CAGCACCTCAAAACCATAGACAA 59.180 43.478 0.00 0.00 0.00 3.18
5150 5498 2.048444 AGGCACAGGCAGTCATTATG 57.952 50.000 0.00 0.00 43.71 1.90
5220 5568 2.752030 CCTCTTCCATAGTCCCTGTCA 58.248 52.381 0.00 0.00 0.00 3.58
5316 5664 3.114065 GTTGTAATCGTCATCTCGGGTC 58.886 50.000 0.00 0.00 0.00 4.46
5318 5666 2.470821 GGTTGTAATCGTCATCTCGGG 58.529 52.381 0.00 0.00 0.00 5.14
5331 5679 1.399440 CGGTCTCGATCTCGGTTGTAA 59.601 52.381 0.00 0.00 40.29 2.41
5536 5884 9.119418 CTTCTCTTTCTTTTCCTTTCTCTTCTT 57.881 33.333 0.00 0.00 0.00 2.52
5713 6061 7.928908 TGCAGTGTTAAAAGAAAAATGCTAG 57.071 32.000 2.10 0.00 32.53 3.42
5753 6101 3.078837 ACCGCCAAAGTTACATTACAGG 58.921 45.455 0.00 0.00 0.00 4.00
5779 6127 1.280421 AGGTAGAGCCAGAAAAGCAGG 59.720 52.381 0.00 0.00 40.61 4.85
5996 6353 8.579850 AATTGTATGACACAGTTGACCAATAT 57.420 30.769 0.00 0.00 38.72 1.28
6026 6383 5.277250 GCTAAGTATGAAGCAATCACTGAGC 60.277 44.000 0.00 0.00 41.93 4.26
6031 6412 5.582269 TGTCAGCTAAGTATGAAGCAATCAC 59.418 40.000 0.00 0.00 41.93 3.06
6092 6473 8.080417 GGCAACATCGTTTATAGTAGATCACTA 58.920 37.037 0.00 1.54 43.89 2.74
6093 6474 6.924060 GGCAACATCGTTTATAGTAGATCACT 59.076 38.462 0.00 0.00 41.62 3.41
6094 6475 6.129168 CGGCAACATCGTTTATAGTAGATCAC 60.129 42.308 0.00 0.00 0.00 3.06
6096 6477 6.147581 TCGGCAACATCGTTTATAGTAGATC 58.852 40.000 0.00 0.00 0.00 2.75
6098 6479 5.503662 TCGGCAACATCGTTTATAGTAGA 57.496 39.130 0.00 0.00 0.00 2.59
6099 6480 6.419710 TCAATCGGCAACATCGTTTATAGTAG 59.580 38.462 0.00 0.00 0.00 2.57
6100 6481 6.274579 TCAATCGGCAACATCGTTTATAGTA 58.725 36.000 0.00 0.00 0.00 1.82
6102 6483 5.651172 TCAATCGGCAACATCGTTTATAG 57.349 39.130 0.00 0.00 0.00 1.31
6103 6484 6.424176 TTTCAATCGGCAACATCGTTTATA 57.576 33.333 0.00 0.00 0.00 0.98
6104 6485 4.955925 TTCAATCGGCAACATCGTTTAT 57.044 36.364 0.00 0.00 0.00 1.40
6107 6488 3.243234 TGTTTTCAATCGGCAACATCGTT 60.243 39.130 0.00 0.00 0.00 3.85
6109 6490 2.927429 TGTTTTCAATCGGCAACATCG 58.073 42.857 0.00 0.00 0.00 3.84
6110 6491 4.685628 ACATTGTTTTCAATCGGCAACATC 59.314 37.500 0.00 0.00 46.18 3.06
6114 6611 4.985409 GGTTACATTGTTTTCAATCGGCAA 59.015 37.500 0.00 0.00 46.18 4.52
6172 6670 5.867903 TCCACCACATTTTCATTTTCTGT 57.132 34.783 0.00 0.00 0.00 3.41
6283 6782 3.407424 TGCTGTGTTGCTCAAGACTAT 57.593 42.857 10.54 0.00 35.81 2.12
6287 6786 2.148768 CAGATGCTGTGTTGCTCAAGA 58.851 47.619 0.00 0.00 0.00 3.02
6306 6805 0.736636 CGCCGACCTACTGTGATACA 59.263 55.000 0.00 0.00 0.00 2.29
6317 6816 3.185155 CGTTCTCTACGCCGACCT 58.815 61.111 0.00 0.00 44.26 3.85
6334 6833 1.080434 GTGGCGTCTGAGTCTGTCC 60.080 63.158 0.00 0.00 0.00 4.02
6339 6838 0.455295 CGAAGAGTGGCGTCTGAGTC 60.455 60.000 0.00 0.00 0.00 3.36
6340 6839 0.889638 TCGAAGAGTGGCGTCTGAGT 60.890 55.000 0.00 0.00 0.00 3.41
6341 6840 0.453793 ATCGAAGAGTGGCGTCTGAG 59.546 55.000 0.00 0.00 43.63 3.35
6342 6841 0.888619 AATCGAAGAGTGGCGTCTGA 59.111 50.000 0.00 0.00 43.63 3.27
6343 6842 2.159366 AGTAATCGAAGAGTGGCGTCTG 60.159 50.000 0.00 0.00 43.63 3.51
6344 6843 2.093106 AGTAATCGAAGAGTGGCGTCT 58.907 47.619 0.00 0.00 43.63 4.18
6491 6990 5.046520 CAGATGATGCTCCCTGATATCTCAA 60.047 44.000 3.98 0.00 0.00 3.02
6564 7063 1.153756 CTTTGGCCTTGTCCTGGGT 59.846 57.895 3.32 0.00 0.00 4.51
6576 7075 2.346541 GCAGAGGCTTCCCTTTGGC 61.347 63.158 0.00 0.00 43.12 4.52
6633 7132 3.382111 CAGGACTGGACGCCTCTT 58.618 61.111 0.00 0.00 30.41 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.