Multiple sequence alignment - TraesCS5A01G154200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G154200 chr5A 100.000 4273 0 0 1 4273 331861322 331865594 0.000000e+00 7891.0
1 TraesCS5A01G154200 chr5A 73.770 244 47 14 390 623 462167359 462167123 3.540000e-11 80.5
2 TraesCS5A01G154200 chr5A 96.875 32 1 0 589 620 342228862 342228893 2.000000e-03 54.7
3 TraesCS5A01G154200 chr1A 97.138 3424 83 11 863 4273 155078696 155082117 0.000000e+00 5766.0
4 TraesCS5A01G154200 chr1A 86.184 304 36 4 3773 4076 29194127 29193830 1.480000e-84 324.0
5 TraesCS5A01G154200 chr1A 96.988 166 5 0 634 799 155078533 155078698 3.250000e-71 279.0
6 TraesCS5A01G154200 chr1A 72.761 268 45 18 390 632 21278036 21277772 9.920000e-07 65.8
7 TraesCS5A01G154200 chr6B 87.463 2337 248 27 1940 4270 567599426 567601723 0.000000e+00 2651.0
8 TraesCS5A01G154200 chr6B 87.591 274 34 0 2052 2325 32738842 32738569 6.890000e-83 318.0
9 TraesCS5A01G154200 chr3B 81.935 1705 272 26 2410 4090 578623312 578621620 0.000000e+00 1410.0
10 TraesCS5A01G154200 chr3B 76.998 413 90 4 3292 3701 17677308 17676898 9.240000e-57 231.0
11 TraesCS5A01G154200 chr3B 90.511 137 12 1 3559 3694 131573373 131573509 3.390000e-41 180.0
12 TraesCS5A01G154200 chr3B 72.917 624 122 31 634 1243 65190427 65189837 5.680000e-39 172.0
13 TraesCS5A01G154200 chr3B 86.842 76 6 4 634 707 578625190 578625117 9.850000e-12 82.4
14 TraesCS5A01G154200 chr4B 81.380 1638 276 23 2410 4027 476947199 476945571 0.000000e+00 1308.0
15 TraesCS5A01G154200 chr4B 76.878 679 149 8 2421 3096 1796258 1796931 1.120000e-100 377.0
16 TraesCS5A01G154200 chr4B 74.185 368 69 15 987 1352 622812243 622812586 3.470000e-26 130.0
17 TraesCS5A01G154200 chr4B 81.818 99 8 9 638 731 476949071 476948978 1.650000e-09 75.0
18 TraesCS5A01G154200 chr4B 80.000 100 20 0 633 732 622811888 622811987 1.650000e-09 75.0
19 TraesCS5A01G154200 chr2A 87.825 731 82 6 634 1360 771549607 771550334 0.000000e+00 850.0
20 TraesCS5A01G154200 chr2A 85.586 333 47 1 3773 4105 303742872 303742541 8.790000e-92 348.0
21 TraesCS5A01G154200 chr2A 79.250 400 74 8 2444 2840 727616705 727617098 1.960000e-68 270.0
22 TraesCS5A01G154200 chr2A 79.939 329 48 15 19 336 33688281 33687960 4.300000e-55 226.0
23 TraesCS5A01G154200 chr2A 90.210 143 13 1 3559 3700 303743109 303742967 7.300000e-43 185.0
24 TraesCS5A01G154200 chr7A 87.278 731 83 7 634 1360 624883094 624883818 0.000000e+00 826.0
25 TraesCS5A01G154200 chr6A 87.324 710 89 1 2411 3120 28929150 28928442 0.000000e+00 811.0
26 TraesCS5A01G154200 chr6A 86.993 715 91 2 2406 3120 28899236 28898524 0.000000e+00 804.0
27 TraesCS5A01G154200 chr6A 86.424 302 34 4 2026 2325 28899855 28899559 1.480000e-84 324.0
28 TraesCS5A01G154200 chr6A 85.762 302 36 4 2026 2325 28929577 28929281 3.210000e-81 313.0
29 TraesCS5A01G154200 chr6A 84.000 325 40 8 2026 2347 28957594 28957279 6.940000e-78 302.0
30 TraesCS5A01G154200 chr6A 90.455 220 21 0 2901 3120 28952522 28952303 1.500000e-74 291.0
31 TraesCS5A01G154200 chr6A 89.474 76 6 2 972 1045 28901610 28901535 1.260000e-15 95.3
32 TraesCS5A01G154200 chr6A 75.740 169 39 2 634 801 28960363 28960196 2.740000e-12 84.2
33 TraesCS5A01G154200 chr3A 87.304 701 88 1 2420 3120 690431265 690430566 0.000000e+00 800.0
34 TraesCS5A01G154200 chr3A 88.081 344 36 5 3757 4097 359580074 359580415 1.850000e-108 403.0
35 TraesCS5A01G154200 chr3A 83.077 325 45 7 2026 2347 690431700 690431383 1.940000e-73 287.0
36 TraesCS5A01G154200 chr5D 81.047 860 148 13 2846 3700 559669594 559668745 0.000000e+00 671.0
37 TraesCS5A01G154200 chr5D 87.417 453 51 4 2401 2853 559670068 559669622 2.280000e-142 516.0
38 TraesCS5A01G154200 chr5D 84.884 344 46 5 2024 2363 559670486 559670145 4.090000e-90 342.0
39 TraesCS5A01G154200 chr5D 87.805 246 15 9 390 633 249084170 249084402 1.510000e-69 274.0
40 TraesCS5A01G154200 chr5D 84.416 77 11 1 390 466 416798127 416798052 1.650000e-09 75.0
41 TraesCS5A01G154200 chr7B 82.157 510 76 11 3559 4059 680123580 680124083 1.420000e-114 424.0
42 TraesCS5A01G154200 chr7B 86.861 274 36 0 2052 2325 637279519 637279792 1.490000e-79 307.0
43 TraesCS5A01G154200 chr7B 90.426 94 9 0 3027 3120 637280860 637280953 1.610000e-24 124.0
44 TraesCS5A01G154200 chr7B 82.524 103 16 2 519 620 131950608 131950507 5.890000e-14 89.8
45 TraesCS5A01G154200 chr7B 84.884 86 11 2 3287 3371 592611763 592611847 7.610000e-13 86.1
46 TraesCS5A01G154200 chr4A 77.432 740 139 21 2108 2840 740897492 740896774 2.380000e-112 416.0
47 TraesCS5A01G154200 chr4A 74.486 243 42 18 390 621 728447911 728448144 2.120000e-13 87.9
48 TraesCS5A01G154200 chr6D 86.154 325 44 1 3773 4097 129172336 129172013 2.450000e-92 350.0
49 TraesCS5A01G154200 chr6D 73.389 714 159 24 616 1311 129173253 129172553 1.990000e-58 237.0
50 TraesCS5A01G154200 chr5B 91.322 242 20 1 390 630 282010180 282010421 3.190000e-86 329.0
51 TraesCS5A01G154200 chr5B 85.333 300 38 4 3770 4069 490356476 490356769 5.370000e-79 305.0
52 TraesCS5A01G154200 chrUn 85.526 304 39 3 3770 4073 95388555 95388853 3.210000e-81 313.0
53 TraesCS5A01G154200 chrUn 75.271 554 108 24 815 1355 95387169 95387706 1.990000e-58 237.0
54 TraesCS5A01G154200 chr7D 75.000 464 112 3 3237 3697 20433023 20433485 1.200000e-50 211.0
55 TraesCS5A01G154200 chr7D 78.017 232 29 12 408 620 117545293 117545065 4.490000e-25 126.0
56 TraesCS5A01G154200 chr1D 76.923 390 78 11 10 390 110896224 110895838 1.200000e-50 211.0
57 TraesCS5A01G154200 chr2B 77.749 382 58 18 19 379 34256256 34256631 4.330000e-50 209.0
58 TraesCS5A01G154200 chr2B 77.428 381 58 17 19 379 462957360 462956988 7.240000e-48 202.0
59 TraesCS5A01G154200 chr2B 78.235 170 20 15 465 620 798126393 798126559 4.550000e-15 93.5
60 TraesCS5A01G154200 chr1B 75.073 341 61 19 635 966 10553707 10554032 2.070000e-28 137.0
61 TraesCS5A01G154200 chr4D 91.429 70 5 1 987 1056 278252226 278252158 1.260000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G154200 chr5A 331861322 331865594 4272 False 7891.000000 7891 100.000000 1 4273 1 chr5A.!!$F1 4272
1 TraesCS5A01G154200 chr1A 155078533 155082117 3584 False 3022.500000 5766 97.063000 634 4273 2 chr1A.!!$F1 3639
2 TraesCS5A01G154200 chr6B 567599426 567601723 2297 False 2651.000000 2651 87.463000 1940 4270 1 chr6B.!!$F1 2330
3 TraesCS5A01G154200 chr3B 578621620 578625190 3570 True 746.200000 1410 84.388500 634 4090 2 chr3B.!!$R3 3456
4 TraesCS5A01G154200 chr4B 476945571 476949071 3500 True 691.500000 1308 81.599000 638 4027 2 chr4B.!!$R1 3389
5 TraesCS5A01G154200 chr4B 1796258 1796931 673 False 377.000000 377 76.878000 2421 3096 1 chr4B.!!$F1 675
6 TraesCS5A01G154200 chr2A 771549607 771550334 727 False 850.000000 850 87.825000 634 1360 1 chr2A.!!$F2 726
7 TraesCS5A01G154200 chr2A 303742541 303743109 568 True 266.500000 348 87.898000 3559 4105 2 chr2A.!!$R2 546
8 TraesCS5A01G154200 chr7A 624883094 624883818 724 False 826.000000 826 87.278000 634 1360 1 chr7A.!!$F1 726
9 TraesCS5A01G154200 chr6A 28928442 28929577 1135 True 562.000000 811 86.543000 2026 3120 2 chr6A.!!$R3 1094
10 TraesCS5A01G154200 chr6A 28898524 28901610 3086 True 407.766667 804 87.630333 972 3120 3 chr6A.!!$R2 2148
11 TraesCS5A01G154200 chr3A 690430566 690431700 1134 True 543.500000 800 85.190500 2026 3120 2 chr3A.!!$R1 1094
12 TraesCS5A01G154200 chr5D 559668745 559670486 1741 True 509.666667 671 84.449333 2024 3700 3 chr5D.!!$R2 1676
13 TraesCS5A01G154200 chr7B 680123580 680124083 503 False 424.000000 424 82.157000 3559 4059 1 chr7B.!!$F2 500
14 TraesCS5A01G154200 chr7B 637279519 637280953 1434 False 215.500000 307 88.643500 2052 3120 2 chr7B.!!$F3 1068
15 TraesCS5A01G154200 chr4A 740896774 740897492 718 True 416.000000 416 77.432000 2108 2840 1 chr4A.!!$R1 732
16 TraesCS5A01G154200 chr6D 129172013 129173253 1240 True 293.500000 350 79.771500 616 4097 2 chr6D.!!$R1 3481
17 TraesCS5A01G154200 chrUn 95387169 95388853 1684 False 275.000000 313 80.398500 815 4073 2 chrUn.!!$F1 3258

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
311 312 0.105709 TCCAGCCATATCCTCCGTGA 60.106 55.0 0.00 0.00 0.00 4.35 F
1462 1504 0.250467 ACAGAAGTTGCATCTGGCGT 60.250 50.0 17.75 4.56 46.81 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1738 1787 0.391130 GCATGAACGTCCTGGTGCTA 60.391 55.000 0.00 0.00 0.0 3.49 R
3357 4876 1.004745 TCTGGCTTGAATTCACTCCCC 59.995 52.381 7.89 6.76 0.0 4.81 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 2.633488 GGAGACCAATAACAGCTGGAC 58.367 52.381 19.93 0.00 36.49 4.02
48 49 2.237392 GGAGACCAATAACAGCTGGACT 59.763 50.000 19.93 5.33 39.87 3.85
49 50 3.307762 GGAGACCAATAACAGCTGGACTT 60.308 47.826 19.93 5.95 37.75 3.01
50 51 4.327680 GAGACCAATAACAGCTGGACTTT 58.672 43.478 19.93 5.55 37.75 2.66
51 52 4.729868 AGACCAATAACAGCTGGACTTTT 58.270 39.130 19.93 5.14 34.64 2.27
52 53 5.140454 AGACCAATAACAGCTGGACTTTTT 58.860 37.500 19.93 4.36 34.64 1.94
53 54 6.303839 AGACCAATAACAGCTGGACTTTTTA 58.696 36.000 19.93 6.67 34.64 1.52
54 55 6.948309 AGACCAATAACAGCTGGACTTTTTAT 59.052 34.615 19.93 8.80 34.64 1.40
55 56 7.451566 AGACCAATAACAGCTGGACTTTTTATT 59.548 33.333 19.93 14.14 34.64 1.40
56 57 8.644374 ACCAATAACAGCTGGACTTTTTATTA 57.356 30.769 19.93 4.40 36.49 0.98
57 58 9.255029 ACCAATAACAGCTGGACTTTTTATTAT 57.745 29.630 19.93 6.64 36.49 1.28
58 59 9.520204 CCAATAACAGCTGGACTTTTTATTATG 57.480 33.333 19.93 7.70 34.35 1.90
63 64 8.682936 ACAGCTGGACTTTTTATTATGATAGG 57.317 34.615 19.93 0.00 0.00 2.57
64 65 7.229506 ACAGCTGGACTTTTTATTATGATAGGC 59.770 37.037 19.93 0.00 0.00 3.93
65 66 7.229306 CAGCTGGACTTTTTATTATGATAGGCA 59.771 37.037 5.57 0.00 0.00 4.75
66 67 7.446625 AGCTGGACTTTTTATTATGATAGGCAG 59.553 37.037 0.00 0.00 0.00 4.85
67 68 7.229506 GCTGGACTTTTTATTATGATAGGCAGT 59.770 37.037 0.00 0.00 0.00 4.40
68 69 8.450578 TGGACTTTTTATTATGATAGGCAGTG 57.549 34.615 0.00 0.00 0.00 3.66
69 70 8.271458 TGGACTTTTTATTATGATAGGCAGTGA 58.729 33.333 0.00 0.00 0.00 3.41
70 71 8.778358 GGACTTTTTATTATGATAGGCAGTGAG 58.222 37.037 0.00 0.00 0.00 3.51
71 72 8.159344 ACTTTTTATTATGATAGGCAGTGAGC 57.841 34.615 0.00 0.00 44.65 4.26
84 85 4.526970 GCAGTGAGCAGTATGTACATTG 57.473 45.455 14.77 8.43 44.79 2.82
85 86 4.183865 GCAGTGAGCAGTATGTACATTGA 58.816 43.478 14.77 0.00 44.79 2.57
86 87 4.033358 GCAGTGAGCAGTATGTACATTGAC 59.967 45.833 14.77 7.18 44.79 3.18
87 88 4.568359 CAGTGAGCAGTATGTACATTGACC 59.432 45.833 14.77 3.62 39.31 4.02
88 89 4.222810 AGTGAGCAGTATGTACATTGACCA 59.777 41.667 14.77 6.03 39.31 4.02
89 90 5.104776 AGTGAGCAGTATGTACATTGACCAT 60.105 40.000 14.77 0.00 39.31 3.55
90 91 5.007039 GTGAGCAGTATGTACATTGACCATG 59.993 44.000 14.77 3.94 39.31 3.66
91 92 4.454678 AGCAGTATGTACATTGACCATGG 58.545 43.478 14.77 11.19 39.31 3.66
92 93 4.164030 AGCAGTATGTACATTGACCATGGA 59.836 41.667 21.47 0.00 39.31 3.41
93 94 4.512944 GCAGTATGTACATTGACCATGGAG 59.487 45.833 21.47 5.08 39.31 3.86
94 95 5.059161 CAGTATGTACATTGACCATGGAGG 58.941 45.833 21.47 0.00 45.67 4.30
148 149 5.988310 AAAAAGGGGGTATAAAAAGGACG 57.012 39.130 0.00 0.00 0.00 4.79
149 150 3.657398 AAGGGGGTATAAAAAGGACGG 57.343 47.619 0.00 0.00 0.00 4.79
150 151 2.849537 AGGGGGTATAAAAAGGACGGA 58.150 47.619 0.00 0.00 0.00 4.69
151 152 3.192108 AGGGGGTATAAAAAGGACGGAA 58.808 45.455 0.00 0.00 0.00 4.30
152 153 3.592877 AGGGGGTATAAAAAGGACGGAAA 59.407 43.478 0.00 0.00 0.00 3.13
153 154 4.044444 AGGGGGTATAAAAAGGACGGAAAA 59.956 41.667 0.00 0.00 0.00 2.29
154 155 4.771577 GGGGGTATAAAAAGGACGGAAAAA 59.228 41.667 0.00 0.00 0.00 1.94
155 156 5.422970 GGGGGTATAAAAAGGACGGAAAAAT 59.577 40.000 0.00 0.00 0.00 1.82
156 157 6.406177 GGGGGTATAAAAAGGACGGAAAAATC 60.406 42.308 0.00 0.00 0.00 2.17
157 158 6.379133 GGGGTATAAAAAGGACGGAAAAATCT 59.621 38.462 0.00 0.00 0.00 2.40
158 159 7.415989 GGGGTATAAAAAGGACGGAAAAATCTC 60.416 40.741 0.00 0.00 0.00 2.75
159 160 7.338703 GGGTATAAAAAGGACGGAAAAATCTCT 59.661 37.037 0.00 0.00 0.00 3.10
160 161 8.396390 GGTATAAAAAGGACGGAAAAATCTCTC 58.604 37.037 0.00 0.00 0.00 3.20
161 162 7.996098 ATAAAAAGGACGGAAAAATCTCTCA 57.004 32.000 0.00 0.00 0.00 3.27
162 163 5.948992 AAAAGGACGGAAAAATCTCTCAG 57.051 39.130 0.00 0.00 0.00 3.35
163 164 2.979240 AGGACGGAAAAATCTCTCAGC 58.021 47.619 0.00 0.00 0.00 4.26
164 165 2.010497 GGACGGAAAAATCTCTCAGCC 58.990 52.381 0.00 0.00 0.00 4.85
165 166 2.355209 GGACGGAAAAATCTCTCAGCCT 60.355 50.000 0.00 0.00 0.00 4.58
166 167 2.675348 GACGGAAAAATCTCTCAGCCTG 59.325 50.000 0.00 0.00 0.00 4.85
167 168 2.012673 CGGAAAAATCTCTCAGCCTGG 58.987 52.381 0.00 0.00 0.00 4.45
168 169 2.373224 GGAAAAATCTCTCAGCCTGGG 58.627 52.381 0.00 0.00 0.00 4.45
169 170 2.291217 GGAAAAATCTCTCAGCCTGGGT 60.291 50.000 0.00 0.00 0.00 4.51
170 171 2.797177 AAAATCTCTCAGCCTGGGTC 57.203 50.000 0.00 0.00 0.00 4.46
171 172 0.915364 AAATCTCTCAGCCTGGGTCC 59.085 55.000 0.00 0.00 0.00 4.46
172 173 0.985490 AATCTCTCAGCCTGGGTCCC 60.985 60.000 0.00 0.00 0.00 4.46
173 174 2.905676 ATCTCTCAGCCTGGGTCCCC 62.906 65.000 5.13 0.00 0.00 4.81
176 177 4.649705 TCAGCCTGGGTCCCCGAA 62.650 66.667 5.13 0.00 39.42 4.30
177 178 4.101448 CAGCCTGGGTCCCCGAAG 62.101 72.222 5.13 0.00 39.42 3.79
190 191 2.480555 CGAAGGGCGACAACATGC 59.519 61.111 0.00 0.00 44.57 4.06
191 192 2.324330 CGAAGGGCGACAACATGCA 61.324 57.895 0.00 0.00 44.57 3.96
192 193 1.503542 GAAGGGCGACAACATGCAG 59.496 57.895 0.00 0.00 0.00 4.41
193 194 1.228245 AAGGGCGACAACATGCAGT 60.228 52.632 0.00 0.00 0.00 4.40
194 195 0.823356 AAGGGCGACAACATGCAGTT 60.823 50.000 0.00 0.00 42.42 3.16
195 196 1.210155 GGGCGACAACATGCAGTTC 59.790 57.895 0.00 0.00 38.74 3.01
196 197 1.154413 GGCGACAACATGCAGTTCG 60.154 57.895 0.00 0.00 38.74 3.95
197 198 1.793613 GCGACAACATGCAGTTCGC 60.794 57.895 13.59 13.59 43.19 4.70
221 222 4.837093 CCCCCAGTCTCTACATTTACAA 57.163 45.455 0.00 0.00 0.00 2.41
222 223 5.174037 CCCCCAGTCTCTACATTTACAAA 57.826 43.478 0.00 0.00 0.00 2.83
223 224 5.755849 CCCCCAGTCTCTACATTTACAAAT 58.244 41.667 0.00 0.00 0.00 2.32
224 225 5.823045 CCCCCAGTCTCTACATTTACAAATC 59.177 44.000 0.00 0.00 0.00 2.17
225 226 6.353082 CCCCCAGTCTCTACATTTACAAATCT 60.353 42.308 0.00 0.00 0.00 2.40
226 227 6.763610 CCCCAGTCTCTACATTTACAAATCTC 59.236 42.308 0.00 0.00 0.00 2.75
227 228 6.763610 CCCAGTCTCTACATTTACAAATCTCC 59.236 42.308 0.00 0.00 0.00 3.71
228 229 7.365117 CCCAGTCTCTACATTTACAAATCTCCT 60.365 40.741 0.00 0.00 0.00 3.69
229 230 7.708752 CCAGTCTCTACATTTACAAATCTCCTC 59.291 40.741 0.00 0.00 0.00 3.71
230 231 7.433719 CAGTCTCTACATTTACAAATCTCCTCG 59.566 40.741 0.00 0.00 0.00 4.63
231 232 6.697892 GTCTCTACATTTACAAATCTCCTCGG 59.302 42.308 0.00 0.00 0.00 4.63
232 233 6.605995 TCTCTACATTTACAAATCTCCTCGGA 59.394 38.462 0.00 0.00 0.00 4.55
233 234 7.287927 TCTCTACATTTACAAATCTCCTCGGAT 59.712 37.037 0.00 0.00 0.00 4.18
234 235 7.434492 TCTACATTTACAAATCTCCTCGGATC 58.566 38.462 0.00 0.00 0.00 3.36
235 236 6.240549 ACATTTACAAATCTCCTCGGATCT 57.759 37.500 0.00 0.00 0.00 2.75
236 237 6.284459 ACATTTACAAATCTCCTCGGATCTC 58.716 40.000 0.00 0.00 0.00 2.75
237 238 4.939052 TTACAAATCTCCTCGGATCTCC 57.061 45.455 0.00 0.00 0.00 3.71
238 239 3.039252 ACAAATCTCCTCGGATCTCCT 57.961 47.619 0.00 0.00 0.00 3.69
239 240 2.697751 ACAAATCTCCTCGGATCTCCTG 59.302 50.000 0.00 0.00 0.00 3.86
240 241 2.697751 CAAATCTCCTCGGATCTCCTGT 59.302 50.000 0.00 0.00 0.00 4.00
241 242 3.885976 AATCTCCTCGGATCTCCTGTA 57.114 47.619 0.00 0.00 0.00 2.74
242 243 2.940994 TCTCCTCGGATCTCCTGTAG 57.059 55.000 0.00 0.00 0.00 2.74
243 244 2.128535 TCTCCTCGGATCTCCTGTAGT 58.871 52.381 0.00 0.00 0.00 2.73
244 245 2.158740 TCTCCTCGGATCTCCTGTAGTG 60.159 54.545 0.00 0.00 0.00 2.74
245 246 1.564818 TCCTCGGATCTCCTGTAGTGT 59.435 52.381 0.00 0.00 0.00 3.55
246 247 1.678627 CCTCGGATCTCCTGTAGTGTG 59.321 57.143 0.00 0.00 0.00 3.82
247 248 1.678627 CTCGGATCTCCTGTAGTGTGG 59.321 57.143 0.00 0.00 0.00 4.17
248 249 1.005569 TCGGATCTCCTGTAGTGTGGT 59.994 52.381 0.00 0.00 0.00 4.16
249 250 1.825474 CGGATCTCCTGTAGTGTGGTT 59.175 52.381 0.00 0.00 0.00 3.67
250 251 2.417379 CGGATCTCCTGTAGTGTGGTTG 60.417 54.545 0.00 0.00 0.00 3.77
251 252 2.622436 GATCTCCTGTAGTGTGGTTGC 58.378 52.381 0.00 0.00 0.00 4.17
252 253 0.685097 TCTCCTGTAGTGTGGTTGCC 59.315 55.000 0.00 0.00 0.00 4.52
253 254 0.670546 CTCCTGTAGTGTGGTTGCCG 60.671 60.000 0.00 0.00 0.00 5.69
254 255 2.325082 CCTGTAGTGTGGTTGCCGC 61.325 63.158 0.00 0.00 34.12 6.53
255 256 2.281208 TGTAGTGTGGTTGCCGCC 60.281 61.111 0.00 0.00 32.22 6.13
256 257 2.281208 GTAGTGTGGTTGCCGCCA 60.281 61.111 0.00 0.00 35.93 5.69
262 263 4.502187 TGGTTGCCGCCACATAAA 57.498 50.000 0.00 0.00 32.81 1.40
263 264 2.968737 TGGTTGCCGCCACATAAAT 58.031 47.368 0.00 0.00 32.81 1.40
264 265 1.261480 TGGTTGCCGCCACATAAATT 58.739 45.000 0.00 0.00 32.81 1.82
265 266 1.620819 TGGTTGCCGCCACATAAATTT 59.379 42.857 0.00 0.00 32.81 1.82
266 267 2.037772 TGGTTGCCGCCACATAAATTTT 59.962 40.909 0.00 0.00 32.81 1.82
267 268 2.414825 GGTTGCCGCCACATAAATTTTG 59.585 45.455 0.00 0.00 0.00 2.44
268 269 3.063485 GTTGCCGCCACATAAATTTTGT 58.937 40.909 0.00 0.00 0.00 2.83
269 270 3.393089 TGCCGCCACATAAATTTTGTT 57.607 38.095 0.00 0.00 0.00 2.83
270 271 3.062763 TGCCGCCACATAAATTTTGTTG 58.937 40.909 0.00 0.00 0.00 3.33
271 272 3.063485 GCCGCCACATAAATTTTGTTGT 58.937 40.909 0.00 0.00 0.00 3.32
272 273 3.496507 GCCGCCACATAAATTTTGTTGTT 59.503 39.130 0.00 0.00 0.00 2.83
273 274 4.686554 GCCGCCACATAAATTTTGTTGTTA 59.313 37.500 0.00 0.00 0.00 2.41
274 275 5.177696 GCCGCCACATAAATTTTGTTGTTAA 59.822 36.000 0.00 0.00 0.00 2.01
275 276 6.292919 GCCGCCACATAAATTTTGTTGTTAAA 60.293 34.615 0.00 0.00 0.00 1.52
276 277 7.287229 CCGCCACATAAATTTTGTTGTTAAAG 58.713 34.615 0.00 0.00 0.00 1.85
277 278 7.169982 CCGCCACATAAATTTTGTTGTTAAAGA 59.830 33.333 0.00 0.00 0.00 2.52
278 279 8.707839 CGCCACATAAATTTTGTTGTTAAAGAT 58.292 29.630 0.00 0.00 0.00 2.40
290 291 7.962934 TGTTGTTAAAGATTCTGTTGTTTCG 57.037 32.000 0.00 0.00 0.00 3.46
291 292 7.531716 TGTTGTTAAAGATTCTGTTGTTTCGT 58.468 30.769 0.00 0.00 0.00 3.85
292 293 8.024285 TGTTGTTAAAGATTCTGTTGTTTCGTT 58.976 29.630 0.00 0.00 0.00 3.85
293 294 8.521059 GTTGTTAAAGATTCTGTTGTTTCGTTC 58.479 33.333 0.00 0.00 0.00 3.95
294 295 7.190871 TGTTAAAGATTCTGTTGTTTCGTTCC 58.809 34.615 0.00 0.00 0.00 3.62
295 296 5.828299 AAAGATTCTGTTGTTTCGTTCCA 57.172 34.783 0.00 0.00 0.00 3.53
296 297 5.424121 AAGATTCTGTTGTTTCGTTCCAG 57.576 39.130 0.00 0.00 0.00 3.86
297 298 3.251004 AGATTCTGTTGTTTCGTTCCAGC 59.749 43.478 0.00 0.00 0.00 4.85
298 299 1.305201 TCTGTTGTTTCGTTCCAGCC 58.695 50.000 0.00 0.00 0.00 4.85
299 300 1.021202 CTGTTGTTTCGTTCCAGCCA 58.979 50.000 0.00 0.00 0.00 4.75
300 301 1.608590 CTGTTGTTTCGTTCCAGCCAT 59.391 47.619 0.00 0.00 0.00 4.40
301 302 2.811431 CTGTTGTTTCGTTCCAGCCATA 59.189 45.455 0.00 0.00 0.00 2.74
302 303 3.417101 TGTTGTTTCGTTCCAGCCATAT 58.583 40.909 0.00 0.00 0.00 1.78
303 304 3.438781 TGTTGTTTCGTTCCAGCCATATC 59.561 43.478 0.00 0.00 0.00 1.63
304 305 2.639065 TGTTTCGTTCCAGCCATATCC 58.361 47.619 0.00 0.00 0.00 2.59
305 306 2.238646 TGTTTCGTTCCAGCCATATCCT 59.761 45.455 0.00 0.00 0.00 3.24
306 307 2.872858 GTTTCGTTCCAGCCATATCCTC 59.127 50.000 0.00 0.00 0.00 3.71
307 308 1.048601 TCGTTCCAGCCATATCCTCC 58.951 55.000 0.00 0.00 0.00 4.30
308 309 0.319900 CGTTCCAGCCATATCCTCCG 60.320 60.000 0.00 0.00 0.00 4.63
309 310 0.759346 GTTCCAGCCATATCCTCCGT 59.241 55.000 0.00 0.00 0.00 4.69
310 311 0.758734 TTCCAGCCATATCCTCCGTG 59.241 55.000 0.00 0.00 0.00 4.94
311 312 0.105709 TCCAGCCATATCCTCCGTGA 60.106 55.000 0.00 0.00 0.00 4.35
312 313 0.979665 CCAGCCATATCCTCCGTGAT 59.020 55.000 0.00 0.00 0.00 3.06
313 314 2.179427 CCAGCCATATCCTCCGTGATA 58.821 52.381 0.00 0.00 0.00 2.15
314 315 2.093973 CCAGCCATATCCTCCGTGATAC 60.094 54.545 0.00 0.00 30.36 2.24
315 316 2.093973 CAGCCATATCCTCCGTGATACC 60.094 54.545 0.00 0.00 30.36 2.73
316 317 1.899814 GCCATATCCTCCGTGATACCA 59.100 52.381 0.00 0.00 30.36 3.25
317 318 2.093973 GCCATATCCTCCGTGATACCAG 60.094 54.545 0.00 0.00 30.36 4.00
318 319 3.165875 CCATATCCTCCGTGATACCAGT 58.834 50.000 0.00 0.00 30.36 4.00
319 320 4.341487 CCATATCCTCCGTGATACCAGTA 58.659 47.826 0.00 0.00 30.36 2.74
320 321 4.956700 CCATATCCTCCGTGATACCAGTAT 59.043 45.833 0.00 0.00 30.36 2.12
321 322 5.067936 CCATATCCTCCGTGATACCAGTATC 59.932 48.000 10.30 10.30 41.67 2.24
322 323 3.588210 TCCTCCGTGATACCAGTATCA 57.412 47.619 14.95 14.95 46.81 2.15
330 331 4.607293 TGATACCAGTATCAGCATGGAC 57.393 45.455 14.95 0.00 44.87 4.02
331 332 4.226384 TGATACCAGTATCAGCATGGACT 58.774 43.478 14.95 0.00 44.87 3.85
332 333 4.655649 TGATACCAGTATCAGCATGGACTT 59.344 41.667 14.95 0.00 44.87 3.01
333 334 3.272574 ACCAGTATCAGCATGGACTTG 57.727 47.619 0.00 0.00 37.54 3.16
334 335 2.840038 ACCAGTATCAGCATGGACTTGA 59.160 45.455 0.00 0.00 37.54 3.02
335 336 3.457380 ACCAGTATCAGCATGGACTTGAT 59.543 43.478 0.00 0.00 37.54 2.57
336 337 4.080129 ACCAGTATCAGCATGGACTTGATT 60.080 41.667 0.00 0.00 37.54 2.57
337 338 4.885907 CCAGTATCAGCATGGACTTGATTT 59.114 41.667 0.00 0.00 36.09 2.17
338 339 5.008415 CCAGTATCAGCATGGACTTGATTTC 59.992 44.000 0.00 0.00 36.09 2.17
339 340 5.008415 CAGTATCAGCATGGACTTGATTTCC 59.992 44.000 0.00 0.00 36.16 3.13
340 341 3.726557 TCAGCATGGACTTGATTTCCT 57.273 42.857 0.00 0.00 36.16 3.36
341 342 4.038271 TCAGCATGGACTTGATTTCCTT 57.962 40.909 0.00 0.00 36.16 3.36
342 343 4.012374 TCAGCATGGACTTGATTTCCTTC 58.988 43.478 0.00 0.00 36.16 3.46
343 344 3.012518 AGCATGGACTTGATTTCCTTCG 58.987 45.455 0.00 0.00 33.84 3.79
344 345 2.749621 GCATGGACTTGATTTCCTTCGT 59.250 45.455 0.00 0.00 33.84 3.85
345 346 3.426695 GCATGGACTTGATTTCCTTCGTG 60.427 47.826 0.00 0.00 33.84 4.35
346 347 3.485463 TGGACTTGATTTCCTTCGTGT 57.515 42.857 0.00 0.00 33.84 4.49
347 348 3.138304 TGGACTTGATTTCCTTCGTGTG 58.862 45.455 0.00 0.00 33.84 3.82
348 349 3.139077 GGACTTGATTTCCTTCGTGTGT 58.861 45.455 0.00 0.00 0.00 3.72
349 350 3.564225 GGACTTGATTTCCTTCGTGTGTT 59.436 43.478 0.00 0.00 0.00 3.32
350 351 4.319549 GGACTTGATTTCCTTCGTGTGTTC 60.320 45.833 0.00 0.00 0.00 3.18
351 352 4.451900 ACTTGATTTCCTTCGTGTGTTCT 58.548 39.130 0.00 0.00 0.00 3.01
352 353 4.273480 ACTTGATTTCCTTCGTGTGTTCTG 59.727 41.667 0.00 0.00 0.00 3.02
353 354 3.804036 TGATTTCCTTCGTGTGTTCTGT 58.196 40.909 0.00 0.00 0.00 3.41
354 355 3.807622 TGATTTCCTTCGTGTGTTCTGTC 59.192 43.478 0.00 0.00 0.00 3.51
355 356 1.847818 TTCCTTCGTGTGTTCTGTCG 58.152 50.000 0.00 0.00 0.00 4.35
356 357 0.596600 TCCTTCGTGTGTTCTGTCGC 60.597 55.000 0.00 0.00 0.00 5.19
357 358 1.557443 CCTTCGTGTGTTCTGTCGCC 61.557 60.000 0.00 0.00 0.00 5.54
358 359 1.876453 CTTCGTGTGTTCTGTCGCCG 61.876 60.000 0.00 0.00 0.00 6.46
359 360 4.059459 CGTGTGTTCTGTCGCCGC 62.059 66.667 0.00 0.00 0.00 6.53
360 361 3.712881 GTGTGTTCTGTCGCCGCC 61.713 66.667 0.00 0.00 0.00 6.13
361 362 3.923864 TGTGTTCTGTCGCCGCCT 61.924 61.111 0.00 0.00 0.00 5.52
362 363 2.665185 GTGTTCTGTCGCCGCCTT 60.665 61.111 0.00 0.00 0.00 4.35
363 364 2.664851 TGTTCTGTCGCCGCCTTG 60.665 61.111 0.00 0.00 0.00 3.61
364 365 3.423154 GTTCTGTCGCCGCCTTGG 61.423 66.667 0.00 0.00 42.50 3.61
365 366 3.621805 TTCTGTCGCCGCCTTGGA 61.622 61.111 0.00 0.00 42.00 3.53
366 367 2.954684 TTCTGTCGCCGCCTTGGAT 61.955 57.895 0.00 0.00 42.00 3.41
367 368 1.609635 TTCTGTCGCCGCCTTGGATA 61.610 55.000 0.00 0.00 42.00 2.59
368 369 1.883084 CTGTCGCCGCCTTGGATAC 60.883 63.158 0.00 0.00 42.00 2.24
387 388 6.862209 GGATACAATTGATATCGAGAGCTCT 58.138 40.000 18.28 18.28 30.94 4.09
388 389 7.319646 GGATACAATTGATATCGAGAGCTCTT 58.680 38.462 19.36 4.45 30.94 2.85
389 390 7.816995 GGATACAATTGATATCGAGAGCTCTTT 59.183 37.037 19.36 8.76 30.94 2.52
390 391 9.847706 GATACAATTGATATCGAGAGCTCTTTA 57.152 33.333 19.36 9.62 0.00 1.85
393 394 9.553064 ACAATTGATATCGAGAGCTCTTTATTT 57.447 29.630 19.36 9.51 0.00 1.40
395 396 9.770097 AATTGATATCGAGAGCTCTTTATTTCA 57.230 29.630 19.36 19.33 0.00 2.69
396 397 9.770097 ATTGATATCGAGAGCTCTTTATTTCAA 57.230 29.630 27.47 27.47 30.88 2.69
397 398 9.770097 TTGATATCGAGAGCTCTTTATTTCAAT 57.230 29.630 24.73 12.65 0.00 2.57
398 399 9.201127 TGATATCGAGAGCTCTTTATTTCAATG 57.799 33.333 19.36 0.00 0.00 2.82
399 400 9.416794 GATATCGAGAGCTCTTTATTTCAATGA 57.583 33.333 19.36 4.03 0.00 2.57
400 401 7.712264 ATCGAGAGCTCTTTATTTCAATGAG 57.288 36.000 19.36 0.00 0.00 2.90
401 402 6.867550 TCGAGAGCTCTTTATTTCAATGAGA 58.132 36.000 19.36 0.00 0.00 3.27
402 403 7.323420 TCGAGAGCTCTTTATTTCAATGAGAA 58.677 34.615 19.36 0.00 0.00 2.87
403 404 7.276658 TCGAGAGCTCTTTATTTCAATGAGAAC 59.723 37.037 19.36 0.00 35.56 3.01
404 405 7.277539 CGAGAGCTCTTTATTTCAATGAGAACT 59.722 37.037 19.36 0.00 35.56 3.01
405 406 8.266392 AGAGCTCTTTATTTCAATGAGAACTG 57.734 34.615 11.45 0.00 35.56 3.16
406 407 8.099537 AGAGCTCTTTATTTCAATGAGAACTGA 58.900 33.333 11.45 0.00 35.56 3.41
407 408 8.804912 AGCTCTTTATTTCAATGAGAACTGAT 57.195 30.769 4.59 0.00 35.56 2.90
408 409 9.240734 AGCTCTTTATTTCAATGAGAACTGATT 57.759 29.630 4.59 0.00 35.56 2.57
409 410 9.286946 GCTCTTTATTTCAATGAGAACTGATTG 57.713 33.333 7.48 7.48 35.56 2.67
417 418 9.897744 TTTCAATGAGAACTGATTGTATGAAAC 57.102 29.630 12.12 0.00 35.56 2.78
418 419 8.620116 TCAATGAGAACTGATTGTATGAAACA 57.380 30.769 12.12 0.00 35.88 2.83
419 420 9.234827 TCAATGAGAACTGATTGTATGAAACAT 57.765 29.630 12.12 0.00 38.10 2.71
420 421 9.285770 CAATGAGAACTGATTGTATGAAACATG 57.714 33.333 5.98 0.00 38.10 3.21
421 422 8.797350 ATGAGAACTGATTGTATGAAACATGA 57.203 30.769 0.00 0.00 38.10 3.07
422 423 8.620116 TGAGAACTGATTGTATGAAACATGAA 57.380 30.769 0.00 0.00 38.10 2.57
423 424 9.234827 TGAGAACTGATTGTATGAAACATGAAT 57.765 29.630 0.00 0.00 38.10 2.57
529 530 9.927081 ATAATAGAATGGAAATTCTTGAGGTGT 57.073 29.630 6.30 0.00 40.91 4.16
530 531 7.872113 ATAGAATGGAAATTCTTGAGGTGTC 57.128 36.000 6.30 0.00 40.91 3.67
531 532 5.885465 AGAATGGAAATTCTTGAGGTGTCT 58.115 37.500 0.00 0.00 37.61 3.41
532 533 6.310149 AGAATGGAAATTCTTGAGGTGTCTT 58.690 36.000 0.00 0.00 37.61 3.01
533 534 6.779539 AGAATGGAAATTCTTGAGGTGTCTTT 59.220 34.615 0.00 0.00 37.61 2.52
534 535 6.983906 ATGGAAATTCTTGAGGTGTCTTTT 57.016 33.333 0.00 0.00 0.00 2.27
535 536 6.790232 TGGAAATTCTTGAGGTGTCTTTTT 57.210 33.333 0.00 0.00 0.00 1.94
536 537 6.805713 TGGAAATTCTTGAGGTGTCTTTTTC 58.194 36.000 0.00 0.00 0.00 2.29
537 538 6.607198 TGGAAATTCTTGAGGTGTCTTTTTCT 59.393 34.615 0.00 0.00 0.00 2.52
538 539 7.124147 TGGAAATTCTTGAGGTGTCTTTTTCTT 59.876 33.333 0.00 0.00 0.00 2.52
539 540 8.630037 GGAAATTCTTGAGGTGTCTTTTTCTTA 58.370 33.333 0.00 0.00 0.00 2.10
541 542 9.971922 AAATTCTTGAGGTGTCTTTTTCTTATG 57.028 29.630 0.00 0.00 0.00 1.90
542 543 6.560253 TCTTGAGGTGTCTTTTTCTTATGC 57.440 37.500 0.00 0.00 0.00 3.14
543 544 6.061441 TCTTGAGGTGTCTTTTTCTTATGCA 58.939 36.000 0.00 0.00 0.00 3.96
544 545 6.716628 TCTTGAGGTGTCTTTTTCTTATGCAT 59.283 34.615 3.79 3.79 0.00 3.96
545 546 6.258230 TGAGGTGTCTTTTTCTTATGCATG 57.742 37.500 10.16 0.00 0.00 4.06
546 547 5.183713 TGAGGTGTCTTTTTCTTATGCATGG 59.816 40.000 10.16 2.09 0.00 3.66
547 548 5.079643 AGGTGTCTTTTTCTTATGCATGGT 58.920 37.500 10.16 0.00 0.00 3.55
548 549 5.183904 AGGTGTCTTTTTCTTATGCATGGTC 59.816 40.000 10.16 0.00 0.00 4.02
549 550 5.088739 GTGTCTTTTTCTTATGCATGGTCG 58.911 41.667 10.16 0.00 0.00 4.79
550 551 4.098416 GTCTTTTTCTTATGCATGGTCGC 58.902 43.478 10.16 0.00 0.00 5.19
552 553 4.217334 TCTTTTTCTTATGCATGGTCGCAA 59.783 37.500 10.16 0.00 46.87 4.85
553 554 3.763097 TTTCTTATGCATGGTCGCAAG 57.237 42.857 10.16 3.76 46.87 4.01
554 555 2.401583 TCTTATGCATGGTCGCAAGT 57.598 45.000 10.16 0.00 46.87 3.16
555 556 2.710377 TCTTATGCATGGTCGCAAGTT 58.290 42.857 10.16 0.00 46.87 2.66
556 557 2.419673 TCTTATGCATGGTCGCAAGTTG 59.580 45.455 10.16 0.00 46.87 3.16
557 558 2.106477 TATGCATGGTCGCAAGTTGA 57.894 45.000 10.16 0.00 46.87 3.18
558 559 0.806868 ATGCATGGTCGCAAGTTGAG 59.193 50.000 7.16 3.09 46.87 3.02
559 560 1.236616 TGCATGGTCGCAAGTTGAGG 61.237 55.000 7.16 0.00 39.45 3.86
560 561 1.237285 GCATGGTCGCAAGTTGAGGT 61.237 55.000 7.16 0.00 39.48 3.85
561 562 0.518636 CATGGTCGCAAGTTGAGGTG 59.481 55.000 7.16 0.00 39.48 4.00
562 563 0.396435 ATGGTCGCAAGTTGAGGTGA 59.604 50.000 7.16 0.00 39.48 4.02
563 564 0.396435 TGGTCGCAAGTTGAGGTGAT 59.604 50.000 7.16 0.00 39.48 3.06
564 565 1.079503 GGTCGCAAGTTGAGGTGATC 58.920 55.000 7.16 0.00 39.48 2.92
565 566 1.608025 GGTCGCAAGTTGAGGTGATCA 60.608 52.381 7.16 0.00 39.48 2.92
566 567 2.350522 GTCGCAAGTTGAGGTGATCAT 58.649 47.619 7.16 0.00 37.89 2.45
567 568 2.744202 GTCGCAAGTTGAGGTGATCATT 59.256 45.455 7.16 0.00 37.89 2.57
568 569 3.189287 GTCGCAAGTTGAGGTGATCATTT 59.811 43.478 7.16 0.00 37.89 2.32
569 570 4.391830 GTCGCAAGTTGAGGTGATCATTTA 59.608 41.667 7.16 0.00 37.89 1.40
570 571 4.391830 TCGCAAGTTGAGGTGATCATTTAC 59.608 41.667 7.16 0.00 37.89 2.01
571 572 4.393062 CGCAAGTTGAGGTGATCATTTACT 59.607 41.667 7.16 0.00 37.89 2.24
572 573 5.446473 CGCAAGTTGAGGTGATCATTTACTC 60.446 44.000 7.16 5.77 37.89 2.59
573 574 5.412594 GCAAGTTGAGGTGATCATTTACTCA 59.587 40.000 7.16 14.43 37.89 3.41
574 575 6.094603 GCAAGTTGAGGTGATCATTTACTCAT 59.905 38.462 17.34 6.59 37.89 2.90
575 576 7.470079 CAAGTTGAGGTGATCATTTACTCATG 58.530 38.462 17.34 11.92 37.89 3.07
576 577 5.587844 AGTTGAGGTGATCATTTACTCATGC 59.412 40.000 17.34 14.28 37.89 4.06
577 578 5.101648 TGAGGTGATCATTTACTCATGCA 57.898 39.130 14.43 0.00 33.62 3.96
578 579 5.687780 TGAGGTGATCATTTACTCATGCAT 58.312 37.500 14.43 0.00 33.62 3.96
579 580 5.529800 TGAGGTGATCATTTACTCATGCATG 59.470 40.000 21.07 21.07 33.62 4.06
580 581 5.443283 AGGTGATCATTTACTCATGCATGT 58.557 37.500 25.43 10.70 0.00 3.21
581 582 5.889853 AGGTGATCATTTACTCATGCATGTT 59.110 36.000 25.43 16.14 0.00 2.71
582 583 5.975344 GGTGATCATTTACTCATGCATGTTG 59.025 40.000 25.43 20.38 0.00 3.33
583 584 6.183360 GGTGATCATTTACTCATGCATGTTGA 60.183 38.462 25.43 18.00 0.00 3.18
584 585 7.252708 GTGATCATTTACTCATGCATGTTGAA 58.747 34.615 25.43 16.33 0.00 2.69
585 586 7.919091 GTGATCATTTACTCATGCATGTTGAAT 59.081 33.333 25.43 17.64 0.00 2.57
586 587 7.918562 TGATCATTTACTCATGCATGTTGAATG 59.081 33.333 25.43 25.50 34.63 2.67
587 588 7.160547 TCATTTACTCATGCATGTTGAATGT 57.839 32.000 27.62 19.94 34.92 2.71
588 589 7.604549 TCATTTACTCATGCATGTTGAATGTT 58.395 30.769 27.62 13.32 34.92 2.71
589 590 7.542824 TCATTTACTCATGCATGTTGAATGTTG 59.457 33.333 27.62 18.50 34.92 3.33
590 591 6.572167 TTACTCATGCATGTTGAATGTTGA 57.428 33.333 25.43 2.85 34.92 3.18
591 592 5.055642 ACTCATGCATGTTGAATGTTGAG 57.944 39.130 25.43 14.74 34.92 3.02
592 593 4.082408 ACTCATGCATGTTGAATGTTGAGG 60.082 41.667 25.43 0.00 34.92 3.86
593 594 3.827876 TCATGCATGTTGAATGTTGAGGT 59.172 39.130 25.43 0.00 34.92 3.85
594 595 3.646611 TGCATGTTGAATGTTGAGGTG 57.353 42.857 0.00 0.00 0.00 4.00
595 596 3.220940 TGCATGTTGAATGTTGAGGTGA 58.779 40.909 0.00 0.00 0.00 4.02
596 597 3.004629 TGCATGTTGAATGTTGAGGTGAC 59.995 43.478 0.00 0.00 0.00 3.67
597 598 3.004629 GCATGTTGAATGTTGAGGTGACA 59.995 43.478 0.00 0.00 0.00 3.58
598 599 4.321452 GCATGTTGAATGTTGAGGTGACAT 60.321 41.667 0.00 0.00 39.31 3.06
599 600 4.834357 TGTTGAATGTTGAGGTGACATG 57.166 40.909 0.00 0.00 37.76 3.21
600 601 3.004629 TGTTGAATGTTGAGGTGACATGC 59.995 43.478 0.00 0.00 37.76 4.06
601 602 3.144657 TGAATGTTGAGGTGACATGCT 57.855 42.857 0.00 0.00 37.76 3.79
602 603 3.489355 TGAATGTTGAGGTGACATGCTT 58.511 40.909 0.00 0.00 37.76 3.91
603 604 3.253921 TGAATGTTGAGGTGACATGCTTG 59.746 43.478 0.00 0.00 37.76 4.01
604 605 0.953727 TGTTGAGGTGACATGCTTGC 59.046 50.000 0.00 0.00 0.00 4.01
605 606 0.953727 GTTGAGGTGACATGCTTGCA 59.046 50.000 0.00 0.00 0.00 4.08
606 607 1.542915 GTTGAGGTGACATGCTTGCAT 59.457 47.619 1.81 1.81 0.00 3.96
607 608 1.170442 TGAGGTGACATGCTTGCATG 58.830 50.000 27.64 27.64 38.46 4.06
609 610 1.542915 GAGGTGACATGCTTGCATGTT 59.457 47.619 32.76 21.55 44.88 2.71
610 611 1.271379 AGGTGACATGCTTGCATGTTG 59.729 47.619 32.76 15.73 44.88 3.33
611 612 1.270274 GGTGACATGCTTGCATGTTGA 59.730 47.619 32.76 22.83 44.88 3.18
612 613 2.592194 GTGACATGCTTGCATGTTGAG 58.408 47.619 32.76 13.66 44.88 3.02
613 614 2.227149 GTGACATGCTTGCATGTTGAGA 59.773 45.455 32.76 18.95 44.88 3.27
614 615 2.885894 TGACATGCTTGCATGTTGAGAA 59.114 40.909 32.76 18.20 44.88 2.87
621 622 6.954616 TGCTTGCATGTTGAGAAAAATATG 57.045 33.333 1.14 0.00 33.25 1.78
627 628 7.890515 TGCATGTTGAGAAAAATATGGTGTTA 58.109 30.769 0.00 0.00 31.41 2.41
630 631 9.304731 CATGTTGAGAAAAATATGGTGTTATGG 57.695 33.333 0.00 0.00 0.00 2.74
631 632 7.835822 TGTTGAGAAAAATATGGTGTTATGGG 58.164 34.615 0.00 0.00 0.00 4.00
693 695 2.915659 TGGAGCGGTCGTCTTGGT 60.916 61.111 8.77 0.00 0.00 3.67
764 766 0.874175 GCGTATACAGATGTGCCGCA 60.874 55.000 15.87 0.00 38.57 5.69
847 861 2.668632 CTACCTGGGCGGCTTTGA 59.331 61.111 9.56 0.00 35.61 2.69
851 865 1.045911 ACCTGGGCGGCTTTGAAAAA 61.046 50.000 9.56 0.00 35.61 1.94
861 875 2.301583 GGCTTTGAAAAATGGCCCACTA 59.698 45.455 0.00 0.00 37.12 2.74
1296 1338 1.286260 GACGCTGACGAGGTCTTGT 59.714 57.895 0.00 0.00 43.93 3.16
1358 1400 2.354773 GAAGGGCGCGAGGATACG 60.355 66.667 12.10 0.00 46.39 3.06
1462 1504 0.250467 ACAGAAGTTGCATCTGGCGT 60.250 50.000 17.75 4.56 46.81 5.68
1794 2334 2.351418 TGCTATGTTCGATTTCAAGCCG 59.649 45.455 0.00 0.00 0.00 5.52
2090 2957 2.373707 GGCTGATGTGAGGGAGCCT 61.374 63.158 0.00 0.00 46.40 4.58
2532 3661 3.871594 GGTATGTATGTGAGCACAAGTCC 59.128 47.826 7.46 2.10 45.41 3.85
2738 3870 5.613329 ACGGTCCTTAAAAACACTATGTGA 58.387 37.500 4.61 0.00 36.96 3.58
2947 4116 8.638873 TGACATTTGATACGACCTATAAGACAT 58.361 33.333 0.00 0.00 0.00 3.06
2948 4117 9.477484 GACATTTGATACGACCTATAAGACATT 57.523 33.333 0.00 0.00 0.00 2.71
3148 4647 5.276207 GCCTGCGTAAAAACAGAAAAAGAAC 60.276 40.000 0.00 0.00 35.90 3.01
3283 4802 1.999735 CAATAGTTGACGTGATGCCGT 59.000 47.619 0.00 0.00 45.18 5.68
3457 4978 4.144297 GCATGTTGGAGAAATATGGGCTA 58.856 43.478 0.00 0.00 37.73 3.93
3557 5079 2.318578 CGAAAATGACAAGCACGCAAT 58.681 42.857 0.00 0.00 0.00 3.56
3840 5391 0.179111 CATGCGTCGGAGGTGTACAT 60.179 55.000 0.00 0.00 0.00 2.29
4032 5583 0.104304 AAGTGTGAGTGTGGGACGTC 59.896 55.000 7.13 7.13 0.00 4.34
4180 5733 5.353394 AAAGCACCGGAATAATGACTCTA 57.647 39.130 9.46 0.00 0.00 2.43
4202 5755 7.678837 TCTATTTTTCATGGATGCTGGTTTTT 58.321 30.769 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 6.208599 CAGCTGTTATTGGTCTCCCTTAAAAA 59.791 38.462 5.25 0.00 0.00 1.94
20 21 5.710099 CAGCTGTTATTGGTCTCCCTTAAAA 59.290 40.000 5.25 0.00 0.00 1.52
21 22 5.253330 CAGCTGTTATTGGTCTCCCTTAAA 58.747 41.667 5.25 0.00 0.00 1.52
22 23 4.324254 CCAGCTGTTATTGGTCTCCCTTAA 60.324 45.833 13.81 0.00 0.00 1.85
23 24 3.199946 CCAGCTGTTATTGGTCTCCCTTA 59.800 47.826 13.81 0.00 0.00 2.69
24 25 2.025887 CCAGCTGTTATTGGTCTCCCTT 60.026 50.000 13.81 0.00 0.00 3.95
25 26 1.561542 CCAGCTGTTATTGGTCTCCCT 59.438 52.381 13.81 0.00 0.00 4.20
26 27 1.559682 TCCAGCTGTTATTGGTCTCCC 59.440 52.381 13.81 0.00 35.89 4.30
27 28 2.237392 AGTCCAGCTGTTATTGGTCTCC 59.763 50.000 13.81 0.00 35.89 3.71
28 29 3.618690 AGTCCAGCTGTTATTGGTCTC 57.381 47.619 13.81 0.00 35.89 3.36
29 30 4.373156 AAAGTCCAGCTGTTATTGGTCT 57.627 40.909 13.81 0.00 34.92 3.85
30 31 5.453567 AAAAAGTCCAGCTGTTATTGGTC 57.546 39.130 13.81 0.00 35.89 4.02
31 32 7.539034 AATAAAAAGTCCAGCTGTTATTGGT 57.461 32.000 13.81 0.00 35.89 3.67
32 33 9.520204 CATAATAAAAAGTCCAGCTGTTATTGG 57.480 33.333 19.97 12.35 33.67 3.16
37 38 9.125026 CCTATCATAATAAAAAGTCCAGCTGTT 57.875 33.333 13.81 1.32 0.00 3.16
38 39 7.229506 GCCTATCATAATAAAAAGTCCAGCTGT 59.770 37.037 13.81 0.00 0.00 4.40
39 40 7.229306 TGCCTATCATAATAAAAAGTCCAGCTG 59.771 37.037 6.78 6.78 0.00 4.24
40 41 7.290061 TGCCTATCATAATAAAAAGTCCAGCT 58.710 34.615 0.00 0.00 0.00 4.24
41 42 7.229506 ACTGCCTATCATAATAAAAAGTCCAGC 59.770 37.037 0.00 0.00 0.00 4.85
42 43 8.562892 CACTGCCTATCATAATAAAAAGTCCAG 58.437 37.037 0.00 0.00 0.00 3.86
43 44 8.271458 TCACTGCCTATCATAATAAAAAGTCCA 58.729 33.333 0.00 0.00 0.00 4.02
44 45 8.677148 TCACTGCCTATCATAATAAAAAGTCC 57.323 34.615 0.00 0.00 0.00 3.85
45 46 8.286097 GCTCACTGCCTATCATAATAAAAAGTC 58.714 37.037 0.00 0.00 35.15 3.01
46 47 7.775093 TGCTCACTGCCTATCATAATAAAAAGT 59.225 33.333 0.00 0.00 42.00 2.66
47 48 8.158169 TGCTCACTGCCTATCATAATAAAAAG 57.842 34.615 0.00 0.00 42.00 2.27
48 49 7.775093 ACTGCTCACTGCCTATCATAATAAAAA 59.225 33.333 0.00 0.00 42.00 1.94
49 50 7.282585 ACTGCTCACTGCCTATCATAATAAAA 58.717 34.615 0.00 0.00 42.00 1.52
50 51 6.830912 ACTGCTCACTGCCTATCATAATAAA 58.169 36.000 0.00 0.00 42.00 1.40
51 52 6.425210 ACTGCTCACTGCCTATCATAATAA 57.575 37.500 0.00 0.00 42.00 1.40
52 53 7.179160 ACATACTGCTCACTGCCTATCATAATA 59.821 37.037 0.00 0.00 42.00 0.98
53 54 4.970860 ACTGCTCACTGCCTATCATAAT 57.029 40.909 0.00 0.00 42.00 1.28
54 55 5.305386 ACATACTGCTCACTGCCTATCATAA 59.695 40.000 0.00 0.00 42.00 1.90
55 56 4.835056 ACATACTGCTCACTGCCTATCATA 59.165 41.667 0.00 0.00 42.00 2.15
56 57 3.645212 ACATACTGCTCACTGCCTATCAT 59.355 43.478 0.00 0.00 42.00 2.45
57 58 3.033909 ACATACTGCTCACTGCCTATCA 58.966 45.455 0.00 0.00 42.00 2.15
58 59 3.742433 ACATACTGCTCACTGCCTATC 57.258 47.619 0.00 0.00 42.00 2.08
59 60 3.960755 TGTACATACTGCTCACTGCCTAT 59.039 43.478 0.00 0.00 42.00 2.57
60 61 3.361786 TGTACATACTGCTCACTGCCTA 58.638 45.455 0.00 0.00 42.00 3.93
61 62 2.179427 TGTACATACTGCTCACTGCCT 58.821 47.619 0.00 0.00 42.00 4.75
62 63 2.672961 TGTACATACTGCTCACTGCC 57.327 50.000 0.00 0.00 42.00 4.85
63 64 4.033358 GTCAATGTACATACTGCTCACTGC 59.967 45.833 9.21 0.00 43.25 4.40
64 65 4.568359 GGTCAATGTACATACTGCTCACTG 59.432 45.833 9.21 0.32 0.00 3.66
65 66 4.222810 TGGTCAATGTACATACTGCTCACT 59.777 41.667 9.21 0.00 0.00 3.41
66 67 4.503910 TGGTCAATGTACATACTGCTCAC 58.496 43.478 9.21 0.00 0.00 3.51
67 68 4.817318 TGGTCAATGTACATACTGCTCA 57.183 40.909 9.21 4.09 0.00 4.26
68 69 4.512944 CCATGGTCAATGTACATACTGCTC 59.487 45.833 9.21 2.14 34.11 4.26
69 70 4.164030 TCCATGGTCAATGTACATACTGCT 59.836 41.667 12.58 0.00 34.11 4.24
70 71 4.450976 TCCATGGTCAATGTACATACTGC 58.549 43.478 12.58 1.73 34.11 4.40
71 72 5.059161 CCTCCATGGTCAATGTACATACTG 58.941 45.833 12.58 4.94 34.11 2.74
72 73 5.296151 CCTCCATGGTCAATGTACATACT 57.704 43.478 12.58 0.00 34.11 2.12
126 127 4.773674 CCGTCCTTTTTATACCCCCTTTTT 59.226 41.667 0.00 0.00 0.00 1.94
127 128 4.044444 TCCGTCCTTTTTATACCCCCTTTT 59.956 41.667 0.00 0.00 0.00 2.27
128 129 3.592877 TCCGTCCTTTTTATACCCCCTTT 59.407 43.478 0.00 0.00 0.00 3.11
129 130 3.192108 TCCGTCCTTTTTATACCCCCTT 58.808 45.455 0.00 0.00 0.00 3.95
130 131 2.849537 TCCGTCCTTTTTATACCCCCT 58.150 47.619 0.00 0.00 0.00 4.79
131 132 3.650281 TTCCGTCCTTTTTATACCCCC 57.350 47.619 0.00 0.00 0.00 5.40
132 133 5.981088 TTTTTCCGTCCTTTTTATACCCC 57.019 39.130 0.00 0.00 0.00 4.95
133 134 7.338703 AGAGATTTTTCCGTCCTTTTTATACCC 59.661 37.037 0.00 0.00 0.00 3.69
134 135 8.277490 AGAGATTTTTCCGTCCTTTTTATACC 57.723 34.615 0.00 0.00 0.00 2.73
135 136 8.943002 TGAGAGATTTTTCCGTCCTTTTTATAC 58.057 33.333 0.00 0.00 0.00 1.47
136 137 9.162764 CTGAGAGATTTTTCCGTCCTTTTTATA 57.837 33.333 0.00 0.00 0.00 0.98
137 138 7.362142 GCTGAGAGATTTTTCCGTCCTTTTTAT 60.362 37.037 0.00 0.00 0.00 1.40
138 139 6.072673 GCTGAGAGATTTTTCCGTCCTTTTTA 60.073 38.462 0.00 0.00 0.00 1.52
139 140 5.278512 GCTGAGAGATTTTTCCGTCCTTTTT 60.279 40.000 0.00 0.00 0.00 1.94
140 141 4.216472 GCTGAGAGATTTTTCCGTCCTTTT 59.784 41.667 0.00 0.00 0.00 2.27
141 142 3.753797 GCTGAGAGATTTTTCCGTCCTTT 59.246 43.478 0.00 0.00 0.00 3.11
142 143 3.339141 GCTGAGAGATTTTTCCGTCCTT 58.661 45.455 0.00 0.00 0.00 3.36
143 144 2.355209 GGCTGAGAGATTTTTCCGTCCT 60.355 50.000 0.00 0.00 0.00 3.85
144 145 2.010497 GGCTGAGAGATTTTTCCGTCC 58.990 52.381 0.00 0.00 0.00 4.79
145 146 2.675348 CAGGCTGAGAGATTTTTCCGTC 59.325 50.000 9.42 0.00 0.00 4.79
146 147 2.616510 CCAGGCTGAGAGATTTTTCCGT 60.617 50.000 17.94 0.00 0.00 4.69
147 148 2.012673 CCAGGCTGAGAGATTTTTCCG 58.987 52.381 17.94 0.00 0.00 4.30
148 149 2.291217 ACCCAGGCTGAGAGATTTTTCC 60.291 50.000 17.94 0.00 0.00 3.13
149 150 3.013219 GACCCAGGCTGAGAGATTTTTC 58.987 50.000 17.94 0.00 0.00 2.29
150 151 2.291217 GGACCCAGGCTGAGAGATTTTT 60.291 50.000 17.94 0.00 0.00 1.94
151 152 1.283321 GGACCCAGGCTGAGAGATTTT 59.717 52.381 17.94 0.00 0.00 1.82
152 153 0.915364 GGACCCAGGCTGAGAGATTT 59.085 55.000 17.94 0.00 0.00 2.17
153 154 0.985490 GGGACCCAGGCTGAGAGATT 60.985 60.000 17.94 0.00 0.00 2.40
154 155 1.383803 GGGACCCAGGCTGAGAGAT 60.384 63.158 17.94 0.00 0.00 2.75
155 156 2.039624 GGGACCCAGGCTGAGAGA 59.960 66.667 17.94 0.00 0.00 3.10
172 173 3.039202 GCATGTTGTCGCCCTTCGG 62.039 63.158 0.00 0.00 39.05 4.30
173 174 2.244436 CTGCATGTTGTCGCCCTTCG 62.244 60.000 0.00 0.00 40.15 3.79
174 175 1.237285 ACTGCATGTTGTCGCCCTTC 61.237 55.000 0.00 0.00 0.00 3.46
175 176 0.823356 AACTGCATGTTGTCGCCCTT 60.823 50.000 0.00 0.00 37.52 3.95
176 177 1.228245 AACTGCATGTTGTCGCCCT 60.228 52.632 0.00 0.00 37.52 5.19
177 178 1.210155 GAACTGCATGTTGTCGCCC 59.790 57.895 6.31 0.00 39.30 6.13
178 179 1.154413 CGAACTGCATGTTGTCGCC 60.154 57.895 6.31 0.00 39.30 5.54
179 180 1.793613 GCGAACTGCATGTTGTCGC 60.794 57.895 15.65 15.65 45.45 5.19
180 181 4.422506 GCGAACTGCATGTTGTCG 57.577 55.556 6.31 6.26 45.45 4.35
200 201 4.837093 TTGTAAATGTAGAGACTGGGGG 57.163 45.455 0.00 0.00 0.00 5.40
201 202 6.653989 AGATTTGTAAATGTAGAGACTGGGG 58.346 40.000 0.00 0.00 0.00 4.96
202 203 6.763610 GGAGATTTGTAAATGTAGAGACTGGG 59.236 42.308 0.00 0.00 0.00 4.45
203 204 7.560368 AGGAGATTTGTAAATGTAGAGACTGG 58.440 38.462 0.00 0.00 0.00 4.00
204 205 7.433719 CGAGGAGATTTGTAAATGTAGAGACTG 59.566 40.741 0.00 0.00 0.00 3.51
205 206 7.416890 CCGAGGAGATTTGTAAATGTAGAGACT 60.417 40.741 0.00 0.00 0.00 3.24
206 207 6.697892 CCGAGGAGATTTGTAAATGTAGAGAC 59.302 42.308 0.00 0.00 0.00 3.36
207 208 6.605995 TCCGAGGAGATTTGTAAATGTAGAGA 59.394 38.462 0.00 0.00 0.00 3.10
208 209 6.806751 TCCGAGGAGATTTGTAAATGTAGAG 58.193 40.000 0.00 0.00 0.00 2.43
209 210 6.785337 TCCGAGGAGATTTGTAAATGTAGA 57.215 37.500 0.00 0.00 0.00 2.59
210 211 7.437748 AGATCCGAGGAGATTTGTAAATGTAG 58.562 38.462 0.00 0.00 0.00 2.74
211 212 7.361457 AGATCCGAGGAGATTTGTAAATGTA 57.639 36.000 0.00 0.00 0.00 2.29
212 213 6.240549 AGATCCGAGGAGATTTGTAAATGT 57.759 37.500 0.00 0.00 0.00 2.71
213 214 5.698545 GGAGATCCGAGGAGATTTGTAAATG 59.301 44.000 0.00 0.00 0.00 2.32
214 215 5.604650 AGGAGATCCGAGGAGATTTGTAAAT 59.395 40.000 0.00 0.00 42.08 1.40
215 216 4.962995 AGGAGATCCGAGGAGATTTGTAAA 59.037 41.667 0.00 0.00 42.08 2.01
216 217 4.342378 CAGGAGATCCGAGGAGATTTGTAA 59.658 45.833 0.00 0.00 42.08 2.41
217 218 3.891977 CAGGAGATCCGAGGAGATTTGTA 59.108 47.826 0.00 0.00 42.08 2.41
218 219 2.697751 CAGGAGATCCGAGGAGATTTGT 59.302 50.000 0.00 0.00 42.08 2.83
219 220 2.697751 ACAGGAGATCCGAGGAGATTTG 59.302 50.000 0.00 0.00 42.08 2.32
220 221 3.039252 ACAGGAGATCCGAGGAGATTT 57.961 47.619 0.00 0.00 42.08 2.17
221 222 2.765689 ACAGGAGATCCGAGGAGATT 57.234 50.000 0.00 0.00 42.08 2.40
222 223 2.714250 ACTACAGGAGATCCGAGGAGAT 59.286 50.000 11.97 0.00 42.08 2.75
223 224 2.128535 ACTACAGGAGATCCGAGGAGA 58.871 52.381 11.97 0.00 42.08 3.71
224 225 2.226330 CACTACAGGAGATCCGAGGAG 58.774 57.143 0.00 5.39 42.08 3.69
225 226 1.564818 ACACTACAGGAGATCCGAGGA 59.435 52.381 0.00 0.00 42.08 3.71
226 227 1.678627 CACACTACAGGAGATCCGAGG 59.321 57.143 0.00 0.00 42.08 4.63
227 228 1.678627 CCACACTACAGGAGATCCGAG 59.321 57.143 0.00 0.00 42.08 4.63
228 229 1.005569 ACCACACTACAGGAGATCCGA 59.994 52.381 0.00 0.00 42.08 4.55
229 230 1.475403 ACCACACTACAGGAGATCCG 58.525 55.000 0.00 0.00 42.08 4.18
230 231 2.678190 GCAACCACACTACAGGAGATCC 60.678 54.545 0.00 0.00 0.00 3.36
231 232 2.622436 GCAACCACACTACAGGAGATC 58.378 52.381 0.00 0.00 0.00 2.75
232 233 1.279271 GGCAACCACACTACAGGAGAT 59.721 52.381 0.00 0.00 0.00 2.75
233 234 0.685097 GGCAACCACACTACAGGAGA 59.315 55.000 0.00 0.00 0.00 3.71
234 235 0.670546 CGGCAACCACACTACAGGAG 60.671 60.000 0.00 0.00 0.00 3.69
235 236 1.369692 CGGCAACCACACTACAGGA 59.630 57.895 0.00 0.00 0.00 3.86
236 237 2.325082 GCGGCAACCACACTACAGG 61.325 63.158 0.00 0.00 0.00 4.00
237 238 2.325082 GGCGGCAACCACACTACAG 61.325 63.158 3.07 0.00 0.00 2.74
238 239 2.281208 GGCGGCAACCACACTACA 60.281 61.111 3.07 0.00 0.00 2.74
239 240 2.281208 TGGCGGCAACCACACTAC 60.281 61.111 10.22 0.00 33.75 2.73
245 246 1.261480 AATTTATGTGGCGGCAACCA 58.739 45.000 15.50 9.34 37.38 3.67
246 247 2.378445 AAATTTATGTGGCGGCAACC 57.622 45.000 15.50 2.17 0.00 3.77
247 248 3.063485 ACAAAATTTATGTGGCGGCAAC 58.937 40.909 15.50 9.00 0.00 4.17
248 249 3.393089 ACAAAATTTATGTGGCGGCAA 57.607 38.095 15.50 4.59 0.00 4.52
249 250 3.062763 CAACAAAATTTATGTGGCGGCA 58.937 40.909 7.97 7.97 0.00 5.69
250 251 3.063485 ACAACAAAATTTATGTGGCGGC 58.937 40.909 0.00 0.00 0.00 6.53
251 252 6.771188 TTAACAACAAAATTTATGTGGCGG 57.229 33.333 0.00 0.00 0.00 6.13
252 253 8.066668 TCTTTAACAACAAAATTTATGTGGCG 57.933 30.769 0.00 0.00 0.00 5.69
264 265 8.855279 CGAAACAACAGAATCTTTAACAACAAA 58.145 29.630 0.00 0.00 0.00 2.83
265 266 8.024285 ACGAAACAACAGAATCTTTAACAACAA 58.976 29.630 0.00 0.00 0.00 2.83
266 267 7.531716 ACGAAACAACAGAATCTTTAACAACA 58.468 30.769 0.00 0.00 0.00 3.33
267 268 7.964545 ACGAAACAACAGAATCTTTAACAAC 57.035 32.000 0.00 0.00 0.00 3.32
268 269 7.698970 GGAACGAAACAACAGAATCTTTAACAA 59.301 33.333 0.00 0.00 0.00 2.83
269 270 7.148222 TGGAACGAAACAACAGAATCTTTAACA 60.148 33.333 0.00 0.00 0.00 2.41
270 271 7.190871 TGGAACGAAACAACAGAATCTTTAAC 58.809 34.615 0.00 0.00 0.00 2.01
271 272 7.323049 TGGAACGAAACAACAGAATCTTTAA 57.677 32.000 0.00 0.00 0.00 1.52
272 273 6.512741 GCTGGAACGAAACAACAGAATCTTTA 60.513 38.462 0.00 0.00 0.00 1.85
273 274 5.733373 GCTGGAACGAAACAACAGAATCTTT 60.733 40.000 0.00 0.00 0.00 2.52
274 275 4.261197 GCTGGAACGAAACAACAGAATCTT 60.261 41.667 0.00 0.00 0.00 2.40
275 276 3.251004 GCTGGAACGAAACAACAGAATCT 59.749 43.478 0.00 0.00 0.00 2.40
276 277 3.555518 GCTGGAACGAAACAACAGAATC 58.444 45.455 0.00 0.00 0.00 2.52
277 278 2.293399 GGCTGGAACGAAACAACAGAAT 59.707 45.455 0.00 0.00 0.00 2.40
278 279 1.673920 GGCTGGAACGAAACAACAGAA 59.326 47.619 0.00 0.00 0.00 3.02
279 280 1.305201 GGCTGGAACGAAACAACAGA 58.695 50.000 0.00 0.00 0.00 3.41
280 281 1.021202 TGGCTGGAACGAAACAACAG 58.979 50.000 0.00 0.00 0.00 3.16
281 282 1.686355 ATGGCTGGAACGAAACAACA 58.314 45.000 0.00 0.00 0.00 3.33
282 283 3.181500 GGATATGGCTGGAACGAAACAAC 60.181 47.826 0.00 0.00 0.00 3.32
283 284 3.013921 GGATATGGCTGGAACGAAACAA 58.986 45.455 0.00 0.00 0.00 2.83
284 285 2.238646 AGGATATGGCTGGAACGAAACA 59.761 45.455 0.00 0.00 0.00 2.83
285 286 2.872858 GAGGATATGGCTGGAACGAAAC 59.127 50.000 0.00 0.00 0.00 2.78
286 287 2.158813 GGAGGATATGGCTGGAACGAAA 60.159 50.000 0.00 0.00 0.00 3.46
287 288 1.416401 GGAGGATATGGCTGGAACGAA 59.584 52.381 0.00 0.00 0.00 3.85
288 289 1.048601 GGAGGATATGGCTGGAACGA 58.951 55.000 0.00 0.00 0.00 3.85
289 290 0.319900 CGGAGGATATGGCTGGAACG 60.320 60.000 0.00 0.00 0.00 3.95
290 291 0.759346 ACGGAGGATATGGCTGGAAC 59.241 55.000 0.00 0.00 0.00 3.62
291 292 0.758734 CACGGAGGATATGGCTGGAA 59.241 55.000 0.00 0.00 0.00 3.53
292 293 0.105709 TCACGGAGGATATGGCTGGA 60.106 55.000 0.00 0.00 0.00 3.86
293 294 0.979665 ATCACGGAGGATATGGCTGG 59.020 55.000 0.00 0.00 0.00 4.85
294 295 2.093973 GGTATCACGGAGGATATGGCTG 60.094 54.545 0.00 0.00 32.72 4.85
295 296 2.180276 GGTATCACGGAGGATATGGCT 58.820 52.381 0.00 0.00 32.72 4.75
296 297 1.899814 TGGTATCACGGAGGATATGGC 59.100 52.381 0.00 0.00 32.72 4.40
297 298 3.165875 ACTGGTATCACGGAGGATATGG 58.834 50.000 0.00 0.00 32.72 2.74
298 299 5.652452 TGATACTGGTATCACGGAGGATATG 59.348 44.000 16.55 0.00 44.87 1.78
299 300 5.827756 TGATACTGGTATCACGGAGGATAT 58.172 41.667 16.55 0.00 44.87 1.63
300 301 5.251182 TGATACTGGTATCACGGAGGATA 57.749 43.478 16.55 0.00 44.87 2.59
301 302 4.082845 CTGATACTGGTATCACGGAGGAT 58.917 47.826 16.55 0.00 44.87 3.24
302 303 3.487372 CTGATACTGGTATCACGGAGGA 58.513 50.000 16.55 0.00 44.87 3.71
303 304 2.029828 GCTGATACTGGTATCACGGAGG 60.030 54.545 16.55 9.74 44.87 4.30
304 305 2.623416 TGCTGATACTGGTATCACGGAG 59.377 50.000 16.55 10.02 44.87 4.63
305 306 2.661718 TGCTGATACTGGTATCACGGA 58.338 47.619 16.55 12.15 44.87 4.69
306 307 3.320626 CATGCTGATACTGGTATCACGG 58.679 50.000 16.55 10.86 44.87 4.94
307 308 3.005791 TCCATGCTGATACTGGTATCACG 59.994 47.826 16.55 13.85 44.87 4.35
308 309 4.039730 AGTCCATGCTGATACTGGTATCAC 59.960 45.833 16.55 14.00 44.87 3.06
309 310 4.226384 AGTCCATGCTGATACTGGTATCA 58.774 43.478 18.58 18.58 46.81 2.15
310 311 4.881019 AGTCCATGCTGATACTGGTATC 57.119 45.455 12.32 12.32 41.67 2.24
311 312 4.655649 TCAAGTCCATGCTGATACTGGTAT 59.344 41.667 0.00 0.00 0.00 2.73
312 313 4.030216 TCAAGTCCATGCTGATACTGGTA 58.970 43.478 0.00 0.00 0.00 3.25
313 314 2.840038 TCAAGTCCATGCTGATACTGGT 59.160 45.455 0.00 0.00 0.00 4.00
314 315 3.548745 TCAAGTCCATGCTGATACTGG 57.451 47.619 0.00 0.00 0.00 4.00
315 316 5.008415 GGAAATCAAGTCCATGCTGATACTG 59.992 44.000 0.00 0.00 35.05 2.74
316 317 5.104193 AGGAAATCAAGTCCATGCTGATACT 60.104 40.000 0.00 0.00 37.65 2.12
317 318 5.128919 AGGAAATCAAGTCCATGCTGATAC 58.871 41.667 0.00 0.00 37.65 2.24
318 319 5.378230 AGGAAATCAAGTCCATGCTGATA 57.622 39.130 0.00 0.00 37.65 2.15
319 320 4.246712 AGGAAATCAAGTCCATGCTGAT 57.753 40.909 0.00 0.00 37.65 2.90
320 321 3.726557 AGGAAATCAAGTCCATGCTGA 57.273 42.857 0.00 0.00 37.65 4.26
321 322 3.181503 CGAAGGAAATCAAGTCCATGCTG 60.182 47.826 0.00 0.00 37.65 4.41
322 323 3.012518 CGAAGGAAATCAAGTCCATGCT 58.987 45.455 0.00 0.00 37.65 3.79
323 324 2.749621 ACGAAGGAAATCAAGTCCATGC 59.250 45.455 0.00 0.00 37.65 4.06
324 325 3.753272 ACACGAAGGAAATCAAGTCCATG 59.247 43.478 0.00 0.00 37.65 3.66
325 326 3.753272 CACACGAAGGAAATCAAGTCCAT 59.247 43.478 0.00 0.00 37.65 3.41
326 327 3.138304 CACACGAAGGAAATCAAGTCCA 58.862 45.455 0.00 0.00 37.65 4.02
327 328 3.139077 ACACACGAAGGAAATCAAGTCC 58.861 45.455 0.00 0.00 35.17 3.85
328 329 4.511826 AGAACACACGAAGGAAATCAAGTC 59.488 41.667 0.00 0.00 0.00 3.01
329 330 4.273480 CAGAACACACGAAGGAAATCAAGT 59.727 41.667 0.00 0.00 0.00 3.16
330 331 4.273480 ACAGAACACACGAAGGAAATCAAG 59.727 41.667 0.00 0.00 0.00 3.02
331 332 4.196193 ACAGAACACACGAAGGAAATCAA 58.804 39.130 0.00 0.00 0.00 2.57
332 333 3.804036 ACAGAACACACGAAGGAAATCA 58.196 40.909 0.00 0.00 0.00 2.57
333 334 3.120991 CGACAGAACACACGAAGGAAATC 60.121 47.826 0.00 0.00 0.00 2.17
334 335 2.800544 CGACAGAACACACGAAGGAAAT 59.199 45.455 0.00 0.00 0.00 2.17
335 336 2.198406 CGACAGAACACACGAAGGAAA 58.802 47.619 0.00 0.00 0.00 3.13
336 337 1.847818 CGACAGAACACACGAAGGAA 58.152 50.000 0.00 0.00 0.00 3.36
337 338 0.596600 GCGACAGAACACACGAAGGA 60.597 55.000 0.00 0.00 0.00 3.36
338 339 1.557443 GGCGACAGAACACACGAAGG 61.557 60.000 0.00 0.00 0.00 3.46
339 340 1.853319 GGCGACAGAACACACGAAG 59.147 57.895 0.00 0.00 0.00 3.79
340 341 1.947146 CGGCGACAGAACACACGAA 60.947 57.895 0.00 0.00 0.00 3.85
341 342 2.354188 CGGCGACAGAACACACGA 60.354 61.111 0.00 0.00 0.00 4.35
342 343 4.059459 GCGGCGACAGAACACACG 62.059 66.667 12.98 0.00 0.00 4.49
343 344 3.712881 GGCGGCGACAGAACACAC 61.713 66.667 12.98 0.00 0.00 3.82
344 345 3.454587 AAGGCGGCGACAGAACACA 62.455 57.895 18.30 0.00 0.00 3.72
345 346 2.665185 AAGGCGGCGACAGAACAC 60.665 61.111 18.30 0.00 0.00 3.32
346 347 2.664851 CAAGGCGGCGACAGAACA 60.665 61.111 18.30 0.00 0.00 3.18
347 348 3.423154 CCAAGGCGGCGACAGAAC 61.423 66.667 18.30 0.00 0.00 3.01
348 349 1.609635 TATCCAAGGCGGCGACAGAA 61.610 55.000 18.30 0.00 33.14 3.02
349 350 2.055633 TATCCAAGGCGGCGACAGA 61.056 57.895 18.30 9.39 33.14 3.41
350 351 1.883084 GTATCCAAGGCGGCGACAG 60.883 63.158 18.30 6.92 33.14 3.51
351 352 2.173758 TTGTATCCAAGGCGGCGACA 62.174 55.000 18.30 1.90 33.14 4.35
352 353 0.814010 ATTGTATCCAAGGCGGCGAC 60.814 55.000 12.98 8.50 33.17 5.19
353 354 0.107410 AATTGTATCCAAGGCGGCGA 60.107 50.000 12.98 0.00 33.17 5.54
354 355 0.029300 CAATTGTATCCAAGGCGGCG 59.971 55.000 0.51 0.51 33.17 6.46
355 356 1.388547 TCAATTGTATCCAAGGCGGC 58.611 50.000 0.00 0.00 33.17 6.53
356 357 4.093408 CGATATCAATTGTATCCAAGGCGG 59.907 45.833 5.13 0.00 33.17 6.13
357 358 4.929211 TCGATATCAATTGTATCCAAGGCG 59.071 41.667 5.13 2.84 33.17 5.52
358 359 6.166279 TCTCGATATCAATTGTATCCAAGGC 58.834 40.000 5.13 0.00 33.17 4.35
359 360 6.312426 GCTCTCGATATCAATTGTATCCAAGG 59.688 42.308 5.13 7.03 33.17 3.61
360 361 7.095910 AGCTCTCGATATCAATTGTATCCAAG 58.904 38.462 5.13 10.41 33.17 3.61
361 362 6.997655 AGCTCTCGATATCAATTGTATCCAA 58.002 36.000 5.13 2.71 34.45 3.53
362 363 6.435591 AGAGCTCTCGATATCAATTGTATCCA 59.564 38.462 11.45 1.23 34.09 3.41
363 364 6.862209 AGAGCTCTCGATATCAATTGTATCC 58.138 40.000 11.45 0.86 34.09 2.59
364 365 8.755696 AAAGAGCTCTCGATATCAATTGTATC 57.244 34.615 18.55 10.67 34.09 2.24
367 368 9.553064 AAATAAAGAGCTCTCGATATCAATTGT 57.447 29.630 18.55 0.00 34.09 2.71
369 370 9.770097 TGAAATAAAGAGCTCTCGATATCAATT 57.230 29.630 18.55 6.72 34.09 2.32
370 371 9.770097 TTGAAATAAAGAGCTCTCGATATCAAT 57.230 29.630 18.55 6.70 34.09 2.57
371 372 9.770097 ATTGAAATAAAGAGCTCTCGATATCAA 57.230 29.630 24.29 24.29 34.09 2.57
372 373 9.201127 CATTGAAATAAAGAGCTCTCGATATCA 57.799 33.333 18.55 15.73 34.09 2.15
373 374 9.416794 TCATTGAAATAAAGAGCTCTCGATATC 57.583 33.333 18.55 13.37 34.09 1.63
374 375 9.421806 CTCATTGAAATAAAGAGCTCTCGATAT 57.578 33.333 18.55 12.99 34.09 1.63
375 376 8.633561 TCTCATTGAAATAAAGAGCTCTCGATA 58.366 33.333 18.55 11.21 34.09 2.92
376 377 7.495901 TCTCATTGAAATAAAGAGCTCTCGAT 58.504 34.615 18.55 10.58 34.09 3.59
377 378 6.867550 TCTCATTGAAATAAAGAGCTCTCGA 58.132 36.000 18.55 8.44 34.09 4.04
378 379 7.277539 AGTTCTCATTGAAATAAAGAGCTCTCG 59.722 37.037 18.55 0.00 36.30 4.04
379 380 8.389603 CAGTTCTCATTGAAATAAAGAGCTCTC 58.610 37.037 18.55 3.88 36.30 3.20
380 381 8.099537 TCAGTTCTCATTGAAATAAAGAGCTCT 58.900 33.333 11.45 11.45 36.30 4.09
381 382 8.261492 TCAGTTCTCATTGAAATAAAGAGCTC 57.739 34.615 5.27 5.27 36.30 4.09
382 383 8.804912 ATCAGTTCTCATTGAAATAAAGAGCT 57.195 30.769 0.00 0.00 36.30 4.09
383 384 9.286946 CAATCAGTTCTCATTGAAATAAAGAGC 57.713 33.333 0.00 0.00 36.30 4.09
391 392 9.897744 GTTTCATACAATCAGTTCTCATTGAAA 57.102 29.630 3.63 0.00 36.30 2.69
392 393 9.065798 TGTTTCATACAATCAGTTCTCATTGAA 57.934 29.630 3.63 0.00 34.60 2.69
393 394 8.620116 TGTTTCATACAATCAGTTCTCATTGA 57.380 30.769 3.63 0.00 34.60 2.57
394 395 9.285770 CATGTTTCATACAATCAGTTCTCATTG 57.714 33.333 0.00 0.00 40.89 2.82
395 396 9.234827 TCATGTTTCATACAATCAGTTCTCATT 57.765 29.630 0.00 0.00 40.89 2.57
396 397 8.797350 TCATGTTTCATACAATCAGTTCTCAT 57.203 30.769 0.00 0.00 40.89 2.90
397 398 8.620116 TTCATGTTTCATACAATCAGTTCTCA 57.380 30.769 0.00 0.00 40.89 3.27
509 510 6.581171 AAGACACCTCAAGAATTTCCATTC 57.419 37.500 0.00 0.00 39.45 2.67
510 511 6.983906 AAAGACACCTCAAGAATTTCCATT 57.016 33.333 0.00 0.00 0.00 3.16
511 512 6.983906 AAAAGACACCTCAAGAATTTCCAT 57.016 33.333 0.00 0.00 0.00 3.41
512 513 6.607198 AGAAAAAGACACCTCAAGAATTTCCA 59.393 34.615 0.00 0.00 0.00 3.53
513 514 7.043961 AGAAAAAGACACCTCAAGAATTTCC 57.956 36.000 0.00 0.00 0.00 3.13
515 516 9.971922 CATAAGAAAAAGACACCTCAAGAATTT 57.028 29.630 0.00 0.00 0.00 1.82
516 517 8.084684 GCATAAGAAAAAGACACCTCAAGAATT 58.915 33.333 0.00 0.00 0.00 2.17
517 518 7.231317 TGCATAAGAAAAAGACACCTCAAGAAT 59.769 33.333 0.00 0.00 0.00 2.40
518 519 6.545666 TGCATAAGAAAAAGACACCTCAAGAA 59.454 34.615 0.00 0.00 0.00 2.52
519 520 6.061441 TGCATAAGAAAAAGACACCTCAAGA 58.939 36.000 0.00 0.00 0.00 3.02
520 521 6.317789 TGCATAAGAAAAAGACACCTCAAG 57.682 37.500 0.00 0.00 0.00 3.02
521 522 6.294675 CCATGCATAAGAAAAAGACACCTCAA 60.295 38.462 0.00 0.00 0.00 3.02
522 523 5.183713 CCATGCATAAGAAAAAGACACCTCA 59.816 40.000 0.00 0.00 0.00 3.86
523 524 5.183904 ACCATGCATAAGAAAAAGACACCTC 59.816 40.000 0.00 0.00 0.00 3.85
524 525 5.079643 ACCATGCATAAGAAAAAGACACCT 58.920 37.500 0.00 0.00 0.00 4.00
525 526 5.391312 ACCATGCATAAGAAAAAGACACC 57.609 39.130 0.00 0.00 0.00 4.16
526 527 5.088739 CGACCATGCATAAGAAAAAGACAC 58.911 41.667 0.00 0.00 0.00 3.67
527 528 4.379394 GCGACCATGCATAAGAAAAAGACA 60.379 41.667 0.00 0.00 34.15 3.41
528 529 4.098416 GCGACCATGCATAAGAAAAAGAC 58.902 43.478 0.00 0.00 34.15 3.01
529 530 3.755905 TGCGACCATGCATAAGAAAAAGA 59.244 39.130 0.00 0.00 40.62 2.52
530 531 4.095410 TGCGACCATGCATAAGAAAAAG 57.905 40.909 0.00 0.00 40.62 2.27
531 532 4.022416 ACTTGCGACCATGCATAAGAAAAA 60.022 37.500 10.80 0.00 45.78 1.94
532 533 3.505680 ACTTGCGACCATGCATAAGAAAA 59.494 39.130 10.80 0.00 45.78 2.29
533 534 3.081061 ACTTGCGACCATGCATAAGAAA 58.919 40.909 10.80 0.00 45.78 2.52
534 535 2.710377 ACTTGCGACCATGCATAAGAA 58.290 42.857 10.80 0.00 45.78 2.52
535 536 2.401583 ACTTGCGACCATGCATAAGA 57.598 45.000 10.80 0.00 45.78 2.10
536 537 2.419673 TCAACTTGCGACCATGCATAAG 59.580 45.455 0.00 0.42 45.78 1.73
537 538 2.419673 CTCAACTTGCGACCATGCATAA 59.580 45.455 0.00 0.00 45.78 1.90
538 539 2.009051 CTCAACTTGCGACCATGCATA 58.991 47.619 0.00 0.00 45.78 3.14
539 540 0.806868 CTCAACTTGCGACCATGCAT 59.193 50.000 0.00 0.00 45.78 3.96
540 541 1.236616 CCTCAACTTGCGACCATGCA 61.237 55.000 0.00 0.00 44.61 3.96
541 542 1.237285 ACCTCAACTTGCGACCATGC 61.237 55.000 0.00 0.00 0.00 4.06
542 543 0.518636 CACCTCAACTTGCGACCATG 59.481 55.000 0.00 0.00 0.00 3.66
543 544 0.396435 TCACCTCAACTTGCGACCAT 59.604 50.000 0.00 0.00 0.00 3.55
544 545 0.396435 ATCACCTCAACTTGCGACCA 59.604 50.000 0.00 0.00 0.00 4.02
545 546 1.079503 GATCACCTCAACTTGCGACC 58.920 55.000 0.00 0.00 0.00 4.79
546 547 1.795768 TGATCACCTCAACTTGCGAC 58.204 50.000 0.00 0.00 0.00 5.19
547 548 2.768253 ATGATCACCTCAACTTGCGA 57.232 45.000 0.00 0.00 37.44 5.10
548 549 3.837213 AAATGATCACCTCAACTTGCG 57.163 42.857 0.00 0.00 37.44 4.85
549 550 5.412594 TGAGTAAATGATCACCTCAACTTGC 59.587 40.000 0.00 0.00 37.44 4.01
550 551 7.470079 CATGAGTAAATGATCACCTCAACTTG 58.530 38.462 15.82 9.26 37.44 3.16
551 552 6.094603 GCATGAGTAAATGATCACCTCAACTT 59.905 38.462 15.82 0.00 37.44 2.66
552 553 5.587844 GCATGAGTAAATGATCACCTCAACT 59.412 40.000 15.82 8.38 37.44 3.16
553 554 5.355071 TGCATGAGTAAATGATCACCTCAAC 59.645 40.000 15.82 12.68 37.44 3.18
554 555 5.499313 TGCATGAGTAAATGATCACCTCAA 58.501 37.500 15.82 2.91 37.44 3.02
555 556 5.101648 TGCATGAGTAAATGATCACCTCA 57.898 39.130 14.78 14.78 38.53 3.86
556 557 5.530171 ACATGCATGAGTAAATGATCACCTC 59.470 40.000 32.75 2.11 0.00 3.85
557 558 5.443283 ACATGCATGAGTAAATGATCACCT 58.557 37.500 32.75 1.36 0.00 4.00
558 559 5.762825 ACATGCATGAGTAAATGATCACC 57.237 39.130 32.75 0.00 0.00 4.02
559 560 6.788243 TCAACATGCATGAGTAAATGATCAC 58.212 36.000 32.75 0.00 0.00 3.06
560 561 7.393841 TTCAACATGCATGAGTAAATGATCA 57.606 32.000 32.75 0.00 0.00 2.92
561 562 7.919091 ACATTCAACATGCATGAGTAAATGATC 59.081 33.333 32.75 0.00 0.00 2.92
562 563 7.778083 ACATTCAACATGCATGAGTAAATGAT 58.222 30.769 32.75 19.06 0.00 2.45
563 564 7.160547 ACATTCAACATGCATGAGTAAATGA 57.839 32.000 32.75 20.32 0.00 2.57
564 565 7.542824 TCAACATTCAACATGCATGAGTAAATG 59.457 33.333 32.75 29.21 0.00 2.32
565 566 7.604549 TCAACATTCAACATGCATGAGTAAAT 58.395 30.769 32.75 20.47 0.00 1.40
566 567 6.979465 TCAACATTCAACATGCATGAGTAAA 58.021 32.000 32.75 19.29 0.00 2.01
567 568 6.349528 CCTCAACATTCAACATGCATGAGTAA 60.350 38.462 32.75 20.93 35.91 2.24
568 569 5.124297 CCTCAACATTCAACATGCATGAGTA 59.876 40.000 32.75 17.64 35.91 2.59
569 570 4.082408 CCTCAACATTCAACATGCATGAGT 60.082 41.667 32.75 16.91 35.91 3.41
570 571 4.082408 ACCTCAACATTCAACATGCATGAG 60.082 41.667 32.75 22.67 36.69 2.90
571 572 3.827876 ACCTCAACATTCAACATGCATGA 59.172 39.130 32.75 11.13 0.00 3.07
572 573 3.924073 CACCTCAACATTCAACATGCATG 59.076 43.478 25.09 25.09 0.00 4.06
573 574 3.827876 TCACCTCAACATTCAACATGCAT 59.172 39.130 0.00 0.00 0.00 3.96
574 575 3.004629 GTCACCTCAACATTCAACATGCA 59.995 43.478 0.00 0.00 0.00 3.96
575 576 3.004629 TGTCACCTCAACATTCAACATGC 59.995 43.478 0.00 0.00 0.00 4.06
576 577 4.834357 TGTCACCTCAACATTCAACATG 57.166 40.909 0.00 0.00 0.00 3.21
577 578 4.321452 GCATGTCACCTCAACATTCAACAT 60.321 41.667 0.00 0.00 35.19 2.71
578 579 3.004629 GCATGTCACCTCAACATTCAACA 59.995 43.478 0.00 0.00 35.19 3.33
579 580 3.254166 AGCATGTCACCTCAACATTCAAC 59.746 43.478 0.00 0.00 35.19 3.18
580 581 3.489355 AGCATGTCACCTCAACATTCAA 58.511 40.909 0.00 0.00 35.19 2.69
581 582 3.144657 AGCATGTCACCTCAACATTCA 57.855 42.857 0.00 0.00 35.19 2.57
582 583 3.829948 CAAGCATGTCACCTCAACATTC 58.170 45.455 0.00 0.00 35.19 2.67
583 584 2.029649 GCAAGCATGTCACCTCAACATT 60.030 45.455 0.00 0.00 35.19 2.71
584 585 1.542915 GCAAGCATGTCACCTCAACAT 59.457 47.619 0.00 0.00 37.85 2.71
585 586 0.953727 GCAAGCATGTCACCTCAACA 59.046 50.000 0.00 0.00 0.00 3.33
586 587 0.953727 TGCAAGCATGTCACCTCAAC 59.046 50.000 0.00 0.00 0.00 3.18
587 588 1.542472 CATGCAAGCATGTCACCTCAA 59.458 47.619 23.25 0.00 46.20 3.02
588 589 1.170442 CATGCAAGCATGTCACCTCA 58.830 50.000 23.25 0.00 46.20 3.86
597 598 6.537301 CCATATTTTTCTCAACATGCAAGCAT 59.463 34.615 0.86 0.86 37.08 3.79
598 599 5.870433 CCATATTTTTCTCAACATGCAAGCA 59.130 36.000 0.00 0.00 0.00 3.91
599 600 5.870978 ACCATATTTTTCTCAACATGCAAGC 59.129 36.000 0.00 0.00 0.00 4.01
600 601 6.869913 ACACCATATTTTTCTCAACATGCAAG 59.130 34.615 0.00 0.00 0.00 4.01
601 602 6.757237 ACACCATATTTTTCTCAACATGCAA 58.243 32.000 0.00 0.00 0.00 4.08
602 603 6.343716 ACACCATATTTTTCTCAACATGCA 57.656 33.333 0.00 0.00 0.00 3.96
603 604 8.810427 CATAACACCATATTTTTCTCAACATGC 58.190 33.333 0.00 0.00 0.00 4.06
604 605 9.304731 CCATAACACCATATTTTTCTCAACATG 57.695 33.333 0.00 0.00 0.00 3.21
605 606 8.477256 CCCATAACACCATATTTTTCTCAACAT 58.523 33.333 0.00 0.00 0.00 2.71
606 607 7.578571 GCCCATAACACCATATTTTTCTCAACA 60.579 37.037 0.00 0.00 0.00 3.33
607 608 6.756542 GCCCATAACACCATATTTTTCTCAAC 59.243 38.462 0.00 0.00 0.00 3.18
608 609 6.405286 CGCCCATAACACCATATTTTTCTCAA 60.405 38.462 0.00 0.00 0.00 3.02
609 610 5.067153 CGCCCATAACACCATATTTTTCTCA 59.933 40.000 0.00 0.00 0.00 3.27
610 611 5.298276 TCGCCCATAACACCATATTTTTCTC 59.702 40.000 0.00 0.00 0.00 2.87
611 612 5.197451 TCGCCCATAACACCATATTTTTCT 58.803 37.500 0.00 0.00 0.00 2.52
612 613 5.298276 TCTCGCCCATAACACCATATTTTTC 59.702 40.000 0.00 0.00 0.00 2.29
613 614 5.197451 TCTCGCCCATAACACCATATTTTT 58.803 37.500 0.00 0.00 0.00 1.94
614 615 4.787551 TCTCGCCCATAACACCATATTTT 58.212 39.130 0.00 0.00 0.00 1.82
621 622 1.146263 CCCTCTCGCCCATAACACC 59.854 63.158 0.00 0.00 0.00 4.16
627 628 2.228841 AAAATGCCCCTCTCGCCCAT 62.229 55.000 0.00 0.00 0.00 4.00
630 631 2.418083 CCAAAATGCCCCTCTCGCC 61.418 63.158 0.00 0.00 0.00 5.54
631 632 1.678970 ACCAAAATGCCCCTCTCGC 60.679 57.895 0.00 0.00 0.00 5.03
693 695 3.197092 CCATCACGCATCGCAGCA 61.197 61.111 0.00 0.00 0.00 4.41
764 766 7.360861 CCACGTACAAATTGTGAACATGACTAT 60.361 37.037 9.15 0.00 35.66 2.12
822 836 1.227380 CGCCCAGGTAGCACATCTC 60.227 63.158 0.00 0.00 0.00 2.75
829 843 3.134127 CAAAGCCGCCCAGGTAGC 61.134 66.667 0.00 0.00 43.70 3.58
832 846 1.045911 TTTTTCAAAGCCGCCCAGGT 61.046 50.000 0.00 0.00 43.70 4.00
847 861 1.880186 CGCGTAGTGGGCCATTTTT 59.120 52.632 10.70 0.00 0.00 1.94
884 899 6.317893 ACAGATACATTTATTTCCCGAACCAC 59.682 38.462 0.00 0.00 0.00 4.16
1296 1338 0.826715 CCCATCGGCAGAGAAGAAGA 59.173 55.000 0.00 0.00 0.00 2.87
1322 1364 4.502259 CCTTCATAATCCTTCAGTCCTCCG 60.502 50.000 0.00 0.00 0.00 4.63
1358 1400 1.197721 CGAGTGAGCATTGTTTCACCC 59.802 52.381 15.33 7.13 43.64 4.61
1738 1787 0.391130 GCATGAACGTCCTGGTGCTA 60.391 55.000 0.00 0.00 0.00 3.49
1780 2320 1.873165 GCCACGGCTTGAAATCGAA 59.127 52.632 0.00 0.00 38.26 3.71
2021 2885 2.094545 GGCACACAACCCAATCAGATTC 60.095 50.000 0.00 0.00 0.00 2.52
2738 3870 3.377172 CGACTGTTCCTGGTTCAGTTTTT 59.623 43.478 20.37 5.29 41.58 1.94
2947 4116 2.746904 CAAATGGCATGTCGTACAGGAA 59.253 45.455 0.00 0.00 30.30 3.36
2948 4117 2.355197 CAAATGGCATGTCGTACAGGA 58.645 47.619 0.00 0.00 30.30 3.86
3124 4613 4.356289 TCTTTTTCTGTTTTTACGCAGGC 58.644 39.130 0.00 0.00 33.81 4.85
3176 4695 9.688592 AAACTTTTATACCTATAAGACGGATCG 57.311 33.333 0.00 0.00 30.57 3.69
3283 4802 1.606994 GCACCAACGATGTACAGTCCA 60.607 52.381 0.33 0.00 0.00 4.02
3312 4831 5.290493 TCTCCTTTGCTTTCTTCAGTACA 57.710 39.130 0.00 0.00 0.00 2.90
3357 4876 1.004745 TCTGGCTTGAATTCACTCCCC 59.995 52.381 7.89 6.76 0.00 4.81
3517 5039 2.875933 CGCACGGAATACACCCATAAAT 59.124 45.455 0.00 0.00 0.00 1.40
3533 5055 1.044725 GTGCTTGTCATTTTCGCACG 58.955 50.000 0.00 0.00 41.06 5.34
3557 5079 0.179059 TGGTTTGCACTCTCGCTTCA 60.179 50.000 0.00 0.00 0.00 3.02
3840 5391 6.098124 ACCAAATTTCTCAAACATTGTCCTGA 59.902 34.615 0.00 0.00 0.00 3.86
4032 5583 2.941064 CACACCATTCCATAGTGCTCAG 59.059 50.000 0.00 0.00 34.83 3.35
4076 5627 5.808366 ATTAAGGAAGAGGATGTGCGATA 57.192 39.130 0.00 0.00 0.00 2.92
4113 5664 2.223044 GGGAGCTTGTCGCGATTTTTAG 60.223 50.000 14.06 6.80 45.59 1.85
4115 5666 0.521735 GGGAGCTTGTCGCGATTTTT 59.478 50.000 14.06 0.00 45.59 1.94
4125 5678 2.887151 AGCAAATGTAGGGAGCTTGT 57.113 45.000 0.00 0.00 29.98 3.16
4157 5710 4.589908 AGAGTCATTATTCCGGTGCTTTT 58.410 39.130 0.00 0.00 0.00 2.27
4180 5733 6.880529 CCTAAAAACCAGCATCCATGAAAAAT 59.119 34.615 0.00 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.