Multiple sequence alignment - TraesCS5A01G159000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G159000 chr5A 100.000 3110 0 0 1 3110 338926763 338923654 0.000000e+00 5744
1 TraesCS5A01G159000 chr5A 89.520 229 10 6 2891 3110 37633604 37633381 8.490000e-71 278
2 TraesCS5A01G159000 chr5A 91.089 101 8 1 2792 2892 3620560 3620659 5.410000e-28 135
3 TraesCS5A01G159000 chr5D 95.819 2344 80 11 2 2331 255597762 255595423 0.000000e+00 3770
4 TraesCS5A01G159000 chr5D 92.244 722 45 6 2 713 528874643 528875363 0.000000e+00 1013
5 TraesCS5A01G159000 chr5D 95.072 345 14 2 2373 2716 255595423 255595081 9.810000e-150 540
6 TraesCS5A01G159000 chr5B 95.772 1916 64 12 810 2716 289259297 289257390 0.000000e+00 3073
7 TraesCS5A01G159000 chr6B 91.425 723 43 13 2 713 640672565 640671851 0.000000e+00 974
8 TraesCS5A01G159000 chr6B 90.476 735 48 15 2 725 300963436 300964159 0.000000e+00 950
9 TraesCS5A01G159000 chr6B 89.382 631 56 6 2 623 367972336 367971708 0.000000e+00 784
10 TraesCS5A01G159000 chr6B 92.694 219 12 4 2894 3110 65161206 65160990 2.330000e-81 313
11 TraesCS5A01G159000 chr6A 90.884 724 52 7 2 713 569966549 569965828 0.000000e+00 959
12 TraesCS5A01G159000 chr6A 93.407 91 6 0 2802 2892 359016598 359016508 5.410000e-28 135
13 TraesCS5A01G159000 chr7B 90.582 722 56 7 2 714 54786523 54787241 0.000000e+00 946
14 TraesCS5A01G159000 chr7B 90.000 110 11 0 2714 2823 570239512 570239403 3.230000e-30 143
15 TraesCS5A01G159000 chr6D 93.226 620 37 4 3 619 403036587 403037204 0.000000e+00 907
16 TraesCS5A01G159000 chr6D 92.558 215 12 1 2894 3108 464929196 464929406 3.900000e-79 305
17 TraesCS5A01G159000 chr6D 89.216 102 9 2 2793 2893 2103736 2103636 3.260000e-25 126
18 TraesCS5A01G159000 chr4A 84.394 660 65 17 93 716 679261806 679261149 5.700000e-172 614
19 TraesCS5A01G159000 chr4A 92.473 93 6 1 2800 2892 207366888 207366979 7.000000e-27 132
20 TraesCS5A01G159000 chr2A 84.569 499 62 5 1188 1683 713366849 713366363 6.030000e-132 481
21 TraesCS5A01G159000 chr2A 90.722 194 16 1 974 1165 713367032 713366839 1.110000e-64 257
22 TraesCS5A01G159000 chr7D 91.000 300 22 3 2 298 177874739 177874442 1.740000e-107 399
23 TraesCS5A01G159000 chr7D 93.333 90 4 2 2803 2891 271541859 271541771 7.000000e-27 132
24 TraesCS5A01G159000 chr3B 92.093 215 17 0 2896 3110 391478992 391479206 1.400000e-78 303
25 TraesCS5A01G159000 chr3B 89.352 216 15 6 2896 3110 535516956 535516748 6.610000e-67 265
26 TraesCS5A01G159000 chr3B 89.474 114 10 1 2710 2823 483570954 483571065 3.230000e-30 143
27 TraesCS5A01G159000 chr3B 89.474 114 10 1 2710 2823 483971856 483971967 3.230000e-30 143
28 TraesCS5A01G159000 chr2B 92.611 203 15 0 2896 3098 132498497 132498699 3.030000e-75 292
29 TraesCS5A01G159000 chr2B 90.265 113 10 1 2710 2822 154903824 154903713 2.500000e-31 147
30 TraesCS5A01G159000 chr2B 93.407 91 6 0 2799 2889 364949035 364949125 5.410000e-28 135
31 TraesCS5A01G159000 chr1A 89.767 215 22 0 2896 3110 463830475 463830689 3.060000e-70 276
32 TraesCS5A01G159000 chr1A 91.753 97 8 0 2794 2890 418055801 418055897 5.410000e-28 135
33 TraesCS5A01G159000 chr4B 89.083 229 11 8 2891 3110 381399109 381399332 3.950000e-69 272
34 TraesCS5A01G159000 chr4B 90.955 199 13 3 2912 3110 622758981 622759174 2.380000e-66 263
35 TraesCS5A01G159000 chr4B 90.179 112 10 1 2712 2822 126323865 126323976 8.990000e-31 145
36 TraesCS5A01G159000 chr3D 86.580 231 11 11 2894 3110 81687981 81688205 1.440000e-58 237
37 TraesCS5A01G159000 chr7A 93.519 108 6 1 2715 2822 454048871 454048977 3.210000e-35 159
38 TraesCS5A01G159000 chr2D 92.661 109 7 1 2710 2818 612725115 612725222 4.150000e-34 156
39 TraesCS5A01G159000 chr1B 89.655 116 8 4 2711 2823 428076190 428076076 8.990000e-31 145
40 TraesCS5A01G159000 chr1B 91.837 98 6 2 2795 2891 149606476 149606572 5.410000e-28 135
41 TraesCS5A01G159000 chrUn 88.596 114 11 1 2710 2823 361091918 361091807 1.500000e-28 137
42 TraesCS5A01G159000 chr1D 91.753 97 4 4 2798 2891 407351087 407351182 7.000000e-27 132


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G159000 chr5A 338923654 338926763 3109 True 5744 5744 100.0000 1 3110 1 chr5A.!!$R2 3109
1 TraesCS5A01G159000 chr5D 255595081 255597762 2681 True 2155 3770 95.4455 2 2716 2 chr5D.!!$R1 2714
2 TraesCS5A01G159000 chr5D 528874643 528875363 720 False 1013 1013 92.2440 2 713 1 chr5D.!!$F1 711
3 TraesCS5A01G159000 chr5B 289257390 289259297 1907 True 3073 3073 95.7720 810 2716 1 chr5B.!!$R1 1906
4 TraesCS5A01G159000 chr6B 640671851 640672565 714 True 974 974 91.4250 2 713 1 chr6B.!!$R3 711
5 TraesCS5A01G159000 chr6B 300963436 300964159 723 False 950 950 90.4760 2 725 1 chr6B.!!$F1 723
6 TraesCS5A01G159000 chr6B 367971708 367972336 628 True 784 784 89.3820 2 623 1 chr6B.!!$R2 621
7 TraesCS5A01G159000 chr6A 569965828 569966549 721 True 959 959 90.8840 2 713 1 chr6A.!!$R2 711
8 TraesCS5A01G159000 chr7B 54786523 54787241 718 False 946 946 90.5820 2 714 1 chr7B.!!$F1 712
9 TraesCS5A01G159000 chr6D 403036587 403037204 617 False 907 907 93.2260 3 619 1 chr6D.!!$F1 616
10 TraesCS5A01G159000 chr4A 679261149 679261806 657 True 614 614 84.3940 93 716 1 chr4A.!!$R1 623
11 TraesCS5A01G159000 chr2A 713366363 713367032 669 True 369 481 87.6455 974 1683 2 chr2A.!!$R1 709

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
641 694 0.381801 CCCCATTCTTTCGATTGGCG 59.618 55.000 0.00 0.0 38.67 5.69 F
643 696 0.451383 CCATTCTTTCGATTGGCGCA 59.549 50.000 10.83 0.0 40.61 6.09 F
1347 1410 1.003355 CCGTGTTGGCCATCTCACT 60.003 57.895 23.80 0.0 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1914 1980 0.681887 TCCGGTGATGACGCCTCTTA 60.682 55.000 0.0 0.0 43.77 2.10 R
1998 2064 1.346068 GACCTCTTGTGGCTCTTCTGT 59.654 52.381 0.0 0.0 0.00 3.41 R
2883 2956 0.108329 ACGCACAGGGCTACATACAC 60.108 55.000 0.0 0.0 41.67 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
134 140 8.477419 TGAAACTTCAGGATATTGTTTTCCTT 57.523 30.769 0.00 0.00 40.44 3.36
635 688 6.740944 TCTATTATGTCCCCATTCTTTCGA 57.259 37.500 0.00 0.00 32.29 3.71
641 694 0.381801 CCCCATTCTTTCGATTGGCG 59.618 55.000 0.00 0.00 38.67 5.69
643 696 0.451383 CCATTCTTTCGATTGGCGCA 59.549 50.000 10.83 0.00 40.61 6.09
771 827 9.118300 CTTATTTCTGCTCATTTCCTATGAACT 57.882 33.333 0.00 0.00 0.00 3.01
786 842 3.806949 TGAACTGAACTGGGCCTAAAT 57.193 42.857 4.53 0.00 0.00 1.40
992 1052 1.691689 CCTAACCCTAACCCCGGCT 60.692 63.158 0.00 0.00 0.00 5.52
1347 1410 1.003355 CCGTGTTGGCCATCTCACT 60.003 57.895 23.80 0.00 0.00 3.41
1542 1605 2.762887 TGACAGCGATTCCTCTGATTCT 59.237 45.455 7.37 0.00 34.57 2.40
1725 1791 1.684450 GATTCGGAGGAGGAGAGAACC 59.316 57.143 0.00 0.00 0.00 3.62
1808 1874 1.554160 CTCTGACAGGAAGAGGCACAT 59.446 52.381 1.81 0.00 38.00 3.21
1892 1958 3.135161 TGATGAATCTGGAGGGGAAGA 57.865 47.619 0.00 0.00 0.00 2.87
1962 2028 2.179427 TCTGGTAGTGACAGTGATGGG 58.821 52.381 0.00 0.00 37.25 4.00
2144 2210 3.454375 AGCGGTAAATTGTACTCATCGG 58.546 45.455 0.00 0.00 0.00 4.18
2573 2644 1.630223 TCCTGCAAATTCATGTGCCA 58.370 45.000 3.81 0.00 40.14 4.92
2584 2655 3.436700 TCATGTGCCATAGACACGTAG 57.563 47.619 0.00 0.00 41.03 3.51
2603 2674 5.048782 ACGTAGTAAAATCGGTACTGACACA 60.049 40.000 6.52 0.00 41.94 3.72
2604 2675 6.032094 CGTAGTAAAATCGGTACTGACACAT 58.968 40.000 6.52 0.00 33.80 3.21
2720 2793 8.815565 TGAAGATGATGATCTATACTACTCCC 57.184 38.462 0.00 0.00 38.03 4.30
2721 2794 8.619281 TGAAGATGATGATCTATACTACTCCCT 58.381 37.037 0.00 0.00 38.03 4.20
2722 2795 9.474313 GAAGATGATGATCTATACTACTCCCTT 57.526 37.037 0.00 0.00 38.03 3.95
2723 2796 9.836179 AAGATGATGATCTATACTACTCCCTTT 57.164 33.333 0.00 0.00 38.03 3.11
2724 2797 9.253832 AGATGATGATCTATACTACTCCCTTTG 57.746 37.037 0.00 0.00 37.15 2.77
2725 2798 8.964533 ATGATGATCTATACTACTCCCTTTGT 57.035 34.615 0.00 0.00 0.00 2.83
2726 2799 8.783660 TGATGATCTATACTACTCCCTTTGTT 57.216 34.615 0.00 0.00 0.00 2.83
2727 2800 9.213777 TGATGATCTATACTACTCCCTTTGTTT 57.786 33.333 0.00 0.00 0.00 2.83
2728 2801 9.699703 GATGATCTATACTACTCCCTTTGTTTC 57.300 37.037 0.00 0.00 0.00 2.78
2729 2802 8.840200 TGATCTATACTACTCCCTTTGTTTCT 57.160 34.615 0.00 0.00 0.00 2.52
2730 2803 9.931698 TGATCTATACTACTCCCTTTGTTTCTA 57.068 33.333 0.00 0.00 0.00 2.10
2761 2834 7.693969 AGTCTTTTTAGAGATTCCAACATGG 57.306 36.000 0.00 0.00 39.43 3.66
2762 2835 7.461749 AGTCTTTTTAGAGATTCCAACATGGA 58.538 34.615 0.00 0.00 46.61 3.41
2772 2845 3.812156 TCCAACATGGACTACATACGG 57.188 47.619 0.00 0.00 42.67 4.02
2773 2846 3.367321 TCCAACATGGACTACATACGGA 58.633 45.455 0.00 0.00 42.67 4.69
2774 2847 3.383505 TCCAACATGGACTACATACGGAG 59.616 47.826 0.00 0.00 42.67 4.63
2775 2848 3.123804 CAACATGGACTACATACGGAGC 58.876 50.000 0.00 0.00 37.84 4.70
2776 2849 2.384828 ACATGGACTACATACGGAGCA 58.615 47.619 0.00 0.00 37.84 4.26
2777 2850 2.764010 ACATGGACTACATACGGAGCAA 59.236 45.455 0.00 0.00 37.84 3.91
2778 2851 3.196901 ACATGGACTACATACGGAGCAAA 59.803 43.478 0.00 0.00 37.84 3.68
2779 2852 3.965379 TGGACTACATACGGAGCAAAA 57.035 42.857 0.00 0.00 0.00 2.44
2780 2853 4.481368 TGGACTACATACGGAGCAAAAT 57.519 40.909 0.00 0.00 0.00 1.82
2781 2854 4.188462 TGGACTACATACGGAGCAAAATG 58.812 43.478 0.00 0.00 0.00 2.32
2782 2855 4.081365 TGGACTACATACGGAGCAAAATGA 60.081 41.667 0.00 0.00 0.00 2.57
2783 2856 4.508124 GGACTACATACGGAGCAAAATGAG 59.492 45.833 0.00 0.00 0.00 2.90
2784 2857 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
2785 2858 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
2786 2859 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
2787 2860 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
2788 2861 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
2789 2862 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
2790 2863 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
2791 2864 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
2792 2865 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
2793 2866 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
2794 2867 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
2808 2881 8.697292 AGTGAATCTACACTCTAAAATACTCCC 58.303 37.037 0.00 0.00 46.36 4.30
2809 2882 8.697292 GTGAATCTACACTCTAAAATACTCCCT 58.303 37.037 0.00 0.00 37.73 4.20
2810 2883 8.915036 TGAATCTACACTCTAAAATACTCCCTC 58.085 37.037 0.00 0.00 0.00 4.30
2811 2884 7.842887 ATCTACACTCTAAAATACTCCCTCC 57.157 40.000 0.00 0.00 0.00 4.30
2812 2885 5.826737 TCTACACTCTAAAATACTCCCTCCG 59.173 44.000 0.00 0.00 0.00 4.63
2813 2886 4.351127 ACACTCTAAAATACTCCCTCCGT 58.649 43.478 0.00 0.00 0.00 4.69
2814 2887 4.776308 ACACTCTAAAATACTCCCTCCGTT 59.224 41.667 0.00 0.00 0.00 4.44
2815 2888 5.105432 ACACTCTAAAATACTCCCTCCGTTC 60.105 44.000 0.00 0.00 0.00 3.95
2816 2889 4.405036 ACTCTAAAATACTCCCTCCGTTCC 59.595 45.833 0.00 0.00 0.00 3.62
2817 2890 4.355549 TCTAAAATACTCCCTCCGTTCCA 58.644 43.478 0.00 0.00 0.00 3.53
2818 2891 4.778958 TCTAAAATACTCCCTCCGTTCCAA 59.221 41.667 0.00 0.00 0.00 3.53
2819 2892 4.376225 AAAATACTCCCTCCGTTCCAAA 57.624 40.909 0.00 0.00 0.00 3.28
2820 2893 4.376225 AAATACTCCCTCCGTTCCAAAA 57.624 40.909 0.00 0.00 0.00 2.44
2821 2894 4.586306 AATACTCCCTCCGTTCCAAAAT 57.414 40.909 0.00 0.00 0.00 1.82
2822 2895 5.703730 AATACTCCCTCCGTTCCAAAATA 57.296 39.130 0.00 0.00 0.00 1.40
2823 2896 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
2824 2897 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
2825 2898 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
2826 2899 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
2827 2900 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
2828 2901 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
2829 2902 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
2830 2903 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
2831 2904 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
2832 2905 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
2833 2906 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
2834 2907 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
2835 2908 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
2836 2909 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
2837 2910 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
2838 2911 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
2839 2912 7.235079 TCCAAAATAGATGACCCAACTTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
2840 2913 7.175990 TCCAAAATAGATGACCCAACTTTGTAC 59.824 37.037 0.00 0.00 0.00 2.90
2841 2914 7.176690 CCAAAATAGATGACCCAACTTTGTACT 59.823 37.037 0.00 0.00 0.00 2.73
2842 2915 9.226606 CAAAATAGATGACCCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
2843 2916 9.449719 AAAATAGATGACCCAACTTTGTACTAG 57.550 33.333 0.00 0.00 0.00 2.57
2844 2917 7.973048 ATAGATGACCCAACTTTGTACTAGA 57.027 36.000 0.00 0.00 0.00 2.43
2845 2918 6.038997 AGATGACCCAACTTTGTACTAGAC 57.961 41.667 0.00 0.00 0.00 2.59
2846 2919 5.780793 AGATGACCCAACTTTGTACTAGACT 59.219 40.000 0.00 0.00 0.00 3.24
2847 2920 5.881923 TGACCCAACTTTGTACTAGACTT 57.118 39.130 0.00 0.00 0.00 3.01
2848 2921 6.982160 TGACCCAACTTTGTACTAGACTTA 57.018 37.500 0.00 0.00 0.00 2.24
2849 2922 7.364149 TGACCCAACTTTGTACTAGACTTAA 57.636 36.000 0.00 0.00 0.00 1.85
2850 2923 7.970102 TGACCCAACTTTGTACTAGACTTAAT 58.030 34.615 0.00 0.00 0.00 1.40
2851 2924 9.092338 TGACCCAACTTTGTACTAGACTTAATA 57.908 33.333 0.00 0.00 0.00 0.98
2852 2925 9.363763 GACCCAACTTTGTACTAGACTTAATAC 57.636 37.037 0.00 0.00 0.00 1.89
2853 2926 8.031277 ACCCAACTTTGTACTAGACTTAATACG 58.969 37.037 0.00 0.00 0.00 3.06
2854 2927 8.246180 CCCAACTTTGTACTAGACTTAATACGA 58.754 37.037 0.00 0.00 0.00 3.43
2855 2928 9.630098 CCAACTTTGTACTAGACTTAATACGAA 57.370 33.333 0.00 0.00 0.00 3.85
2862 2935 9.224267 TGTACTAGACTTAATACGAAGTTGAGT 57.776 33.333 0.00 0.00 37.78 3.41
2863 2936 9.701355 GTACTAGACTTAATACGAAGTTGAGTC 57.299 37.037 0.00 12.47 37.78 3.36
2864 2937 8.332996 ACTAGACTTAATACGAAGTTGAGTCA 57.667 34.615 18.23 0.00 37.78 3.41
2865 2938 8.790718 ACTAGACTTAATACGAAGTTGAGTCAA 58.209 33.333 18.23 0.08 37.78 3.18
2866 2939 7.870588 AGACTTAATACGAAGTTGAGTCAAC 57.129 36.000 25.51 25.51 37.78 3.18
2879 2952 5.449304 GTTGAGTCAACTATTTTGGAACGG 58.551 41.667 25.56 0.00 40.73 4.44
2880 2953 4.963373 TGAGTCAACTATTTTGGAACGGA 58.037 39.130 0.00 0.00 0.00 4.69
2881 2954 4.994852 TGAGTCAACTATTTTGGAACGGAG 59.005 41.667 0.00 0.00 0.00 4.63
2882 2955 4.324267 AGTCAACTATTTTGGAACGGAGG 58.676 43.478 0.00 0.00 0.00 4.30
2883 2956 3.439129 GTCAACTATTTTGGAACGGAGGG 59.561 47.826 0.00 0.00 0.00 4.30
2884 2957 3.073356 TCAACTATTTTGGAACGGAGGGT 59.927 43.478 0.00 0.00 0.00 4.34
2885 2958 3.067684 ACTATTTTGGAACGGAGGGTG 57.932 47.619 0.00 0.00 0.00 4.61
2886 2959 2.374170 ACTATTTTGGAACGGAGGGTGT 59.626 45.455 0.00 0.00 0.00 4.16
2887 2960 3.583966 ACTATTTTGGAACGGAGGGTGTA 59.416 43.478 0.00 0.00 0.00 2.90
2888 2961 3.732048 ATTTTGGAACGGAGGGTGTAT 57.268 42.857 0.00 0.00 0.00 2.29
2889 2962 2.483014 TTTGGAACGGAGGGTGTATG 57.517 50.000 0.00 0.00 0.00 2.39
2890 2963 1.354101 TTGGAACGGAGGGTGTATGT 58.646 50.000 0.00 0.00 0.00 2.29
2891 2964 2.234896 TGGAACGGAGGGTGTATGTA 57.765 50.000 0.00 0.00 0.00 2.29
2892 2965 2.104967 TGGAACGGAGGGTGTATGTAG 58.895 52.381 0.00 0.00 0.00 2.74
2893 2966 1.202498 GGAACGGAGGGTGTATGTAGC 60.202 57.143 0.00 0.00 0.00 3.58
2894 2967 0.828677 AACGGAGGGTGTATGTAGCC 59.171 55.000 0.00 0.00 38.50 3.93
2895 2968 1.047034 ACGGAGGGTGTATGTAGCCC 61.047 60.000 0.00 0.00 42.64 5.19
2899 2972 3.780624 GGGTGTATGTAGCCCTGTG 57.219 57.895 0.00 0.00 39.31 3.66
2900 2973 0.463833 GGGTGTATGTAGCCCTGTGC 60.464 60.000 0.00 0.00 39.31 4.57
2909 2982 3.284449 GCCCTGTGCGTTCGGTTT 61.284 61.111 0.00 0.00 0.00 3.27
2910 2983 1.962306 GCCCTGTGCGTTCGGTTTA 60.962 57.895 0.00 0.00 0.00 2.01
2911 2984 1.303091 GCCCTGTGCGTTCGGTTTAT 61.303 55.000 0.00 0.00 0.00 1.40
2912 2985 1.161843 CCCTGTGCGTTCGGTTTATT 58.838 50.000 0.00 0.00 0.00 1.40
2913 2986 1.129811 CCCTGTGCGTTCGGTTTATTC 59.870 52.381 0.00 0.00 0.00 1.75
2914 2987 1.201877 CCTGTGCGTTCGGTTTATTCG 60.202 52.381 0.00 0.00 0.00 3.34
2915 2988 0.791422 TGTGCGTTCGGTTTATTCGG 59.209 50.000 0.00 0.00 0.00 4.30
2916 2989 0.792031 GTGCGTTCGGTTTATTCGGT 59.208 50.000 0.00 0.00 0.00 4.69
2917 2990 1.195222 GTGCGTTCGGTTTATTCGGTT 59.805 47.619 0.00 0.00 0.00 4.44
2918 2991 1.872313 TGCGTTCGGTTTATTCGGTTT 59.128 42.857 0.00 0.00 0.00 3.27
2919 2992 3.062763 TGCGTTCGGTTTATTCGGTTTA 58.937 40.909 0.00 0.00 0.00 2.01
2920 2993 3.120718 TGCGTTCGGTTTATTCGGTTTAC 60.121 43.478 0.00 0.00 0.00 2.01
2921 2994 3.120718 GCGTTCGGTTTATTCGGTTTACA 60.121 43.478 0.00 0.00 0.00 2.41
2922 2995 4.435917 GCGTTCGGTTTATTCGGTTTACAT 60.436 41.667 0.00 0.00 0.00 2.29
2923 2996 5.016985 CGTTCGGTTTATTCGGTTTACATG 58.983 41.667 0.00 0.00 0.00 3.21
2924 2997 5.326292 GTTCGGTTTATTCGGTTTACATGG 58.674 41.667 0.00 0.00 0.00 3.66
2925 2998 4.577875 TCGGTTTATTCGGTTTACATGGT 58.422 39.130 0.00 0.00 0.00 3.55
2926 2999 5.002516 TCGGTTTATTCGGTTTACATGGTT 58.997 37.500 0.00 0.00 0.00 3.67
2927 3000 5.122082 TCGGTTTATTCGGTTTACATGGTTC 59.878 40.000 0.00 0.00 0.00 3.62
2928 3001 5.326292 GGTTTATTCGGTTTACATGGTTCG 58.674 41.667 0.00 0.00 0.00 3.95
2929 3002 5.326292 GTTTATTCGGTTTACATGGTTCGG 58.674 41.667 0.00 0.00 0.00 4.30
2930 3003 2.547299 TTCGGTTTACATGGTTCGGT 57.453 45.000 0.00 0.00 0.00 4.69
2931 3004 2.547299 TCGGTTTACATGGTTCGGTT 57.453 45.000 0.00 0.00 0.00 4.44
2932 3005 2.848691 TCGGTTTACATGGTTCGGTTT 58.151 42.857 0.00 0.00 0.00 3.27
2933 3006 4.000331 TCGGTTTACATGGTTCGGTTTA 58.000 40.909 0.00 0.00 0.00 2.01
2934 3007 4.577875 TCGGTTTACATGGTTCGGTTTAT 58.422 39.130 0.00 0.00 0.00 1.40
2935 3008 5.728471 TCGGTTTACATGGTTCGGTTTATA 58.272 37.500 0.00 0.00 0.00 0.98
2936 3009 5.580297 TCGGTTTACATGGTTCGGTTTATAC 59.420 40.000 0.00 0.00 0.00 1.47
2937 3010 5.500610 CGGTTTACATGGTTCGGTTTATACG 60.501 44.000 0.00 0.00 0.00 3.06
2938 3011 5.220643 GGTTTACATGGTTCGGTTTATACGG 60.221 44.000 0.00 0.00 0.00 4.02
2939 3012 3.615224 ACATGGTTCGGTTTATACGGT 57.385 42.857 0.00 0.00 0.00 4.83
2940 3013 3.941573 ACATGGTTCGGTTTATACGGTT 58.058 40.909 0.00 0.00 0.00 4.44
2941 3014 4.325972 ACATGGTTCGGTTTATACGGTTT 58.674 39.130 0.00 0.00 0.00 3.27
2942 3015 4.761227 ACATGGTTCGGTTTATACGGTTTT 59.239 37.500 0.00 0.00 0.00 2.43
2943 3016 5.241285 ACATGGTTCGGTTTATACGGTTTTT 59.759 36.000 0.00 0.00 0.00 1.94
2944 3017 5.355467 TGGTTCGGTTTATACGGTTTTTC 57.645 39.130 0.00 0.00 0.00 2.29
2945 3018 4.084118 TGGTTCGGTTTATACGGTTTTTCG 60.084 41.667 0.00 0.00 0.00 3.46
2946 3019 4.393934 GTTCGGTTTATACGGTTTTTCGG 58.606 43.478 0.00 0.00 0.00 4.30
2947 3020 3.658709 TCGGTTTATACGGTTTTTCGGT 58.341 40.909 0.00 0.00 0.00 4.69
2948 3021 4.810790 TCGGTTTATACGGTTTTTCGGTA 58.189 39.130 0.00 0.00 36.54 4.02
2949 3022 5.415221 TCGGTTTATACGGTTTTTCGGTAT 58.585 37.500 0.00 0.00 42.45 2.73
2950 3023 5.290643 TCGGTTTATACGGTTTTTCGGTATG 59.709 40.000 7.84 0.00 40.85 2.39
2951 3024 5.063312 CGGTTTATACGGTTTTTCGGTATGT 59.937 40.000 7.84 0.00 40.85 2.29
2952 3025 6.254589 CGGTTTATACGGTTTTTCGGTATGTA 59.745 38.462 7.84 0.00 40.85 2.29
2953 3026 7.398746 GGTTTATACGGTTTTTCGGTATGTAC 58.601 38.462 7.84 0.00 40.85 2.90
2954 3027 6.804534 TTATACGGTTTTTCGGTATGTACG 57.195 37.500 7.84 0.00 40.85 3.67
2955 3028 2.336667 ACGGTTTTTCGGTATGTACGG 58.663 47.619 0.00 0.00 0.00 4.02
2956 3029 2.288763 ACGGTTTTTCGGTATGTACGGT 60.289 45.455 0.00 0.00 0.00 4.83
2957 3030 3.057174 ACGGTTTTTCGGTATGTACGGTA 60.057 43.478 0.00 0.00 0.00 4.02
2958 3031 4.111916 CGGTTTTTCGGTATGTACGGTAT 58.888 43.478 0.00 0.00 0.00 2.73
2959 3032 4.566360 CGGTTTTTCGGTATGTACGGTATT 59.434 41.667 0.00 0.00 0.00 1.89
2960 3033 5.746245 CGGTTTTTCGGTATGTACGGTATTA 59.254 40.000 0.00 0.00 0.00 0.98
2961 3034 6.254589 CGGTTTTTCGGTATGTACGGTATTAA 59.745 38.462 0.00 0.00 0.00 1.40
2962 3035 7.042791 CGGTTTTTCGGTATGTACGGTATTAAT 60.043 37.037 0.00 0.00 0.00 1.40
2963 3036 9.255304 GGTTTTTCGGTATGTACGGTATTAATA 57.745 33.333 0.00 0.00 0.00 0.98
2967 3040 9.677567 TTTCGGTATGTACGGTATTAATACTTC 57.322 33.333 21.86 8.30 33.81 3.01
2968 3041 7.518161 TCGGTATGTACGGTATTAATACTTCG 58.482 38.462 21.86 19.44 33.81 3.79
2969 3042 6.742718 CGGTATGTACGGTATTAATACTTCGG 59.257 42.308 21.86 12.82 33.81 4.30
2970 3043 7.573096 CGGTATGTACGGTATTAATACTTCGGT 60.573 40.741 21.86 16.68 33.81 4.69
2971 3044 8.726988 GGTATGTACGGTATTAATACTTCGGTA 58.273 37.037 21.86 15.91 33.81 4.02
2977 3050 8.728088 ACGGTATTAATACTTCGGTAAATACG 57.272 34.615 21.86 15.00 36.24 3.06
2978 3051 7.807907 ACGGTATTAATACTTCGGTAAATACGG 59.192 37.037 21.86 0.00 38.55 4.02
2979 3052 7.807907 CGGTATTAATACTTCGGTAAATACGGT 59.192 37.037 21.86 0.00 36.24 4.83
2980 3053 9.476202 GGTATTAATACTTCGGTAAATACGGTT 57.524 33.333 21.86 0.00 36.24 4.44
2982 3055 7.678194 TTAATACTTCGGTAAATACGGTTCG 57.322 36.000 0.00 0.00 33.79 3.95
2983 3056 2.879826 ACTTCGGTAAATACGGTTCGG 58.120 47.619 0.00 0.00 0.00 4.30
2984 3057 2.231235 ACTTCGGTAAATACGGTTCGGT 59.769 45.455 0.00 0.00 0.00 4.69
2985 3058 3.253230 CTTCGGTAAATACGGTTCGGTT 58.747 45.455 0.00 0.00 0.00 4.44
2986 3059 3.311486 TCGGTAAATACGGTTCGGTTT 57.689 42.857 0.00 0.00 0.00 3.27
2987 3060 3.249917 TCGGTAAATACGGTTCGGTTTC 58.750 45.455 0.00 0.00 0.00 2.78
2988 3061 2.027926 CGGTAAATACGGTTCGGTTTCG 59.972 50.000 0.00 0.00 37.82 3.46
2989 3062 2.348362 GGTAAATACGGTTCGGTTTCGG 59.652 50.000 0.00 0.00 36.95 4.30
2990 3063 2.168326 AAATACGGTTCGGTTTCGGT 57.832 45.000 0.00 0.00 36.95 4.69
2991 3064 3.311486 AAATACGGTTCGGTTTCGGTA 57.689 42.857 0.00 0.00 36.95 4.02
2992 3065 3.525268 AATACGGTTCGGTTTCGGTAT 57.475 42.857 0.00 0.00 36.95 2.73
2993 3066 4.647424 AATACGGTTCGGTTTCGGTATA 57.353 40.909 0.00 0.00 36.95 1.47
2994 3067 4.853924 ATACGGTTCGGTTTCGGTATAT 57.146 40.909 0.00 0.00 36.95 0.86
2995 3068 5.957842 ATACGGTTCGGTTTCGGTATATA 57.042 39.130 0.00 0.00 36.95 0.86
2996 3069 3.964909 ACGGTTCGGTTTCGGTATATAC 58.035 45.455 4.14 4.14 36.95 1.47
2997 3070 3.243401 ACGGTTCGGTTTCGGTATATACC 60.243 47.826 20.39 20.39 42.98 2.73
2998 3071 3.243367 CGGTTCGGTTTCGGTATATACCA 60.243 47.826 27.58 14.40 46.80 3.25
2999 3072 4.692228 GGTTCGGTTTCGGTATATACCAA 58.308 43.478 27.58 18.57 46.80 3.67
3000 3073 5.115480 GGTTCGGTTTCGGTATATACCAAA 58.885 41.667 27.58 22.18 46.80 3.28
3001 3074 5.759763 GGTTCGGTTTCGGTATATACCAAAT 59.240 40.000 27.58 0.00 46.80 2.32
3002 3075 6.260714 GGTTCGGTTTCGGTATATACCAAATT 59.739 38.462 27.58 0.00 46.80 1.82
3003 3076 7.440856 GGTTCGGTTTCGGTATATACCAAATTA 59.559 37.037 27.58 14.29 46.80 1.40
3004 3077 8.992073 GTTCGGTTTCGGTATATACCAAATTAT 58.008 33.333 27.58 0.00 46.80 1.28
3005 3078 9.558396 TTCGGTTTCGGTATATACCAAATTATT 57.442 29.630 27.58 0.00 46.80 1.40
3006 3079 9.558396 TCGGTTTCGGTATATACCAAATTATTT 57.442 29.630 27.58 0.00 46.80 1.40
3007 3080 9.815936 CGGTTTCGGTATATACCAAATTATTTC 57.184 33.333 27.58 14.34 46.80 2.17
3008 3081 9.815936 GGTTTCGGTATATACCAAATTATTTCG 57.184 33.333 27.58 12.15 46.80 3.46
3009 3082 9.815936 GTTTCGGTATATACCAAATTATTTCGG 57.184 33.333 27.58 9.93 46.80 4.30
3010 3083 9.558396 TTTCGGTATATACCAAATTATTTCGGT 57.442 29.630 27.58 13.35 46.80 4.69
3019 3092 6.557110 ACCAAATTATTTCGGTATGGTTTCG 58.443 36.000 9.07 0.00 36.32 3.46
3020 3093 5.974751 CCAAATTATTTCGGTATGGTTTCGG 59.025 40.000 0.00 0.00 0.00 4.30
3021 3094 6.404954 CCAAATTATTTCGGTATGGTTTCGGT 60.405 38.462 0.00 0.00 0.00 4.69
3022 3095 7.201714 CCAAATTATTTCGGTATGGTTTCGGTA 60.202 37.037 0.00 0.00 0.00 4.02
3023 3096 8.347035 CAAATTATTTCGGTATGGTTTCGGTAT 58.653 33.333 0.00 0.00 0.00 2.73
3024 3097 9.558396 AAATTATTTCGGTATGGTTTCGGTATA 57.442 29.630 0.00 0.00 0.00 1.47
3025 3098 9.729281 AATTATTTCGGTATGGTTTCGGTATAT 57.271 29.630 0.00 0.00 0.00 0.86
3027 3100 9.638239 TTATTTCGGTATGGTTTCGGTATATAC 57.362 33.333 4.14 4.14 0.00 1.47
3028 3101 5.643379 TCGGTATGGTTTCGGTATATACC 57.357 43.478 20.39 20.39 42.98 2.73
3029 3102 5.076182 TCGGTATGGTTTCGGTATATACCA 58.924 41.667 27.58 13.16 46.80 3.25
3031 3104 6.889177 TCGGTATGGTTTCGGTATATACCATA 59.111 38.462 27.58 17.66 46.65 2.74
3037 3110 8.449251 TGGTTTCGGTATATACCATAAAAACC 57.551 34.615 32.31 32.31 46.80 3.27
3038 3111 8.449251 GGTTTCGGTATATACCATAAAAACCA 57.551 34.615 33.00 15.64 46.80 3.67
3039 3112 8.901793 GGTTTCGGTATATACCATAAAAACCAA 58.098 33.333 33.00 15.19 46.80 3.67
3042 3115 9.683870 TTCGGTATATACCATAAAAACCAAAGT 57.316 29.630 27.58 0.00 46.80 2.66
3043 3116 9.683870 TCGGTATATACCATAAAAACCAAAGTT 57.316 29.630 27.58 0.00 46.80 2.66
3044 3117 9.724839 CGGTATATACCATAAAAACCAAAGTTG 57.275 33.333 27.58 5.19 46.80 3.16
3048 3121 9.816354 ATATACCATAAAAACCAAAGTTGATGC 57.184 29.630 0.00 0.00 35.97 3.91
3049 3122 4.987912 ACCATAAAAACCAAAGTTGATGCG 59.012 37.500 0.00 0.00 35.97 4.73
3050 3123 5.221342 ACCATAAAAACCAAAGTTGATGCGA 60.221 36.000 0.00 0.00 35.97 5.10
3051 3124 5.694006 CCATAAAAACCAAAGTTGATGCGAA 59.306 36.000 0.00 0.00 35.97 4.70
3052 3125 6.368516 CCATAAAAACCAAAGTTGATGCGAAT 59.631 34.615 0.00 0.00 35.97 3.34
3053 3126 7.095271 CCATAAAAACCAAAGTTGATGCGAATT 60.095 33.333 0.00 0.00 35.97 2.17
3054 3127 6.676237 AAAAACCAAAGTTGATGCGAATTT 57.324 29.167 0.00 0.00 35.97 1.82
3055 3128 6.676237 AAAACCAAAGTTGATGCGAATTTT 57.324 29.167 0.00 0.00 35.97 1.82
3056 3129 7.778470 AAAACCAAAGTTGATGCGAATTTTA 57.222 28.000 0.00 0.00 35.97 1.52
3057 3130 7.778470 AAACCAAAGTTGATGCGAATTTTAA 57.222 28.000 0.00 0.00 35.97 1.52
3058 3131 7.778470 AACCAAAGTTGATGCGAATTTTAAA 57.222 28.000 0.00 0.00 33.97 1.52
3059 3132 7.778470 ACCAAAGTTGATGCGAATTTTAAAA 57.222 28.000 2.51 2.51 0.00 1.52
3060 3133 8.376889 ACCAAAGTTGATGCGAATTTTAAAAT 57.623 26.923 7.64 7.64 0.00 1.82
3061 3134 8.281893 ACCAAAGTTGATGCGAATTTTAAAATG 58.718 29.630 14.04 4.28 0.00 2.32
3062 3135 8.494347 CCAAAGTTGATGCGAATTTTAAAATGA 58.506 29.630 14.04 0.28 0.00 2.57
3063 3136 9.305110 CAAAGTTGATGCGAATTTTAAAATGAC 57.695 29.630 14.04 10.33 0.00 3.06
3064 3137 7.264448 AGTTGATGCGAATTTTAAAATGACG 57.736 32.000 23.88 23.88 34.53 4.35
3065 3138 6.861055 AGTTGATGCGAATTTTAAAATGACGT 59.139 30.769 26.22 16.50 34.20 4.34
3066 3139 8.018520 AGTTGATGCGAATTTTAAAATGACGTA 58.981 29.630 26.22 24.36 34.20 3.57
3067 3140 8.631695 GTTGATGCGAATTTTAAAATGACGTAA 58.368 29.630 26.22 20.04 34.20 3.18
3068 3141 8.903570 TGATGCGAATTTTAAAATGACGTAAT 57.096 26.923 26.22 22.19 34.20 1.89
3069 3142 9.989869 TGATGCGAATTTTAAAATGACGTAATA 57.010 25.926 26.22 18.22 34.20 0.98
3098 3171 9.934190 AATTTGCAAATTTATGACTCAAAACAC 57.066 25.926 27.73 0.00 35.16 3.32
3099 3172 8.484641 TTTGCAAATTTATGACTCAAAACACA 57.515 26.923 8.05 0.00 0.00 3.72
3100 3173 8.659925 TTGCAAATTTATGACTCAAAACACAT 57.340 26.923 0.00 0.00 0.00 3.21
3101 3174 8.659925 TGCAAATTTATGACTCAAAACACATT 57.340 26.923 0.00 0.00 0.00 2.71
3102 3175 8.763356 TGCAAATTTATGACTCAAAACACATTC 58.237 29.630 0.00 0.00 0.00 2.67
3103 3176 8.981647 GCAAATTTATGACTCAAAACACATTCT 58.018 29.630 0.00 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 6.360844 CTTCACATCATTCCATGAGAAGTC 57.639 41.667 10.66 0.00 42.23 3.01
124 130 9.997482 GCGTATCTAATGAATTAAGGAAAACAA 57.003 29.630 0.00 0.00 0.00 2.83
134 140 9.594478 TTTGTTCTGAGCGTATCTAATGAATTA 57.406 29.630 0.00 0.00 0.00 1.40
188 216 9.612066 TTTGCAAATTCTGAACCTAAAGAAATT 57.388 25.926 8.05 0.00 36.09 1.82
476 527 7.059448 TCAATAAAATGGCGCATTTCTTTTC 57.941 32.000 10.83 0.00 42.32 2.29
743 799 9.685276 TTCATAGGAAATGAGCAGAAATAAGAA 57.315 29.630 0.00 0.00 0.00 2.52
771 827 0.326595 TCGCATTTAGGCCCAGTTCA 59.673 50.000 0.00 0.00 0.00 3.18
786 842 4.742201 GCCAGACCGCTCTTCGCA 62.742 66.667 0.00 0.00 39.08 5.10
1347 1410 1.452145 GGAAGTTGCGGCACTGGAAA 61.452 55.000 0.05 0.00 0.00 3.13
1542 1605 2.564504 CTCCAGCTCGGGATCAATATCA 59.435 50.000 0.00 0.00 36.09 2.15
1725 1791 4.331168 CGCCTATTCTTCTTCTTGTCCTTG 59.669 45.833 0.00 0.00 0.00 3.61
1808 1874 6.836527 CCTCTTCCTATCTTTCCTACTCTTCA 59.163 42.308 0.00 0.00 0.00 3.02
1869 1935 2.342659 TCCCCTCCAGATTCATCATCC 58.657 52.381 0.00 0.00 31.20 3.51
1914 1980 0.681887 TCCGGTGATGACGCCTCTTA 60.682 55.000 0.00 0.00 43.77 2.10
1962 2028 1.672881 CTTTCATGTGGGGATTCGCTC 59.327 52.381 0.40 0.00 0.00 5.03
1998 2064 1.346068 GACCTCTTGTGGCTCTTCTGT 59.654 52.381 0.00 0.00 0.00 3.41
2331 2399 8.494016 AATGACAAAAGCCTGAGTAATACTAC 57.506 34.615 0.00 0.00 0.00 2.73
2573 2644 7.280876 TCAGTACCGATTTTACTACGTGTCTAT 59.719 37.037 0.00 0.00 0.00 1.98
2640 2713 5.091431 GTCTGCAACAATAAATCAGCTGAC 58.909 41.667 20.97 2.36 41.34 3.51
2698 2771 9.253832 CAAAGGGAGTAGTATAGATCATCATCT 57.746 37.037 0.00 0.00 42.48 2.90
2735 2808 9.231297 CCATGTTGGAATCTCTAAAAAGACTTA 57.769 33.333 0.00 0.00 40.96 2.24
2736 2809 7.944554 TCCATGTTGGAATCTCTAAAAAGACTT 59.055 33.333 0.00 0.00 45.00 3.01
2737 2810 7.461749 TCCATGTTGGAATCTCTAAAAAGACT 58.538 34.615 0.00 0.00 45.00 3.24
2738 2811 7.687941 TCCATGTTGGAATCTCTAAAAAGAC 57.312 36.000 0.00 0.00 45.00 3.01
2752 2825 3.367321 TCCGTATGTAGTCCATGTTGGA 58.633 45.455 0.00 0.00 45.98 3.53
2753 2826 3.717707 CTCCGTATGTAGTCCATGTTGG 58.282 50.000 0.00 0.00 39.43 3.77
2754 2827 3.123804 GCTCCGTATGTAGTCCATGTTG 58.876 50.000 0.00 0.00 34.86 3.33
2755 2828 2.764010 TGCTCCGTATGTAGTCCATGTT 59.236 45.455 0.00 0.00 34.86 2.71
2756 2829 2.384828 TGCTCCGTATGTAGTCCATGT 58.615 47.619 0.00 0.00 34.86 3.21
2757 2830 3.452755 TTGCTCCGTATGTAGTCCATG 57.547 47.619 0.00 0.00 34.86 3.66
2758 2831 4.481368 TTTTGCTCCGTATGTAGTCCAT 57.519 40.909 0.00 0.00 37.58 3.41
2759 2832 3.965379 TTTTGCTCCGTATGTAGTCCA 57.035 42.857 0.00 0.00 0.00 4.02
2760 2833 4.439057 TCATTTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
2761 2834 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
2762 2835 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
2763 2836 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
2764 2837 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
2765 2838 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
2766 2839 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
2767 2840 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
2768 2841 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
2769 2842 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
2770 2843 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
2771 2844 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
2772 2845 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
2783 2856 8.697292 AGGGAGTATTTTAGAGTGTAGATTCAC 58.303 37.037 0.00 0.00 38.46 3.18
2784 2857 8.840200 AGGGAGTATTTTAGAGTGTAGATTCA 57.160 34.615 0.00 0.00 0.00 2.57
2785 2858 8.361889 GGAGGGAGTATTTTAGAGTGTAGATTC 58.638 40.741 0.00 0.00 0.00 2.52
2786 2859 7.014422 CGGAGGGAGTATTTTAGAGTGTAGATT 59.986 40.741 0.00 0.00 0.00 2.40
2787 2860 6.490721 CGGAGGGAGTATTTTAGAGTGTAGAT 59.509 42.308 0.00 0.00 0.00 1.98
2788 2861 5.826737 CGGAGGGAGTATTTTAGAGTGTAGA 59.173 44.000 0.00 0.00 0.00 2.59
2789 2862 5.593502 ACGGAGGGAGTATTTTAGAGTGTAG 59.406 44.000 0.00 0.00 0.00 2.74
2790 2863 5.513233 ACGGAGGGAGTATTTTAGAGTGTA 58.487 41.667 0.00 0.00 0.00 2.90
2791 2864 4.351127 ACGGAGGGAGTATTTTAGAGTGT 58.649 43.478 0.00 0.00 0.00 3.55
2792 2865 5.340439 AACGGAGGGAGTATTTTAGAGTG 57.660 43.478 0.00 0.00 0.00 3.51
2793 2866 4.405036 GGAACGGAGGGAGTATTTTAGAGT 59.595 45.833 0.00 0.00 0.00 3.24
2794 2867 4.404715 TGGAACGGAGGGAGTATTTTAGAG 59.595 45.833 0.00 0.00 0.00 2.43
2795 2868 4.355549 TGGAACGGAGGGAGTATTTTAGA 58.644 43.478 0.00 0.00 0.00 2.10
2796 2869 4.748277 TGGAACGGAGGGAGTATTTTAG 57.252 45.455 0.00 0.00 0.00 1.85
2797 2870 5.502089 TTTGGAACGGAGGGAGTATTTTA 57.498 39.130 0.00 0.00 0.00 1.52
2798 2871 4.376225 TTTGGAACGGAGGGAGTATTTT 57.624 40.909 0.00 0.00 0.00 1.82
2799 2872 4.376225 TTTTGGAACGGAGGGAGTATTT 57.624 40.909 0.00 0.00 0.00 1.40
2800 2873 4.586306 ATTTTGGAACGGAGGGAGTATT 57.414 40.909 0.00 0.00 0.00 1.89
2801 2874 4.966805 TCTATTTTGGAACGGAGGGAGTAT 59.033 41.667 0.00 0.00 0.00 2.12
2802 2875 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
2803 2876 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
2804 2877 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
2805 2878 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
2806 2879 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
2807 2880 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
2808 2881 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
2809 2882 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
2810 2883 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
2811 2884 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
2812 2885 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
2813 2886 6.553100 ACAAAGTTGGGTCATCTATTTTGGAA 59.447 34.615 0.00 0.00 0.00 3.53
2814 2887 6.074648 ACAAAGTTGGGTCATCTATTTTGGA 58.925 36.000 0.00 0.00 0.00 3.53
2815 2888 6.345096 ACAAAGTTGGGTCATCTATTTTGG 57.655 37.500 0.00 0.00 0.00 3.28
2816 2889 8.110860 AGTACAAAGTTGGGTCATCTATTTTG 57.889 34.615 0.00 0.00 0.00 2.44
2817 2890 9.449719 CTAGTACAAAGTTGGGTCATCTATTTT 57.550 33.333 0.00 0.00 0.00 1.82
2818 2891 8.822805 TCTAGTACAAAGTTGGGTCATCTATTT 58.177 33.333 0.00 0.00 0.00 1.40
2819 2892 8.258708 GTCTAGTACAAAGTTGGGTCATCTATT 58.741 37.037 0.00 0.00 0.00 1.73
2820 2893 7.620094 AGTCTAGTACAAAGTTGGGTCATCTAT 59.380 37.037 0.00 0.00 0.00 1.98
2821 2894 6.952358 AGTCTAGTACAAAGTTGGGTCATCTA 59.048 38.462 0.00 0.00 0.00 1.98
2822 2895 5.780793 AGTCTAGTACAAAGTTGGGTCATCT 59.219 40.000 0.00 0.00 0.00 2.90
2823 2896 6.038997 AGTCTAGTACAAAGTTGGGTCATC 57.961 41.667 0.00 0.00 0.00 2.92
2824 2897 6.435292 AAGTCTAGTACAAAGTTGGGTCAT 57.565 37.500 0.00 0.00 0.00 3.06
2825 2898 5.881923 AAGTCTAGTACAAAGTTGGGTCA 57.118 39.130 0.00 0.00 0.00 4.02
2826 2899 9.363763 GTATTAAGTCTAGTACAAAGTTGGGTC 57.636 37.037 0.00 0.00 0.00 4.46
2827 2900 8.031277 CGTATTAAGTCTAGTACAAAGTTGGGT 58.969 37.037 0.00 0.00 0.00 4.51
2828 2901 8.246180 TCGTATTAAGTCTAGTACAAAGTTGGG 58.754 37.037 0.00 0.00 0.00 4.12
2829 2902 9.630098 TTCGTATTAAGTCTAGTACAAAGTTGG 57.370 33.333 0.00 0.00 0.00 3.77
2836 2909 9.224267 ACTCAACTTCGTATTAAGTCTAGTACA 57.776 33.333 0.00 0.00 38.76 2.90
2837 2910 9.701355 GACTCAACTTCGTATTAAGTCTAGTAC 57.299 37.037 0.00 0.00 38.76 2.73
2838 2911 9.440773 TGACTCAACTTCGTATTAAGTCTAGTA 57.559 33.333 0.00 0.00 38.76 1.82
2839 2912 8.332996 TGACTCAACTTCGTATTAAGTCTAGT 57.667 34.615 0.00 0.00 38.76 2.57
2840 2913 9.063739 GTTGACTCAACTTCGTATTAAGTCTAG 57.936 37.037 13.77 0.00 40.73 2.43
2841 2914 8.961294 GTTGACTCAACTTCGTATTAAGTCTA 57.039 34.615 13.77 0.00 40.73 2.59
2842 2915 7.870588 GTTGACTCAACTTCGTATTAAGTCT 57.129 36.000 13.77 0.00 40.73 3.24
2856 2929 5.237779 TCCGTTCCAAAATAGTTGACTCAAC 59.762 40.000 13.25 13.25 43.83 3.18
2857 2930 5.369833 TCCGTTCCAAAATAGTTGACTCAA 58.630 37.500 0.00 0.00 0.00 3.02
2858 2931 4.963373 TCCGTTCCAAAATAGTTGACTCA 58.037 39.130 0.00 0.00 0.00 3.41
2859 2932 4.392138 CCTCCGTTCCAAAATAGTTGACTC 59.608 45.833 0.00 0.00 0.00 3.36
2860 2933 4.324267 CCTCCGTTCCAAAATAGTTGACT 58.676 43.478 0.00 0.00 0.00 3.41
2861 2934 3.439129 CCCTCCGTTCCAAAATAGTTGAC 59.561 47.826 0.00 0.00 0.00 3.18
2862 2935 3.073356 ACCCTCCGTTCCAAAATAGTTGA 59.927 43.478 0.00 0.00 0.00 3.18
2863 2936 3.190535 CACCCTCCGTTCCAAAATAGTTG 59.809 47.826 0.00 0.00 0.00 3.16
2864 2937 3.181437 ACACCCTCCGTTCCAAAATAGTT 60.181 43.478 0.00 0.00 0.00 2.24
2865 2938 2.374170 ACACCCTCCGTTCCAAAATAGT 59.626 45.455 0.00 0.00 0.00 2.12
2866 2939 3.067684 ACACCCTCCGTTCCAAAATAG 57.932 47.619 0.00 0.00 0.00 1.73
2867 2940 4.019141 ACATACACCCTCCGTTCCAAAATA 60.019 41.667 0.00 0.00 0.00 1.40
2868 2941 3.245122 ACATACACCCTCCGTTCCAAAAT 60.245 43.478 0.00 0.00 0.00 1.82
2869 2942 2.106857 ACATACACCCTCCGTTCCAAAA 59.893 45.455 0.00 0.00 0.00 2.44
2870 2943 1.700739 ACATACACCCTCCGTTCCAAA 59.299 47.619 0.00 0.00 0.00 3.28
2871 2944 1.354101 ACATACACCCTCCGTTCCAA 58.646 50.000 0.00 0.00 0.00 3.53
2872 2945 2.104967 CTACATACACCCTCCGTTCCA 58.895 52.381 0.00 0.00 0.00 3.53
2873 2946 1.202498 GCTACATACACCCTCCGTTCC 60.202 57.143 0.00 0.00 0.00 3.62
2874 2947 1.202498 GGCTACATACACCCTCCGTTC 60.202 57.143 0.00 0.00 0.00 3.95
2875 2948 0.828677 GGCTACATACACCCTCCGTT 59.171 55.000 0.00 0.00 0.00 4.44
2876 2949 1.047034 GGGCTACATACACCCTCCGT 61.047 60.000 0.00 0.00 40.75 4.69
2877 2950 1.746517 GGGCTACATACACCCTCCG 59.253 63.158 0.00 0.00 40.75 4.63
2881 2954 0.463833 GCACAGGGCTACATACACCC 60.464 60.000 0.00 0.00 44.62 4.61
2882 2955 0.810031 CGCACAGGGCTACATACACC 60.810 60.000 0.00 0.00 41.67 4.16
2883 2956 0.108329 ACGCACAGGGCTACATACAC 60.108 55.000 0.00 0.00 41.67 2.90
2884 2957 0.611200 AACGCACAGGGCTACATACA 59.389 50.000 0.00 0.00 41.67 2.29
2885 2958 1.287425 GAACGCACAGGGCTACATAC 58.713 55.000 0.00 0.00 41.67 2.39
2886 2959 0.179121 CGAACGCACAGGGCTACATA 60.179 55.000 0.00 0.00 41.67 2.29
2887 2960 1.447838 CGAACGCACAGGGCTACAT 60.448 57.895 0.00 0.00 41.67 2.29
2888 2961 2.048597 CGAACGCACAGGGCTACA 60.049 61.111 0.00 0.00 41.67 2.74
2889 2962 2.813908 CCGAACGCACAGGGCTAC 60.814 66.667 0.00 0.00 41.67 3.58
2890 2963 2.386064 AAACCGAACGCACAGGGCTA 62.386 55.000 0.00 0.00 41.67 3.93
2891 2964 2.386064 TAAACCGAACGCACAGGGCT 62.386 55.000 0.00 0.00 41.67 5.19
2892 2965 1.303091 ATAAACCGAACGCACAGGGC 61.303 55.000 0.00 0.00 39.90 5.19
2893 2966 1.129811 GAATAAACCGAACGCACAGGG 59.870 52.381 0.00 0.00 0.00 4.45
2894 2967 1.201877 CGAATAAACCGAACGCACAGG 60.202 52.381 0.00 0.00 0.00 4.00
2895 2968 1.201877 CCGAATAAACCGAACGCACAG 60.202 52.381 0.00 0.00 0.00 3.66
2896 2969 0.791422 CCGAATAAACCGAACGCACA 59.209 50.000 0.00 0.00 0.00 4.57
2897 2970 0.792031 ACCGAATAAACCGAACGCAC 59.208 50.000 0.00 0.00 0.00 5.34
2898 2971 1.510776 AACCGAATAAACCGAACGCA 58.489 45.000 0.00 0.00 0.00 5.24
2899 2972 2.599739 AAACCGAATAAACCGAACGC 57.400 45.000 0.00 0.00 0.00 4.84
2900 2973 4.644044 TGTAAACCGAATAAACCGAACG 57.356 40.909 0.00 0.00 0.00 3.95
2901 2974 5.106594 ACCATGTAAACCGAATAAACCGAAC 60.107 40.000 0.00 0.00 0.00 3.95
2902 2975 5.002516 ACCATGTAAACCGAATAAACCGAA 58.997 37.500 0.00 0.00 0.00 4.30
2903 2976 4.577875 ACCATGTAAACCGAATAAACCGA 58.422 39.130 0.00 0.00 0.00 4.69
2904 2977 4.950434 ACCATGTAAACCGAATAAACCG 57.050 40.909 0.00 0.00 0.00 4.44
2905 2978 5.326292 CGAACCATGTAAACCGAATAAACC 58.674 41.667 0.00 0.00 0.00 3.27
2906 2979 5.106594 ACCGAACCATGTAAACCGAATAAAC 60.107 40.000 0.00 0.00 0.00 2.01
2907 2980 5.002516 ACCGAACCATGTAAACCGAATAAA 58.997 37.500 0.00 0.00 0.00 1.40
2908 2981 4.577875 ACCGAACCATGTAAACCGAATAA 58.422 39.130 0.00 0.00 0.00 1.40
2909 2982 4.205065 ACCGAACCATGTAAACCGAATA 57.795 40.909 0.00 0.00 0.00 1.75
2910 2983 3.062122 ACCGAACCATGTAAACCGAAT 57.938 42.857 0.00 0.00 0.00 3.34
2911 2984 2.547299 ACCGAACCATGTAAACCGAA 57.453 45.000 0.00 0.00 0.00 4.30
2912 2985 2.547299 AACCGAACCATGTAAACCGA 57.453 45.000 0.00 0.00 0.00 4.69
2913 2986 4.950434 ATAAACCGAACCATGTAAACCG 57.050 40.909 0.00 0.00 0.00 4.44
2914 2987 5.220643 CCGTATAAACCGAACCATGTAAACC 60.221 44.000 0.00 0.00 0.00 3.27
2915 2988 5.351189 ACCGTATAAACCGAACCATGTAAAC 59.649 40.000 0.00 0.00 0.00 2.01
2916 2989 5.486526 ACCGTATAAACCGAACCATGTAAA 58.513 37.500 0.00 0.00 0.00 2.01
2917 2990 5.083533 ACCGTATAAACCGAACCATGTAA 57.916 39.130 0.00 0.00 0.00 2.41
2918 2991 4.734398 ACCGTATAAACCGAACCATGTA 57.266 40.909 0.00 0.00 0.00 2.29
2919 2992 3.615224 ACCGTATAAACCGAACCATGT 57.385 42.857 0.00 0.00 0.00 3.21
2920 2993 4.950434 AAACCGTATAAACCGAACCATG 57.050 40.909 0.00 0.00 0.00 3.66
2921 2994 5.390779 CGAAAAACCGTATAAACCGAACCAT 60.391 40.000 0.00 0.00 0.00 3.55
2922 2995 4.084118 CGAAAAACCGTATAAACCGAACCA 60.084 41.667 0.00 0.00 0.00 3.67
2923 2996 4.393934 CGAAAAACCGTATAAACCGAACC 58.606 43.478 0.00 0.00 0.00 3.62
2924 2997 4.084066 ACCGAAAAACCGTATAAACCGAAC 60.084 41.667 0.00 0.00 0.00 3.95
2925 2998 4.061596 ACCGAAAAACCGTATAAACCGAA 58.938 39.130 0.00 0.00 0.00 4.30
2926 2999 3.658709 ACCGAAAAACCGTATAAACCGA 58.341 40.909 0.00 0.00 0.00 4.69
2927 3000 5.063312 ACATACCGAAAAACCGTATAAACCG 59.937 40.000 0.00 0.00 0.00 4.44
2928 3001 6.421377 ACATACCGAAAAACCGTATAAACC 57.579 37.500 0.00 0.00 0.00 3.27
2929 3002 7.110511 CGTACATACCGAAAAACCGTATAAAC 58.889 38.462 0.00 0.00 0.00 2.01
2930 3003 6.254589 CCGTACATACCGAAAAACCGTATAAA 59.745 38.462 0.00 0.00 0.00 1.40
2931 3004 5.746245 CCGTACATACCGAAAAACCGTATAA 59.254 40.000 0.00 0.00 0.00 0.98
2932 3005 5.163602 ACCGTACATACCGAAAAACCGTATA 60.164 40.000 0.00 0.00 0.00 1.47
2933 3006 4.111916 CCGTACATACCGAAAAACCGTAT 58.888 43.478 0.00 0.00 0.00 3.06
2934 3007 3.057174 ACCGTACATACCGAAAAACCGTA 60.057 43.478 0.00 0.00 0.00 4.02
2935 3008 2.288763 ACCGTACATACCGAAAAACCGT 60.289 45.455 0.00 0.00 0.00 4.83
2936 3009 2.336667 ACCGTACATACCGAAAAACCG 58.663 47.619 0.00 0.00 0.00 4.44
2937 3010 7.532682 TTAATACCGTACATACCGAAAAACC 57.467 36.000 0.00 0.00 0.00 3.27
2941 3014 9.677567 GAAGTATTAATACCGTACATACCGAAA 57.322 33.333 19.74 0.00 33.79 3.46
2942 3015 8.015087 CGAAGTATTAATACCGTACATACCGAA 58.985 37.037 19.74 0.00 33.79 4.30
2943 3016 7.360861 CCGAAGTATTAATACCGTACATACCGA 60.361 40.741 19.74 0.00 33.79 4.69
2944 3017 6.742718 CCGAAGTATTAATACCGTACATACCG 59.257 42.308 19.74 10.72 33.79 4.02
2945 3018 7.593825 ACCGAAGTATTAATACCGTACATACC 58.406 38.462 19.74 0.00 33.79 2.73
2951 3024 9.820229 CGTATTTACCGAAGTATTAATACCGTA 57.180 33.333 19.74 12.84 32.90 4.02
2952 3025 7.807907 CCGTATTTACCGAAGTATTAATACCGT 59.192 37.037 19.74 13.65 32.90 4.83
2953 3026 7.807907 ACCGTATTTACCGAAGTATTAATACCG 59.192 37.037 19.74 16.55 32.90 4.02
2954 3027 9.476202 AACCGTATTTACCGAAGTATTAATACC 57.524 33.333 19.74 6.85 32.90 2.73
2956 3029 9.393249 CGAACCGTATTTACCGAAGTATTAATA 57.607 33.333 0.00 0.00 0.00 0.98
2957 3030 7.382218 CCGAACCGTATTTACCGAAGTATTAAT 59.618 37.037 0.00 0.00 0.00 1.40
2958 3031 6.695278 CCGAACCGTATTTACCGAAGTATTAA 59.305 38.462 0.00 0.00 0.00 1.40
2959 3032 6.183360 ACCGAACCGTATTTACCGAAGTATTA 60.183 38.462 0.00 0.00 0.00 0.98
2960 3033 5.043248 CCGAACCGTATTTACCGAAGTATT 58.957 41.667 0.00 0.00 0.00 1.89
2961 3034 4.097892 ACCGAACCGTATTTACCGAAGTAT 59.902 41.667 0.00 0.00 0.00 2.12
2962 3035 3.442273 ACCGAACCGTATTTACCGAAGTA 59.558 43.478 0.00 0.00 0.00 2.24
2963 3036 2.231235 ACCGAACCGTATTTACCGAAGT 59.769 45.455 0.00 0.00 0.00 3.01
2964 3037 2.879826 ACCGAACCGTATTTACCGAAG 58.120 47.619 0.00 0.00 0.00 3.79
2965 3038 3.311486 AACCGAACCGTATTTACCGAA 57.689 42.857 0.00 0.00 0.00 4.30
2966 3039 3.249917 GAAACCGAACCGTATTTACCGA 58.750 45.455 0.00 0.00 0.00 4.69
2967 3040 2.027926 CGAAACCGAACCGTATTTACCG 59.972 50.000 0.00 0.00 0.00 4.02
2968 3041 2.348362 CCGAAACCGAACCGTATTTACC 59.652 50.000 0.00 0.00 0.00 2.85
2969 3042 2.993220 ACCGAAACCGAACCGTATTTAC 59.007 45.455 0.00 0.00 0.00 2.01
2970 3043 3.311486 ACCGAAACCGAACCGTATTTA 57.689 42.857 0.00 0.00 0.00 1.40
2971 3044 2.168326 ACCGAAACCGAACCGTATTT 57.832 45.000 0.00 0.00 0.00 1.40
2972 3045 3.525268 ATACCGAAACCGAACCGTATT 57.475 42.857 0.00 0.00 0.00 1.89
2973 3046 4.853924 ATATACCGAAACCGAACCGTAT 57.146 40.909 0.00 0.00 0.00 3.06
2974 3047 4.023536 GGTATATACCGAAACCGAACCGTA 60.024 45.833 16.11 0.00 36.50 4.02
2975 3048 3.243401 GGTATATACCGAAACCGAACCGT 60.243 47.826 16.11 0.00 36.50 4.83
2976 3049 3.308530 GGTATATACCGAAACCGAACCG 58.691 50.000 16.11 0.00 36.50 4.44
2996 3069 5.974751 CCGAAACCATACCGAAATAATTTGG 59.025 40.000 0.00 0.00 44.62 3.28
2997 3070 6.557110 ACCGAAACCATACCGAAATAATTTG 58.443 36.000 0.00 0.00 0.00 2.32
2998 3071 6.762702 ACCGAAACCATACCGAAATAATTT 57.237 33.333 0.00 0.00 0.00 1.82
2999 3072 9.729281 ATATACCGAAACCATACCGAAATAATT 57.271 29.630 0.00 0.00 0.00 1.40
3001 3074 9.638239 GTATATACCGAAACCATACCGAAATAA 57.362 33.333 1.02 0.00 0.00 1.40
3002 3075 8.250332 GGTATATACCGAAACCATACCGAAATA 58.750 37.037 16.11 0.00 36.50 1.40
3003 3076 7.099120 GGTATATACCGAAACCATACCGAAAT 58.901 38.462 16.11 0.00 36.50 2.17
3004 3077 6.454795 GGTATATACCGAAACCATACCGAAA 58.545 40.000 16.11 0.00 36.50 3.46
3005 3078 6.024552 GGTATATACCGAAACCATACCGAA 57.975 41.667 16.11 0.00 36.50 4.30
3006 3079 5.643379 GGTATATACCGAAACCATACCGA 57.357 43.478 16.11 0.00 36.50 4.69
3017 3090 9.683870 AACTTTGGTTTTTATGGTATATACCGA 57.316 29.630 23.82 13.54 39.83 4.69
3018 3091 9.724839 CAACTTTGGTTTTTATGGTATATACCG 57.275 33.333 23.82 9.53 40.37 4.02
3022 3095 9.816354 GCATCAACTTTGGTTTTTATGGTATAT 57.184 29.630 0.00 0.00 32.73 0.86
3023 3096 7.971168 CGCATCAACTTTGGTTTTTATGGTATA 59.029 33.333 0.00 0.00 32.73 1.47
3024 3097 6.811170 CGCATCAACTTTGGTTTTTATGGTAT 59.189 34.615 0.00 0.00 32.73 2.73
3025 3098 6.016192 TCGCATCAACTTTGGTTTTTATGGTA 60.016 34.615 0.00 0.00 32.73 3.25
3026 3099 4.987912 CGCATCAACTTTGGTTTTTATGGT 59.012 37.500 0.00 0.00 32.73 3.55
3027 3100 5.226396 TCGCATCAACTTTGGTTTTTATGG 58.774 37.500 0.00 0.00 32.73 2.74
3028 3101 6.761731 TTCGCATCAACTTTGGTTTTTATG 57.238 33.333 0.00 0.00 32.73 1.90
3029 3102 7.961325 AATTCGCATCAACTTTGGTTTTTAT 57.039 28.000 0.00 0.00 32.73 1.40
3030 3103 7.778470 AAATTCGCATCAACTTTGGTTTTTA 57.222 28.000 0.00 0.00 32.73 1.52
3031 3104 6.676237 AAATTCGCATCAACTTTGGTTTTT 57.324 29.167 0.00 0.00 32.73 1.94
3032 3105 6.676237 AAAATTCGCATCAACTTTGGTTTT 57.324 29.167 0.00 0.00 32.73 2.43
3033 3106 7.778470 TTAAAATTCGCATCAACTTTGGTTT 57.222 28.000 0.00 0.00 32.73 3.27
3034 3107 7.778470 TTTAAAATTCGCATCAACTTTGGTT 57.222 28.000 0.00 0.00 35.86 3.67
3035 3108 7.778470 TTTTAAAATTCGCATCAACTTTGGT 57.222 28.000 0.00 0.00 0.00 3.67
3036 3109 8.494347 TCATTTTAAAATTCGCATCAACTTTGG 58.506 29.630 10.77 0.00 0.00 3.28
3037 3110 9.305110 GTCATTTTAAAATTCGCATCAACTTTG 57.695 29.630 10.77 0.00 0.00 2.77
3038 3111 8.213812 CGTCATTTTAAAATTCGCATCAACTTT 58.786 29.630 10.77 0.00 0.00 2.66
3039 3112 7.381139 ACGTCATTTTAAAATTCGCATCAACTT 59.619 29.630 23.39 8.73 31.15 2.66
3040 3113 6.861055 ACGTCATTTTAAAATTCGCATCAACT 59.139 30.769 23.39 9.21 31.15 3.16
3041 3114 7.033292 ACGTCATTTTAAAATTCGCATCAAC 57.967 32.000 23.39 9.15 31.15 3.18
3042 3115 8.729529 TTACGTCATTTTAAAATTCGCATCAA 57.270 26.923 23.39 14.86 31.15 2.57
3043 3116 8.903570 ATTACGTCATTTTAAAATTCGCATCA 57.096 26.923 23.39 12.56 31.15 3.07
3072 3145 9.934190 GTGTTTTGAGTCATAAATTTGCAAATT 57.066 25.926 27.73 27.73 40.15 1.82
3073 3146 9.107177 TGTGTTTTGAGTCATAAATTTGCAAAT 57.893 25.926 18.99 18.99 0.00 2.32
3074 3147 8.484641 TGTGTTTTGAGTCATAAATTTGCAAA 57.515 26.923 15.44 15.44 0.00 3.68
3075 3148 8.659925 ATGTGTTTTGAGTCATAAATTTGCAA 57.340 26.923 0.00 0.00 0.00 4.08
3076 3149 8.659925 AATGTGTTTTGAGTCATAAATTTGCA 57.340 26.923 0.00 0.00 0.00 4.08
3077 3150 8.981647 AGAATGTGTTTTGAGTCATAAATTTGC 58.018 29.630 0.00 0.00 0.00 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.