Multiple sequence alignment - TraesCS5A01G156300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G156300 chr5A 100.000 4481 0 0 1 4481 334761535 334757055 0.000000e+00 8275.0
1 TraesCS5A01G156300 chr5A 93.548 124 5 2 1 122 659686138 659686260 9.900000e-42 182.0
2 TraesCS5A01G156300 chr5D 91.948 2459 130 27 926 3356 252219694 252217276 0.000000e+00 3382.0
3 TraesCS5A01G156300 chr5D 93.526 1143 27 14 3354 4481 252217194 252216084 0.000000e+00 1657.0
4 TraesCS5A01G156300 chr5D 85.266 828 68 21 119 908 252220490 252219679 0.000000e+00 804.0
5 TraesCS5A01G156300 chr5D 86.990 392 45 6 119 505 520681394 520681784 1.910000e-118 436.0
6 TraesCS5A01G156300 chr5D 96.491 57 2 0 569 625 283009742 283009686 1.330000e-15 95.3
7 TraesCS5A01G156300 chr5B 89.920 1508 96 22 1860 3356 284833845 284832383 0.000000e+00 1892.0
8 TraesCS5A01G156300 chr5B 96.987 896 25 1 936 1829 284834888 284833993 0.000000e+00 1504.0
9 TraesCS5A01G156300 chr5B 94.435 575 17 3 3922 4481 284830339 284829765 0.000000e+00 870.0
10 TraesCS5A01G156300 chr5B 94.771 459 18 2 3354 3812 284832301 284831849 0.000000e+00 710.0
11 TraesCS5A01G156300 chr5B 83.087 609 74 15 3892 4481 560436396 560435798 1.100000e-145 527.0
12 TraesCS5A01G156300 chr5B 96.970 66 2 0 3840 3905 284830392 284830327 1.320000e-20 111.0
13 TraesCS5A01G156300 chr2B 82.588 626 77 16 3878 4481 338746645 338746030 1.430000e-144 523.0
14 TraesCS5A01G156300 chr4A 82.923 609 75 15 3892 4481 705713381 705712783 5.140000e-144 521.0
15 TraesCS5A01G156300 chr4A 95.041 121 3 2 3 120 38687285 38687405 2.130000e-43 187.0
16 TraesCS5A01G156300 chr4A 91.304 69 6 0 557 625 494006857 494006925 1.330000e-15 95.3
17 TraesCS5A01G156300 chr7B 82.702 607 80 10 3892 4481 255044562 255045160 2.390000e-142 516.0
18 TraesCS5A01G156300 chr7B 82.759 609 75 16 3892 4481 450597049 450596452 2.390000e-142 516.0
19 TraesCS5A01G156300 chr6D 86.538 468 61 2 4015 4481 230784482 230784016 8.600000e-142 514.0
20 TraesCS5A01G156300 chr6B 86.325 468 63 1 4015 4481 396921886 396922353 4.000000e-140 508.0
21 TraesCS5A01G156300 chr6B 86.441 59 6 2 3880 3936 541951567 541951625 3.740000e-06 63.9
22 TraesCS5A01G156300 chr4D 85.714 392 46 5 119 500 498193730 498193339 5.400000e-109 405.0
23 TraesCS5A01G156300 chr4D 92.958 71 4 1 557 627 405052854 405052923 7.930000e-18 102.0
24 TraesCS5A01G156300 chr4D 89.855 69 7 0 557 625 82727612 82727680 6.170000e-14 89.8
25 TraesCS5A01G156300 chr3D 85.533 394 47 4 119 502 59849997 59849604 1.940000e-108 403.0
26 TraesCS5A01G156300 chr3D 85.316 395 46 9 119 502 85594646 85594253 9.030000e-107 398.0
27 TraesCS5A01G156300 chr3B 84.949 392 49 5 119 500 12765324 12765715 5.440000e-104 388.0
28 TraesCS5A01G156300 chr3B 84.949 392 49 5 119 500 647826176 647825785 5.440000e-104 388.0
29 TraesCS5A01G156300 chr3B 89.855 69 7 0 557 625 447622260 447622192 6.170000e-14 89.8
30 TraesCS5A01G156300 chr1B 84.949 392 49 5 119 500 453522220 453522611 5.440000e-104 388.0
31 TraesCS5A01G156300 chr7D 84.715 386 49 7 119 496 498537032 498536649 1.180000e-100 377.0
32 TraesCS5A01G156300 chr7D 91.304 69 6 0 557 625 623793517 623793585 1.330000e-15 95.3
33 TraesCS5A01G156300 chr7A 84.143 391 53 6 119 500 210560886 210561276 1.970000e-98 370.0
34 TraesCS5A01G156300 chr7A 92.969 128 5 3 1 125 674844573 674844447 2.750000e-42 183.0
35 TraesCS5A01G156300 chr7A 90.000 70 6 1 557 625 579808458 579808527 6.170000e-14 89.8
36 TraesCS5A01G156300 chr6A 95.868 121 3 1 1 119 117765558 117765438 1.270000e-45 195.0
37 TraesCS5A01G156300 chr6A 95.082 122 3 2 1 119 510365144 510365023 5.920000e-44 189.0
38 TraesCS5A01G156300 chr1A 95.798 119 3 1 3 119 250360474 250360356 1.650000e-44 191.0
39 TraesCS5A01G156300 chr1A 95.082 122 3 2 1 119 322567929 322567808 5.920000e-44 189.0
40 TraesCS5A01G156300 chr1A 95.000 120 4 1 1 118 36881936 36881817 2.130000e-43 187.0
41 TraesCS5A01G156300 chr2A 95.000 120 4 2 1 118 709267185 709267066 2.130000e-43 187.0
42 TraesCS5A01G156300 chr2A 91.429 70 6 0 557 626 549290358 549290427 3.690000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G156300 chr5A 334757055 334761535 4480 True 8275.000000 8275 100.000000 1 4481 1 chr5A.!!$R1 4480
1 TraesCS5A01G156300 chr5D 252216084 252220490 4406 True 1947.666667 3382 90.246667 119 4481 3 chr5D.!!$R2 4362
2 TraesCS5A01G156300 chr5B 284829765 284834888 5123 True 1017.400000 1892 94.616600 936 4481 5 chr5B.!!$R2 3545
3 TraesCS5A01G156300 chr5B 560435798 560436396 598 True 527.000000 527 83.087000 3892 4481 1 chr5B.!!$R1 589
4 TraesCS5A01G156300 chr2B 338746030 338746645 615 True 523.000000 523 82.588000 3878 4481 1 chr2B.!!$R1 603
5 TraesCS5A01G156300 chr4A 705712783 705713381 598 True 521.000000 521 82.923000 3892 4481 1 chr4A.!!$R1 589
6 TraesCS5A01G156300 chr7B 255044562 255045160 598 False 516.000000 516 82.702000 3892 4481 1 chr7B.!!$F1 589
7 TraesCS5A01G156300 chr7B 450596452 450597049 597 True 516.000000 516 82.759000 3892 4481 1 chr7B.!!$R1 589

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
839 876 0.180406 ACAACTCGTTCACTTGGGCT 59.820 50.0 0.0 0.0 0.00 5.19 F
1887 2061 0.321919 TTGTGATGCTGGAGTCAGGC 60.322 55.0 0.0 0.0 41.19 4.85 F
2514 2692 0.031178 CTGTTTGACAGTGCCCTTGC 59.969 55.0 0.0 0.0 41.19 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2044 2218 0.098200 TCGGAGTGCGAATACGAGTG 59.902 55.0 3.5 0.0 42.66 3.51 R
3017 3204 0.106708 GTGCCTGAACTGTCTCCACA 59.893 55.0 0.0 0.0 0.00 4.17 R
3817 4090 0.877743 CCACACACACACACACAACA 59.122 50.0 0.0 0.0 0.00 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.995511 ACTTGACTTGTGCTAAGTTGTTAA 57.004 33.333 8.07 3.01 29.65 2.01
25 26 7.385778 ACTTGACTTGTGCTAAGTTGTTAAA 57.614 32.000 8.07 0.63 29.65 1.52
26 27 7.822658 ACTTGACTTGTGCTAAGTTGTTAAAA 58.177 30.769 8.07 0.00 29.65 1.52
27 28 8.466798 ACTTGACTTGTGCTAAGTTGTTAAAAT 58.533 29.630 8.07 0.00 29.65 1.82
28 29 8.850454 TTGACTTGTGCTAAGTTGTTAAAATC 57.150 30.769 8.07 0.00 0.00 2.17
29 30 8.220755 TGACTTGTGCTAAGTTGTTAAAATCT 57.779 30.769 8.07 0.00 0.00 2.40
30 31 8.128582 TGACTTGTGCTAAGTTGTTAAAATCTG 58.871 33.333 8.07 0.00 0.00 2.90
31 32 7.996385 ACTTGTGCTAAGTTGTTAAAATCTGT 58.004 30.769 1.75 0.00 0.00 3.41
32 33 8.129211 ACTTGTGCTAAGTTGTTAAAATCTGTC 58.871 33.333 1.75 0.00 0.00 3.51
33 34 7.561021 TGTGCTAAGTTGTTAAAATCTGTCA 57.439 32.000 0.00 0.00 0.00 3.58
34 35 7.990917 TGTGCTAAGTTGTTAAAATCTGTCAA 58.009 30.769 0.00 0.00 0.00 3.18
35 36 8.128582 TGTGCTAAGTTGTTAAAATCTGTCAAG 58.871 33.333 0.00 0.00 0.00 3.02
36 37 8.342634 GTGCTAAGTTGTTAAAATCTGTCAAGA 58.657 33.333 0.00 0.00 36.69 3.02
37 38 8.342634 TGCTAAGTTGTTAAAATCTGTCAAGAC 58.657 33.333 0.00 0.00 34.48 3.01
38 39 8.560374 GCTAAGTTGTTAAAATCTGTCAAGACT 58.440 33.333 1.53 0.00 34.48 3.24
39 40 9.869844 CTAAGTTGTTAAAATCTGTCAAGACTG 57.130 33.333 1.53 1.34 34.48 3.51
40 41 8.506168 AAGTTGTTAAAATCTGTCAAGACTGA 57.494 30.769 11.38 11.38 42.16 3.41
41 42 8.506168 AGTTGTTAAAATCTGTCAAGACTGAA 57.494 30.769 12.71 0.00 41.47 3.02
42 43 8.956426 AGTTGTTAAAATCTGTCAAGACTGAAA 58.044 29.630 12.71 1.97 41.47 2.69
43 44 9.567848 GTTGTTAAAATCTGTCAAGACTGAAAA 57.432 29.630 12.71 4.48 41.47 2.29
47 48 9.748708 TTAAAATCTGTCAAGACTGAAAATTGG 57.251 29.630 12.71 0.00 41.47 3.16
48 49 5.972107 ATCTGTCAAGACTGAAAATTGGG 57.028 39.130 12.71 0.00 41.47 4.12
49 50 5.047566 TCTGTCAAGACTGAAAATTGGGA 57.952 39.130 7.25 0.00 36.54 4.37
50 51 5.445069 TCTGTCAAGACTGAAAATTGGGAA 58.555 37.500 7.25 0.00 36.54 3.97
51 52 5.890985 TCTGTCAAGACTGAAAATTGGGAAA 59.109 36.000 7.25 0.00 36.54 3.13
52 53 6.379703 TCTGTCAAGACTGAAAATTGGGAAAA 59.620 34.615 7.25 0.00 36.54 2.29
53 54 7.069826 TCTGTCAAGACTGAAAATTGGGAAAAT 59.930 33.333 7.25 0.00 36.54 1.82
54 55 6.985645 TGTCAAGACTGAAAATTGGGAAAATG 59.014 34.615 1.53 0.00 31.88 2.32
55 56 5.990996 TCAAGACTGAAAATTGGGAAAATGC 59.009 36.000 0.00 0.00 0.00 3.56
56 57 5.813513 AGACTGAAAATTGGGAAAATGCT 57.186 34.783 0.00 0.00 0.00 3.79
57 58 6.916360 AGACTGAAAATTGGGAAAATGCTA 57.084 33.333 0.00 0.00 0.00 3.49
58 59 6.928520 AGACTGAAAATTGGGAAAATGCTAG 58.071 36.000 0.00 0.00 0.00 3.42
59 60 6.721208 AGACTGAAAATTGGGAAAATGCTAGA 59.279 34.615 0.00 0.00 0.00 2.43
60 61 7.398332 AGACTGAAAATTGGGAAAATGCTAGAT 59.602 33.333 0.00 0.00 0.00 1.98
61 62 7.910584 ACTGAAAATTGGGAAAATGCTAGATT 58.089 30.769 0.00 0.00 0.00 2.40
62 63 8.377799 ACTGAAAATTGGGAAAATGCTAGATTT 58.622 29.630 0.00 0.00 0.00 2.17
63 64 9.223099 CTGAAAATTGGGAAAATGCTAGATTTT 57.777 29.630 10.68 10.68 34.30 1.82
64 65 9.571816 TGAAAATTGGGAAAATGCTAGATTTTT 57.428 25.926 11.63 8.01 32.03 1.94
86 87 7.739498 TTTTTGGTCAAGTAGTCTAATCACC 57.261 36.000 2.72 2.72 0.00 4.02
87 88 5.416271 TTGGTCAAGTAGTCTAATCACCC 57.584 43.478 6.13 0.00 0.00 4.61
88 89 3.773119 TGGTCAAGTAGTCTAATCACCCC 59.227 47.826 6.13 0.00 0.00 4.95
89 90 3.134262 GGTCAAGTAGTCTAATCACCCCC 59.866 52.174 0.00 0.00 0.00 5.40
110 111 3.563223 CCCCCTCTAGACATACTTTCGA 58.437 50.000 0.00 0.00 0.00 3.71
111 112 4.153411 CCCCCTCTAGACATACTTTCGAT 58.847 47.826 0.00 0.00 0.00 3.59
112 113 4.218852 CCCCCTCTAGACATACTTTCGATC 59.781 50.000 0.00 0.00 0.00 3.69
113 114 4.218852 CCCCTCTAGACATACTTTCGATCC 59.781 50.000 0.00 0.00 0.00 3.36
114 115 5.074115 CCCTCTAGACATACTTTCGATCCT 58.926 45.833 0.00 0.00 0.00 3.24
115 116 6.239396 CCCTCTAGACATACTTTCGATCCTA 58.761 44.000 0.00 0.00 0.00 2.94
116 117 6.149807 CCCTCTAGACATACTTTCGATCCTAC 59.850 46.154 0.00 0.00 0.00 3.18
117 118 6.711194 CCTCTAGACATACTTTCGATCCTACA 59.289 42.308 0.00 0.00 0.00 2.74
139 140 6.238648 ACAAAGGGAGTTGTAGATCGAAAAT 58.761 36.000 0.00 0.00 39.94 1.82
147 148 8.879759 GGAGTTGTAGATCGAAAATATCAAACA 58.120 33.333 0.00 0.00 0.00 2.83
159 160 9.773328 CGAAAATATCAAACATGTAATCACACT 57.227 29.630 0.00 0.00 37.54 3.55
168 169 8.443160 CAAACATGTAATCACACTAACGAAGAT 58.557 33.333 0.00 0.00 37.54 2.40
172 173 7.576750 TGTAATCACACTAACGAAGATGAAC 57.423 36.000 0.00 0.00 30.93 3.18
181 182 3.981071 ACGAAGATGAACTGGATCCAA 57.019 42.857 17.00 0.17 0.00 3.53
196 197 3.877508 GGATCCAAATAGTTCCACCGAAG 59.122 47.826 6.95 0.00 0.00 3.79
206 207 2.425592 CACCGAAGACCAGCACCA 59.574 61.111 0.00 0.00 0.00 4.17
228 229 0.317938 CGAATCCCGTGAGATCCGAC 60.318 60.000 0.00 0.00 0.00 4.79
241 242 1.313812 ATCCGACGGAGACACACCTC 61.314 60.000 22.99 0.00 34.05 3.85
253 255 0.391661 CACACCTCCACAATCCTCCG 60.392 60.000 0.00 0.00 0.00 4.63
254 256 0.544357 ACACCTCCACAATCCTCCGA 60.544 55.000 0.00 0.00 0.00 4.55
259 261 0.896479 TCCACAATCCTCCGACGACA 60.896 55.000 0.00 0.00 0.00 4.35
266 268 1.012086 TCCTCCGACGACACTATTCG 58.988 55.000 0.00 0.00 44.87 3.34
273 275 2.268298 GACGACACTATTCGCACCATT 58.732 47.619 0.00 0.00 43.06 3.16
305 307 5.221661 GGATAGGACGTGGGAGACATTATTT 60.222 44.000 0.00 0.00 0.00 1.40
311 313 5.661458 ACGTGGGAGACATTATTTCTACTG 58.339 41.667 0.00 0.00 0.00 2.74
319 321 7.202047 GGAGACATTATTTCTACTGAGGGACAT 60.202 40.741 0.00 0.00 0.00 3.06
320 322 7.731054 AGACATTATTTCTACTGAGGGACATC 58.269 38.462 0.00 0.00 0.00 3.06
324 326 1.101635 TCTACTGAGGGACATCGCCG 61.102 60.000 0.00 0.00 0.00 6.46
325 327 2.685387 CTACTGAGGGACATCGCCGC 62.685 65.000 0.00 0.00 0.00 6.53
326 328 4.899239 CTGAGGGACATCGCCGCC 62.899 72.222 0.00 0.00 0.00 6.13
342 344 4.579384 CCGCCACACAACCCCAGT 62.579 66.667 0.00 0.00 0.00 4.00
350 352 1.227853 ACAACCCCAGTCAAGACGC 60.228 57.895 0.00 0.00 36.20 5.19
366 368 7.012989 AGTCAAGACGCTTAACCTAACAAAAAT 59.987 33.333 0.00 0.00 36.20 1.82
367 369 7.112984 GTCAAGACGCTTAACCTAACAAAAATG 59.887 37.037 0.00 0.00 0.00 2.32
368 370 6.870971 AGACGCTTAACCTAACAAAAATGA 57.129 33.333 0.00 0.00 0.00 2.57
369 371 6.899114 AGACGCTTAACCTAACAAAAATGAG 58.101 36.000 0.00 0.00 0.00 2.90
371 373 7.227910 AGACGCTTAACCTAACAAAAATGAGAA 59.772 33.333 0.00 0.00 0.00 2.87
372 374 7.136772 ACGCTTAACCTAACAAAAATGAGAAC 58.863 34.615 0.00 0.00 0.00 3.01
381 383 2.488153 CAAAAATGAGAACGGGTCCTCC 59.512 50.000 0.00 0.00 0.00 4.30
439 441 1.750399 CAAAGGCCATCGGAGGTGG 60.750 63.158 5.01 0.00 39.80 4.61
496 498 1.988846 AGACTTTTCTTGGGAGGAGGG 59.011 52.381 0.00 0.00 0.00 4.30
527 529 7.524294 CCAAATATCTGGTTTGTTGTTATGC 57.476 36.000 0.00 0.00 35.35 3.14
528 530 6.534793 CCAAATATCTGGTTTGTTGTTATGCC 59.465 38.462 0.00 0.00 35.35 4.40
529 531 7.322664 CAAATATCTGGTTTGTTGTTATGCCT 58.677 34.615 0.00 0.00 33.12 4.75
530 532 8.465999 CAAATATCTGGTTTGTTGTTATGCCTA 58.534 33.333 0.00 0.00 33.12 3.93
535 537 1.745232 TTGTTGTTATGCCTAGGCCG 58.255 50.000 30.81 0.00 41.09 6.13
544 546 1.814169 GCCTAGGCCGTGCTTACAC 60.814 63.158 24.19 0.00 43.76 2.90
552 554 3.632700 GTGCTTACACGCCGACAA 58.367 55.556 0.00 0.00 36.98 3.18
557 559 0.638746 CTTACACGCCGACAACGATC 59.361 55.000 0.00 0.00 42.66 3.69
564 566 1.526986 CGCCGACAACGATCATTTGAC 60.527 52.381 10.33 4.31 42.66 3.18
567 569 2.993220 CCGACAACGATCATTTGACTCA 59.007 45.455 10.33 0.00 42.66 3.41
648 650 4.329528 GTGTGTCCGTTACAACTTACAACA 59.670 41.667 0.00 0.00 40.63 3.33
658 660 5.243426 ACAACTTACAACACATGGACAAC 57.757 39.130 0.00 0.00 0.00 3.32
672 674 7.837689 ACACATGGACAACTACCTAGTTCTATA 59.162 37.037 0.00 0.00 44.19 1.31
673 675 8.861086 CACATGGACAACTACCTAGTTCTATAT 58.139 37.037 0.00 0.00 44.19 0.86
782 789 5.841810 TCACCAAAATGACTCCAATTGTTC 58.158 37.500 4.43 0.00 0.00 3.18
831 868 1.202132 GCAGCAACAACAACTCGTTCA 60.202 47.619 0.00 0.00 34.86 3.18
839 876 0.180406 ACAACTCGTTCACTTGGGCT 59.820 50.000 0.00 0.00 0.00 5.19
864 901 1.619332 GATCCCCTCCTGTACGAATCC 59.381 57.143 0.00 0.00 0.00 3.01
867 904 1.411787 CCCCTCCTGTACGAATCCTCT 60.412 57.143 0.00 0.00 0.00 3.69
894 931 4.122776 CCATGAAGATCGTAAACCAGAGG 58.877 47.826 0.00 0.00 0.00 3.69
908 945 1.548582 CCAGAGGCCAACAGAAACCAT 60.549 52.381 5.01 0.00 0.00 3.55
909 946 1.815003 CAGAGGCCAACAGAAACCATC 59.185 52.381 5.01 0.00 0.00 3.51
910 947 1.707427 AGAGGCCAACAGAAACCATCT 59.293 47.619 5.01 0.00 39.68 2.90
922 959 5.982890 AGAAACCATCTGTACAATTTGGG 57.017 39.130 17.85 9.27 36.88 4.12
923 960 4.772100 AGAAACCATCTGTACAATTTGGGG 59.228 41.667 17.85 8.15 36.88 4.96
924 961 2.456577 ACCATCTGTACAATTTGGGGC 58.543 47.619 17.85 0.00 0.00 5.80
925 962 2.225242 ACCATCTGTACAATTTGGGGCA 60.225 45.455 17.85 0.00 0.00 5.36
926 963 2.428171 CCATCTGTACAATTTGGGGCAG 59.572 50.000 0.00 6.16 0.00 4.85
927 964 1.544724 TCTGTACAATTTGGGGCAGC 58.455 50.000 0.00 0.00 0.00 5.25
928 965 0.532115 CTGTACAATTTGGGGCAGCC 59.468 55.000 1.26 1.26 0.00 4.85
929 966 0.902516 TGTACAATTTGGGGCAGCCC 60.903 55.000 24.23 24.23 44.51 5.19
1089 1133 2.045242 CTCGAGTCCACTCCGGGA 60.045 66.667 3.62 0.00 39.79 5.14
1392 1436 1.304134 GGCGGATGGTTTGGAGGTT 60.304 57.895 0.00 0.00 0.00 3.50
1409 1453 2.485795 TTTGCGTCCACTTGGGTGC 61.486 57.895 0.00 0.75 41.75 5.01
1639 1683 4.842139 CGGAAGGTTAGAGACATTTTCG 57.158 45.455 0.00 0.00 31.36 3.46
1829 1876 4.158579 TCACTCATATCTGTGTGACAGTCC 59.841 45.833 10.81 0.00 45.86 3.85
1830 1877 4.082026 CACTCATATCTGTGTGACAGTCCA 60.082 45.833 7.34 0.00 46.03 4.02
1831 1878 4.081972 ACTCATATCTGTGTGACAGTCCAC 60.082 45.833 12.77 12.77 46.03 4.02
1832 1879 4.089361 TCATATCTGTGTGACAGTCCACT 58.911 43.478 17.83 5.98 46.03 4.00
1833 1880 5.261216 TCATATCTGTGTGACAGTCCACTA 58.739 41.667 17.83 10.07 46.03 2.74
1834 1881 5.358160 TCATATCTGTGTGACAGTCCACTAG 59.642 44.000 17.83 14.22 46.03 2.57
1835 1882 2.945456 TCTGTGTGACAGTCCACTAGT 58.055 47.619 17.83 0.00 46.03 2.57
1836 1883 2.885266 TCTGTGTGACAGTCCACTAGTC 59.115 50.000 17.83 0.00 46.03 2.59
1837 1884 2.887783 CTGTGTGACAGTCCACTAGTCT 59.112 50.000 17.83 0.00 41.19 3.24
1838 1885 2.623416 TGTGTGACAGTCCACTAGTCTG 59.377 50.000 17.83 8.19 37.89 3.51
1839 1886 2.623889 GTGTGACAGTCCACTAGTCTGT 59.376 50.000 13.87 13.87 43.72 3.41
1840 1887 3.819337 GTGTGACAGTCCACTAGTCTGTA 59.181 47.826 13.94 0.00 41.58 2.74
1854 1901 6.366332 CACTAGTCTGTAGTGGTTTTCATGTC 59.634 42.308 0.00 0.00 40.76 3.06
1869 2043 9.691362 GGTTTTCATGTCGCCATAATATAAATT 57.309 29.630 0.00 0.00 0.00 1.82
1878 2052 7.482743 GTCGCCATAATATAAATTGTGATGCTG 59.517 37.037 0.00 0.00 36.58 4.41
1887 2061 0.321919 TTGTGATGCTGGAGTCAGGC 60.322 55.000 0.00 0.00 41.19 4.85
1900 2074 4.228210 TGGAGTCAGGCTAAAAGGATGAAT 59.772 41.667 0.00 0.00 0.00 2.57
1907 2081 3.701040 GGCTAAAAGGATGAATCTTGGCA 59.299 43.478 0.00 0.00 0.00 4.92
1936 2110 8.338072 TCCTTTGCGTTAAATTTAAGATGGTA 57.662 30.769 10.92 0.00 0.00 3.25
2039 2213 4.193826 TGTCTTCCTGCACTCTATGAAC 57.806 45.455 0.00 0.00 0.00 3.18
2041 2215 4.223700 TGTCTTCCTGCACTCTATGAACAT 59.776 41.667 0.00 0.00 0.00 2.71
2042 2216 5.422012 TGTCTTCCTGCACTCTATGAACATA 59.578 40.000 0.00 0.00 0.00 2.29
2043 2217 5.982516 GTCTTCCTGCACTCTATGAACATAG 59.017 44.000 13.67 13.67 41.58 2.23
2044 2218 4.327982 TCCTGCACTCTATGAACATAGC 57.672 45.455 14.69 6.82 40.37 2.97
2045 2219 3.706086 TCCTGCACTCTATGAACATAGCA 59.294 43.478 14.69 10.24 40.37 3.49
2046 2220 3.806521 CCTGCACTCTATGAACATAGCAC 59.193 47.826 14.69 6.61 40.37 4.40
2047 2221 4.442612 CCTGCACTCTATGAACATAGCACT 60.443 45.833 14.69 0.39 40.37 4.40
2048 2222 4.686972 TGCACTCTATGAACATAGCACTC 58.313 43.478 14.69 6.87 40.37 3.51
2049 2223 3.733224 GCACTCTATGAACATAGCACTCG 59.267 47.826 14.69 5.20 40.37 4.18
2050 2224 4.734989 GCACTCTATGAACATAGCACTCGT 60.735 45.833 14.69 6.09 40.37 4.18
2051 2225 5.505819 GCACTCTATGAACATAGCACTCGTA 60.506 44.000 14.69 0.00 40.37 3.43
2052 2226 6.673106 CACTCTATGAACATAGCACTCGTAT 58.327 40.000 14.69 0.00 40.37 3.06
2053 2227 7.142021 CACTCTATGAACATAGCACTCGTATT 58.858 38.462 14.69 0.00 40.37 1.89
2054 2228 7.324856 CACTCTATGAACATAGCACTCGTATTC 59.675 40.741 14.69 0.00 40.37 1.75
2076 2250 6.381481 TCGCACTCCGAATTATTTACTCTA 57.619 37.500 0.00 0.00 44.21 2.43
2085 2259 9.595823 TCCGAATTATTTACTCTACCTTTTCAG 57.404 33.333 0.00 0.00 0.00 3.02
2128 2302 9.967346 TTCCGATGATGTGTGTTTTTATTTTAA 57.033 25.926 0.00 0.00 0.00 1.52
2306 2484 8.454106 GTTTGCTCTAAATTCTATGCTCTTTGA 58.546 33.333 0.00 0.00 0.00 2.69
2361 2539 6.202188 AGACTAACAAACATTAACTGGTGTCG 59.798 38.462 0.00 0.00 0.00 4.35
2377 2555 2.035576 GTGTCGACTTTGAGGTACCTGT 59.964 50.000 22.10 11.15 0.00 4.00
2391 2569 3.756963 GGTACCTGTCATGGGTTTTTCTC 59.243 47.826 4.06 0.00 38.19 2.87
2406 2584 3.452755 TTTCTCGGTATCATGATGCGT 57.547 42.857 18.72 0.00 0.00 5.24
2412 2590 2.094258 CGGTATCATGATGCGTAATGGC 59.906 50.000 18.72 1.54 0.00 4.40
2449 2627 6.014070 GGAAGACTCCTAAGAATAGAATCCCC 60.014 46.154 0.00 0.00 38.88 4.81
2451 2629 6.453476 AGACTCCTAAGAATAGAATCCCCAA 58.547 40.000 0.00 0.00 0.00 4.12
2452 2630 6.327887 AGACTCCTAAGAATAGAATCCCCAAC 59.672 42.308 0.00 0.00 0.00 3.77
2453 2631 6.213525 ACTCCTAAGAATAGAATCCCCAACT 58.786 40.000 0.00 0.00 0.00 3.16
2455 2633 7.138054 TCCTAAGAATAGAATCCCCAACTTC 57.862 40.000 0.00 0.00 0.00 3.01
2456 2634 6.101296 TCCTAAGAATAGAATCCCCAACTTCC 59.899 42.308 0.00 0.00 0.00 3.46
2500 2678 7.133133 TCTTCCTAACTAAACTGACCTGTTT 57.867 36.000 9.38 9.38 42.10 2.83
2514 2692 0.031178 CTGTTTGACAGTGCCCTTGC 59.969 55.000 0.00 0.00 41.19 4.01
2518 2696 1.108727 TTGACAGTGCCCTTGCCTTG 61.109 55.000 0.00 0.00 36.33 3.61
2539 2717 7.378966 CCTTGATCTCACAAGTTTACAGACTA 58.621 38.462 0.00 0.00 43.72 2.59
2544 2722 9.344309 GATCTCACAAGTTTACAGACTAGTTAC 57.656 37.037 0.00 0.00 0.00 2.50
2579 2760 3.249080 GGCGCGCTATGTAATTTTCCTTA 59.751 43.478 32.29 0.00 0.00 2.69
2581 2762 5.449304 GCGCGCTATGTAATTTTCCTTATT 58.551 37.500 26.67 0.00 0.00 1.40
2608 2789 2.152016 GTTGTTTCTGTAGGGCCAGTC 58.848 52.381 6.18 0.00 34.02 3.51
2611 2792 3.244582 TGTTTCTGTAGGGCCAGTCTTA 58.755 45.455 6.18 0.00 34.02 2.10
2617 2798 1.616628 AGGGCCAGTCTTACCCCTG 60.617 63.158 6.18 0.00 45.95 4.45
2619 2800 1.205460 GGGCCAGTCTTACCCCTGAA 61.205 60.000 4.39 0.00 37.70 3.02
2625 2806 4.566907 GCCAGTCTTACCCCTGAATTGTTA 60.567 45.833 0.00 0.00 0.00 2.41
2632 2813 3.356290 ACCCCTGAATTGTTATGTGAGC 58.644 45.455 0.00 0.00 0.00 4.26
2634 2815 4.227300 ACCCCTGAATTGTTATGTGAGCTA 59.773 41.667 0.00 0.00 0.00 3.32
2635 2816 5.103940 ACCCCTGAATTGTTATGTGAGCTAT 60.104 40.000 0.00 0.00 0.00 2.97
2650 2831 7.356089 TGTGAGCTATATTAATATACGGGGG 57.644 40.000 10.55 3.46 0.00 5.40
2680 2861 4.262292 CCTTTGTAGGGTTTAAGTTTGCCC 60.262 45.833 0.00 0.00 41.36 5.36
2686 2867 5.381184 AGGGTTTAAGTTTGCCCAAAAAT 57.619 34.783 10.46 0.00 43.42 1.82
2687 2868 5.129634 AGGGTTTAAGTTTGCCCAAAAATG 58.870 37.500 10.46 0.00 43.42 2.32
2688 2869 4.884744 GGGTTTAAGTTTGCCCAAAAATGT 59.115 37.500 0.00 0.00 40.76 2.71
2692 2879 7.815068 GGTTTAAGTTTGCCCAAAAATGTTTTT 59.185 29.630 0.00 0.00 40.75 1.94
2697 2884 8.978564 AGTTTGCCCAAAAATGTTTTTAAAAG 57.021 26.923 0.14 0.00 38.23 2.27
2714 2901 9.685828 TTTTTAAAAGGTTCATCATTAGGAACG 57.314 29.630 0.14 0.00 45.21 3.95
2715 2902 5.897377 AAAAGGTTCATCATTAGGAACGG 57.103 39.130 0.00 0.00 45.21 4.44
2763 2950 4.581077 TTTTGTGCTGCACATAATGTCA 57.419 36.364 33.25 15.88 44.16 3.58
2764 2951 4.581077 TTTGTGCTGCACATAATGTCAA 57.419 36.364 33.25 20.52 44.16 3.18
2765 2952 4.581077 TTGTGCTGCACATAATGTCAAA 57.419 36.364 33.25 14.42 44.16 2.69
2766 2953 4.787260 TGTGCTGCACATAATGTCAAAT 57.213 36.364 29.99 0.00 39.62 2.32
2767 2954 4.487019 TGTGCTGCACATAATGTCAAATG 58.513 39.130 29.99 0.00 39.62 2.32
2773 2960 5.968254 TGCACATAATGTCAAATGCTGAAT 58.032 33.333 0.00 0.00 35.22 2.57
2778 2965 9.146984 CACATAATGTCAAATGCTGAATTCTTT 57.853 29.630 7.05 0.00 35.22 2.52
2809 2996 9.374711 ACAAGTTTATTTCTTTGGAATAGGGAA 57.625 29.630 0.00 0.00 0.00 3.97
2848 3035 2.179427 CCAGTACATGAGGTCTCACCA 58.821 52.381 0.00 0.00 41.95 4.17
2904 3091 7.226918 AGCCTTTGTTACAAGTAAGAAGTCTTC 59.773 37.037 4.26 4.26 37.40 2.87
2917 3104 8.093927 AGTAAGAAGTCTTCTTCAAATCAGGAG 58.906 37.037 27.30 0.00 46.62 3.69
2918 3105 5.544136 GAAGTCTTCTTCAAATCAGGAGC 57.456 43.478 5.27 0.00 46.50 4.70
2920 3107 3.259374 AGTCTTCTTCAAATCAGGAGCGA 59.741 43.478 0.00 0.00 0.00 4.93
2922 3109 2.015736 TCTTCAAATCAGGAGCGAGC 57.984 50.000 0.00 0.00 0.00 5.03
2926 3113 3.391665 AAATCAGGAGCGAGCCCCG 62.392 63.158 0.00 0.00 42.21 5.73
2986 3173 5.412594 GCAGTTCACTCACTCCAATTTATCA 59.587 40.000 0.00 0.00 0.00 2.15
2990 3177 9.334947 AGTTCACTCACTCCAATTTATCATATG 57.665 33.333 0.00 0.00 0.00 1.78
3032 3219 2.074576 CAGCATGTGGAGACAGTTCAG 58.925 52.381 0.00 0.00 44.46 3.02
3074 3261 5.535030 GGACATAGAAACAAAAACCTGGAGT 59.465 40.000 0.00 0.00 0.00 3.85
3089 3276 2.171237 CTGGAGTGATGTATCTTGGGCA 59.829 50.000 0.00 0.00 0.00 5.36
3132 3319 7.162082 ACACATTATTTCTTTCTCGGACTTCT 58.838 34.615 0.00 0.00 0.00 2.85
3159 3346 9.746711 GCAGTTATATTTTCTGCGATATTGTAG 57.253 33.333 1.71 1.71 43.49 2.74
3217 3404 0.534877 GCTGGACACATCACCACACA 60.535 55.000 0.00 0.00 32.44 3.72
3232 3419 5.776208 TCACCACACAGATACAGGTTAGTTA 59.224 40.000 0.00 0.00 0.00 2.24
3245 3432 2.483188 GGTTAGTTATCCTGTGCTCCCG 60.483 54.545 0.00 0.00 0.00 5.14
3248 3435 0.535335 GTTATCCTGTGCTCCCGTGA 59.465 55.000 0.00 0.00 0.00 4.35
3262 3449 2.824936 TCCCGTGACGTATTTAACCTCA 59.175 45.455 3.64 0.00 0.00 3.86
3263 3450 2.925563 CCCGTGACGTATTTAACCTCAC 59.074 50.000 3.64 0.00 39.42 3.51
3283 3470 8.816894 ACCTCACATCCAAGTTATATCGAATAT 58.183 33.333 0.00 0.00 0.00 1.28
3311 3498 4.217334 TCTTAAGATATGAGAGCAGCGAGG 59.783 45.833 0.00 0.00 0.00 4.63
3312 3499 0.602562 AGATATGAGAGCAGCGAGGC 59.397 55.000 0.00 0.00 0.00 4.70
3321 3508 0.745845 AGCAGCGAGGCCTTGTATTG 60.746 55.000 21.55 17.01 0.00 1.90
3324 3511 0.107654 AGCGAGGCCTTGTATTGGAC 60.108 55.000 21.55 2.65 0.00 4.02
3329 3516 3.682718 CGAGGCCTTGTATTGGACAGATT 60.683 47.826 6.77 0.00 39.88 2.40
3381 3654 7.283127 TGTTAGATCAATAATTCAGCAACCCTC 59.717 37.037 0.00 0.00 0.00 4.30
3390 3663 1.425066 TCAGCAACCCTCCATTTCTGT 59.575 47.619 0.00 0.00 0.00 3.41
3621 3894 9.731819 AAAGTAATTCGTCCTTTTCTTTCTTTC 57.268 29.630 0.00 0.00 0.00 2.62
3642 3915 3.928343 TTTTTGAAACCTGCGGTCG 57.072 47.368 0.69 0.00 33.12 4.79
3702 3975 8.814038 AACTATTCATTTGCTCCTCTGTTTAT 57.186 30.769 0.00 0.00 0.00 1.40
3788 4061 6.817765 TTAGAGAAATGGTTCCATGTTGTC 57.182 37.500 5.02 9.41 33.92 3.18
3812 4085 1.585521 GAGATGCGTACCGTGTCCG 60.586 63.158 0.00 0.00 0.00 4.79
3813 4086 2.180017 GATGCGTACCGTGTCCGT 59.820 61.111 0.00 0.00 0.00 4.69
3815 4088 2.807631 GATGCGTACCGTGTCCGTGT 62.808 60.000 0.00 0.00 0.00 4.49
3817 4090 2.332514 CGTACCGTGTCCGTGTGT 59.667 61.111 0.00 0.00 0.00 3.72
3818 4091 2.012414 CGTACCGTGTCCGTGTGTG 61.012 63.158 0.00 0.00 0.00 3.82
3819 4092 1.066257 GTACCGTGTCCGTGTGTGT 59.934 57.895 0.00 0.00 0.00 3.72
3834 4107 1.265635 GTGTGTTGTGTGTGTGTGTGT 59.734 47.619 0.00 0.00 0.00 3.72
3835 4108 1.265365 TGTGTTGTGTGTGTGTGTGTG 59.735 47.619 0.00 0.00 0.00 3.82
3836 4109 0.877743 TGTTGTGTGTGTGTGTGTGG 59.122 50.000 0.00 0.00 0.00 4.17
3837 4110 0.878416 GTTGTGTGTGTGTGTGTGGT 59.122 50.000 0.00 0.00 0.00 4.16
3838 4111 0.877743 TTGTGTGTGTGTGTGTGGTG 59.122 50.000 0.00 0.00 0.00 4.17
4352 6077 1.539827 GACACCAAATTTCCTCCCACG 59.460 52.381 0.00 0.00 0.00 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.495361 TTTAACAACTTAGCACAAGTCAAGTA 57.505 30.769 4.41 0.00 31.20 2.24
1 2 6.995511 TTAACAACTTAGCACAAGTCAAGT 57.004 33.333 4.41 2.41 32.73 3.16
2 3 8.856490 ATTTTAACAACTTAGCACAAGTCAAG 57.144 30.769 4.41 1.90 0.00 3.02
3 4 8.682710 AGATTTTAACAACTTAGCACAAGTCAA 58.317 29.630 4.41 0.00 0.00 3.18
4 5 8.128582 CAGATTTTAACAACTTAGCACAAGTCA 58.871 33.333 4.41 0.00 0.00 3.41
5 6 8.129211 ACAGATTTTAACAACTTAGCACAAGTC 58.871 33.333 4.41 0.00 0.00 3.01
6 7 7.996385 ACAGATTTTAACAACTTAGCACAAGT 58.004 30.769 0.00 0.00 0.00 3.16
7 8 8.128582 TGACAGATTTTAACAACTTAGCACAAG 58.871 33.333 0.00 0.00 0.00 3.16
8 9 7.990917 TGACAGATTTTAACAACTTAGCACAA 58.009 30.769 0.00 0.00 0.00 3.33
9 10 7.561021 TGACAGATTTTAACAACTTAGCACA 57.439 32.000 0.00 0.00 0.00 4.57
10 11 8.342634 TCTTGACAGATTTTAACAACTTAGCAC 58.657 33.333 0.00 0.00 0.00 4.40
11 12 8.342634 GTCTTGACAGATTTTAACAACTTAGCA 58.657 33.333 0.00 0.00 0.00 3.49
12 13 8.560374 AGTCTTGACAGATTTTAACAACTTAGC 58.440 33.333 3.49 0.00 0.00 3.09
13 14 9.869844 CAGTCTTGACAGATTTTAACAACTTAG 57.130 33.333 3.49 0.00 0.00 2.18
14 15 9.607988 TCAGTCTTGACAGATTTTAACAACTTA 57.392 29.630 3.49 0.00 0.00 2.24
15 16 8.506168 TCAGTCTTGACAGATTTTAACAACTT 57.494 30.769 3.49 0.00 0.00 2.66
16 17 8.506168 TTCAGTCTTGACAGATTTTAACAACT 57.494 30.769 3.49 0.00 31.71 3.16
17 18 9.567848 TTTTCAGTCTTGACAGATTTTAACAAC 57.432 29.630 3.49 0.00 31.71 3.32
21 22 9.748708 CCAATTTTCAGTCTTGACAGATTTTAA 57.251 29.630 3.49 0.00 31.71 1.52
22 23 8.359642 CCCAATTTTCAGTCTTGACAGATTTTA 58.640 33.333 3.49 0.00 31.71 1.52
23 24 7.069826 TCCCAATTTTCAGTCTTGACAGATTTT 59.930 33.333 3.49 0.00 31.71 1.82
24 25 6.550854 TCCCAATTTTCAGTCTTGACAGATTT 59.449 34.615 3.49 0.00 31.71 2.17
25 26 6.070656 TCCCAATTTTCAGTCTTGACAGATT 58.929 36.000 3.49 0.00 31.71 2.40
26 27 5.634118 TCCCAATTTTCAGTCTTGACAGAT 58.366 37.500 3.49 0.00 31.71 2.90
27 28 5.047566 TCCCAATTTTCAGTCTTGACAGA 57.952 39.130 3.49 0.00 31.71 3.41
28 29 5.772825 TTCCCAATTTTCAGTCTTGACAG 57.227 39.130 3.49 0.00 31.71 3.51
29 30 6.537453 TTTTCCCAATTTTCAGTCTTGACA 57.463 33.333 3.49 0.00 31.71 3.58
30 31 6.073602 GCATTTTCCCAATTTTCAGTCTTGAC 60.074 38.462 0.00 0.00 31.71 3.18
31 32 5.990996 GCATTTTCCCAATTTTCAGTCTTGA 59.009 36.000 0.00 0.00 0.00 3.02
32 33 5.993441 AGCATTTTCCCAATTTTCAGTCTTG 59.007 36.000 0.00 0.00 0.00 3.02
33 34 6.178607 AGCATTTTCCCAATTTTCAGTCTT 57.821 33.333 0.00 0.00 0.00 3.01
34 35 5.813513 AGCATTTTCCCAATTTTCAGTCT 57.186 34.783 0.00 0.00 0.00 3.24
35 36 6.924111 TCTAGCATTTTCCCAATTTTCAGTC 58.076 36.000 0.00 0.00 0.00 3.51
36 37 6.916360 TCTAGCATTTTCCCAATTTTCAGT 57.084 33.333 0.00 0.00 0.00 3.41
37 38 8.782339 AAATCTAGCATTTTCCCAATTTTCAG 57.218 30.769 0.00 0.00 0.00 3.02
38 39 9.571816 AAAAATCTAGCATTTTCCCAATTTTCA 57.428 25.926 11.05 0.00 31.53 2.69
62 63 6.713450 GGGTGATTAGACTACTTGACCAAAAA 59.287 38.462 0.00 0.00 0.00 1.94
63 64 6.235664 GGGTGATTAGACTACTTGACCAAAA 58.764 40.000 0.00 0.00 0.00 2.44
64 65 5.280317 GGGGTGATTAGACTACTTGACCAAA 60.280 44.000 0.00 0.00 0.00 3.28
65 66 4.224370 GGGGTGATTAGACTACTTGACCAA 59.776 45.833 0.00 0.00 0.00 3.67
66 67 3.773119 GGGGTGATTAGACTACTTGACCA 59.227 47.826 0.00 0.00 0.00 4.02
67 68 3.134262 GGGGGTGATTAGACTACTTGACC 59.866 52.174 0.00 0.00 0.00 4.02
68 69 4.403585 GGGGGTGATTAGACTACTTGAC 57.596 50.000 0.00 0.00 0.00 3.18
89 90 3.563223 TCGAAAGTATGTCTAGAGGGGG 58.437 50.000 0.00 0.00 0.00 5.40
90 91 4.218852 GGATCGAAAGTATGTCTAGAGGGG 59.781 50.000 0.00 0.00 0.00 4.79
91 92 5.074115 AGGATCGAAAGTATGTCTAGAGGG 58.926 45.833 0.00 0.00 0.00 4.30
92 93 6.711194 TGTAGGATCGAAAGTATGTCTAGAGG 59.289 42.308 0.00 0.00 0.00 3.69
93 94 7.731882 TGTAGGATCGAAAGTATGTCTAGAG 57.268 40.000 0.00 0.00 0.00 2.43
94 95 8.515695 TTTGTAGGATCGAAAGTATGTCTAGA 57.484 34.615 0.00 0.00 0.00 2.43
95 96 7.863375 CCTTTGTAGGATCGAAAGTATGTCTAG 59.137 40.741 0.00 0.00 45.05 2.43
96 97 7.201884 CCCTTTGTAGGATCGAAAGTATGTCTA 60.202 40.741 0.00 0.00 45.05 2.59
97 98 6.407074 CCCTTTGTAGGATCGAAAGTATGTCT 60.407 42.308 0.00 0.00 45.05 3.41
98 99 5.753921 CCCTTTGTAGGATCGAAAGTATGTC 59.246 44.000 0.00 0.00 45.05 3.06
99 100 5.424252 TCCCTTTGTAGGATCGAAAGTATGT 59.576 40.000 0.00 0.00 45.05 2.29
100 101 5.914033 TCCCTTTGTAGGATCGAAAGTATG 58.086 41.667 0.00 0.00 45.05 2.39
101 102 5.661759 ACTCCCTTTGTAGGATCGAAAGTAT 59.338 40.000 0.00 0.00 45.05 2.12
102 103 5.021458 ACTCCCTTTGTAGGATCGAAAGTA 58.979 41.667 0.00 0.00 45.05 2.24
103 104 3.838903 ACTCCCTTTGTAGGATCGAAAGT 59.161 43.478 0.00 0.00 45.05 2.66
104 105 4.473477 ACTCCCTTTGTAGGATCGAAAG 57.527 45.455 0.00 0.00 45.05 2.62
105 106 4.041198 ACAACTCCCTTTGTAGGATCGAAA 59.959 41.667 0.00 0.00 45.05 3.46
106 107 3.581332 ACAACTCCCTTTGTAGGATCGAA 59.419 43.478 0.00 0.00 45.05 3.71
107 108 3.170717 ACAACTCCCTTTGTAGGATCGA 58.829 45.455 0.00 0.00 45.05 3.59
108 109 3.611766 ACAACTCCCTTTGTAGGATCG 57.388 47.619 0.00 0.00 45.05 3.69
114 115 5.988310 TTCGATCTACAACTCCCTTTGTA 57.012 39.130 0.00 0.00 40.29 2.41
115 116 4.884668 TTCGATCTACAACTCCCTTTGT 57.115 40.909 0.00 0.00 42.46 2.83
116 117 6.743575 ATTTTCGATCTACAACTCCCTTTG 57.256 37.500 0.00 0.00 0.00 2.77
117 118 8.265055 TGATATTTTCGATCTACAACTCCCTTT 58.735 33.333 0.00 0.00 0.00 3.11
133 134 9.773328 AGTGTGATTACATGTTTGATATTTTCG 57.227 29.630 2.30 0.00 39.39 3.46
139 140 8.989653 TCGTTAGTGTGATTACATGTTTGATA 57.010 30.769 2.30 0.00 39.39 2.15
147 148 8.035394 AGTTCATCTTCGTTAGTGTGATTACAT 58.965 33.333 0.00 0.00 39.39 2.29
159 160 5.414789 TTGGATCCAGTTCATCTTCGTTA 57.585 39.130 15.53 0.00 0.00 3.18
168 169 5.253330 GTGGAACTATTTGGATCCAGTTCA 58.747 41.667 30.58 20.32 45.58 3.18
172 173 3.118408 TCGGTGGAACTATTTGGATCCAG 60.118 47.826 15.53 5.82 42.35 3.86
181 182 2.354805 GCTGGTCTTCGGTGGAACTATT 60.355 50.000 0.00 0.00 36.74 1.73
196 197 1.305930 GGATTCGGTTGGTGCTGGTC 61.306 60.000 0.00 0.00 0.00 4.02
206 207 0.464452 GGATCTCACGGGATTCGGTT 59.536 55.000 0.00 0.00 44.45 4.44
241 242 0.736325 GTGTCGTCGGAGGATTGTGG 60.736 60.000 3.47 0.00 0.00 4.17
253 255 1.922570 ATGGTGCGAATAGTGTCGTC 58.077 50.000 0.00 0.00 43.06 4.20
254 256 1.999735 CAATGGTGCGAATAGTGTCGT 59.000 47.619 0.00 0.00 43.06 4.34
259 261 0.751643 GCCCCAATGGTGCGAATAGT 60.752 55.000 0.00 0.00 36.04 2.12
266 268 0.396974 TATCCAAGCCCCAATGGTGC 60.397 55.000 0.00 0.00 37.94 5.01
273 275 1.306654 ACGTCCTATCCAAGCCCCA 60.307 57.895 0.00 0.00 0.00 4.96
279 281 1.272816 TGTCTCCCACGTCCTATCCAA 60.273 52.381 0.00 0.00 0.00 3.53
280 282 0.333652 TGTCTCCCACGTCCTATCCA 59.666 55.000 0.00 0.00 0.00 3.41
305 307 1.101635 CGGCGATGTCCCTCAGTAGA 61.102 60.000 0.00 0.00 0.00 2.59
325 327 4.579384 ACTGGGGTTGTGTGGCGG 62.579 66.667 0.00 0.00 0.00 6.13
326 328 2.978010 GACTGGGGTTGTGTGGCG 60.978 66.667 0.00 0.00 0.00 5.69
335 337 1.053424 TTAAGCGTCTTGACTGGGGT 58.947 50.000 2.86 0.00 0.00 4.95
341 343 5.662211 TTTGTTAGGTTAAGCGTCTTGAC 57.338 39.130 0.00 6.13 0.00 3.18
342 344 6.680874 TTTTTGTTAGGTTAAGCGTCTTGA 57.319 33.333 0.00 0.00 0.00 3.02
350 352 7.081976 CCCGTTCTCATTTTTGTTAGGTTAAG 58.918 38.462 0.00 0.00 0.00 1.85
406 408 1.152376 TTTGGGCCATGGACTTGCA 60.152 52.632 19.55 3.82 0.00 4.08
432 434 4.547367 CCGATTCGCCCCACCTCC 62.547 72.222 0.00 0.00 0.00 4.30
458 460 1.965754 CTCCTTTCTCCTCCTGCCGG 61.966 65.000 0.00 0.00 0.00 6.13
460 462 0.539518 GTCTCCTTTCTCCTCCTGCC 59.460 60.000 0.00 0.00 0.00 4.85
461 463 1.567357 AGTCTCCTTTCTCCTCCTGC 58.433 55.000 0.00 0.00 0.00 4.85
463 465 4.498493 AGAAAAGTCTCCTTTCTCCTCCT 58.502 43.478 0.00 0.00 40.01 3.69
465 467 5.000591 CCAAGAAAAGTCTCCTTTCTCCTC 58.999 45.833 0.95 0.00 40.01 3.71
471 473 3.722101 TCCTCCCAAGAAAAGTCTCCTTT 59.278 43.478 0.00 0.00 42.73 3.11
520 522 1.153249 GCACGGCCTAGGCATAACA 60.153 57.895 34.09 0.00 44.11 2.41
521 523 0.463833 AAGCACGGCCTAGGCATAAC 60.464 55.000 34.09 20.16 44.11 1.89
522 524 1.124780 TAAGCACGGCCTAGGCATAA 58.875 50.000 34.09 9.82 44.11 1.90
523 525 0.391597 GTAAGCACGGCCTAGGCATA 59.608 55.000 34.09 13.98 44.11 3.14
524 526 1.146263 GTAAGCACGGCCTAGGCAT 59.854 57.895 34.09 19.57 44.11 4.40
525 527 2.287274 TGTAAGCACGGCCTAGGCA 61.287 57.895 34.09 10.01 44.11 4.75
526 528 1.814169 GTGTAAGCACGGCCTAGGC 60.814 63.158 26.55 26.55 35.75 3.93
527 529 4.515404 GTGTAAGCACGGCCTAGG 57.485 61.111 3.67 3.67 35.75 3.02
535 537 1.203313 GTTGTCGGCGTGTAAGCAC 59.797 57.895 6.85 0.00 41.97 4.40
544 546 0.718904 TCAAATGATCGTTGTCGGCG 59.281 50.000 0.00 0.00 37.69 6.46
552 554 7.101652 ACTACATACTGAGTCAAATGATCGT 57.898 36.000 17.74 10.35 0.00 3.73
557 559 9.770097 AATATGGACTACATACTGAGTCAAATG 57.230 33.333 11.73 11.73 44.41 2.32
597 599 6.005823 TCCCTCCGTTCACGAATATAAGATA 58.994 40.000 0.00 0.00 43.02 1.98
614 616 1.654954 CGGACACACTACTCCCTCCG 61.655 65.000 0.00 0.00 35.15 4.63
751 757 7.831691 TGGAGTCATTTTGGTGATTTTTCTA 57.168 32.000 0.00 0.00 0.00 2.10
752 758 6.729690 TGGAGTCATTTTGGTGATTTTTCT 57.270 33.333 0.00 0.00 0.00 2.52
753 759 7.967890 ATTGGAGTCATTTTGGTGATTTTTC 57.032 32.000 0.00 0.00 0.00 2.29
759 766 5.598005 AGAACAATTGGAGTCATTTTGGTGA 59.402 36.000 10.83 0.00 0.00 4.02
782 789 6.985188 TCCAATTGGAGTCGATTCTAAAAG 57.015 37.500 23.63 6.48 39.78 2.27
831 868 1.649271 GGGGATCATCCAGCCCAAGT 61.649 60.000 5.89 0.00 43.89 3.16
839 876 1.757764 CGTACAGGAGGGGATCATCCA 60.758 57.143 5.89 0.00 45.64 3.41
864 901 1.967066 ACGATCTTCATGGGCCTAGAG 59.033 52.381 4.53 0.00 0.00 2.43
867 904 3.181458 GGTTTACGATCTTCATGGGCCTA 60.181 47.826 4.53 0.00 0.00 3.93
908 945 1.544724 GCTGCCCCAAATTGTACAGA 58.455 50.000 10.13 0.00 0.00 3.41
909 946 0.532115 GGCTGCCCCAAATTGTACAG 59.468 55.000 7.66 0.00 0.00 2.74
910 947 2.664825 GGCTGCCCCAAATTGTACA 58.335 52.632 7.66 0.00 0.00 2.90
921 958 3.070576 GTTGGTGATGGGCTGCCC 61.071 66.667 30.97 30.97 45.71 5.36
922 959 3.443045 CGTTGGTGATGGGCTGCC 61.443 66.667 11.05 11.05 0.00 4.85
923 960 4.120331 GCGTTGGTGATGGGCTGC 62.120 66.667 0.00 0.00 0.00 5.25
924 961 3.443045 GGCGTTGGTGATGGGCTG 61.443 66.667 0.00 0.00 0.00 4.85
927 964 3.124921 GACGGCGTTGGTGATGGG 61.125 66.667 16.19 0.00 0.00 4.00
928 965 2.047274 AGACGGCGTTGGTGATGG 60.047 61.111 16.19 0.00 0.00 3.51
929 966 1.667830 ACAGACGGCGTTGGTGATG 60.668 57.895 16.19 9.17 0.00 3.07
930 967 1.667830 CACAGACGGCGTTGGTGAT 60.668 57.895 29.22 11.24 0.00 3.06
931 968 2.279851 CACAGACGGCGTTGGTGA 60.280 61.111 29.22 0.00 0.00 4.02
932 969 2.587753 ACACAGACGGCGTTGGTG 60.588 61.111 30.36 30.36 35.66 4.17
933 970 2.279918 GACACAGACGGCGTTGGT 60.280 61.111 16.19 13.10 0.00 3.67
934 971 1.227999 ATTGACACAGACGGCGTTGG 61.228 55.000 16.19 12.37 0.00 3.77
1048 1092 4.761058 AGCCGCGGAAGGAGGAGA 62.761 66.667 33.48 0.00 37.92 3.71
1089 1133 4.189188 CGCGCGGTAGTGTAGGCT 62.189 66.667 24.84 0.00 0.00 4.58
1230 1274 2.685017 ATGGGCGCTGTGGAGAGA 60.685 61.111 7.64 0.00 0.00 3.10
1383 1427 0.106918 AGTGGACGCAAACCTCCAAA 60.107 50.000 0.00 0.00 38.33 3.28
1384 1428 0.106918 AAGTGGACGCAAACCTCCAA 60.107 50.000 0.00 0.00 38.33 3.53
1392 1436 2.904866 GCACCCAAGTGGACGCAA 60.905 61.111 0.00 0.00 44.69 4.85
1402 1446 3.869473 GAGGCACGTACGCACCCAA 62.869 63.158 16.72 0.00 0.00 4.12
1577 1621 4.127171 TGTAACACTGCCTTCAAGAAGAC 58.873 43.478 11.25 0.14 40.79 3.01
1636 1680 2.629210 CGTTGCCGTTGAAGCGAA 59.371 55.556 0.00 0.00 0.00 4.70
1639 1683 3.477224 TTGCCGTTGCCGTTGAAGC 62.477 57.895 0.00 0.00 36.33 3.86
1653 1697 2.954989 GGGAGAAATCTGAATCCTTGCC 59.045 50.000 0.00 0.00 32.18 4.52
1829 1876 6.223852 ACATGAAAACCACTACAGACTAGTG 58.776 40.000 0.00 0.00 43.26 2.74
1830 1877 6.420913 ACATGAAAACCACTACAGACTAGT 57.579 37.500 0.00 0.00 0.00 2.57
1831 1878 5.573282 CGACATGAAAACCACTACAGACTAG 59.427 44.000 0.00 0.00 0.00 2.57
1832 1879 5.466819 CGACATGAAAACCACTACAGACTA 58.533 41.667 0.00 0.00 0.00 2.59
1833 1880 4.307432 CGACATGAAAACCACTACAGACT 58.693 43.478 0.00 0.00 0.00 3.24
1834 1881 3.120649 GCGACATGAAAACCACTACAGAC 60.121 47.826 0.00 0.00 0.00 3.51
1835 1882 3.064207 GCGACATGAAAACCACTACAGA 58.936 45.455 0.00 0.00 0.00 3.41
1836 1883 2.159627 GGCGACATGAAAACCACTACAG 59.840 50.000 0.00 0.00 0.00 2.74
1837 1884 2.147958 GGCGACATGAAAACCACTACA 58.852 47.619 0.00 0.00 0.00 2.74
1838 1885 2.147958 TGGCGACATGAAAACCACTAC 58.852 47.619 0.00 0.00 33.40 2.73
1839 1886 2.552599 TGGCGACATGAAAACCACTA 57.447 45.000 0.00 0.00 33.40 2.74
1840 1887 3.412722 TGGCGACATGAAAACCACT 57.587 47.368 0.00 0.00 33.40 4.00
1854 1901 6.748658 CCAGCATCACAATTTATATTATGGCG 59.251 38.462 0.00 0.00 0.00 5.69
1869 2043 1.196766 AGCCTGACTCCAGCATCACA 61.197 55.000 0.00 0.00 39.07 3.58
1878 2052 3.914426 TCATCCTTTTAGCCTGACTCC 57.086 47.619 0.00 0.00 0.00 3.85
1887 2061 6.956202 AGATGCCAAGATTCATCCTTTTAG 57.044 37.500 0.00 0.00 39.79 1.85
1900 2074 1.167851 CGCAAAGGAAGATGCCAAGA 58.832 50.000 0.00 0.00 39.39 3.02
1907 2081 9.573133 CATCTTAAATTTAACGCAAAGGAAGAT 57.427 29.630 6.54 3.61 35.35 2.40
2039 2213 2.721603 GAGTGCGAATACGAGTGCTATG 59.278 50.000 0.00 0.00 42.66 2.23
2041 2215 1.065102 GGAGTGCGAATACGAGTGCTA 59.935 52.381 0.00 0.00 42.66 3.49
2042 2216 0.179134 GGAGTGCGAATACGAGTGCT 60.179 55.000 0.00 0.00 42.66 4.40
2043 2217 1.472276 CGGAGTGCGAATACGAGTGC 61.472 60.000 0.00 0.00 42.66 4.40
2044 2218 0.098200 TCGGAGTGCGAATACGAGTG 59.902 55.000 3.50 0.00 42.66 3.51
2045 2219 0.806868 TTCGGAGTGCGAATACGAGT 59.193 50.000 15.99 0.00 42.66 4.18
2046 2220 2.121116 ATTCGGAGTGCGAATACGAG 57.879 50.000 27.93 0.00 42.66 4.18
2047 2221 2.572191 AATTCGGAGTGCGAATACGA 57.428 45.000 28.97 5.23 42.66 3.43
2048 2222 4.966850 AATAATTCGGAGTGCGAATACG 57.033 40.909 28.97 0.00 42.93 3.06
2049 2223 7.381678 AGAGTAAATAATTCGGAGTGCGAATAC 59.618 37.037 28.97 22.39 35.35 1.89
2050 2224 7.431249 AGAGTAAATAATTCGGAGTGCGAATA 58.569 34.615 28.97 18.31 35.35 1.75
2051 2225 6.281405 AGAGTAAATAATTCGGAGTGCGAAT 58.719 36.000 24.43 24.43 37.64 3.34
2052 2226 5.657474 AGAGTAAATAATTCGGAGTGCGAA 58.343 37.500 21.95 21.95 0.00 4.70
2053 2227 5.258456 AGAGTAAATAATTCGGAGTGCGA 57.742 39.130 1.26 1.26 0.00 5.10
2054 2228 5.401674 GGTAGAGTAAATAATTCGGAGTGCG 59.598 44.000 0.00 0.00 0.00 5.34
2128 2302 7.020827 TCCTCCTACAGAAATGTTGAGATTT 57.979 36.000 8.38 0.00 0.00 2.17
2138 2312 3.833070 ACTGACGTTCCTCCTACAGAAAT 59.167 43.478 0.00 0.00 0.00 2.17
2281 2455 8.565896 TCAAAGAGCATAGAATTTAGAGCAAA 57.434 30.769 0.00 0.00 0.00 3.68
2306 2484 4.665009 TCCTCCACTATCTGGCCATTTATT 59.335 41.667 5.51 0.00 40.39 1.40
2314 2492 4.526970 TGAATTTTCCTCCACTATCTGGC 58.473 43.478 0.00 0.00 40.39 4.85
2361 2539 3.600388 CCATGACAGGTACCTCAAAGTC 58.400 50.000 12.84 16.60 0.00 3.01
2377 2555 4.561500 TGATACCGAGAAAAACCCATGA 57.438 40.909 0.00 0.00 0.00 3.07
2391 2569 2.094258 GCCATTACGCATCATGATACCG 59.906 50.000 20.17 20.17 0.00 4.02
2406 2584 5.250774 GTCTTCCATATAGAAGGGGCCATTA 59.749 44.000 2.10 0.00 42.94 1.90
2412 2590 4.757692 AGGAGTCTTCCATATAGAAGGGG 58.242 47.826 10.48 0.00 46.64 4.79
2500 2678 1.529010 CAAGGCAAGGGCACTGTCA 60.529 57.895 0.00 0.00 43.71 3.58
2514 2692 6.226787 AGTCTGTAAACTTGTGAGATCAAGG 58.773 40.000 10.44 0.00 46.11 3.61
2518 2696 9.344309 GTAACTAGTCTGTAAACTTGTGAGATC 57.656 37.037 0.00 0.00 35.79 2.75
2539 2717 2.549349 CGCCAAGGTAAGTGTGGTAACT 60.549 50.000 0.00 0.00 34.71 2.24
2544 2722 2.677003 CGCGCCAAGGTAAGTGTGG 61.677 63.158 0.00 0.00 35.39 4.17
2579 2760 4.398319 CCTACAGAAACAACCCTGACAAT 58.602 43.478 0.00 0.00 34.65 2.71
2581 2762 2.105821 CCCTACAGAAACAACCCTGACA 59.894 50.000 0.00 0.00 34.65 3.58
2608 2789 5.066505 GCTCACATAACAATTCAGGGGTAAG 59.933 44.000 0.00 0.00 0.00 2.34
2611 2792 3.010584 AGCTCACATAACAATTCAGGGGT 59.989 43.478 0.00 0.00 0.00 4.95
2625 2806 7.787904 TCCCCCGTATATTAATATAGCTCACAT 59.212 37.037 14.26 0.00 0.00 3.21
2632 2813 6.356186 GGGCTCCCCCGTATATTAATATAG 57.644 45.833 14.26 9.22 42.67 1.31
2688 2869 9.685828 CGTTCCTAATGATGAACCTTTTAAAAA 57.314 29.630 1.66 0.00 38.05 1.94
2692 2879 6.478129 ACCGTTCCTAATGATGAACCTTTTA 58.522 36.000 0.00 0.00 38.05 1.52
2697 2884 4.258543 TCAACCGTTCCTAATGATGAACC 58.741 43.478 0.00 0.00 38.05 3.62
2710 2897 7.930513 AAAAGAATTCAAGAATCAACCGTTC 57.069 32.000 8.44 0.00 0.00 3.95
2749 2936 4.989044 TCAGCATTTGACATTATGTGCAG 58.011 39.130 1.24 0.00 35.17 4.41
2758 2945 8.981647 GTGTTAAAAGAATTCAGCATTTGACAT 58.018 29.630 17.78 0.00 33.82 3.06
2759 2946 7.978414 TGTGTTAAAAGAATTCAGCATTTGACA 59.022 29.630 8.44 12.17 34.94 3.58
2760 2947 8.351495 TGTGTTAAAAGAATTCAGCATTTGAC 57.649 30.769 8.44 10.08 34.94 3.18
2761 2948 8.939201 TTGTGTTAAAAGAATTCAGCATTTGA 57.061 26.923 8.44 0.00 0.00 2.69
2762 2949 8.819974 ACTTGTGTTAAAAGAATTCAGCATTTG 58.180 29.630 8.44 0.00 0.00 2.32
2763 2950 8.947055 ACTTGTGTTAAAAGAATTCAGCATTT 57.053 26.923 8.44 6.08 0.00 2.32
2764 2951 8.947055 AACTTGTGTTAAAAGAATTCAGCATT 57.053 26.923 8.44 0.00 34.15 3.56
2765 2952 8.947055 AAACTTGTGTTAAAAGAATTCAGCAT 57.053 26.923 8.44 0.00 34.96 3.79
2848 3035 1.003580 AGTTCACGCTTGGACCATGAT 59.996 47.619 11.47 0.00 30.24 2.45
2904 3091 1.012841 GGCTCGCTCCTGATTTGAAG 58.987 55.000 0.00 0.00 0.00 3.02
2922 3109 1.746615 CACAATGTCTCAGCCGGGG 60.747 63.158 2.18 0.00 0.00 5.73
2926 3113 1.673168 GGGATCACAATGTCTCAGCC 58.327 55.000 0.00 0.00 0.00 4.85
2966 3153 9.330063 GTCATATGATAAATTGGAGTGAGTGAA 57.670 33.333 9.02 0.00 0.00 3.18
3017 3204 0.106708 GTGCCTGAACTGTCTCCACA 59.893 55.000 0.00 0.00 0.00 4.17
3022 3209 2.706190 AGTAAAGGTGCCTGAACTGTCT 59.294 45.455 5.30 0.00 0.00 3.41
3032 3219 2.124411 TCCTCCCATAGTAAAGGTGCC 58.876 52.381 0.00 0.00 0.00 5.01
3074 3261 3.877559 CTTCACTGCCCAAGATACATCA 58.122 45.455 0.00 0.00 0.00 3.07
3089 3276 4.460263 TGTGTACCTGAAATTGCTTCACT 58.540 39.130 0.00 0.00 39.20 3.41
3176 3363 4.209080 GCGCCCTAATTTAAATTGCATGAC 59.791 41.667 21.19 6.95 0.00 3.06
3232 3419 2.982130 GTCACGGGAGCACAGGAT 59.018 61.111 0.00 0.00 0.00 3.24
3248 3435 5.801380 ACTTGGATGTGAGGTTAAATACGT 58.199 37.500 0.00 0.00 0.00 3.57
3283 3470 7.013369 TCGCTGCTCTCATATCTTAAGAAGTTA 59.987 37.037 9.71 0.00 0.00 2.24
3289 3476 4.484236 CCTCGCTGCTCTCATATCTTAAG 58.516 47.826 0.00 0.00 0.00 1.85
3303 3490 1.718757 CCAATACAAGGCCTCGCTGC 61.719 60.000 5.23 0.00 0.00 5.25
3307 3494 1.207089 TCTGTCCAATACAAGGCCTCG 59.793 52.381 5.23 0.00 37.74 4.63
3311 3498 9.555727 TTACTATTAATCTGTCCAATACAAGGC 57.444 33.333 0.00 0.00 37.74 4.35
3352 3539 9.109393 GGTTGCTGAATTATTGATCTAACACTA 57.891 33.333 0.00 0.00 0.00 2.74
3363 3636 5.603170 AATGGAGGGTTGCTGAATTATTG 57.397 39.130 0.00 0.00 0.00 1.90
3390 3663 6.126796 TGGGCAGTTGAGATGTCATTATTAGA 60.127 38.462 0.00 0.00 30.85 2.10
3435 3708 3.121929 TCCTCAGTTATTGCTCTCCCT 57.878 47.619 0.00 0.00 0.00 4.20
3437 3710 6.648725 GTCATATTCCTCAGTTATTGCTCTCC 59.351 42.308 0.00 0.00 0.00 3.71
3634 3907 0.937304 CAATAATGGACCGACCGCAG 59.063 55.000 0.00 0.00 42.61 5.18
3639 3912 3.458189 CTGGTCTCAATAATGGACCGAC 58.542 50.000 11.52 0.00 43.89 4.79
3642 3915 3.933861 ACCTGGTCTCAATAATGGACC 57.066 47.619 10.08 10.08 42.54 4.46
3788 4061 4.711980 GGTACGCATCTCTCACGG 57.288 61.111 0.00 0.00 0.00 4.94
3812 4085 1.265635 ACACACACACACAACACACAC 59.734 47.619 0.00 0.00 0.00 3.82
3813 4086 1.265365 CACACACACACACAACACACA 59.735 47.619 0.00 0.00 0.00 3.72
3815 4088 1.265365 CACACACACACACACAACACA 59.735 47.619 0.00 0.00 0.00 3.72
3817 4090 0.877743 CCACACACACACACACAACA 59.122 50.000 0.00 0.00 0.00 3.33
3818 4091 0.878416 ACCACACACACACACACAAC 59.122 50.000 0.00 0.00 0.00 3.32
3819 4092 0.877743 CACCACACACACACACACAA 59.122 50.000 0.00 0.00 0.00 3.33
3834 4107 2.519063 CCAGGCACAGCAACACCA 60.519 61.111 0.00 0.00 0.00 4.17
3835 4108 3.297620 CCCAGGCACAGCAACACC 61.298 66.667 0.00 0.00 0.00 4.16
3836 4109 2.203337 TCCCAGGCACAGCAACAC 60.203 61.111 0.00 0.00 0.00 3.32
3837 4110 2.113774 CTCCCAGGCACAGCAACA 59.886 61.111 0.00 0.00 0.00 3.33
3838 4111 2.674380 CCTCCCAGGCACAGCAAC 60.674 66.667 0.00 0.00 0.00 4.17
4352 6077 7.976135 ATCAACTTCAGGCTATTATGTGATC 57.024 36.000 0.00 0.00 0.00 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.