Multiple sequence alignment - TraesCS5A01G154800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G154800 chr5A 100.000 5895 0 0 1 5895 332214230 332220124 0.000000e+00 10887
1 TraesCS5A01G154800 chr5B 94.647 3269 102 38 2652 5893 282266209 282269431 0.000000e+00 5000
2 TraesCS5A01G154800 chr5B 94.282 1679 51 17 743 2415 282264569 282266208 0.000000e+00 2527
3 TraesCS5A01G154800 chr5B 87.336 229 8 7 397 619 282264365 282264578 5.900000e-60 243
4 TraesCS5A01G154800 chr5B 95.349 129 5 1 619 747 563355471 563355344 2.790000e-48 204
5 TraesCS5A01G154800 chr5D 95.981 2762 81 13 2652 5395 249524925 249527674 0.000000e+00 4458
6 TraesCS5A01G154800 chr5D 93.743 895 33 12 745 1626 249523302 249524186 0.000000e+00 1321
7 TraesCS5A01G154800 chr5D 94.141 751 16 17 1670 2415 249524197 249524924 0.000000e+00 1118
8 TraesCS5A01G154800 chr5D 82.066 513 52 20 117 619 249522827 249523309 9.200000e-108 401
9 TraesCS5A01G154800 chr5D 77.089 371 26 20 5461 5804 249527929 249528267 6.110000e-35 159
10 TraesCS5A01G154800 chr4D 82.129 526 71 20 4393 4907 116819741 116819228 4.220000e-116 429
11 TraesCS5A01G154800 chr4D 90.756 238 22 0 1067 1304 116823020 116822783 9.530000e-83 318
12 TraesCS5A01G154800 chr4D 76.461 616 101 29 3590 4192 116820903 116820319 1.610000e-75 294
13 TraesCS5A01G154800 chr4D 93.814 97 6 0 1429 1525 116822669 116822573 4.760000e-31 147
14 TraesCS5A01G154800 chr4D 97.403 77 2 0 2168 2244 116821745 116821669 1.330000e-26 132
15 TraesCS5A01G154800 chr4B 82.627 472 62 14 4435 4897 178851221 178850761 3.310000e-107 399
16 TraesCS5A01G154800 chr4B 93.976 249 12 3 2415 2660 72900048 72900296 2.010000e-99 374
17 TraesCS5A01G154800 chr4B 90.336 238 23 0 1067 1304 178853877 178853640 4.440000e-81 313
18 TraesCS5A01G154800 chr4B 76.183 613 104 27 3590 4192 178851900 178851320 9.670000e-73 285
19 TraesCS5A01G154800 chr4B 95.968 124 5 0 620 743 241182084 241181961 1.000000e-47 202
20 TraesCS5A01G154800 chr4B 80.889 225 35 8 1081 1301 418752298 418752518 2.820000e-38 171
21 TraesCS5A01G154800 chr4B 94.845 97 5 0 1429 1525 178853522 178853426 1.020000e-32 152
22 TraesCS5A01G154800 chr4B 97.403 77 2 0 2168 2244 178852777 178852701 1.330000e-26 132
23 TraesCS5A01G154800 chr4A 83.559 444 56 15 4436 4873 459630829 459631261 3.310000e-107 399
24 TraesCS5A01G154800 chr4A 90.336 238 23 0 1064 1301 459627685 459627922 4.440000e-81 313
25 TraesCS5A01G154800 chr4A 94.845 97 5 0 1429 1525 459628043 459628139 1.020000e-32 152
26 TraesCS5A01G154800 chr4A 96.104 77 3 0 2168 2244 459628804 459628880 6.200000e-25 126
27 TraesCS5A01G154800 chr3B 95.851 241 9 1 2415 2654 497096334 497096574 7.160000e-104 388
28 TraesCS5A01G154800 chr3B 95.041 242 11 1 2415 2655 12174775 12175016 4.310000e-101 379
29 TraesCS5A01G154800 chr3B 97.581 124 3 0 620 743 246163850 246163973 4.630000e-51 213
30 TraesCS5A01G154800 chr3B 96.774 124 4 0 620 743 187490197 187490320 2.150000e-49 207
31 TraesCS5A01G154800 chr3B 95.833 120 5 0 624 743 767289720 767289839 1.680000e-45 195
32 TraesCS5A01G154800 chr7A 95.455 242 10 1 2415 2655 699150275 699150516 9.270000e-103 385
33 TraesCS5A01G154800 chr7A 94.628 242 12 1 2415 2655 653023054 653023295 2.010000e-99 374
34 TraesCS5A01G154800 chr7A 97.600 125 3 0 619 743 33544114 33544238 1.290000e-51 215
35 TraesCS5A01G154800 chr6A 94.422 251 12 2 2414 2662 5356259 5356009 9.270000e-103 385
36 TraesCS5A01G154800 chr2A 95.082 244 11 1 2413 2655 753083161 753083404 3.330000e-102 383
37 TraesCS5A01G154800 chr2A 95.021 241 12 0 2415 2655 764895310 764895550 4.310000e-101 379
38 TraesCS5A01G154800 chr2A 95.161 124 6 0 620 743 753232350 753232473 4.660000e-46 196
39 TraesCS5A01G154800 chr2A 80.603 232 37 8 1081 1308 38915265 38915038 7.850000e-39 172
40 TraesCS5A01G154800 chr1A 94.672 244 12 1 2415 2657 506278268 506278025 1.550000e-100 377
41 TraesCS5A01G154800 chr2B 96.094 128 5 0 616 743 121691633 121691506 5.990000e-50 209
42 TraesCS5A01G154800 chr2B 79.070 258 45 9 1057 1309 58846556 58846303 1.020000e-37 169
43 TraesCS5A01G154800 chr7B 95.200 125 6 0 619 743 482819897 482820021 1.300000e-46 198
44 TraesCS5A01G154800 chr2D 79.767 257 43 9 1057 1308 35686256 35686004 1.690000e-40 178
45 TraesCS5A01G154800 chr3A 74.834 302 42 14 117 412 463122634 463122361 8.080000e-19 106


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G154800 chr5A 332214230 332220124 5894 False 10887.0 10887 100.000000 1 5895 1 chr5A.!!$F1 5894
1 TraesCS5A01G154800 chr5B 282264365 282269431 5066 False 2590.0 5000 92.088333 397 5893 3 chr5B.!!$F1 5496
2 TraesCS5A01G154800 chr5D 249522827 249528267 5440 False 1491.4 4458 88.604000 117 5804 5 chr5D.!!$F1 5687
3 TraesCS5A01G154800 chr4D 116819228 116823020 3792 True 264.0 429 88.112600 1067 4907 5 chr4D.!!$R1 3840
4 TraesCS5A01G154800 chr4B 178850761 178853877 3116 True 256.2 399 88.278800 1067 4897 5 chr4B.!!$R2 3830
5 TraesCS5A01G154800 chr4A 459627685 459631261 3576 False 247.5 399 91.211000 1064 4873 4 chr4A.!!$F1 3809

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
697 706 0.036388 CGTCTGTTAGGCCCACATGT 60.036 55.000 0.00 0.0 0.00 3.21 F
730 739 0.037605 GCAGGTACAGTTACGGCACT 60.038 55.000 0.00 0.0 32.32 4.40 F
2424 3020 0.042731 CCTCCACCTTACTCCCTCCA 59.957 60.000 0.00 0.0 0.00 3.86 F
2451 3047 0.109412 ATATAGTACGCCCGCGCTTC 60.109 55.000 9.37 0.0 44.19 3.86 F
2571 3167 0.386113 TATAATTTTTGCCCCGCCGC 59.614 50.000 0.00 0.0 0.00 6.53 F
2615 3212 0.934496 CGGTCAAAGTTGAAGCACGA 59.066 50.000 0.00 0.0 39.21 4.35 F
2816 3416 1.035139 CACCTGCCTGCTTTTTCAGT 58.965 50.000 0.00 0.0 32.32 3.41 F
3971 4632 1.550524 CTGGTACCTGTGCTCAAGCTA 59.449 52.381 14.36 0.0 42.66 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2445 3041 0.179124 AGTTGGATCTCGAGAAGCGC 60.179 55.000 20.91 0.0 40.61 5.92 R
2596 3193 0.934496 TCGTGCTTCAACTTTGACCG 59.066 50.000 0.00 0.0 36.83 4.79 R
3478 4129 0.465460 TGGTTCCAGTCCACACTTGC 60.465 55.000 0.00 0.0 0.00 4.01 R
4221 4915 1.016130 CCTGCACTGTCATCGACCAC 61.016 60.000 0.00 0.0 0.00 4.16 R
4473 5547 1.970640 CATCCATAGTCCCGATCCACA 59.029 52.381 0.00 0.0 0.00 4.17 R
4623 5701 6.944290 AGCATGCACAAGTACAATATATGGAT 59.056 34.615 21.98 0.0 0.00 3.41 R
4760 5839 1.741770 GGACGGTGATGAGGTGCAC 60.742 63.158 8.80 8.8 0.00 4.57 R
5686 7026 0.320421 CGTCCGGCCAAGAAAGAGAA 60.320 55.000 2.24 0.0 0.00 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.163818 GAACAACATGACACCGGAGA 57.836 50.000 9.46 0.00 0.00 3.71
20 21 2.069273 GAACAACATGACACCGGAGAG 58.931 52.381 9.46 0.00 0.00 3.20
22 23 0.608130 CAACATGACACCGGAGAGGA 59.392 55.000 9.46 0.00 45.00 3.71
23 24 1.001974 CAACATGACACCGGAGAGGAA 59.998 52.381 9.46 0.00 45.00 3.36
24 25 0.898320 ACATGACACCGGAGAGGAAG 59.102 55.000 9.46 0.00 45.00 3.46
25 26 0.460987 CATGACACCGGAGAGGAAGC 60.461 60.000 9.46 0.00 45.00 3.86
26 27 0.616111 ATGACACCGGAGAGGAAGCT 60.616 55.000 9.46 0.00 45.00 3.74
27 28 0.832135 TGACACCGGAGAGGAAGCTT 60.832 55.000 9.46 0.00 45.00 3.74
28 29 0.390472 GACACCGGAGAGGAAGCTTG 60.390 60.000 9.46 0.00 45.00 4.01
29 30 1.078848 CACCGGAGAGGAAGCTTGG 60.079 63.158 9.46 0.00 45.00 3.61
30 31 1.536662 ACCGGAGAGGAAGCTTGGT 60.537 57.895 9.46 0.00 45.00 3.67
31 32 1.128188 ACCGGAGAGGAAGCTTGGTT 61.128 55.000 9.46 0.00 45.00 3.67
32 33 0.391793 CCGGAGAGGAAGCTTGGTTC 60.392 60.000 2.10 4.19 45.00 3.62
33 34 0.737715 CGGAGAGGAAGCTTGGTTCG 60.738 60.000 2.10 0.00 0.00 3.95
34 35 0.321996 GGAGAGGAAGCTTGGTTCGT 59.678 55.000 2.10 7.35 0.00 3.85
35 36 1.433534 GAGAGGAAGCTTGGTTCGTG 58.566 55.000 2.10 0.00 0.00 4.35
36 37 1.000955 GAGAGGAAGCTTGGTTCGTGA 59.999 52.381 2.10 0.00 0.00 4.35
37 38 1.416401 AGAGGAAGCTTGGTTCGTGAA 59.584 47.619 2.10 0.00 0.00 3.18
38 39 1.531578 GAGGAAGCTTGGTTCGTGAAC 59.468 52.381 2.10 4.15 40.45 3.18
46 47 3.550656 GTTCGTGAACCGCCAGAG 58.449 61.111 1.21 0.00 35.36 3.35
47 48 2.027625 GTTCGTGAACCGCCAGAGG 61.028 63.158 1.21 0.00 35.36 3.69
48 49 2.204461 TTCGTGAACCGCCAGAGGA 61.204 57.895 0.00 0.00 36.19 3.71
49 50 2.125912 CGTGAACCGCCAGAGGAG 60.126 66.667 0.00 0.00 34.73 3.69
50 51 2.636412 CGTGAACCGCCAGAGGAGA 61.636 63.158 0.00 0.00 34.73 3.71
51 52 1.901085 GTGAACCGCCAGAGGAGAT 59.099 57.895 0.00 0.00 34.73 2.75
52 53 0.460987 GTGAACCGCCAGAGGAGATG 60.461 60.000 0.00 0.00 34.73 2.90
53 54 0.904865 TGAACCGCCAGAGGAGATGT 60.905 55.000 0.00 0.00 34.73 3.06
54 55 0.250513 GAACCGCCAGAGGAGATGTT 59.749 55.000 0.00 0.00 34.73 2.71
55 56 0.250513 AACCGCCAGAGGAGATGTTC 59.749 55.000 0.00 0.00 34.73 3.18
56 57 1.227089 CCGCCAGAGGAGATGTTCG 60.227 63.158 0.00 0.00 0.00 3.95
57 58 1.513158 CGCCAGAGGAGATGTTCGT 59.487 57.895 0.00 0.00 0.00 3.85
58 59 0.526524 CGCCAGAGGAGATGTTCGTC 60.527 60.000 0.00 0.00 40.25 4.20
59 60 0.526524 GCCAGAGGAGATGTTCGTCG 60.527 60.000 0.00 0.00 43.72 5.12
60 61 0.101399 CCAGAGGAGATGTTCGTCGG 59.899 60.000 0.00 0.00 43.72 4.79
61 62 1.095600 CAGAGGAGATGTTCGTCGGA 58.904 55.000 0.00 0.00 43.72 4.55
62 63 1.064803 CAGAGGAGATGTTCGTCGGAG 59.935 57.143 0.00 0.00 43.72 4.63
63 64 1.065345 AGAGGAGATGTTCGTCGGAGA 60.065 52.381 0.00 0.00 43.72 3.71
64 65 1.950909 GAGGAGATGTTCGTCGGAGAT 59.049 52.381 0.00 0.00 40.67 2.75
65 66 1.678627 AGGAGATGTTCGTCGGAGATG 59.321 52.381 0.00 0.00 46.63 2.90
66 67 1.269309 GGAGATGTTCGTCGGAGATGG 60.269 57.143 0.00 0.00 45.05 3.51
67 68 0.103208 AGATGTTCGTCGGAGATGGC 59.897 55.000 0.00 0.00 45.05 4.40
68 69 0.876342 GATGTTCGTCGGAGATGGCC 60.876 60.000 0.00 0.00 45.05 5.36
69 70 1.330655 ATGTTCGTCGGAGATGGCCT 61.331 55.000 3.32 0.00 45.05 5.19
70 71 1.519455 GTTCGTCGGAGATGGCCTG 60.519 63.158 3.32 0.00 45.05 4.85
71 72 1.680989 TTCGTCGGAGATGGCCTGA 60.681 57.895 3.32 0.00 45.05 3.86
72 73 1.254975 TTCGTCGGAGATGGCCTGAA 61.255 55.000 3.32 0.00 45.05 3.02
73 74 1.519455 CGTCGGAGATGGCCTGAAC 60.519 63.158 3.32 0.00 40.43 3.18
74 75 1.901085 GTCGGAGATGGCCTGAACT 59.099 57.895 3.32 0.00 40.67 3.01
75 76 1.112113 GTCGGAGATGGCCTGAACTA 58.888 55.000 3.32 0.00 40.67 2.24
76 77 1.067821 GTCGGAGATGGCCTGAACTAG 59.932 57.143 3.32 0.00 40.67 2.57
77 78 4.170136 GTCGGAGATGGCCTGAACTAGG 62.170 59.091 3.32 0.00 45.22 3.02
93 94 4.913126 GGTGAGACCTTAGCCGTG 57.087 61.111 0.00 0.00 34.73 4.94
94 95 1.218316 GGTGAGACCTTAGCCGTGG 59.782 63.158 0.00 0.00 34.73 4.94
95 96 1.255667 GGTGAGACCTTAGCCGTGGA 61.256 60.000 0.00 0.00 34.73 4.02
96 97 0.108756 GTGAGACCTTAGCCGTGGAC 60.109 60.000 0.00 0.00 0.00 4.02
97 98 0.251653 TGAGACCTTAGCCGTGGACT 60.252 55.000 0.00 0.00 0.00 3.85
98 99 1.005097 TGAGACCTTAGCCGTGGACTA 59.995 52.381 0.00 0.00 0.00 2.59
99 100 2.308690 GAGACCTTAGCCGTGGACTAT 58.691 52.381 0.00 0.00 0.00 2.12
100 101 2.032620 AGACCTTAGCCGTGGACTATG 58.967 52.381 0.00 0.00 0.00 2.23
101 102 1.068741 GACCTTAGCCGTGGACTATGG 59.931 57.143 14.82 14.82 39.60 2.74
102 103 1.120530 CCTTAGCCGTGGACTATGGT 58.879 55.000 0.00 0.00 37.79 3.55
103 104 1.068741 CCTTAGCCGTGGACTATGGTC 59.931 57.143 0.00 0.00 41.43 4.02
104 105 1.754803 CTTAGCCGTGGACTATGGTCA 59.245 52.381 11.67 0.00 43.77 4.02
105 106 2.082140 TAGCCGTGGACTATGGTCAT 57.918 50.000 11.67 0.00 43.77 3.06
106 107 1.204146 AGCCGTGGACTATGGTCATT 58.796 50.000 11.67 0.00 43.77 2.57
107 108 1.139058 AGCCGTGGACTATGGTCATTC 59.861 52.381 11.67 0.16 43.77 2.67
108 109 1.134521 GCCGTGGACTATGGTCATTCA 60.135 52.381 11.67 0.00 43.77 2.57
109 110 2.485479 GCCGTGGACTATGGTCATTCAT 60.485 50.000 11.67 0.00 43.77 2.57
110 111 3.808728 CCGTGGACTATGGTCATTCATT 58.191 45.455 11.67 0.00 43.77 2.57
111 112 4.199310 CCGTGGACTATGGTCATTCATTT 58.801 43.478 11.67 0.00 43.77 2.32
112 113 4.640201 CCGTGGACTATGGTCATTCATTTT 59.360 41.667 11.67 0.00 43.77 1.82
113 114 5.449041 CCGTGGACTATGGTCATTCATTTTG 60.449 44.000 11.67 0.00 43.77 2.44
114 115 5.353956 CGTGGACTATGGTCATTCATTTTGA 59.646 40.000 11.67 0.00 43.77 2.69
115 116 6.128035 CGTGGACTATGGTCATTCATTTTGAA 60.128 38.462 11.67 0.00 43.77 2.69
116 117 7.253422 GTGGACTATGGTCATTCATTTTGAAG 58.747 38.462 11.67 0.00 43.77 3.02
117 118 6.377996 TGGACTATGGTCATTCATTTTGAAGG 59.622 38.462 11.67 0.00 43.77 3.46
118 119 6.212888 ACTATGGTCATTCATTTTGAAGGC 57.787 37.500 0.00 0.00 40.05 4.35
119 120 5.954150 ACTATGGTCATTCATTTTGAAGGCT 59.046 36.000 0.00 0.00 40.05 4.58
120 121 4.524316 TGGTCATTCATTTTGAAGGCTG 57.476 40.909 0.00 0.00 40.05 4.85
127 128 5.850557 TTCATTTTGAAGGCTGAAACTGA 57.149 34.783 7.71 7.71 31.83 3.41
135 136 1.707427 AGGCTGAAACTGAAGGGTGAT 59.293 47.619 0.00 0.00 0.00 3.06
142 143 5.005740 TGAAACTGAAGGGTGATCATTCTG 58.994 41.667 0.00 5.83 0.00 3.02
154 155 0.975556 TCATTCTGTAGGCCGCTGGA 60.976 55.000 0.00 0.00 0.00 3.86
176 177 1.451927 GCCGGCCATCATGAACTGA 60.452 57.895 18.11 0.00 38.53 3.41
184 185 3.329386 CCATCATGAACTGACGTGAACT 58.671 45.455 0.00 0.00 38.90 3.01
185 186 3.124128 CCATCATGAACTGACGTGAACTG 59.876 47.826 0.00 0.00 38.90 3.16
232 236 6.515035 GCCGTTGCCATTTTAGCTATATCTTT 60.515 38.462 0.00 0.00 0.00 2.52
258 262 5.440234 TGCTTTCAAAAATTTGCATGCAT 57.560 30.435 23.37 4.18 38.67 3.96
260 264 9.588938 GTTGCTTTCAAAAATTTGCATGCATGC 62.589 37.037 38.71 38.71 41.32 4.06
270 274 0.886043 GCATGCATGCGGACCAGATA 60.886 55.000 33.99 0.00 44.67 1.98
271 275 1.817357 CATGCATGCGGACCAGATAT 58.183 50.000 14.93 0.00 0.00 1.63
275 279 0.957395 CATGCGGACCAGATATGGCC 60.957 60.000 6.21 7.99 0.00 5.36
279 283 2.021723 GCGGACCAGATATGGCCAAAA 61.022 52.381 10.96 0.12 0.00 2.44
284 288 3.377573 ACCAGATATGGCCAAAAATGCT 58.622 40.909 10.96 0.00 0.00 3.79
286 290 3.133362 CCAGATATGGCCAAAAATGCTGT 59.867 43.478 10.96 0.00 0.00 4.40
288 292 2.937469 TATGGCCAAAAATGCTGTCG 57.063 45.000 10.96 0.00 0.00 4.35
289 293 0.390209 ATGGCCAAAAATGCTGTCGC 60.390 50.000 10.96 0.00 0.00 5.19
306 310 3.353029 CACGTTGGGCGCACATCA 61.353 61.111 15.98 0.00 46.11 3.07
308 312 3.803082 CGTTGGGCGCACATCAGG 61.803 66.667 15.98 0.06 0.00 3.86
309 313 4.120331 GTTGGGCGCACATCAGGC 62.120 66.667 15.98 0.00 0.00 4.85
324 328 3.143807 TCAGGCGCATTTAAAAATCCG 57.856 42.857 10.83 0.00 32.91 4.18
331 335 2.804647 CATTTAAAAATCCGGACGGCC 58.195 47.619 6.12 0.00 34.68 6.13
349 353 3.064324 GCCGCTTCATTGCCACCT 61.064 61.111 0.00 0.00 0.00 4.00
351 355 2.753966 CCGCTTCATTGCCACCTCG 61.754 63.158 0.00 0.00 0.00 4.63
355 359 1.269448 GCTTCATTGCCACCTCGAAAA 59.731 47.619 0.00 0.00 0.00 2.29
370 374 2.991190 TCGAAAAGGACGAAATTCGGAG 59.009 45.455 19.95 2.08 45.59 4.63
385 389 3.380479 TCGGAGAAAACGAATGTCTGT 57.620 42.857 0.00 0.00 37.42 3.41
386 390 3.724374 TCGGAGAAAACGAATGTCTGTT 58.276 40.909 0.00 0.00 37.42 3.16
387 391 4.124238 TCGGAGAAAACGAATGTCTGTTT 58.876 39.130 0.00 0.00 39.84 2.83
388 392 4.025229 TCGGAGAAAACGAATGTCTGTTTG 60.025 41.667 0.00 0.00 38.26 2.93
389 393 4.537015 GGAGAAAACGAATGTCTGTTTGG 58.463 43.478 0.00 0.00 38.26 3.28
391 395 4.204012 AGAAAACGAATGTCTGTTTGGGA 58.796 39.130 0.00 0.00 38.26 4.37
392 396 4.827284 AGAAAACGAATGTCTGTTTGGGAT 59.173 37.500 0.00 0.00 38.26 3.85
397 401 2.859165 ATGTCTGTTTGGGATCGTGT 57.141 45.000 0.00 0.00 0.00 4.49
398 402 2.631160 TGTCTGTTTGGGATCGTGTT 57.369 45.000 0.00 0.00 0.00 3.32
399 403 2.489971 TGTCTGTTTGGGATCGTGTTC 58.510 47.619 0.00 0.00 0.00 3.18
462 467 7.103641 TCAACTCACTTATAGGCGAATCTTTT 58.896 34.615 0.00 0.00 0.00 2.27
464 469 8.879759 CAACTCACTTATAGGCGAATCTTTTAA 58.120 33.333 0.00 0.00 0.00 1.52
531 536 0.255604 CACTGGGCATGGTATGGACA 59.744 55.000 0.00 0.00 0.00 4.02
571 580 1.212751 GCACCGGCCAAACTCAATC 59.787 57.895 0.00 0.00 0.00 2.67
577 586 1.000717 CGGCCAAACTCAATCGGTTTT 60.001 47.619 2.24 0.00 35.09 2.43
580 589 3.306019 GGCCAAACTCAATCGGTTTTCAT 60.306 43.478 0.00 0.00 35.09 2.57
581 590 4.082463 GGCCAAACTCAATCGGTTTTCATA 60.082 41.667 0.00 0.00 35.09 2.15
582 591 5.465935 GCCAAACTCAATCGGTTTTCATAA 58.534 37.500 0.00 0.00 35.09 1.90
583 592 5.923684 GCCAAACTCAATCGGTTTTCATAAA 59.076 36.000 0.00 0.00 35.09 1.40
584 593 6.089417 GCCAAACTCAATCGGTTTTCATAAAG 59.911 38.462 0.00 0.00 35.09 1.85
585 594 6.586082 CCAAACTCAATCGGTTTTCATAAAGG 59.414 38.462 0.00 0.00 35.09 3.11
586 595 7.367285 CAAACTCAATCGGTTTTCATAAAGGA 58.633 34.615 0.00 0.00 35.09 3.36
587 596 6.496338 ACTCAATCGGTTTTCATAAAGGAC 57.504 37.500 0.00 0.00 0.00 3.85
588 597 6.238648 ACTCAATCGGTTTTCATAAAGGACT 58.761 36.000 0.00 0.00 0.00 3.85
589 598 7.391620 ACTCAATCGGTTTTCATAAAGGACTA 58.608 34.615 0.00 0.00 0.00 2.59
590 599 8.047310 ACTCAATCGGTTTTCATAAAGGACTAT 58.953 33.333 0.00 0.00 0.00 2.12
591 600 8.801882 TCAATCGGTTTTCATAAAGGACTATT 57.198 30.769 0.00 0.00 0.00 1.73
619 628 1.869767 CTACGGTACACTACTAGGGCG 59.130 57.143 0.00 0.00 0.00 6.13
620 629 0.749454 ACGGTACACTACTAGGGCGG 60.749 60.000 0.00 0.00 0.00 6.13
621 630 0.464373 CGGTACACTACTAGGGCGGA 60.464 60.000 0.00 0.00 0.00 5.54
622 631 1.028130 GGTACACTACTAGGGCGGAC 58.972 60.000 0.00 0.00 0.00 4.79
623 632 0.659957 GTACACTACTAGGGCGGACG 59.340 60.000 0.00 0.00 0.00 4.79
624 633 1.097547 TACACTACTAGGGCGGACGC 61.098 60.000 8.39 8.39 41.06 5.19
625 634 2.119655 CACTACTAGGGCGGACGCT 61.120 63.158 16.72 0.00 42.59 5.07
626 635 2.119655 ACTACTAGGGCGGACGCTG 61.120 63.158 16.72 7.22 39.80 5.18
627 636 3.486252 CTACTAGGGCGGACGCTGC 62.486 68.421 16.72 0.00 39.80 5.25
629 638 4.148825 CTAGGGCGGACGCTGCTT 62.149 66.667 16.72 0.00 39.80 3.91
630 639 4.451150 TAGGGCGGACGCTGCTTG 62.451 66.667 16.72 0.00 39.80 4.01
640 649 2.671619 GCTGCTTGGGTGCCGTAA 60.672 61.111 0.00 0.00 0.00 3.18
641 650 2.978018 GCTGCTTGGGTGCCGTAAC 61.978 63.158 0.00 0.00 0.00 2.50
642 651 1.302511 CTGCTTGGGTGCCGTAACT 60.303 57.895 0.00 0.00 0.00 2.24
643 652 1.577328 CTGCTTGGGTGCCGTAACTG 61.577 60.000 0.00 0.00 0.00 3.16
644 653 2.978018 GCTTGGGTGCCGTAACTGC 61.978 63.158 0.00 0.00 0.00 4.40
645 654 1.599518 CTTGGGTGCCGTAACTGCA 60.600 57.895 0.00 0.00 36.12 4.41
651 660 2.051105 TGCCGTAACTGCACCTACA 58.949 52.632 0.00 0.00 32.85 2.74
652 661 0.037697 TGCCGTAACTGCACCTACAG 60.038 55.000 0.00 0.00 43.59 2.74
660 669 2.768253 CTGCACCTACAGTTGGATCA 57.232 50.000 8.17 4.29 32.78 2.92
661 670 3.057969 CTGCACCTACAGTTGGATCAA 57.942 47.619 8.17 0.00 32.78 2.57
662 671 3.614092 CTGCACCTACAGTTGGATCAAT 58.386 45.455 8.17 0.00 32.78 2.57
663 672 3.346315 TGCACCTACAGTTGGATCAATG 58.654 45.455 8.17 0.00 0.00 2.82
664 673 2.684881 GCACCTACAGTTGGATCAATGG 59.315 50.000 8.17 0.00 0.00 3.16
665 674 2.684881 CACCTACAGTTGGATCAATGGC 59.315 50.000 8.17 0.00 0.00 4.40
666 675 2.308570 ACCTACAGTTGGATCAATGGCA 59.691 45.455 8.17 0.00 0.00 4.92
667 676 3.053395 ACCTACAGTTGGATCAATGGCAT 60.053 43.478 8.17 0.00 0.00 4.40
668 677 3.317149 CCTACAGTTGGATCAATGGCATG 59.683 47.826 0.00 0.00 0.00 4.06
669 678 2.811410 ACAGTTGGATCAATGGCATGT 58.189 42.857 0.00 0.00 0.00 3.21
670 679 2.494471 ACAGTTGGATCAATGGCATGTG 59.506 45.455 0.00 1.95 0.00 3.21
671 680 2.104967 AGTTGGATCAATGGCATGTGG 58.895 47.619 0.00 0.00 0.00 4.17
672 681 1.137479 GTTGGATCAATGGCATGTGGG 59.863 52.381 0.00 0.00 0.00 4.61
673 682 1.044231 TGGATCAATGGCATGTGGGC 61.044 55.000 0.00 0.00 43.73 5.36
682 691 4.415150 CATGTGGGCCAGCCGTCT 62.415 66.667 6.40 0.00 36.85 4.18
683 692 4.415150 ATGTGGGCCAGCCGTCTG 62.415 66.667 6.40 0.00 40.02 3.51
685 694 4.643387 GTGGGCCAGCCGTCTGTT 62.643 66.667 6.40 0.00 38.66 3.16
686 695 2.925706 TGGGCCAGCCGTCTGTTA 60.926 61.111 0.00 0.00 38.66 2.41
687 696 2.125106 GGGCCAGCCGTCTGTTAG 60.125 66.667 4.39 0.00 38.66 2.34
688 697 2.125106 GGCCAGCCGTCTGTTAGG 60.125 66.667 0.00 0.00 38.66 2.69
694 703 3.065306 CCGTCTGTTAGGCCCACA 58.935 61.111 0.00 1.28 0.00 4.17
695 704 1.602237 CCGTCTGTTAGGCCCACAT 59.398 57.895 0.00 0.00 0.00 3.21
696 705 0.744414 CCGTCTGTTAGGCCCACATG 60.744 60.000 0.00 0.00 0.00 3.21
697 706 0.036388 CGTCTGTTAGGCCCACATGT 60.036 55.000 0.00 0.00 0.00 3.21
698 707 1.739067 GTCTGTTAGGCCCACATGTC 58.261 55.000 0.00 0.00 0.00 3.06
699 708 1.003118 GTCTGTTAGGCCCACATGTCA 59.997 52.381 0.00 0.00 0.00 3.58
700 709 1.915489 TCTGTTAGGCCCACATGTCAT 59.085 47.619 0.00 0.00 0.00 3.06
701 710 2.308570 TCTGTTAGGCCCACATGTCATT 59.691 45.455 0.00 0.00 0.00 2.57
702 711 2.424601 CTGTTAGGCCCACATGTCATTG 59.575 50.000 0.00 0.00 0.00 2.82
703 712 1.750778 GTTAGGCCCACATGTCATTGG 59.249 52.381 0.00 0.00 0.00 3.16
704 713 0.395586 TAGGCCCACATGTCATTGGC 60.396 55.000 14.02 14.02 41.42 4.52
705 714 2.894919 GCCCACATGTCATTGGCC 59.105 61.111 12.14 0.00 36.07 5.36
706 715 2.724273 GCCCACATGTCATTGGCCC 61.724 63.158 0.00 0.00 36.07 5.80
707 716 1.305129 CCCACATGTCATTGGCCCA 60.305 57.895 0.00 0.00 0.00 5.36
708 717 0.903924 CCCACATGTCATTGGCCCAA 60.904 55.000 0.00 0.00 0.00 4.12
709 718 0.247185 CCACATGTCATTGGCCCAAC 59.753 55.000 0.00 0.00 0.00 3.77
710 719 1.259609 CACATGTCATTGGCCCAACT 58.740 50.000 0.00 0.00 0.00 3.16
711 720 1.067425 CACATGTCATTGGCCCAACTG 60.067 52.381 0.00 0.00 0.00 3.16
712 721 0.108520 CATGTCATTGGCCCAACTGC 60.109 55.000 0.00 0.00 0.00 4.40
713 722 0.542467 ATGTCATTGGCCCAACTGCA 60.542 50.000 0.00 0.00 0.00 4.41
714 723 1.180456 TGTCATTGGCCCAACTGCAG 61.180 55.000 13.48 13.48 0.00 4.41
715 724 1.607178 TCATTGGCCCAACTGCAGG 60.607 57.895 19.93 1.24 0.00 4.85
716 725 1.909781 CATTGGCCCAACTGCAGGT 60.910 57.895 19.93 9.19 0.00 4.00
717 726 0.611618 CATTGGCCCAACTGCAGGTA 60.612 55.000 19.93 0.00 0.00 3.08
718 727 0.611896 ATTGGCCCAACTGCAGGTAC 60.612 55.000 19.93 4.23 0.00 3.34
719 728 2.000825 TTGGCCCAACTGCAGGTACA 62.001 55.000 19.93 6.09 0.00 2.90
720 729 1.675641 GGCCCAACTGCAGGTACAG 60.676 63.158 19.93 4.48 43.59 2.74
727 736 2.750815 CTGCAGGTACAGTTACGGC 58.249 57.895 5.57 0.00 32.78 5.68
728 737 0.037697 CTGCAGGTACAGTTACGGCA 60.038 55.000 5.57 2.89 37.04 5.69
729 738 0.320073 TGCAGGTACAGTTACGGCAC 60.320 55.000 0.00 0.00 35.46 5.01
730 739 0.037605 GCAGGTACAGTTACGGCACT 60.038 55.000 0.00 0.00 32.32 4.40
732 741 1.271379 CAGGTACAGTTACGGCACTGA 59.729 52.381 19.81 4.42 46.29 3.41
733 742 1.965643 AGGTACAGTTACGGCACTGAA 59.034 47.619 19.81 0.00 46.29 3.02
734 743 2.029290 AGGTACAGTTACGGCACTGAAG 60.029 50.000 19.81 0.00 46.29 3.02
735 744 2.288640 GGTACAGTTACGGCACTGAAGT 60.289 50.000 19.81 3.84 46.29 3.01
736 745 2.614829 ACAGTTACGGCACTGAAGTT 57.385 45.000 19.81 0.00 46.29 2.66
737 746 2.480845 ACAGTTACGGCACTGAAGTTC 58.519 47.619 19.81 0.00 46.29 3.01
738 747 2.159014 ACAGTTACGGCACTGAAGTTCA 60.159 45.455 19.81 5.25 46.29 3.18
749 758 3.601443 CTGAAGTTCAGTCCTACCAGG 57.399 52.381 22.48 0.00 39.58 4.45
750 759 2.234908 CTGAAGTTCAGTCCTACCAGGG 59.765 54.545 22.48 0.00 39.58 4.45
751 760 0.984995 AAGTTCAGTCCTACCAGGGC 59.015 55.000 0.00 0.00 41.32 5.19
816 825 3.149196 ACCGGCAGGCAATTATAATCTG 58.851 45.455 0.00 3.63 42.76 2.90
1349 1361 1.953138 CAGCCCAGATCGATGCGTC 60.953 63.158 0.54 0.00 0.00 5.19
1377 1399 2.017049 CCACATTTGGTGCTACCTAGC 58.983 52.381 6.83 0.00 46.50 3.42
1395 1417 3.479255 CAGCGCTGCTATCATACGA 57.521 52.632 26.68 0.00 36.40 3.43
1402 1424 3.304257 GCTGCTATCATACGACTGTCTG 58.696 50.000 6.21 2.43 0.00 3.51
1528 1550 1.003851 CCGTACAATGGCTGGTAACG 58.996 55.000 0.00 0.00 42.51 3.18
1539 1587 4.328536 TGGCTGGTAACGATTTTGTACAT 58.671 39.130 0.00 0.00 42.51 2.29
1540 1588 5.489249 TGGCTGGTAACGATTTTGTACATA 58.511 37.500 0.00 0.00 42.51 2.29
1541 1589 5.352016 TGGCTGGTAACGATTTTGTACATAC 59.648 40.000 0.00 0.00 42.51 2.39
1596 1645 2.381911 ACTTGCAGGGCCAGATTATTG 58.618 47.619 6.18 0.00 0.00 1.90
1625 1674 3.239254 CGTCGCAAATGTGTAGTCAGTA 58.761 45.455 0.00 0.00 0.00 2.74
1626 1675 3.300853 CGTCGCAAATGTGTAGTCAGTAG 59.699 47.826 0.00 0.00 0.00 2.57
1630 1679 4.798907 CGCAAATGTGTAGTCAGTAGTAGG 59.201 45.833 0.00 0.00 0.00 3.18
1644 1693 5.591877 TCAGTAGTAGGACTATCGGTTTTCC 59.408 44.000 0.00 0.00 32.65 3.13
1792 1854 8.709646 CGAAGTAGCAATTTCACTTTTACTACT 58.290 33.333 0.00 0.00 40.46 2.57
1989 2051 0.317479 ACGGTCTTCAAGGTCCTTCG 59.683 55.000 0.00 3.85 0.00 3.79
2022 2084 4.402793 CACCAATGCTGGAGTACTAGTAGT 59.597 45.833 10.09 10.09 46.92 2.73
2023 2085 5.593095 CACCAATGCTGGAGTACTAGTAGTA 59.407 44.000 10.28 5.90 46.92 1.82
2024 2086 5.828859 ACCAATGCTGGAGTACTAGTAGTAG 59.171 44.000 10.38 6.68 46.92 2.57
2025 2087 5.828859 CCAATGCTGGAGTACTAGTAGTAGT 59.171 44.000 16.10 16.10 46.92 2.73
2026 2088 6.996879 CCAATGCTGGAGTACTAGTAGTAGTA 59.003 42.308 16.13 12.58 46.92 1.82
2114 2300 5.815233 ATATGGAGTGGTACCAATCTGAG 57.185 43.478 34.16 0.00 40.41 3.35
2251 2621 1.135721 CACCCGGTTAGTACCACTAGC 59.864 57.143 0.00 0.00 45.31 3.42
2261 2631 2.023307 AGTACCACTAGCCCACTACCAT 60.023 50.000 0.00 0.00 0.00 3.55
2269 2639 5.123502 CACTAGCCCACTACCATATACTACG 59.876 48.000 0.00 0.00 0.00 3.51
2343 2714 3.073798 TCCCAAAGGACTTTGCTCACATA 59.926 43.478 17.14 0.00 46.25 2.29
2348 2721 4.773323 AGGACTTTGCTCACATAAAAGC 57.227 40.909 0.00 0.00 39.02 3.51
2367 2740 4.926140 AGCAAAAAGGAAGAAACTCAGG 57.074 40.909 0.00 0.00 0.00 3.86
2424 3020 0.042731 CCTCCACCTTACTCCCTCCA 59.957 60.000 0.00 0.00 0.00 3.86
2438 3034 6.848562 ACTCCCTCCATTCCAAAATATAGT 57.151 37.500 0.00 0.00 0.00 2.12
2439 3035 7.947782 ACTCCCTCCATTCCAAAATATAGTA 57.052 36.000 0.00 0.00 0.00 1.82
2445 3041 4.153475 CCATTCCAAAATATAGTACGCCCG 59.847 45.833 0.00 0.00 0.00 6.13
2451 3047 0.109412 ATATAGTACGCCCGCGCTTC 60.109 55.000 9.37 0.00 44.19 3.86
2459 3055 2.354072 CCCGCGCTTCTCGAGATC 60.354 66.667 17.44 10.36 40.54 2.75
2492 3088 7.608376 TGACCATAAATTTAATCAACGAGACCA 59.392 33.333 1.21 0.00 0.00 4.02
2503 3099 4.373116 GAGACCAACTGCGGCGGA 62.373 66.667 17.15 4.40 0.00 5.54
2505 3101 3.423154 GACCAACTGCGGCGGAAG 61.423 66.667 17.15 7.03 0.00 3.46
2506 3102 3.876589 GACCAACTGCGGCGGAAGA 62.877 63.158 17.15 0.00 0.00 2.87
2567 3163 9.191995 GAATTCACTAATATAATTTTTGCCCCG 57.808 33.333 0.00 0.00 0.00 5.73
2568 3164 6.079424 TCACTAATATAATTTTTGCCCCGC 57.921 37.500 0.00 0.00 0.00 6.13
2570 3166 3.378911 AATATAATTTTTGCCCCGCCG 57.621 42.857 0.00 0.00 0.00 6.46
2571 3167 0.386113 TATAATTTTTGCCCCGCCGC 59.614 50.000 0.00 0.00 0.00 6.53
2572 3168 1.608717 ATAATTTTTGCCCCGCCGCA 61.609 50.000 0.00 0.00 36.85 5.69
2583 3180 2.331893 CCGCCGCAATTGGTCTTGA 61.332 57.895 7.72 0.00 0.00 3.02
2585 3182 1.013596 CGCCGCAATTGGTCTTGATA 58.986 50.000 7.72 0.00 0.00 2.15
2586 3183 1.003545 CGCCGCAATTGGTCTTGATAG 60.004 52.381 7.72 0.00 0.00 2.08
2594 3191 7.759433 CCGCAATTGGTCTTGATAGTTAAATTT 59.241 33.333 7.72 0.00 0.00 1.82
2615 3212 0.934496 CGGTCAAAGTTGAAGCACGA 59.066 50.000 0.00 0.00 39.21 4.35
2617 3214 2.599848 CGGTCAAAGTTGAAGCACGAAG 60.600 50.000 0.00 0.00 39.21 3.79
2619 3216 3.251004 GGTCAAAGTTGAAGCACGAAGAT 59.749 43.478 0.00 0.00 39.21 2.40
2620 3217 4.451096 GGTCAAAGTTGAAGCACGAAGATA 59.549 41.667 0.00 0.00 39.21 1.98
2626 3223 4.220821 AGTTGAAGCACGAAGATAGAGGAA 59.779 41.667 0.00 0.00 0.00 3.36
2629 3226 2.103373 AGCACGAAGATAGAGGAAGCA 58.897 47.619 0.00 0.00 0.00 3.91
2633 3230 4.602995 CACGAAGATAGAGGAAGCACTAC 58.397 47.826 0.00 0.00 0.00 2.73
2637 3234 5.689514 CGAAGATAGAGGAAGCACTACATTG 59.310 44.000 0.00 0.00 0.00 2.82
2640 3237 5.658634 AGATAGAGGAAGCACTACATTGTGA 59.341 40.000 0.00 0.00 40.12 3.58
2643 3240 5.564550 AGAGGAAGCACTACATTGTGAAAT 58.435 37.500 0.00 0.00 40.12 2.17
2661 3258 9.627123 TTGTGAAATGGAGGGAGTATTTTATAG 57.373 33.333 0.00 0.00 0.00 1.31
2671 3271 5.690857 GGGAGTATTTTATAGTGACACTCGC 59.309 44.000 12.39 0.00 37.34 5.03
2791 3391 4.676723 GCAGTGGTACTAGAAAGAGAGCAG 60.677 50.000 0.00 0.00 0.00 4.24
2816 3416 1.035139 CACCTGCCTGCTTTTTCAGT 58.965 50.000 0.00 0.00 32.32 3.41
3032 3655 5.873179 AGAGAGAGAAAAGAGAGTACACG 57.127 43.478 0.00 0.00 0.00 4.49
3246 3893 5.814705 TGTTTGTGGCAACCAAAATTCTAAG 59.185 36.000 5.01 0.00 38.10 2.18
3248 3895 5.195001 TGTGGCAACCAAAATTCTAAGTC 57.805 39.130 0.00 0.00 34.18 3.01
3249 3896 4.646945 TGTGGCAACCAAAATTCTAAGTCA 59.353 37.500 0.00 0.00 34.18 3.41
3272 3921 9.423061 GTCAATAGATACTTGCAACCAAAATTT 57.577 29.630 0.00 0.00 0.00 1.82
3971 4632 1.550524 CTGGTACCTGTGCTCAAGCTA 59.449 52.381 14.36 0.00 42.66 3.32
4206 4899 6.187682 AGGTACTTGCCTGCTGTATTAATTT 58.812 36.000 0.00 0.00 37.50 1.82
4270 5064 5.187967 AGGACTACCCTAGTTTCTGAACATG 59.812 44.000 0.00 0.00 45.48 3.21
4281 5082 9.291664 CTAGTTTCTGAACATGTTAGCTACTAC 57.708 37.037 11.95 4.60 38.26 2.73
4287 5088 9.676861 TCTGAACATGTTAGCTACTACTTAGTA 57.323 33.333 11.95 0.00 37.73 1.82
4379 5206 2.773487 ACGTTTTGCACTGCTATGGTA 58.227 42.857 1.98 0.00 0.00 3.25
4473 5547 3.991051 CGTGGTGGCCTGACGACT 61.991 66.667 14.30 0.00 35.05 4.18
4586 5660 6.251471 ACCACCTAGTAGAAGCAGTAAGTTA 58.749 40.000 0.00 0.00 0.00 2.24
4602 5680 7.432838 GCAGTAAGTTACAATACTACTCTGCTC 59.567 40.741 15.28 0.00 39.80 4.26
4651 5729 7.255208 CCATATATTGTACTTGTGCATGCTGAA 60.255 37.037 20.33 10.31 0.00 3.02
4652 5730 4.852134 ATTGTACTTGTGCATGCTGAAA 57.148 36.364 20.33 9.45 0.00 2.69
4653 5731 4.645762 TTGTACTTGTGCATGCTGAAAA 57.354 36.364 20.33 6.97 0.00 2.29
4654 5732 4.645762 TGTACTTGTGCATGCTGAAAAA 57.354 36.364 20.33 0.00 0.00 1.94
4912 5991 3.260380 AGTGATGAGAGACTGGAAACTGG 59.740 47.826 0.00 0.00 0.00 4.00
5128 6207 6.785488 TGTAACTAGCAGATGTTGTTTCAG 57.215 37.500 0.00 0.00 0.00 3.02
5240 6319 6.251376 CCTTTTTCTGAACTTTGTGTTTCTCG 59.749 38.462 0.00 0.00 39.30 4.04
5282 6361 6.287589 TCTGTCTAAAGTTTCTCCTGATCC 57.712 41.667 0.00 0.00 0.00 3.36
5339 6422 5.871396 ACAGAGGTTATATCGGACAACAT 57.129 39.130 2.60 0.00 0.00 2.71
5344 6427 7.595502 CAGAGGTTATATCGGACAACATAGTTC 59.404 40.741 2.60 0.00 0.00 3.01
5434 6518 3.320823 TCACACGTGTGGCATTGAT 57.679 47.368 39.88 6.26 45.65 2.57
5449 6533 5.002464 GCATTGATGGCAAGTTTAGTCAT 57.998 39.130 0.00 0.00 37.45 3.06
5450 6534 6.135290 GCATTGATGGCAAGTTTAGTCATA 57.865 37.500 0.00 0.00 37.45 2.15
5451 6535 5.973565 GCATTGATGGCAAGTTTAGTCATAC 59.026 40.000 0.00 0.00 37.45 2.39
5452 6536 6.404623 GCATTGATGGCAAGTTTAGTCATACA 60.405 38.462 0.00 0.00 37.45 2.29
5453 6537 7.537715 CATTGATGGCAAGTTTAGTCATACAA 58.462 34.615 0.00 0.00 37.45 2.41
5457 6541 7.392953 TGATGGCAAGTTTAGTCATACAATGAA 59.607 33.333 0.00 0.00 41.69 2.57
5483 6567 5.982890 AACTTTAGTTGTAAGCATGGCAT 57.017 34.783 0.00 0.00 36.80 4.40
5589 6674 1.063649 GCCGAAGTGCATCATGCTG 59.936 57.895 11.84 0.00 45.31 4.41
5590 6675 1.651240 GCCGAAGTGCATCATGCTGT 61.651 55.000 11.84 0.00 45.31 4.40
5592 6677 2.216046 CCGAAGTGCATCATGCTGTAT 58.784 47.619 11.84 0.00 45.31 2.29
5593 6678 2.032290 CCGAAGTGCATCATGCTGTATG 60.032 50.000 11.84 0.00 45.31 2.39
5656 6987 9.458374 TTTTTACTACAGCAAAGAAATAAGCAC 57.542 29.630 0.00 0.00 0.00 4.40
5658 6989 6.487689 ACTACAGCAAAGAAATAAGCACTC 57.512 37.500 0.00 0.00 0.00 3.51
5686 7026 9.284968 TGCTTAAGATTCTTTTTACTAAGCACT 57.715 29.630 20.31 0.00 41.29 4.40
5714 7054 3.450115 GGCCGGACGCTACTGTCT 61.450 66.667 5.05 0.00 38.91 3.41
5727 7067 3.927142 GCTACTGTCTGACCATGTACAAC 59.073 47.826 0.00 0.00 0.00 3.32
5735 7075 4.948004 TCTGACCATGTACAACGTAGAGAT 59.052 41.667 0.00 0.00 0.00 2.75
5736 7076 5.066117 TCTGACCATGTACAACGTAGAGATC 59.934 44.000 0.00 0.00 0.00 2.75
5737 7077 4.948004 TGACCATGTACAACGTAGAGATCT 59.052 41.667 0.00 0.00 0.00 2.75
5738 7078 5.417894 TGACCATGTACAACGTAGAGATCTT 59.582 40.000 0.00 0.00 0.00 2.40
5739 7079 5.651530 ACCATGTACAACGTAGAGATCTTG 58.348 41.667 0.00 0.00 0.00 3.02
5740 7080 5.043903 CCATGTACAACGTAGAGATCTTGG 58.956 45.833 0.00 0.00 0.00 3.61
5741 7081 4.713824 TGTACAACGTAGAGATCTTGGG 57.286 45.455 0.00 0.00 0.00 4.12
5742 7082 3.446161 TGTACAACGTAGAGATCTTGGGG 59.554 47.826 0.00 0.00 0.00 4.96
5743 7083 2.816411 ACAACGTAGAGATCTTGGGGA 58.184 47.619 0.00 0.00 0.00 4.81
5744 7084 3.375699 ACAACGTAGAGATCTTGGGGAT 58.624 45.455 0.00 0.00 37.37 3.85
5745 7085 3.133003 ACAACGTAGAGATCTTGGGGATG 59.867 47.826 0.00 0.00 34.33 3.51
5746 7086 3.033659 ACGTAGAGATCTTGGGGATGT 57.966 47.619 0.00 0.00 34.33 3.06
5747 7087 3.375699 ACGTAGAGATCTTGGGGATGTT 58.624 45.455 0.00 0.00 34.33 2.71
5748 7088 3.775316 ACGTAGAGATCTTGGGGATGTTT 59.225 43.478 0.00 0.00 34.33 2.83
5749 7089 4.225267 ACGTAGAGATCTTGGGGATGTTTT 59.775 41.667 0.00 0.00 34.33 2.43
5831 7184 3.917760 CCGGAGATGAGCGGGGAC 61.918 72.222 0.00 0.00 0.00 4.46
5888 7242 6.160576 TCTAATGGCAAGTTTCAGCTTTTT 57.839 33.333 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 0.321671 CCTCTCCGGTGTCATGTTGT 59.678 55.000 0.00 0.00 0.00 3.32
3 4 0.608130 TCCTCTCCGGTGTCATGTTG 59.392 55.000 0.00 0.00 0.00 3.33
4 5 1.276421 CTTCCTCTCCGGTGTCATGTT 59.724 52.381 0.00 0.00 0.00 2.71
5 6 0.898320 CTTCCTCTCCGGTGTCATGT 59.102 55.000 0.00 0.00 0.00 3.21
6 7 0.460987 GCTTCCTCTCCGGTGTCATG 60.461 60.000 0.00 0.00 0.00 3.07
7 8 0.616111 AGCTTCCTCTCCGGTGTCAT 60.616 55.000 0.00 0.00 0.00 3.06
8 9 0.832135 AAGCTTCCTCTCCGGTGTCA 60.832 55.000 0.00 0.00 0.00 3.58
9 10 0.390472 CAAGCTTCCTCTCCGGTGTC 60.390 60.000 0.00 0.00 0.00 3.67
10 11 1.674057 CAAGCTTCCTCTCCGGTGT 59.326 57.895 0.00 0.00 0.00 4.16
11 12 1.078848 CCAAGCTTCCTCTCCGGTG 60.079 63.158 0.00 0.00 0.00 4.94
12 13 1.128188 AACCAAGCTTCCTCTCCGGT 61.128 55.000 0.00 0.00 0.00 5.28
13 14 0.391793 GAACCAAGCTTCCTCTCCGG 60.392 60.000 0.00 0.00 0.00 5.14
14 15 0.737715 CGAACCAAGCTTCCTCTCCG 60.738 60.000 0.00 0.00 0.00 4.63
15 16 0.321996 ACGAACCAAGCTTCCTCTCC 59.678 55.000 0.00 0.00 0.00 3.71
16 17 1.000955 TCACGAACCAAGCTTCCTCTC 59.999 52.381 0.00 0.00 0.00 3.20
17 18 1.048601 TCACGAACCAAGCTTCCTCT 58.951 50.000 0.00 0.00 0.00 3.69
18 19 1.531578 GTTCACGAACCAAGCTTCCTC 59.468 52.381 0.00 0.00 35.36 3.71
19 20 1.594331 GTTCACGAACCAAGCTTCCT 58.406 50.000 0.00 0.00 35.36 3.36
33 34 0.460987 CATCTCCTCTGGCGGTTCAC 60.461 60.000 0.00 0.00 0.00 3.18
34 35 0.904865 ACATCTCCTCTGGCGGTTCA 60.905 55.000 0.00 0.00 0.00 3.18
35 36 0.250513 AACATCTCCTCTGGCGGTTC 59.749 55.000 0.00 0.00 0.00 3.62
36 37 0.250513 GAACATCTCCTCTGGCGGTT 59.749 55.000 0.00 0.00 0.00 4.44
37 38 1.901085 GAACATCTCCTCTGGCGGT 59.099 57.895 0.00 0.00 0.00 5.68
38 39 1.227089 CGAACATCTCCTCTGGCGG 60.227 63.158 0.00 0.00 0.00 6.13
39 40 0.526524 GACGAACATCTCCTCTGGCG 60.527 60.000 0.00 0.00 0.00 5.69
40 41 0.526524 CGACGAACATCTCCTCTGGC 60.527 60.000 0.00 0.00 0.00 4.85
41 42 0.101399 CCGACGAACATCTCCTCTGG 59.899 60.000 0.00 0.00 0.00 3.86
42 43 1.064803 CTCCGACGAACATCTCCTCTG 59.935 57.143 0.00 0.00 0.00 3.35
43 44 1.065345 TCTCCGACGAACATCTCCTCT 60.065 52.381 0.00 0.00 0.00 3.69
44 45 1.380524 TCTCCGACGAACATCTCCTC 58.619 55.000 0.00 0.00 0.00 3.71
45 46 1.678627 CATCTCCGACGAACATCTCCT 59.321 52.381 0.00 0.00 0.00 3.69
46 47 1.269309 CCATCTCCGACGAACATCTCC 60.269 57.143 0.00 0.00 0.00 3.71
47 48 1.866063 GCCATCTCCGACGAACATCTC 60.866 57.143 0.00 0.00 0.00 2.75
48 49 0.103208 GCCATCTCCGACGAACATCT 59.897 55.000 0.00 0.00 0.00 2.90
49 50 0.876342 GGCCATCTCCGACGAACATC 60.876 60.000 0.00 0.00 0.00 3.06
50 51 1.144057 GGCCATCTCCGACGAACAT 59.856 57.895 0.00 0.00 0.00 2.71
51 52 1.982395 AGGCCATCTCCGACGAACA 60.982 57.895 5.01 0.00 0.00 3.18
52 53 1.519455 CAGGCCATCTCCGACGAAC 60.519 63.158 5.01 0.00 0.00 3.95
53 54 1.254975 TTCAGGCCATCTCCGACGAA 61.255 55.000 5.01 0.00 0.00 3.85
54 55 1.680989 TTCAGGCCATCTCCGACGA 60.681 57.895 5.01 0.00 0.00 4.20
55 56 1.519455 GTTCAGGCCATCTCCGACG 60.519 63.158 5.01 0.00 0.00 5.12
56 57 1.067821 CTAGTTCAGGCCATCTCCGAC 59.932 57.143 5.01 0.00 0.00 4.79
57 58 1.403814 CTAGTTCAGGCCATCTCCGA 58.596 55.000 5.01 0.00 0.00 4.55
58 59 0.390860 CCTAGTTCAGGCCATCTCCG 59.609 60.000 5.01 0.00 37.70 4.63
76 77 1.218316 CCACGGCTAAGGTCTCACC 59.782 63.158 0.00 0.00 38.99 4.02
77 78 0.108756 GTCCACGGCTAAGGTCTCAC 60.109 60.000 0.00 0.00 0.00 3.51
78 79 0.251653 AGTCCACGGCTAAGGTCTCA 60.252 55.000 0.00 0.00 0.00 3.27
79 80 1.760192 TAGTCCACGGCTAAGGTCTC 58.240 55.000 0.00 0.00 0.00 3.36
80 81 2.032620 CATAGTCCACGGCTAAGGTCT 58.967 52.381 0.00 0.00 0.00 3.85
81 82 1.068741 CCATAGTCCACGGCTAAGGTC 59.931 57.143 0.00 0.00 0.00 3.85
82 83 1.120530 CCATAGTCCACGGCTAAGGT 58.879 55.000 0.00 0.00 0.00 3.50
83 84 1.068741 GACCATAGTCCACGGCTAAGG 59.931 57.143 7.05 7.05 37.00 2.69
84 85 1.754803 TGACCATAGTCCACGGCTAAG 59.245 52.381 0.00 0.00 42.81 2.18
85 86 1.855295 TGACCATAGTCCACGGCTAA 58.145 50.000 0.00 0.00 42.81 3.09
86 87 2.082140 ATGACCATAGTCCACGGCTA 57.918 50.000 0.00 0.00 42.81 3.93
87 88 1.139058 GAATGACCATAGTCCACGGCT 59.861 52.381 0.00 0.00 42.81 5.52
88 89 1.134521 TGAATGACCATAGTCCACGGC 60.135 52.381 0.00 0.00 42.81 5.68
89 90 2.979814 TGAATGACCATAGTCCACGG 57.020 50.000 0.00 0.00 42.81 4.94
90 91 5.353956 TCAAAATGAATGACCATAGTCCACG 59.646 40.000 0.00 0.00 42.81 4.94
91 92 6.757897 TCAAAATGAATGACCATAGTCCAC 57.242 37.500 0.00 0.00 42.81 4.02
92 93 6.377996 CCTTCAAAATGAATGACCATAGTCCA 59.622 38.462 0.00 0.00 35.59 4.02
93 94 6.681368 GCCTTCAAAATGAATGACCATAGTCC 60.681 42.308 0.42 0.00 35.59 3.85
94 95 6.096001 AGCCTTCAAAATGAATGACCATAGTC 59.904 38.462 0.42 0.00 35.59 2.59
95 96 5.954150 AGCCTTCAAAATGAATGACCATAGT 59.046 36.000 0.42 0.00 35.59 2.12
96 97 6.095860 TCAGCCTTCAAAATGAATGACCATAG 59.904 38.462 0.42 0.00 35.59 2.23
97 98 5.951148 TCAGCCTTCAAAATGAATGACCATA 59.049 36.000 0.42 0.00 35.59 2.74
98 99 4.773674 TCAGCCTTCAAAATGAATGACCAT 59.226 37.500 0.42 0.00 35.59 3.55
99 100 4.151121 TCAGCCTTCAAAATGAATGACCA 58.849 39.130 0.42 0.00 35.59 4.02
100 101 4.789012 TCAGCCTTCAAAATGAATGACC 57.211 40.909 0.42 0.00 35.59 4.02
101 102 6.145048 CAGTTTCAGCCTTCAAAATGAATGAC 59.855 38.462 0.42 0.00 35.59 3.06
102 103 6.040729 TCAGTTTCAGCCTTCAAAATGAATGA 59.959 34.615 0.42 0.00 34.58 2.57
103 104 6.218019 TCAGTTTCAGCCTTCAAAATGAATG 58.782 36.000 0.00 0.00 34.58 2.67
104 105 6.409524 TCAGTTTCAGCCTTCAAAATGAAT 57.590 33.333 0.00 0.00 34.58 2.57
105 106 5.850557 TCAGTTTCAGCCTTCAAAATGAA 57.149 34.783 0.00 0.00 34.58 2.57
106 107 5.221303 CCTTCAGTTTCAGCCTTCAAAATGA 60.221 40.000 0.00 0.00 35.43 2.57
107 108 4.986659 CCTTCAGTTTCAGCCTTCAAAATG 59.013 41.667 0.00 0.00 0.00 2.32
108 109 4.039609 CCCTTCAGTTTCAGCCTTCAAAAT 59.960 41.667 0.00 0.00 0.00 1.82
109 110 3.384467 CCCTTCAGTTTCAGCCTTCAAAA 59.616 43.478 0.00 0.00 0.00 2.44
110 111 2.958355 CCCTTCAGTTTCAGCCTTCAAA 59.042 45.455 0.00 0.00 0.00 2.69
111 112 2.091885 ACCCTTCAGTTTCAGCCTTCAA 60.092 45.455 0.00 0.00 0.00 2.69
112 113 1.494721 ACCCTTCAGTTTCAGCCTTCA 59.505 47.619 0.00 0.00 0.00 3.02
113 114 1.882623 CACCCTTCAGTTTCAGCCTTC 59.117 52.381 0.00 0.00 0.00 3.46
114 115 1.494721 TCACCCTTCAGTTTCAGCCTT 59.505 47.619 0.00 0.00 0.00 4.35
115 116 1.140312 TCACCCTTCAGTTTCAGCCT 58.860 50.000 0.00 0.00 0.00 4.58
116 117 2.087646 GATCACCCTTCAGTTTCAGCC 58.912 52.381 0.00 0.00 0.00 4.85
117 118 2.783135 TGATCACCCTTCAGTTTCAGC 58.217 47.619 0.00 0.00 0.00 4.26
118 119 5.123502 CAGAATGATCACCCTTCAGTTTCAG 59.876 44.000 0.00 0.00 39.69 3.02
119 120 5.005740 CAGAATGATCACCCTTCAGTTTCA 58.994 41.667 0.00 0.00 39.69 2.69
120 121 5.006386 ACAGAATGATCACCCTTCAGTTTC 58.994 41.667 0.00 0.00 39.69 2.78
127 128 2.173569 GGCCTACAGAATGATCACCCTT 59.826 50.000 0.00 0.00 39.69 3.95
135 136 0.975556 TCCAGCGGCCTACAGAATGA 60.976 55.000 0.00 0.00 39.69 2.57
142 143 2.820037 GCAACTCCAGCGGCCTAC 60.820 66.667 0.00 0.00 0.00 3.18
154 155 1.001020 TTCATGATGGCCGGCAACT 60.001 52.632 30.85 12.08 0.00 3.16
165 166 2.738846 GCAGTTCACGTCAGTTCATGAT 59.261 45.455 0.00 0.00 40.92 2.45
166 167 2.135139 GCAGTTCACGTCAGTTCATGA 58.865 47.619 0.00 0.00 34.79 3.07
191 192 1.789078 CGGCCATAGTTCATGCCAGC 61.789 60.000 2.24 0.00 33.09 4.85
192 193 0.464373 ACGGCCATAGTTCATGCCAG 60.464 55.000 2.24 0.00 33.09 4.85
208 212 6.560253 AAGATATAGCTAAAATGGCAACGG 57.440 37.500 0.00 0.00 42.51 4.44
211 215 9.585099 CAACAAAAGATATAGCTAAAATGGCAA 57.415 29.630 0.00 0.00 0.00 4.52
221 225 9.762933 TTTTTGAAAGCAACAAAAGATATAGCT 57.237 25.926 12.64 0.00 44.25 3.32
226 230 9.500864 GCAAATTTTTGAAAGCAACAAAAGATA 57.499 25.926 7.21 3.55 44.25 1.98
232 236 5.515626 GCATGCAAATTTTTGAAAGCAACAA 59.484 32.000 14.21 0.00 39.55 2.83
258 262 2.828868 GGCCATATCTGGTCCGCA 59.171 61.111 0.00 0.00 41.64 5.69
267 271 3.374745 CGACAGCATTTTTGGCCATATC 58.625 45.455 6.09 0.00 0.00 1.63
270 274 0.390209 GCGACAGCATTTTTGGCCAT 60.390 50.000 6.09 0.00 44.35 4.40
271 275 1.006337 GCGACAGCATTTTTGGCCA 60.006 52.632 0.00 0.00 44.35 5.36
289 293 3.313007 CTGATGTGCGCCCAACGTG 62.313 63.158 4.18 0.00 46.11 4.49
290 294 3.049674 CTGATGTGCGCCCAACGT 61.050 61.111 4.18 0.00 46.11 3.99
331 335 4.481112 GGTGGCAATGAAGCGGCG 62.481 66.667 0.51 0.51 34.64 6.46
333 337 2.753966 CGAGGTGGCAATGAAGCGG 61.754 63.158 0.00 0.00 34.64 5.52
335 339 0.881118 TTTCGAGGTGGCAATGAAGC 59.119 50.000 0.00 0.00 0.00 3.86
337 341 1.885887 CCTTTTCGAGGTGGCAATGAA 59.114 47.619 0.00 0.00 40.95 2.57
338 342 1.073125 TCCTTTTCGAGGTGGCAATGA 59.927 47.619 0.00 0.00 46.39 2.57
349 353 2.991190 CTCCGAATTTCGTCCTTTTCGA 59.009 45.455 16.89 4.41 42.55 3.71
351 355 5.352643 TTTCTCCGAATTTCGTCCTTTTC 57.647 39.130 16.89 0.00 38.40 2.29
355 359 2.735134 CGTTTTCTCCGAATTTCGTCCT 59.265 45.455 16.89 0.00 38.40 3.85
367 371 4.537015 CCAAACAGACATTCGTTTTCTCC 58.463 43.478 0.00 0.00 33.14 3.71
370 374 4.561735 TCCCAAACAGACATTCGTTTTC 57.438 40.909 0.00 0.00 33.14 2.29
385 389 2.536761 AACTCGAACACGATCCCAAA 57.463 45.000 0.00 0.00 35.51 3.28
386 390 2.353011 GGTAACTCGAACACGATCCCAA 60.353 50.000 0.00 0.00 35.51 4.12
387 391 1.203052 GGTAACTCGAACACGATCCCA 59.797 52.381 0.00 0.00 35.51 4.37
388 392 1.470458 GGGTAACTCGAACACGATCCC 60.470 57.143 0.00 0.00 35.51 3.85
389 393 1.475682 AGGGTAACTCGAACACGATCC 59.524 52.381 0.00 0.00 35.51 3.36
391 395 4.789012 TTAAGGGTAACTCGAACACGAT 57.211 40.909 0.00 0.00 35.51 3.73
392 396 4.582701 TTTAAGGGTAACTCGAACACGA 57.417 40.909 0.00 0.00 34.81 4.35
397 401 9.211485 CTAAATCTGTTTTAAGGGTAACTCGAA 57.789 33.333 0.00 0.00 29.52 3.71
398 402 7.820872 CCTAAATCTGTTTTAAGGGTAACTCGA 59.179 37.037 0.00 0.00 29.52 4.04
399 403 7.413767 GCCTAAATCTGTTTTAAGGGTAACTCG 60.414 40.741 0.00 0.00 29.52 4.18
405 409 7.639378 TCTATGCCTAAATCTGTTTTAAGGGT 58.361 34.615 0.00 0.00 29.52 4.34
487 492 4.830046 GCCCTCCTCTTTTTCTTTCTTTCT 59.170 41.667 0.00 0.00 0.00 2.52
488 493 4.021894 GGCCCTCCTCTTTTTCTTTCTTTC 60.022 45.833 0.00 0.00 0.00 2.62
489 494 3.898123 GGCCCTCCTCTTTTTCTTTCTTT 59.102 43.478 0.00 0.00 0.00 2.52
490 495 3.501349 GGCCCTCCTCTTTTTCTTTCTT 58.499 45.455 0.00 0.00 0.00 2.52
531 536 3.494336 GCATCGTGCGAGCTTGCT 61.494 61.111 26.07 3.35 31.71 3.91
571 580 9.813446 AGTAGTAATAGTCCTTTATGAAAACCG 57.187 33.333 0.00 0.00 0.00 4.44
581 590 9.549078 GTACCGTAGTAGTAGTAATAGTCCTTT 57.451 37.037 0.00 0.00 0.00 3.11
582 591 8.705594 TGTACCGTAGTAGTAGTAATAGTCCTT 58.294 37.037 0.00 0.00 0.00 3.36
583 592 8.145122 GTGTACCGTAGTAGTAGTAATAGTCCT 58.855 40.741 0.00 0.00 0.00 3.85
584 593 8.145122 AGTGTACCGTAGTAGTAGTAATAGTCC 58.855 40.741 0.00 0.00 0.00 3.85
586 595 9.968870 GTAGTGTACCGTAGTAGTAGTAATAGT 57.031 37.037 0.00 0.00 0.00 2.12
590 599 8.630917 CCTAGTAGTGTACCGTAGTAGTAGTAA 58.369 40.741 10.43 0.00 30.28 2.24
591 600 7.230913 CCCTAGTAGTGTACCGTAGTAGTAGTA 59.769 44.444 10.43 0.00 30.28 1.82
623 632 2.671619 TTACGGCACCCAAGCAGC 60.672 61.111 0.00 0.00 35.83 5.25
624 633 1.302511 AGTTACGGCACCCAAGCAG 60.303 57.895 0.00 0.00 35.83 4.24
625 634 1.599518 CAGTTACGGCACCCAAGCA 60.600 57.895 0.00 0.00 35.83 3.91
626 635 2.978018 GCAGTTACGGCACCCAAGC 61.978 63.158 2.05 0.00 0.00 4.01
627 636 1.599518 TGCAGTTACGGCACCCAAG 60.600 57.895 6.01 0.00 36.11 3.61
628 637 2.511403 TGCAGTTACGGCACCCAA 59.489 55.556 6.01 0.00 36.11 4.12
633 642 0.037697 CTGTAGGTGCAGTTACGGCA 60.038 55.000 6.01 6.01 39.32 5.69
634 643 0.037605 ACTGTAGGTGCAGTTACGGC 60.038 55.000 13.63 0.00 46.45 5.68
641 650 2.768253 TGATCCAACTGTAGGTGCAG 57.232 50.000 0.00 0.00 41.92 4.41
642 651 3.346315 CATTGATCCAACTGTAGGTGCA 58.654 45.455 0.00 0.00 0.00 4.57
643 652 2.684881 CCATTGATCCAACTGTAGGTGC 59.315 50.000 0.00 0.00 0.00 5.01
644 653 2.684881 GCCATTGATCCAACTGTAGGTG 59.315 50.000 0.00 0.00 0.00 4.00
645 654 2.308570 TGCCATTGATCCAACTGTAGGT 59.691 45.455 0.00 0.00 0.00 3.08
646 655 3.003394 TGCCATTGATCCAACTGTAGG 57.997 47.619 0.00 0.00 0.00 3.18
647 656 3.949754 ACATGCCATTGATCCAACTGTAG 59.050 43.478 0.00 0.00 0.00 2.74
648 657 3.695556 CACATGCCATTGATCCAACTGTA 59.304 43.478 0.00 0.00 0.00 2.74
649 658 2.494471 CACATGCCATTGATCCAACTGT 59.506 45.455 0.00 0.00 0.00 3.55
650 659 2.159156 CCACATGCCATTGATCCAACTG 60.159 50.000 0.00 0.00 0.00 3.16
651 660 2.104967 CCACATGCCATTGATCCAACT 58.895 47.619 0.00 0.00 0.00 3.16
652 661 1.137479 CCCACATGCCATTGATCCAAC 59.863 52.381 0.00 0.00 0.00 3.77
653 662 1.487300 CCCACATGCCATTGATCCAA 58.513 50.000 0.00 0.00 0.00 3.53
654 663 1.044231 GCCCACATGCCATTGATCCA 61.044 55.000 0.00 0.00 0.00 3.41
655 664 1.744014 GCCCACATGCCATTGATCC 59.256 57.895 0.00 0.00 0.00 3.36
665 674 4.415150 AGACGGCTGGCCCACATG 62.415 66.667 0.00 0.00 0.00 3.21
666 675 4.415150 CAGACGGCTGGCCCACAT 62.415 66.667 11.57 0.00 38.51 3.21
668 677 3.248446 TAACAGACGGCTGGCCCAC 62.248 63.158 24.99 0.00 46.60 4.61
669 678 2.925706 TAACAGACGGCTGGCCCA 60.926 61.111 24.99 0.65 46.60 5.36
670 679 2.125106 CTAACAGACGGCTGGCCC 60.125 66.667 24.99 0.00 46.60 5.80
671 680 2.125106 CCTAACAGACGGCTGGCC 60.125 66.667 24.99 0.00 46.60 5.36
672 681 2.820037 GCCTAACAGACGGCTGGC 60.820 66.667 24.99 13.09 46.60 4.85
673 682 2.125106 GGCCTAACAGACGGCTGG 60.125 66.667 24.99 5.44 46.60 4.85
674 683 2.125106 GGGCCTAACAGACGGCTG 60.125 66.667 19.12 19.12 45.57 4.85
675 684 2.606519 TGGGCCTAACAGACGGCT 60.607 61.111 4.53 0.00 45.57 5.52
676 685 2.436115 GTGGGCCTAACAGACGGC 60.436 66.667 4.53 0.00 45.55 5.68
677 686 0.744414 CATGTGGGCCTAACAGACGG 60.744 60.000 15.50 4.10 0.00 4.79
678 687 0.036388 ACATGTGGGCCTAACAGACG 60.036 55.000 15.50 9.88 0.00 4.18
679 688 1.003118 TGACATGTGGGCCTAACAGAC 59.997 52.381 1.15 10.30 0.00 3.51
680 689 1.357137 TGACATGTGGGCCTAACAGA 58.643 50.000 1.15 0.00 0.00 3.41
681 690 2.424601 CAATGACATGTGGGCCTAACAG 59.575 50.000 1.15 10.70 0.00 3.16
682 691 2.445427 CAATGACATGTGGGCCTAACA 58.555 47.619 1.15 13.18 0.00 2.41
683 692 1.750778 CCAATGACATGTGGGCCTAAC 59.249 52.381 1.15 1.86 0.00 2.34
684 693 1.959508 GCCAATGACATGTGGGCCTAA 60.960 52.381 1.15 0.00 38.70 2.69
685 694 0.395586 GCCAATGACATGTGGGCCTA 60.396 55.000 1.15 0.00 38.70 3.93
686 695 1.683365 GCCAATGACATGTGGGCCT 60.683 57.895 1.15 0.00 38.70 5.19
687 696 2.894919 GCCAATGACATGTGGGCC 59.105 61.111 1.15 0.00 38.70 5.80
689 698 0.903924 TTGGGCCAATGACATGTGGG 60.904 55.000 16.66 0.06 35.28 4.61
690 699 0.247185 GTTGGGCCAATGACATGTGG 59.753 55.000 23.95 0.00 38.00 4.17
691 700 1.067425 CAGTTGGGCCAATGACATGTG 60.067 52.381 23.95 7.72 0.00 3.21
692 701 1.259609 CAGTTGGGCCAATGACATGT 58.740 50.000 23.95 0.00 0.00 3.21
693 702 0.108520 GCAGTTGGGCCAATGACATG 60.109 55.000 23.95 16.27 0.00 3.21
694 703 0.542467 TGCAGTTGGGCCAATGACAT 60.542 50.000 23.95 3.67 0.00 3.06
695 704 1.152589 TGCAGTTGGGCCAATGACA 60.153 52.632 23.95 17.12 0.00 3.58
696 705 1.588082 CTGCAGTTGGGCCAATGAC 59.412 57.895 23.95 10.82 0.00 3.06
697 706 1.607178 CCTGCAGTTGGGCCAATGA 60.607 57.895 23.95 5.80 0.00 2.57
698 707 0.611618 TACCTGCAGTTGGGCCAATG 60.612 55.000 23.95 20.59 0.00 2.82
699 708 0.611896 GTACCTGCAGTTGGGCCAAT 60.612 55.000 23.95 6.89 0.00 3.16
700 709 1.228429 GTACCTGCAGTTGGGCCAA 60.228 57.895 16.66 16.66 0.00 4.52
701 710 2.410322 CTGTACCTGCAGTTGGGCCA 62.410 60.000 13.81 0.00 0.00 5.36
702 711 1.675641 CTGTACCTGCAGTTGGGCC 60.676 63.158 13.81 0.00 0.00 5.80
703 712 1.073199 ACTGTACCTGCAGTTGGGC 59.927 57.895 13.81 0.00 46.45 5.36
709 718 0.037697 TGCCGTAACTGTACCTGCAG 60.038 55.000 6.78 6.78 41.92 4.41
710 719 0.320073 GTGCCGTAACTGTACCTGCA 60.320 55.000 0.00 0.00 34.07 4.41
711 720 0.037605 AGTGCCGTAACTGTACCTGC 60.038 55.000 0.00 0.00 0.00 4.85
712 721 1.271379 TCAGTGCCGTAACTGTACCTG 59.729 52.381 12.80 0.00 46.33 4.00
713 722 1.624336 TCAGTGCCGTAACTGTACCT 58.376 50.000 12.80 0.00 46.33 3.08
714 723 2.288640 ACTTCAGTGCCGTAACTGTACC 60.289 50.000 12.80 0.00 46.33 3.34
715 724 3.022607 ACTTCAGTGCCGTAACTGTAC 57.977 47.619 12.80 0.00 46.33 2.90
716 725 3.068448 TGAACTTCAGTGCCGTAACTGTA 59.932 43.478 12.80 4.74 46.33 2.74
717 726 2.159014 TGAACTTCAGTGCCGTAACTGT 60.159 45.455 12.80 0.00 46.33 3.55
719 728 2.755650 CTGAACTTCAGTGCCGTAACT 58.244 47.619 10.27 0.00 39.58 2.24
729 738 2.234908 CCCTGGTAGGACTGAACTTCAG 59.765 54.545 16.01 16.01 40.47 3.02
730 739 2.257207 CCCTGGTAGGACTGAACTTCA 58.743 52.381 0.00 0.00 37.67 3.02
731 740 1.066071 GCCCTGGTAGGACTGAACTTC 60.066 57.143 0.00 0.00 37.67 3.01
732 741 0.984995 GCCCTGGTAGGACTGAACTT 59.015 55.000 0.00 0.00 37.67 2.66
733 742 0.178903 TGCCCTGGTAGGACTGAACT 60.179 55.000 0.00 0.00 37.67 3.01
734 743 0.912486 ATGCCCTGGTAGGACTGAAC 59.088 55.000 0.00 0.00 37.67 3.18
735 744 2.116238 GTATGCCCTGGTAGGACTGAA 58.884 52.381 0.00 0.00 37.67 3.02
736 745 1.691482 GGTATGCCCTGGTAGGACTGA 60.691 57.143 0.00 0.00 37.67 3.41
737 746 0.759346 GGTATGCCCTGGTAGGACTG 59.241 60.000 0.00 0.00 37.67 3.51
738 747 0.341961 TGGTATGCCCTGGTAGGACT 59.658 55.000 0.00 0.00 37.67 3.85
739 748 0.759346 CTGGTATGCCCTGGTAGGAC 59.241 60.000 0.00 0.00 37.67 3.85
740 749 1.054406 GCTGGTATGCCCTGGTAGGA 61.054 60.000 0.00 0.00 37.67 2.94
741 750 1.344953 TGCTGGTATGCCCTGGTAGG 61.345 60.000 0.00 0.00 34.30 3.18
742 751 0.546122 TTGCTGGTATGCCCTGGTAG 59.454 55.000 0.00 0.00 32.93 3.18
743 752 0.995803 TTTGCTGGTATGCCCTGGTA 59.004 50.000 0.00 0.00 32.93 3.25
744 753 0.114168 TTTTGCTGGTATGCCCTGGT 59.886 50.000 0.00 0.00 32.93 4.00
745 754 1.265236 TTTTTGCTGGTATGCCCTGG 58.735 50.000 0.00 0.00 32.93 4.45
774 783 2.887568 CAGCTACGGGCAAGAGCG 60.888 66.667 5.51 0.00 44.79 5.03
816 825 2.555325 GTGGGCCGCTATTTATAAACCC 59.445 50.000 10.52 10.88 36.60 4.11
1307 1318 2.342179 GGAGCGAGAAAGAGGAAACAG 58.658 52.381 0.00 0.00 0.00 3.16
1349 1361 4.418401 CCAAATGTGGCACGCCGG 62.418 66.667 13.77 0.00 38.35 6.13
1377 1399 1.056103 GTCGTATGATAGCAGCGCTG 58.944 55.000 32.83 32.83 40.10 5.18
1381 1403 3.243234 ACAGACAGTCGTATGATAGCAGC 60.243 47.826 0.00 0.00 36.41 5.25
1395 1417 5.761205 AGGTAGATGTATCAGACAGACAGT 58.239 41.667 0.00 0.00 42.79 3.55
1402 1424 6.819649 AGCGTAGATAGGTAGATGTATCAGAC 59.180 42.308 0.00 0.00 0.00 3.51
1540 1588 9.939802 CTCCTGGTTTACTTAGTAAAATGTAGT 57.060 33.333 17.75 0.00 39.28 2.73
1541 1589 9.379791 CCTCCTGGTTTACTTAGTAAAATGTAG 57.620 37.037 17.75 12.92 39.28 2.74
1625 1674 4.351127 ACTGGAAAACCGATAGTCCTACT 58.649 43.478 0.00 0.00 0.00 2.57
1626 1675 4.401837 AGACTGGAAAACCGATAGTCCTAC 59.598 45.833 0.00 0.00 38.76 3.18
1630 1679 5.831702 TCTAGACTGGAAAACCGATAGTC 57.168 43.478 0.00 0.00 38.37 2.59
1644 1693 7.088905 AGATTGCAAATTGCTTTTCTAGACTG 58.911 34.615 19.34 0.00 45.31 3.51
1781 1842 6.420008 CAGTGCTTTGTACGAGTAGTAAAAGT 59.580 38.462 13.78 0.00 34.28 2.66
1898 1960 4.561105 TCAAACTTTTTCGTGTTGCCTTT 58.439 34.783 0.00 0.00 0.00 3.11
1903 1965 7.840797 GTGATTCAATCAAACTTTTTCGTGTTG 59.159 33.333 0.29 0.00 41.69 3.33
1972 2034 2.224209 TGTTCGAAGGACCTTGAAGACC 60.224 50.000 12.68 1.73 0.00 3.85
1989 2051 1.032014 AGCATTGGTGTGTGGTGTTC 58.968 50.000 0.00 0.00 0.00 3.18
2022 2084 8.488668 AGATGCATGCATGATAATGGTATACTA 58.511 33.333 36.73 0.42 36.70 1.82
2023 2085 7.282450 CAGATGCATGCATGATAATGGTATACT 59.718 37.037 36.73 19.09 36.70 2.12
2024 2086 7.281549 TCAGATGCATGCATGATAATGGTATAC 59.718 37.037 36.73 17.18 36.70 1.47
2025 2087 7.340256 TCAGATGCATGCATGATAATGGTATA 58.660 34.615 36.73 9.07 36.70 1.47
2026 2088 6.184789 TCAGATGCATGCATGATAATGGTAT 58.815 36.000 36.73 10.02 36.70 2.73
2079 2262 7.317722 ACCACTCCATATAAATTACTCCTCC 57.682 40.000 0.00 0.00 0.00 4.30
2080 2263 8.312564 GGTACCACTCCATATAAATTACTCCTC 58.687 40.741 7.15 0.00 0.00 3.71
2114 2300 6.528072 CGGCTTCAGAAAAGGTTTGATTAATC 59.472 38.462 8.60 8.60 0.00 1.75
2261 2631 5.410746 GCATGTAGTAGAGTGCCGTAGTATA 59.589 44.000 0.00 0.00 0.00 1.47
2269 2639 2.672961 TGTGCATGTAGTAGAGTGCC 57.327 50.000 0.00 0.00 36.79 5.01
2343 2714 6.108687 CCTGAGTTTCTTCCTTTTTGCTTTT 58.891 36.000 0.00 0.00 0.00 2.27
2348 2721 3.384467 TGCCCTGAGTTTCTTCCTTTTTG 59.616 43.478 0.00 0.00 0.00 2.44
2367 2740 2.356793 CCCATCGATCGAGCTGCC 60.357 66.667 23.84 0.00 0.00 4.85
2424 3020 3.749609 GCGGGCGTACTATATTTTGGAAT 59.250 43.478 0.00 0.00 0.00 3.01
2445 3041 0.179124 AGTTGGATCTCGAGAAGCGC 60.179 55.000 20.91 0.00 40.61 5.92
2451 3047 3.319137 TGGTCAAAGTTGGATCTCGAG 57.681 47.619 5.93 5.93 0.00 4.04
2481 3077 1.300620 CCGCAGTTGGTCTCGTTGA 60.301 57.895 0.00 0.00 0.00 3.18
2483 3079 2.665185 GCCGCAGTTGGTCTCGTT 60.665 61.111 0.00 0.00 0.00 3.85
2492 3088 2.410466 TTTTTCTTCCGCCGCAGTT 58.590 47.368 0.00 0.00 0.00 3.16
2548 3144 4.481463 CGGCGGGGCAAAAATTATATTAG 58.519 43.478 0.00 0.00 0.00 1.73
2550 3146 2.547007 GCGGCGGGGCAAAAATTATATT 60.547 45.455 9.78 0.00 0.00 1.28
2551 3147 1.000394 GCGGCGGGGCAAAAATTATAT 60.000 47.619 9.78 0.00 0.00 0.86
2564 3160 3.061848 AAGACCAATTGCGGCGGG 61.062 61.111 9.78 2.79 0.00 6.13
2567 3163 2.017049 ACTATCAAGACCAATTGCGGC 58.983 47.619 0.00 0.00 0.00 6.53
2568 3164 5.811399 TTAACTATCAAGACCAATTGCGG 57.189 39.130 0.00 0.00 0.00 5.69
2574 3170 8.851541 ACCGTAAATTTAACTATCAAGACCAA 57.148 30.769 0.00 0.00 0.00 3.67
2585 3182 7.646526 GCTTCAACTTTGACCGTAAATTTAACT 59.353 33.333 0.00 0.00 36.83 2.24
2586 3183 7.432838 TGCTTCAACTTTGACCGTAAATTTAAC 59.567 33.333 0.00 0.00 36.83 2.01
2594 3191 1.862201 CGTGCTTCAACTTTGACCGTA 59.138 47.619 0.00 0.00 36.83 4.02
2596 3193 0.934496 TCGTGCTTCAACTTTGACCG 59.066 50.000 0.00 0.00 36.83 4.79
2615 3212 6.155221 TCACAATGTAGTGCTTCCTCTATCTT 59.845 38.462 0.00 0.00 39.35 2.40
2617 3214 5.907207 TCACAATGTAGTGCTTCCTCTATC 58.093 41.667 0.00 0.00 39.35 2.08
2619 3216 5.738619 TTCACAATGTAGTGCTTCCTCTA 57.261 39.130 0.00 0.00 39.35 2.43
2620 3217 4.623932 TTCACAATGTAGTGCTTCCTCT 57.376 40.909 0.00 0.00 39.35 3.69
2626 3223 4.012374 CCTCCATTTCACAATGTAGTGCT 58.988 43.478 0.00 0.00 38.58 4.40
2629 3226 4.289672 ACTCCCTCCATTTCACAATGTAGT 59.710 41.667 0.00 0.00 38.58 2.73
2633 3230 6.780457 AAATACTCCCTCCATTTCACAATG 57.220 37.500 0.00 0.00 39.79 2.82
2637 3234 9.057089 CACTATAAAATACTCCCTCCATTTCAC 57.943 37.037 0.00 0.00 0.00 3.18
2640 3237 8.778059 TGTCACTATAAAATACTCCCTCCATTT 58.222 33.333 0.00 0.00 0.00 2.32
2643 3240 6.901300 AGTGTCACTATAAAATACTCCCTCCA 59.099 38.462 2.87 0.00 0.00 3.86
2661 3258 7.692088 TCTATACTTTTACTAGCGAGTGTCAC 58.308 38.462 10.02 0.00 36.28 3.67
3215 3862 1.345410 GTTGCCACAAACACACACAC 58.655 50.000 0.00 0.00 0.00 3.82
3246 3893 8.986477 AATTTTGGTTGCAAGTATCTATTGAC 57.014 30.769 0.00 0.00 0.00 3.18
3478 4129 0.465460 TGGTTCCAGTCCACACTTGC 60.465 55.000 0.00 0.00 0.00 4.01
3514 4165 8.754991 TGAGTATTCAGTTAAGGGTTTCAAAA 57.245 30.769 0.00 0.00 0.00 2.44
3536 4191 5.996219 TGGAACACAAATTACACGAATGAG 58.004 37.500 0.00 0.00 0.00 2.90
3971 4632 6.013206 TGCTTACAATATATGGAACCCCGTAT 60.013 38.462 0.00 0.00 44.64 3.06
4206 4899 5.441709 TCGACCACGATATACTTGCAATA 57.558 39.130 0.00 0.00 43.81 1.90
4221 4915 1.016130 CCTGCACTGTCATCGACCAC 61.016 60.000 0.00 0.00 0.00 4.16
4270 5064 9.958234 GGGTATGTTTACTAAGTAGTAGCTAAC 57.042 37.037 0.00 0.00 39.69 2.34
4281 5082 8.842358 TTCTTTCAGTGGGTATGTTTACTAAG 57.158 34.615 0.00 0.00 0.00 2.18
4287 5088 6.783708 TGTTTTCTTTCAGTGGGTATGTTT 57.216 33.333 0.00 0.00 0.00 2.83
4288 5089 6.976934 ATGTTTTCTTTCAGTGGGTATGTT 57.023 33.333 0.00 0.00 0.00 2.71
4289 5090 6.976934 AATGTTTTCTTTCAGTGGGTATGT 57.023 33.333 0.00 0.00 0.00 2.29
4290 5091 7.029563 GCTAATGTTTTCTTTCAGTGGGTATG 58.970 38.462 0.00 0.00 0.00 2.39
4473 5547 1.970640 CATCCATAGTCCCGATCCACA 59.029 52.381 0.00 0.00 0.00 4.17
4615 5693 9.154632 ACAAGTACAATATATGGATGAGGTACA 57.845 33.333 0.00 0.00 33.99 2.90
4623 5701 6.944290 AGCATGCACAAGTACAATATATGGAT 59.056 34.615 21.98 0.00 0.00 3.41
4652 5730 7.695480 AACCAAGGTTAAAGTTGCAATTTTT 57.305 28.000 22.76 17.90 36.46 1.94
4653 5731 7.695480 AAACCAAGGTTAAAGTTGCAATTTT 57.305 28.000 21.55 21.55 37.35 1.82
4654 5732 7.695480 AAAACCAAGGTTAAAGTTGCAATTT 57.305 28.000 0.59 0.62 37.35 1.82
4760 5839 1.741770 GGACGGTGATGAGGTGCAC 60.742 63.158 8.80 8.80 0.00 4.57
4912 5991 7.148557 GCATTCTTCCTTGAACAGTAGTAACTC 60.149 40.741 0.00 0.00 31.97 3.01
5282 6361 9.206870 ACAAAAACAATAAAGCACCAATGATAG 57.793 29.630 0.00 0.00 0.00 2.08
5339 6422 4.883083 CAAGACTGCAACTACTGGAACTA 58.117 43.478 0.00 0.00 0.00 2.24
5432 6516 7.320443 TCATTGTATGACTAAACTTGCCATC 57.680 36.000 0.00 0.00 33.59 3.51
5434 6518 6.939730 TCTTCATTGTATGACTAAACTTGCCA 59.060 34.615 0.00 0.00 39.39 4.92
5686 7026 0.320421 CGTCCGGCCAAGAAAGAGAA 60.320 55.000 2.24 0.00 0.00 2.87
5714 7054 4.948004 AGATCTCTACGTTGTACATGGTCA 59.052 41.667 0.00 0.00 0.00 4.02
5727 7067 4.408182 AAACATCCCCAAGATCTCTACG 57.592 45.455 0.00 0.00 30.59 3.51
5735 7075 5.070313 CCTCAAAAGAAAAACATCCCCAAGA 59.930 40.000 0.00 0.00 0.00 3.02
5736 7076 5.299949 CCTCAAAAGAAAAACATCCCCAAG 58.700 41.667 0.00 0.00 0.00 3.61
5737 7077 4.102367 CCCTCAAAAGAAAAACATCCCCAA 59.898 41.667 0.00 0.00 0.00 4.12
5738 7078 3.645687 CCCTCAAAAGAAAAACATCCCCA 59.354 43.478 0.00 0.00 0.00 4.96
5739 7079 3.901222 TCCCTCAAAAGAAAAACATCCCC 59.099 43.478 0.00 0.00 0.00 4.81
5740 7080 5.482006 CATCCCTCAAAAGAAAAACATCCC 58.518 41.667 0.00 0.00 0.00 3.85
5741 7081 5.245977 TCCATCCCTCAAAAGAAAAACATCC 59.754 40.000 0.00 0.00 0.00 3.51
5742 7082 6.345096 TCCATCCCTCAAAAGAAAAACATC 57.655 37.500 0.00 0.00 0.00 3.06
5743 7083 6.727697 AGATCCATCCCTCAAAAGAAAAACAT 59.272 34.615 0.00 0.00 0.00 2.71
5744 7084 6.077322 AGATCCATCCCTCAAAAGAAAAACA 58.923 36.000 0.00 0.00 0.00 2.83
5745 7085 6.596309 AGATCCATCCCTCAAAAGAAAAAC 57.404 37.500 0.00 0.00 0.00 2.43
5746 7086 6.014327 CCAAGATCCATCCCTCAAAAGAAAAA 60.014 38.462 0.00 0.00 0.00 1.94
5747 7087 5.481473 CCAAGATCCATCCCTCAAAAGAAAA 59.519 40.000 0.00 0.00 0.00 2.29
5748 7088 5.018809 CCAAGATCCATCCCTCAAAAGAAA 58.981 41.667 0.00 0.00 0.00 2.52
5749 7089 4.292041 TCCAAGATCCATCCCTCAAAAGAA 59.708 41.667 0.00 0.00 0.00 2.52
5797 7150 1.128200 CGGATCCTGGTTGTATCCCA 58.872 55.000 10.75 0.00 36.59 4.37
5805 7158 1.418334 CTCATCTCCGGATCCTGGTT 58.582 55.000 18.33 6.24 0.00 3.67
5861 7214 6.160576 AGCTGAAACTTGCCATTAGAAAAA 57.839 33.333 0.00 0.00 0.00 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.