Multiple sequence alignment - TraesCS5A01G154000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G154000 chr5A 100.000 3480 0 0 1699 5178 331406416 331402937 0.000000e+00 6427.0
1 TraesCS5A01G154000 chr5A 100.000 1234 0 0 1 1234 331408114 331406881 0.000000e+00 2279.0
2 TraesCS5A01G154000 chr5D 96.377 1656 39 8 3529 5178 247615308 247613668 0.000000e+00 2706.0
3 TraesCS5A01G154000 chr5D 91.857 921 55 9 329 1234 247618417 247617502 0.000000e+00 1267.0
4 TraesCS5A01G154000 chr5D 96.006 701 14 3 1699 2396 247617096 247616407 0.000000e+00 1127.0
5 TraesCS5A01G154000 chr5D 95.042 706 26 5 2439 3135 247616415 247615710 0.000000e+00 1101.0
6 TraesCS5A01G154000 chr5D 94.207 328 14 2 3208 3535 247615684 247615362 3.600000e-136 496.0
7 TraesCS5A01G154000 chr5D 82.879 257 37 4 574 828 554569216 554568965 1.880000e-54 224.0
8 TraesCS5A01G154000 chr5B 96.168 1644 43 8 3529 5166 281841715 281840086 0.000000e+00 2669.0
9 TraesCS5A01G154000 chr5B 92.308 1105 51 16 2439 3535 281842847 281841769 0.000000e+00 1539.0
10 TraesCS5A01G154000 chr5B 91.857 921 55 9 329 1234 281844789 281843874 0.000000e+00 1267.0
11 TraesCS5A01G154000 chr5B 97.432 701 15 2 1699 2396 281843539 281842839 0.000000e+00 1192.0
12 TraesCS5A01G154000 chr5B 81.522 276 42 7 556 828 696159339 696159608 8.730000e-53 219.0
13 TraesCS5A01G154000 chr5B 98.113 53 1 0 2394 2446 694156182 694156234 5.520000e-15 93.5
14 TraesCS5A01G154000 chr4B 96.491 57 1 1 2388 2443 143941258 143941314 5.520000e-15 93.5
15 TraesCS5A01G154000 chr4A 96.491 57 1 1 2388 2443 688239338 688239282 5.520000e-15 93.5
16 TraesCS5A01G154000 chr3D 98.113 53 1 0 2392 2444 8821348 8821400 5.520000e-15 93.5
17 TraesCS5A01G154000 chr7B 93.443 61 3 1 2393 2453 237307572 237307631 7.140000e-14 89.8
18 TraesCS5A01G154000 chr2D 93.333 60 2 2 2386 2443 468096952 468096893 2.570000e-13 87.9
19 TraesCS5A01G154000 chr3B 91.935 62 3 2 2388 2448 14847679 14847619 9.240000e-13 86.1
20 TraesCS5A01G154000 chr2B 88.571 70 4 4 2373 2440 783114795 783114862 1.200000e-11 82.4
21 TraesCS5A01G154000 chr2B 94.231 52 3 0 2392 2443 382503199 382503148 4.300000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G154000 chr5A 331402937 331408114 5177 True 4353.00 6427 100.00000 1 5178 2 chr5A.!!$R1 5177
1 TraesCS5A01G154000 chr5D 247613668 247618417 4749 True 1339.40 2706 94.69780 329 5178 5 chr5D.!!$R2 4849
2 TraesCS5A01G154000 chr5B 281840086 281844789 4703 True 1666.75 2669 94.44125 329 5166 4 chr5B.!!$R1 4837

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
146 147 0.036306 CCCACGCCCCCATCTATAAC 59.964 60.0 0.00 0.0 0.00 1.89 F
189 190 0.105964 TATGTACTCGTGCATGGGCC 59.894 55.0 5.46 0.0 40.13 5.80 F
677 688 0.180878 TTCGGTTGGGTTCGAAGGTT 59.819 50.0 0.00 0.0 39.94 3.50 F
814 826 0.707822 CGCGCAATAAAAGTGTTGGC 59.292 50.0 8.75 0.0 0.00 4.52 F
2631 2654 0.038892 TGACGTGCTTCGGTAACTCC 60.039 55.0 0.00 0.0 44.69 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2030 2048 1.378250 CCTCCTCTTGCCCTTGCTG 60.378 63.158 0.00 0.0 38.71 4.41 R
2181 2199 1.052124 AGACACCAACCCTCCGAACA 61.052 55.000 0.00 0.0 0.00 3.18 R
2518 2541 1.003959 TAAGCATGCACAGGTCGCA 60.004 52.632 21.98 0.0 44.94 5.10 R
2810 2838 0.791610 CGGAAACACCAAATACGCGC 60.792 55.000 5.73 0.0 38.90 6.86 R
4414 4505 0.178068 CCACATTAGCTAGCACCGGT 59.822 55.000 18.83 0.0 0.00 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 9.571816 AAAAAGAAAGGCCATTCATGAATAAAA 57.428 25.926 22.00 0.00 0.00 1.52
29 30 9.743581 AAAAGAAAGGCCATTCATGAATAAAAT 57.256 25.926 22.00 5.25 0.00 1.82
35 36 9.991906 AAGGCCATTCATGAATAAAATATTCAG 57.008 29.630 20.32 4.59 40.80 3.02
36 37 9.370930 AGGCCATTCATGAATAAAATATTCAGA 57.629 29.630 20.32 11.15 40.80 3.27
37 38 9.635520 GGCCATTCATGAATAAAATATTCAGAG 57.364 33.333 20.32 11.58 40.80 3.35
38 39 9.136952 GCCATTCATGAATAAAATATTCAGAGC 57.863 33.333 20.32 6.68 40.80 4.09
39 40 9.635520 CCATTCATGAATAAAATATTCAGAGCC 57.364 33.333 20.32 0.00 40.80 4.70
40 41 9.635520 CATTCATGAATAAAATATTCAGAGCCC 57.364 33.333 20.32 0.00 40.80 5.19
41 42 9.597681 ATTCATGAATAAAATATTCAGAGCCCT 57.402 29.630 19.42 0.00 40.80 5.19
45 46 8.340618 TGAATAAAATATTCAGAGCCCTATGC 57.659 34.615 8.36 0.00 35.15 3.14
46 47 7.394359 TGAATAAAATATTCAGAGCCCTATGCC 59.606 37.037 8.36 0.00 35.35 4.40
47 48 4.729552 AAATATTCAGAGCCCTATGCCA 57.270 40.909 0.00 0.00 42.71 4.92
48 49 4.729552 AATATTCAGAGCCCTATGCCAA 57.270 40.909 0.00 0.00 42.71 4.52
49 50 4.942363 ATATTCAGAGCCCTATGCCAAT 57.058 40.909 0.00 0.00 42.71 3.16
50 51 6.392911 AATATTCAGAGCCCTATGCCAATA 57.607 37.500 0.00 0.00 42.71 1.90
51 52 4.942363 ATTCAGAGCCCTATGCCAATAT 57.058 40.909 0.00 0.00 42.71 1.28
52 53 7.696618 ATATTCAGAGCCCTATGCCAATATA 57.303 36.000 0.00 0.00 42.71 0.86
53 54 4.826274 TCAGAGCCCTATGCCAATATAC 57.174 45.455 0.00 0.00 42.71 1.47
54 55 4.167319 TCAGAGCCCTATGCCAATATACA 58.833 43.478 0.00 0.00 42.71 2.29
55 56 4.784838 TCAGAGCCCTATGCCAATATACAT 59.215 41.667 0.00 0.00 42.71 2.29
56 57 4.880120 CAGAGCCCTATGCCAATATACATG 59.120 45.833 0.00 0.00 42.71 3.21
57 58 4.537688 AGAGCCCTATGCCAATATACATGT 59.462 41.667 2.69 2.69 42.71 3.21
58 59 5.014544 AGAGCCCTATGCCAATATACATGTT 59.985 40.000 2.30 0.00 42.71 2.71
59 60 5.644188 AGCCCTATGCCAATATACATGTTT 58.356 37.500 2.30 0.00 42.71 2.83
60 61 5.477984 AGCCCTATGCCAATATACATGTTTG 59.522 40.000 2.30 2.32 42.71 2.93
61 62 5.243730 GCCCTATGCCAATATACATGTTTGT 59.756 40.000 2.30 0.00 39.98 2.83
62 63 6.239289 GCCCTATGCCAATATACATGTTTGTT 60.239 38.462 2.30 0.00 37.28 2.83
63 64 7.370383 CCCTATGCCAATATACATGTTTGTTC 58.630 38.462 2.30 0.00 37.28 3.18
64 65 7.014134 CCCTATGCCAATATACATGTTTGTTCA 59.986 37.037 2.30 3.81 37.28 3.18
65 66 8.412456 CCTATGCCAATATACATGTTTGTTCAA 58.588 33.333 2.30 0.00 37.28 2.69
66 67 9.236691 CTATGCCAATATACATGTTTGTTCAAC 57.763 33.333 2.30 0.00 37.28 3.18
67 68 6.089476 TGCCAATATACATGTTTGTTCAACG 58.911 36.000 2.30 0.00 38.36 4.10
68 69 6.090129 GCCAATATACATGTTTGTTCAACGT 58.910 36.000 2.30 0.00 38.36 3.99
69 70 6.584563 GCCAATATACATGTTTGTTCAACGTT 59.415 34.615 2.30 0.00 38.36 3.99
70 71 7.115663 GCCAATATACATGTTTGTTCAACGTTT 59.884 33.333 2.30 0.00 38.36 3.60
71 72 8.973378 CCAATATACATGTTTGTTCAACGTTTT 58.027 29.630 2.30 0.00 38.36 2.43
78 79 9.535270 ACATGTTTGTTCAACGTTTTATTTTTG 57.465 25.926 0.00 0.00 38.36 2.44
79 80 9.746711 CATGTTTGTTCAACGTTTTATTTTTGA 57.253 25.926 0.00 0.00 38.36 2.69
80 81 9.965748 ATGTTTGTTCAACGTTTTATTTTTGAG 57.034 25.926 0.00 0.00 38.36 3.02
81 82 7.952637 TGTTTGTTCAACGTTTTATTTTTGAGC 59.047 29.630 0.00 0.00 38.36 4.26
82 83 7.820044 TTGTTCAACGTTTTATTTTTGAGCT 57.180 28.000 0.00 0.00 32.28 4.09
83 84 7.820044 TGTTCAACGTTTTATTTTTGAGCTT 57.180 28.000 0.00 0.00 32.28 3.74
84 85 7.670916 TGTTCAACGTTTTATTTTTGAGCTTG 58.329 30.769 0.00 0.00 32.28 4.01
85 86 6.267500 TCAACGTTTTATTTTTGAGCTTGC 57.733 33.333 0.00 0.00 0.00 4.01
86 87 5.233263 TCAACGTTTTATTTTTGAGCTTGCC 59.767 36.000 0.00 0.00 0.00 4.52
87 88 4.688021 ACGTTTTATTTTTGAGCTTGCCA 58.312 34.783 0.00 0.00 0.00 4.92
88 89 5.112686 ACGTTTTATTTTTGAGCTTGCCAA 58.887 33.333 0.00 0.00 0.00 4.52
89 90 5.006261 ACGTTTTATTTTTGAGCTTGCCAAC 59.994 36.000 0.00 0.00 0.00 3.77
90 91 5.006165 CGTTTTATTTTTGAGCTTGCCAACA 59.994 36.000 0.00 0.00 0.00 3.33
91 92 6.292811 CGTTTTATTTTTGAGCTTGCCAACAT 60.293 34.615 0.00 0.00 0.00 2.71
92 93 6.542574 TTTATTTTTGAGCTTGCCAACATG 57.457 33.333 0.00 0.00 0.00 3.21
93 94 3.815856 TTTTTGAGCTTGCCAACATGA 57.184 38.095 0.00 0.00 0.00 3.07
94 95 3.815856 TTTTGAGCTTGCCAACATGAA 57.184 38.095 0.00 0.00 0.00 2.57
95 96 3.815856 TTTGAGCTTGCCAACATGAAA 57.184 38.095 0.00 0.00 0.00 2.69
96 97 2.798976 TGAGCTTGCCAACATGAAAC 57.201 45.000 0.00 0.00 0.00 2.78
97 98 1.340889 TGAGCTTGCCAACATGAAACC 59.659 47.619 0.00 0.00 0.00 3.27
98 99 0.681175 AGCTTGCCAACATGAAACCC 59.319 50.000 0.00 0.00 0.00 4.11
99 100 0.320683 GCTTGCCAACATGAAACCCC 60.321 55.000 0.00 0.00 0.00 4.95
100 101 1.341080 CTTGCCAACATGAAACCCCT 58.659 50.000 0.00 0.00 0.00 4.79
101 102 2.524306 CTTGCCAACATGAAACCCCTA 58.476 47.619 0.00 0.00 0.00 3.53
102 103 2.214376 TGCCAACATGAAACCCCTAG 57.786 50.000 0.00 0.00 0.00 3.02
103 104 1.707989 TGCCAACATGAAACCCCTAGA 59.292 47.619 0.00 0.00 0.00 2.43
104 105 2.109128 TGCCAACATGAAACCCCTAGAA 59.891 45.455 0.00 0.00 0.00 2.10
105 106 2.755103 GCCAACATGAAACCCCTAGAAG 59.245 50.000 0.00 0.00 0.00 2.85
106 107 2.755103 CCAACATGAAACCCCTAGAAGC 59.245 50.000 0.00 0.00 0.00 3.86
107 108 3.562176 CCAACATGAAACCCCTAGAAGCT 60.562 47.826 0.00 0.00 0.00 3.74
108 109 3.356529 ACATGAAACCCCTAGAAGCTG 57.643 47.619 0.00 0.00 0.00 4.24
109 110 2.019984 CATGAAACCCCTAGAAGCTGC 58.980 52.381 0.00 0.00 0.00 5.25
110 111 0.036388 TGAAACCCCTAGAAGCTGCG 60.036 55.000 0.00 0.00 0.00 5.18
111 112 0.744771 GAAACCCCTAGAAGCTGCGG 60.745 60.000 0.00 0.00 0.00 5.69
112 113 1.489560 AAACCCCTAGAAGCTGCGGT 61.490 55.000 0.00 0.00 0.00 5.68
113 114 1.900545 AACCCCTAGAAGCTGCGGTC 61.901 60.000 0.00 0.00 0.00 4.79
114 115 2.359169 CCCCTAGAAGCTGCGGTCA 61.359 63.158 8.70 0.00 0.00 4.02
115 116 1.690219 CCCCTAGAAGCTGCGGTCAT 61.690 60.000 8.70 0.00 0.00 3.06
116 117 0.531532 CCCTAGAAGCTGCGGTCATG 60.532 60.000 8.70 0.00 0.00 3.07
117 118 1.156645 CCTAGAAGCTGCGGTCATGC 61.157 60.000 8.70 0.00 0.00 4.06
118 119 1.153369 TAGAAGCTGCGGTCATGCC 60.153 57.895 8.70 0.00 0.00 4.40
119 120 1.617018 TAGAAGCTGCGGTCATGCCT 61.617 55.000 8.70 0.00 34.25 4.75
120 121 2.437359 AAGCTGCGGTCATGCCTC 60.437 61.111 0.00 0.00 34.25 4.70
121 122 4.827087 AGCTGCGGTCATGCCTCG 62.827 66.667 0.00 2.07 34.25 4.63
143 144 3.570212 GCCCACGCCCCCATCTAT 61.570 66.667 0.00 0.00 0.00 1.98
144 145 2.221299 GCCCACGCCCCCATCTATA 61.221 63.158 0.00 0.00 0.00 1.31
145 146 1.774894 GCCCACGCCCCCATCTATAA 61.775 60.000 0.00 0.00 0.00 0.98
146 147 0.036306 CCCACGCCCCCATCTATAAC 59.964 60.000 0.00 0.00 0.00 1.89
147 148 1.056660 CCACGCCCCCATCTATAACT 58.943 55.000 0.00 0.00 0.00 2.24
148 149 1.270839 CCACGCCCCCATCTATAACTG 60.271 57.143 0.00 0.00 0.00 3.16
149 150 1.416401 CACGCCCCCATCTATAACTGT 59.584 52.381 0.00 0.00 0.00 3.55
150 151 2.124411 ACGCCCCCATCTATAACTGTT 58.876 47.619 0.00 0.00 0.00 3.16
151 152 2.158813 ACGCCCCCATCTATAACTGTTG 60.159 50.000 2.69 0.00 0.00 3.33
152 153 2.810400 CGCCCCCATCTATAACTGTTGG 60.810 54.545 2.69 0.00 0.00 3.77
153 154 2.441750 GCCCCCATCTATAACTGTTGGA 59.558 50.000 2.69 0.00 0.00 3.53
154 155 3.117663 GCCCCCATCTATAACTGTTGGAA 60.118 47.826 2.69 0.00 0.00 3.53
155 156 4.718961 CCCCCATCTATAACTGTTGGAAG 58.281 47.826 2.69 0.00 0.00 3.46
156 157 4.137543 CCCCATCTATAACTGTTGGAAGC 58.862 47.826 2.69 0.00 0.00 3.86
157 158 4.385199 CCCCATCTATAACTGTTGGAAGCA 60.385 45.833 2.69 0.00 0.00 3.91
158 159 4.576463 CCCATCTATAACTGTTGGAAGCAC 59.424 45.833 2.69 0.00 0.00 4.40
159 160 5.431765 CCATCTATAACTGTTGGAAGCACT 58.568 41.667 2.69 0.00 0.00 4.40
160 161 5.295292 CCATCTATAACTGTTGGAAGCACTG 59.705 44.000 2.69 0.00 0.00 3.66
161 162 4.832248 TCTATAACTGTTGGAAGCACTGG 58.168 43.478 2.69 0.00 0.00 4.00
162 163 3.508845 ATAACTGTTGGAAGCACTGGT 57.491 42.857 2.69 0.00 0.00 4.00
163 164 1.392589 AACTGTTGGAAGCACTGGTG 58.607 50.000 0.00 0.00 0.00 4.17
164 165 0.466189 ACTGTTGGAAGCACTGGTGG 60.466 55.000 2.84 0.00 0.00 4.61
165 166 0.179020 CTGTTGGAAGCACTGGTGGA 60.179 55.000 2.84 0.00 0.00 4.02
166 167 0.179020 TGTTGGAAGCACTGGTGGAG 60.179 55.000 2.84 0.00 0.00 3.86
167 168 1.228245 TTGGAAGCACTGGTGGAGC 60.228 57.895 2.84 0.00 0.00 4.70
168 169 1.708993 TTGGAAGCACTGGTGGAGCT 61.709 55.000 2.84 0.00 41.03 4.09
169 170 0.835971 TGGAAGCACTGGTGGAGCTA 60.836 55.000 2.84 0.00 37.70 3.32
170 171 0.543749 GGAAGCACTGGTGGAGCTAT 59.456 55.000 2.84 0.00 37.70 2.97
171 172 1.762957 GGAAGCACTGGTGGAGCTATA 59.237 52.381 2.84 0.00 37.70 1.31
172 173 2.370189 GGAAGCACTGGTGGAGCTATAT 59.630 50.000 2.84 0.00 37.70 0.86
173 174 3.397482 GAAGCACTGGTGGAGCTATATG 58.603 50.000 2.84 0.00 37.70 1.78
174 175 2.402564 AGCACTGGTGGAGCTATATGT 58.597 47.619 2.84 0.00 36.73 2.29
175 176 3.576861 AGCACTGGTGGAGCTATATGTA 58.423 45.455 2.84 0.00 36.73 2.29
176 177 3.322254 AGCACTGGTGGAGCTATATGTAC 59.678 47.826 2.84 0.00 36.73 2.90
177 178 3.322254 GCACTGGTGGAGCTATATGTACT 59.678 47.826 2.84 0.00 0.00 2.73
178 179 4.559704 GCACTGGTGGAGCTATATGTACTC 60.560 50.000 2.84 0.00 0.00 2.59
179 180 3.821600 ACTGGTGGAGCTATATGTACTCG 59.178 47.826 0.00 0.00 0.00 4.18
180 181 3.821600 CTGGTGGAGCTATATGTACTCGT 59.178 47.826 0.00 0.00 0.00 4.18
181 182 3.568430 TGGTGGAGCTATATGTACTCGTG 59.432 47.826 0.00 0.00 0.00 4.35
182 183 3.566523 GTGGAGCTATATGTACTCGTGC 58.433 50.000 0.00 0.00 0.00 5.34
183 184 3.004419 GTGGAGCTATATGTACTCGTGCA 59.996 47.826 0.00 0.00 0.00 4.57
184 185 3.826729 TGGAGCTATATGTACTCGTGCAT 59.173 43.478 5.95 5.95 39.25 3.96
185 186 4.169508 GGAGCTATATGTACTCGTGCATG 58.830 47.826 10.31 0.00 36.59 4.06
186 187 4.169508 GAGCTATATGTACTCGTGCATGG 58.830 47.826 5.98 0.00 36.59 3.66
187 188 3.056536 AGCTATATGTACTCGTGCATGGG 60.057 47.826 3.61 3.61 36.59 4.00
188 189 2.169832 ATATGTACTCGTGCATGGGC 57.830 50.000 5.46 0.00 36.59 5.36
189 190 0.105964 TATGTACTCGTGCATGGGCC 59.894 55.000 5.46 0.00 40.13 5.80
190 191 1.909459 ATGTACTCGTGCATGGGCCA 61.909 55.000 9.61 9.61 40.13 5.36
191 192 1.153168 GTACTCGTGCATGGGCCAT 60.153 57.895 14.78 14.78 40.13 4.40
192 193 0.105964 GTACTCGTGCATGGGCCATA 59.894 55.000 20.73 0.71 40.13 2.74
193 194 0.833949 TACTCGTGCATGGGCCATAA 59.166 50.000 20.73 7.93 40.13 1.90
194 195 0.183492 ACTCGTGCATGGGCCATAAT 59.817 50.000 20.73 0.00 40.13 1.28
195 196 0.877071 CTCGTGCATGGGCCATAATC 59.123 55.000 20.73 11.85 40.13 1.75
196 197 0.537143 TCGTGCATGGGCCATAATCC 60.537 55.000 20.73 8.59 40.13 3.01
197 198 1.526575 CGTGCATGGGCCATAATCCC 61.527 60.000 20.73 6.06 44.17 3.85
198 199 1.155859 TGCATGGGCCATAATCCCC 59.844 57.895 20.73 4.28 43.24 4.81
199 200 1.610379 GCATGGGCCATAATCCCCC 60.610 63.158 20.73 0.00 43.24 5.40
201 202 4.213591 TGGGCCATAATCCCCCAA 57.786 55.556 0.00 0.00 45.48 4.12
202 203 1.623625 TGGGCCATAATCCCCCAAC 59.376 57.895 0.00 0.00 45.48 3.77
203 204 1.152333 GGGCCATAATCCCCCAACC 60.152 63.158 4.39 0.00 38.70 3.77
204 205 1.664956 GGGCCATAATCCCCCAACCT 61.665 60.000 4.39 0.00 38.70 3.50
205 206 0.264657 GGCCATAATCCCCCAACCTT 59.735 55.000 0.00 0.00 0.00 3.50
206 207 1.501604 GGCCATAATCCCCCAACCTTA 59.498 52.381 0.00 0.00 0.00 2.69
207 208 2.490902 GGCCATAATCCCCCAACCTTAG 60.491 54.545 0.00 0.00 0.00 2.18
208 209 2.876581 CCATAATCCCCCAACCTTAGC 58.123 52.381 0.00 0.00 0.00 3.09
209 210 2.176798 CCATAATCCCCCAACCTTAGCA 59.823 50.000 0.00 0.00 0.00 3.49
210 211 3.373658 CCATAATCCCCCAACCTTAGCAA 60.374 47.826 0.00 0.00 0.00 3.91
211 212 4.285863 CATAATCCCCCAACCTTAGCAAA 58.714 43.478 0.00 0.00 0.00 3.68
212 213 3.268034 AATCCCCCAACCTTAGCAAAA 57.732 42.857 0.00 0.00 0.00 2.44
213 214 3.490060 ATCCCCCAACCTTAGCAAAAT 57.510 42.857 0.00 0.00 0.00 1.82
214 215 2.534990 TCCCCCAACCTTAGCAAAATG 58.465 47.619 0.00 0.00 0.00 2.32
215 216 2.158234 TCCCCCAACCTTAGCAAAATGT 60.158 45.455 0.00 0.00 0.00 2.71
216 217 2.233676 CCCCCAACCTTAGCAAAATGTC 59.766 50.000 0.00 0.00 0.00 3.06
217 218 2.233676 CCCCAACCTTAGCAAAATGTCC 59.766 50.000 0.00 0.00 0.00 4.02
218 219 2.094752 CCCAACCTTAGCAAAATGTCCG 60.095 50.000 0.00 0.00 0.00 4.79
219 220 2.817258 CCAACCTTAGCAAAATGTCCGA 59.183 45.455 0.00 0.00 0.00 4.55
220 221 3.254657 CCAACCTTAGCAAAATGTCCGAA 59.745 43.478 0.00 0.00 0.00 4.30
221 222 4.475944 CAACCTTAGCAAAATGTCCGAAG 58.524 43.478 0.00 0.00 0.00 3.79
222 223 4.015872 ACCTTAGCAAAATGTCCGAAGA 57.984 40.909 0.00 0.00 0.00 2.87
223 224 4.394729 ACCTTAGCAAAATGTCCGAAGAA 58.605 39.130 0.00 0.00 0.00 2.52
224 225 5.010282 ACCTTAGCAAAATGTCCGAAGAAT 58.990 37.500 0.00 0.00 0.00 2.40
225 226 5.476945 ACCTTAGCAAAATGTCCGAAGAATT 59.523 36.000 0.00 0.00 0.00 2.17
226 227 6.015434 ACCTTAGCAAAATGTCCGAAGAATTT 60.015 34.615 0.00 0.00 0.00 1.82
227 228 6.868339 CCTTAGCAAAATGTCCGAAGAATTTT 59.132 34.615 0.00 0.00 0.00 1.82
228 229 7.384932 CCTTAGCAAAATGTCCGAAGAATTTTT 59.615 33.333 0.00 0.00 0.00 1.94
252 253 9.787435 TTTTATTGAAGGTGCTTAGTTAGAAGA 57.213 29.630 0.00 0.00 0.00 2.87
253 254 9.787435 TTTATTGAAGGTGCTTAGTTAGAAGAA 57.213 29.630 0.00 0.00 0.00 2.52
254 255 7.913674 ATTGAAGGTGCTTAGTTAGAAGAAG 57.086 36.000 0.00 0.00 0.00 2.85
255 256 6.420913 TGAAGGTGCTTAGTTAGAAGAAGT 57.579 37.500 0.00 0.00 0.00 3.01
256 257 7.534723 TGAAGGTGCTTAGTTAGAAGAAGTA 57.465 36.000 0.00 0.00 0.00 2.24
257 258 8.135382 TGAAGGTGCTTAGTTAGAAGAAGTAT 57.865 34.615 0.00 0.00 0.00 2.12
258 259 9.251440 TGAAGGTGCTTAGTTAGAAGAAGTATA 57.749 33.333 0.00 0.00 0.00 1.47
259 260 9.738832 GAAGGTGCTTAGTTAGAAGAAGTATAG 57.261 37.037 0.00 0.00 0.00 1.31
260 261 8.826293 AGGTGCTTAGTTAGAAGAAGTATAGT 57.174 34.615 0.00 0.00 0.00 2.12
261 262 8.905850 AGGTGCTTAGTTAGAAGAAGTATAGTC 58.094 37.037 0.00 0.00 0.00 2.59
262 263 8.905850 GGTGCTTAGTTAGAAGAAGTATAGTCT 58.094 37.037 0.00 0.00 0.00 3.24
268 269 8.135382 AGTTAGAAGAAGTATAGTCTTTGGCA 57.865 34.615 1.17 0.00 35.46 4.92
269 270 8.035984 AGTTAGAAGAAGTATAGTCTTTGGCAC 58.964 37.037 0.00 0.00 35.46 5.01
270 271 5.735766 AGAAGAAGTATAGTCTTTGGCACC 58.264 41.667 0.00 0.00 35.46 5.01
271 272 4.489306 AGAAGTATAGTCTTTGGCACCC 57.511 45.455 0.00 0.00 0.00 4.61
272 273 4.104831 AGAAGTATAGTCTTTGGCACCCT 58.895 43.478 0.00 0.00 0.00 4.34
273 274 4.162509 AGAAGTATAGTCTTTGGCACCCTC 59.837 45.833 0.00 0.00 0.00 4.30
274 275 3.450904 AGTATAGTCTTTGGCACCCTCA 58.549 45.455 0.00 0.00 0.00 3.86
275 276 3.452627 AGTATAGTCTTTGGCACCCTCAG 59.547 47.826 0.00 0.00 0.00 3.35
276 277 2.024176 TAGTCTTTGGCACCCTCAGA 57.976 50.000 0.00 0.00 0.00 3.27
277 278 0.689623 AGTCTTTGGCACCCTCAGAG 59.310 55.000 0.00 0.00 0.00 3.35
278 279 0.687354 GTCTTTGGCACCCTCAGAGA 59.313 55.000 0.00 0.00 0.00 3.10
279 280 1.280421 GTCTTTGGCACCCTCAGAGAT 59.720 52.381 0.00 0.00 29.99 2.75
280 281 2.501723 GTCTTTGGCACCCTCAGAGATA 59.498 50.000 0.00 0.00 29.99 1.98
281 282 2.768527 TCTTTGGCACCCTCAGAGATAG 59.231 50.000 0.00 0.00 0.00 2.08
282 283 2.550277 TTGGCACCCTCAGAGATAGA 57.450 50.000 0.00 0.00 0.00 1.98
283 284 2.783379 TGGCACCCTCAGAGATAGAT 57.217 50.000 0.00 0.00 0.00 1.98
284 285 3.903530 TGGCACCCTCAGAGATAGATA 57.096 47.619 0.00 0.00 0.00 1.98
285 286 4.410481 TGGCACCCTCAGAGATAGATAT 57.590 45.455 0.00 0.00 0.00 1.63
286 287 5.536497 TGGCACCCTCAGAGATAGATATA 57.464 43.478 0.00 0.00 0.00 0.86
287 288 6.097439 TGGCACCCTCAGAGATAGATATAT 57.903 41.667 0.00 0.00 0.00 0.86
288 289 6.506661 TGGCACCCTCAGAGATAGATATATT 58.493 40.000 0.00 0.00 0.00 1.28
289 290 6.962311 TGGCACCCTCAGAGATAGATATATTT 59.038 38.462 0.00 0.00 0.00 1.40
290 291 7.093156 TGGCACCCTCAGAGATAGATATATTTG 60.093 40.741 0.00 0.00 0.00 2.32
291 292 6.760770 GCACCCTCAGAGATAGATATATTTGC 59.239 42.308 0.00 0.00 0.00 3.68
292 293 7.271511 CACCCTCAGAGATAGATATATTTGCC 58.728 42.308 0.00 0.00 0.00 4.52
293 294 7.125507 CACCCTCAGAGATAGATATATTTGCCT 59.874 40.741 0.00 0.00 0.00 4.75
294 295 7.682028 ACCCTCAGAGATAGATATATTTGCCTT 59.318 37.037 0.00 0.00 0.00 4.35
295 296 8.547173 CCCTCAGAGATAGATATATTTGCCTTT 58.453 37.037 0.00 0.00 0.00 3.11
296 297 9.956640 CCTCAGAGATAGATATATTTGCCTTTT 57.043 33.333 0.00 0.00 0.00 2.27
298 299 9.224267 TCAGAGATAGATATATTTGCCTTTTGC 57.776 33.333 0.00 0.00 41.77 3.68
299 300 8.457261 CAGAGATAGATATATTTGCCTTTTGCC 58.543 37.037 0.00 0.00 40.16 4.52
300 301 7.613411 AGAGATAGATATATTTGCCTTTTGCCC 59.387 37.037 0.00 0.00 40.16 5.36
301 302 6.665248 AGATAGATATATTTGCCTTTTGCCCC 59.335 38.462 0.00 0.00 40.16 5.80
302 303 4.819610 AGATATATTTGCCTTTTGCCCCT 58.180 39.130 0.00 0.00 40.16 4.79
303 304 4.835056 AGATATATTTGCCTTTTGCCCCTC 59.165 41.667 0.00 0.00 40.16 4.30
304 305 1.567357 TATTTGCCTTTTGCCCCTCC 58.433 50.000 0.00 0.00 40.16 4.30
305 306 0.473501 ATTTGCCTTTTGCCCCTCCA 60.474 50.000 0.00 0.00 40.16 3.86
306 307 1.120795 TTTGCCTTTTGCCCCTCCAG 61.121 55.000 0.00 0.00 40.16 3.86
307 308 3.385384 GCCTTTTGCCCCTCCAGC 61.385 66.667 0.00 0.00 0.00 4.85
308 309 2.118076 CCTTTTGCCCCTCCAGCA 59.882 61.111 0.00 0.00 38.81 4.41
309 310 1.305549 CCTTTTGCCCCTCCAGCAT 60.306 57.895 0.00 0.00 40.59 3.79
310 311 0.906282 CCTTTTGCCCCTCCAGCATT 60.906 55.000 0.00 0.00 40.59 3.56
311 312 0.978907 CTTTTGCCCCTCCAGCATTT 59.021 50.000 0.00 0.00 40.59 2.32
312 313 0.975887 TTTTGCCCCTCCAGCATTTC 59.024 50.000 0.00 0.00 40.59 2.17
313 314 0.904394 TTTGCCCCTCCAGCATTTCC 60.904 55.000 0.00 0.00 40.59 3.13
314 315 2.091640 TTGCCCCTCCAGCATTTCCA 62.092 55.000 0.00 0.00 40.59 3.53
315 316 1.755783 GCCCCTCCAGCATTTCCAG 60.756 63.158 0.00 0.00 0.00 3.86
316 317 1.693640 CCCCTCCAGCATTTCCAGT 59.306 57.895 0.00 0.00 0.00 4.00
317 318 0.394899 CCCCTCCAGCATTTCCAGTC 60.395 60.000 0.00 0.00 0.00 3.51
318 319 0.622665 CCCTCCAGCATTTCCAGTCT 59.377 55.000 0.00 0.00 0.00 3.24
319 320 1.839994 CCCTCCAGCATTTCCAGTCTA 59.160 52.381 0.00 0.00 0.00 2.59
320 321 2.158842 CCCTCCAGCATTTCCAGTCTAG 60.159 54.545 0.00 0.00 0.00 2.43
321 322 2.559440 CTCCAGCATTTCCAGTCTAGC 58.441 52.381 0.00 0.00 0.00 3.42
322 323 2.170187 CTCCAGCATTTCCAGTCTAGCT 59.830 50.000 0.00 0.00 0.00 3.32
323 324 2.169352 TCCAGCATTTCCAGTCTAGCTC 59.831 50.000 0.00 0.00 0.00 4.09
324 325 2.559440 CAGCATTTCCAGTCTAGCTCC 58.441 52.381 0.00 0.00 0.00 4.70
325 326 1.137872 AGCATTTCCAGTCTAGCTCCG 59.862 52.381 0.00 0.00 0.00 4.63
326 327 1.576356 CATTTCCAGTCTAGCTCCGC 58.424 55.000 0.00 0.00 0.00 5.54
327 328 0.466124 ATTTCCAGTCTAGCTCCGCC 59.534 55.000 0.00 0.00 0.00 6.13
328 329 0.902984 TTTCCAGTCTAGCTCCGCCA 60.903 55.000 0.00 0.00 0.00 5.69
329 330 1.605058 TTCCAGTCTAGCTCCGCCAC 61.605 60.000 0.00 0.00 0.00 5.01
330 331 2.055042 CCAGTCTAGCTCCGCCACT 61.055 63.158 0.00 0.00 0.00 4.00
331 332 1.140589 CAGTCTAGCTCCGCCACTG 59.859 63.158 0.00 0.00 0.00 3.66
332 333 2.055042 AGTCTAGCTCCGCCACTGG 61.055 63.158 0.00 0.00 0.00 4.00
333 334 2.037367 TCTAGCTCCGCCACTGGT 59.963 61.111 0.00 0.00 0.00 4.00
334 335 1.609501 TCTAGCTCCGCCACTGGTT 60.610 57.895 0.00 0.00 0.00 3.67
335 336 1.448540 CTAGCTCCGCCACTGGTTG 60.449 63.158 0.00 0.00 0.00 3.77
414 415 2.758327 ATGGAGGTGTAGCGGCGA 60.758 61.111 12.98 0.00 0.00 5.54
417 418 2.260434 GAGGTGTAGCGGCGACAA 59.740 61.111 17.43 0.00 0.00 3.18
434 435 1.958579 ACAATATGCAGATGCGCCAAT 59.041 42.857 4.18 0.00 45.83 3.16
437 438 1.174078 TATGCAGATGCGCCAATGGG 61.174 55.000 4.18 0.00 45.83 4.00
466 467 6.220726 TCTTGGATCATCGACAATTGTCTA 57.779 37.500 30.45 23.02 42.66 2.59
487 488 1.349026 CCCTGGCATGAAGTATCCGAT 59.651 52.381 0.00 0.00 0.00 4.18
506 507 0.913934 TATCACTGGGGGCTCTTGCA 60.914 55.000 0.00 0.00 41.91 4.08
509 510 3.145551 CTGGGGGCTCTTGCATGC 61.146 66.667 11.82 11.82 41.91 4.06
581 592 3.992643 TGGAAGCAAAACATGGACAATG 58.007 40.909 0.00 0.00 42.48 2.82
596 607 3.826157 GGACAATGTCAAAGATGGTTCCA 59.174 43.478 15.86 0.00 33.68 3.53
598 609 4.473444 ACAATGTCAAAGATGGTTCCAGT 58.527 39.130 0.00 0.00 0.00 4.00
600 611 3.576078 TGTCAAAGATGGTTCCAGTGT 57.424 42.857 0.00 0.00 0.00 3.55
674 685 1.003223 GTTGTTCGGTTGGGTTCGAAG 60.003 52.381 0.00 0.00 44.43 3.79
677 688 0.180878 TTCGGTTGGGTTCGAAGGTT 59.819 50.000 0.00 0.00 39.94 3.50
687 698 2.616842 GGTTCGAAGGTTGAGCTTCAAA 59.383 45.455 19.36 7.76 38.22 2.69
708 719 8.856490 TCAAATTTTGAAGCTCTAGTTTTGTC 57.144 30.769 9.36 0.00 36.59 3.18
709 720 7.643764 TCAAATTTTGAAGCTCTAGTTTTGTCG 59.356 33.333 9.36 0.00 36.59 4.35
712 723 6.861065 TTTGAAGCTCTAGTTTTGTCGAAT 57.139 33.333 0.00 0.00 0.00 3.34
733 745 0.810648 TGCCGCTTTGCTTGATTAGG 59.189 50.000 0.00 0.00 0.00 2.69
752 764 1.205417 GGGTCATCATTTGTGGCTTGG 59.795 52.381 0.00 0.00 0.00 3.61
757 769 5.343249 GTCATCATTTGTGGCTTGGTAATC 58.657 41.667 0.00 0.00 0.00 1.75
782 794 6.044404 CCCTATGACCCAACTTGTATTCCTAT 59.956 42.308 0.00 0.00 0.00 2.57
786 798 4.519906 CCCAACTTGTATTCCTATGGGT 57.480 45.455 0.00 0.00 40.89 4.51
813 825 2.323939 TCGCGCAATAAAAGTGTTGG 57.676 45.000 8.75 0.00 0.00 3.77
814 826 0.707822 CGCGCAATAAAAGTGTTGGC 59.292 50.000 8.75 0.00 0.00 4.52
822 834 2.463047 AAAAGTGTTGGCAACCCCTA 57.537 45.000 26.31 5.95 0.00 3.53
855 867 7.038154 TGCATATACTCCTTTTTACCAATGC 57.962 36.000 0.00 0.00 37.19 3.56
925 940 1.067821 GACATCCGCTCCTTAGTCCTG 59.932 57.143 0.00 0.00 0.00 3.86
929 944 1.217183 TCCGCTCCTTAGTCCTGGTAT 59.783 52.381 0.00 0.00 0.00 2.73
1134 1152 3.637229 TCCAAATCGATGACCTCCTCTAC 59.363 47.826 0.00 0.00 0.00 2.59
1142 1160 1.076192 ACCTCCTCTACGGCCGAAT 60.076 57.895 35.90 13.91 0.00 3.34
1148 1166 2.280186 CTACGGCCGAATCCAGCC 60.280 66.667 35.90 0.00 46.17 4.85
1958 1976 4.659172 TGGAAGGCCGCCAAGGTG 62.659 66.667 16.82 0.00 43.70 4.00
2129 2147 4.152402 CCGGTGAGTACTCTTCATGTTTTG 59.848 45.833 23.01 2.54 0.00 2.44
2216 2234 4.024670 GGTGTCTACCATCCAGTAAGTCT 58.975 47.826 0.00 0.00 46.71 3.24
2267 2285 9.256477 CTTCTAACGATTGCCAAACTATATACA 57.744 33.333 0.00 0.00 0.00 2.29
2298 2316 9.063615 CAGATCATGGATTCTATTCATGTTCAA 57.936 33.333 15.99 0.00 38.80 2.69
2299 2317 9.286170 AGATCATGGATTCTATTCATGTTCAAG 57.714 33.333 15.99 0.00 38.80 3.02
2325 2346 3.304559 GCGCATGATAGGATCGTAATGTC 59.695 47.826 0.30 0.00 0.00 3.06
2391 2412 4.298103 AGAGATGGCAGATTCAGTTGTT 57.702 40.909 0.00 0.00 0.00 2.83
2392 2413 5.426689 AGAGATGGCAGATTCAGTTGTTA 57.573 39.130 0.00 0.00 0.00 2.41
2393 2414 5.181748 AGAGATGGCAGATTCAGTTGTTAC 58.818 41.667 0.00 0.00 0.00 2.50
2394 2415 5.046014 AGAGATGGCAGATTCAGTTGTTACT 60.046 40.000 0.00 0.00 34.00 2.24
2395 2416 6.155221 AGAGATGGCAGATTCAGTTGTTACTA 59.845 38.462 0.00 0.00 31.96 1.82
2396 2417 6.109359 AGATGGCAGATTCAGTTGTTACTAC 58.891 40.000 0.00 0.00 31.96 2.73
2397 2418 5.222079 TGGCAGATTCAGTTGTTACTACA 57.778 39.130 0.00 0.00 31.96 2.74
2398 2419 4.994852 TGGCAGATTCAGTTGTTACTACAC 59.005 41.667 0.00 0.00 32.98 2.90
2399 2420 4.392138 GGCAGATTCAGTTGTTACTACACC 59.608 45.833 0.00 0.00 32.98 4.16
2400 2421 4.392138 GCAGATTCAGTTGTTACTACACCC 59.608 45.833 0.00 0.00 32.98 4.61
2401 2422 5.794894 CAGATTCAGTTGTTACTACACCCT 58.205 41.667 0.00 0.00 32.98 4.34
2402 2423 5.869888 CAGATTCAGTTGTTACTACACCCTC 59.130 44.000 0.00 0.00 32.98 4.30
2403 2424 4.612264 TTCAGTTGTTACTACACCCTCC 57.388 45.455 0.00 0.00 32.98 4.30
2404 2425 2.559668 TCAGTTGTTACTACACCCTCCG 59.440 50.000 0.00 0.00 32.98 4.63
2405 2426 2.298163 CAGTTGTTACTACACCCTCCGT 59.702 50.000 0.00 0.00 32.98 4.69
2406 2427 2.967887 AGTTGTTACTACACCCTCCGTT 59.032 45.455 0.00 0.00 32.98 4.44
2407 2428 3.006217 AGTTGTTACTACACCCTCCGTTC 59.994 47.826 0.00 0.00 32.98 3.95
2408 2429 1.895131 TGTTACTACACCCTCCGTTCC 59.105 52.381 0.00 0.00 0.00 3.62
2409 2430 1.895131 GTTACTACACCCTCCGTTCCA 59.105 52.381 0.00 0.00 0.00 3.53
2410 2431 2.299867 GTTACTACACCCTCCGTTCCAA 59.700 50.000 0.00 0.00 0.00 3.53
2411 2432 1.426751 ACTACACCCTCCGTTCCAAA 58.573 50.000 0.00 0.00 0.00 3.28
2412 2433 1.770061 ACTACACCCTCCGTTCCAAAA 59.230 47.619 0.00 0.00 0.00 2.44
2413 2434 2.374170 ACTACACCCTCCGTTCCAAAAT 59.626 45.455 0.00 0.00 0.00 1.82
2414 2435 3.583966 ACTACACCCTCCGTTCCAAAATA 59.416 43.478 0.00 0.00 0.00 1.40
2415 2436 3.067684 ACACCCTCCGTTCCAAAATAG 57.932 47.619 0.00 0.00 0.00 1.73
2416 2437 2.640826 ACACCCTCCGTTCCAAAATAGA 59.359 45.455 0.00 0.00 0.00 1.98
2417 2438 3.265995 ACACCCTCCGTTCCAAAATAGAT 59.734 43.478 0.00 0.00 0.00 1.98
2418 2439 3.627577 CACCCTCCGTTCCAAAATAGATG 59.372 47.826 0.00 0.00 0.00 2.90
2419 2440 3.521937 ACCCTCCGTTCCAAAATAGATGA 59.478 43.478 0.00 0.00 0.00 2.92
2420 2441 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
2421 2442 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
2422 2443 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
2423 2444 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
2424 2445 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
2425 2446 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
2426 2447 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
2427 2448 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
2428 2449 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
2429 2450 8.717821 CGTTCCAAAATAGATGACTCAACTTTA 58.282 33.333 0.00 0.00 0.00 1.85
2479 2500 4.694037 GGTGTTCTAAAGTTCTAATGCCGT 59.306 41.667 0.00 0.00 0.00 5.68
2518 2541 5.555017 ACTCATTTGCTTGTGTCTCTATGT 58.445 37.500 0.00 0.00 0.00 2.29
2533 2556 1.368345 TATGTGCGACCTGTGCATGC 61.368 55.000 11.82 11.82 45.34 4.06
2622 2645 9.760660 GGATAATTTGATATATTGACGTGCTTC 57.239 33.333 0.00 0.00 0.00 3.86
2631 2654 0.038892 TGACGTGCTTCGGTAACTCC 60.039 55.000 0.00 0.00 44.69 3.85
2634 2659 1.820519 ACGTGCTTCGGTAACTCCATA 59.179 47.619 0.00 0.00 44.69 2.74
2660 2685 8.780846 TGTGTTTATAAATCATACAAGTCCGT 57.219 30.769 0.31 0.00 0.00 4.69
2670 2695 2.713863 ACAAGTCCGTTGGTTTGGTA 57.286 45.000 7.41 0.00 40.90 3.25
2810 2838 2.045340 GGGGTGGGTTGGATGTCG 60.045 66.667 0.00 0.00 0.00 4.35
2828 2856 0.791610 CGCGCGTATTTGGTGTTTCC 60.792 55.000 24.19 0.00 0.00 3.13
2831 2859 0.455464 GCGTATTTGGTGTTTCCGGC 60.455 55.000 0.00 0.00 39.52 6.13
2895 2923 9.440773 TCTTATGCTGGATTATGTTATCATGTC 57.559 33.333 0.00 0.00 35.70 3.06
3050 3079 8.908786 ACTGTTCTTTGAAGTTGAATCAGATA 57.091 30.769 0.00 0.00 0.00 1.98
3121 3150 5.669477 AGAATGGCTTAATCTCTGACTCAC 58.331 41.667 0.00 0.00 0.00 3.51
3125 3154 4.284490 TGGCTTAATCTCTGACTCACTGTT 59.716 41.667 0.00 0.00 0.00 3.16
3129 3158 7.261325 GCTTAATCTCTGACTCACTGTTGATA 58.739 38.462 0.00 0.00 0.00 2.15
3132 3161 9.996554 TTAATCTCTGACTCACTGTTGATAAAA 57.003 29.630 0.00 0.00 0.00 1.52
3133 3162 8.545229 AATCTCTGACTCACTGTTGATAAAAG 57.455 34.615 0.00 0.00 0.00 2.27
3134 3163 6.459066 TCTCTGACTCACTGTTGATAAAAGG 58.541 40.000 0.00 0.00 0.00 3.11
3135 3164 5.551233 TCTGACTCACTGTTGATAAAAGGG 58.449 41.667 0.00 0.00 0.00 3.95
3136 3165 4.651778 TGACTCACTGTTGATAAAAGGGG 58.348 43.478 0.00 0.00 0.00 4.79
3137 3166 4.349636 TGACTCACTGTTGATAAAAGGGGA 59.650 41.667 0.00 0.00 0.00 4.81
3138 3167 5.014123 TGACTCACTGTTGATAAAAGGGGAT 59.986 40.000 0.00 0.00 0.00 3.85
3139 3168 6.214615 TGACTCACTGTTGATAAAAGGGGATA 59.785 38.462 0.00 0.00 0.00 2.59
3140 3169 7.092444 TGACTCACTGTTGATAAAAGGGGATAT 60.092 37.037 0.00 0.00 0.00 1.63
3141 3170 7.283329 ACTCACTGTTGATAAAAGGGGATATC 58.717 38.462 0.00 0.00 0.00 1.63
3142 3171 7.092444 ACTCACTGTTGATAAAAGGGGATATCA 60.092 37.037 4.83 0.00 36.89 2.15
3143 3172 7.282585 TCACTGTTGATAAAAGGGGATATCAG 58.717 38.462 4.83 0.00 39.12 2.90
3144 3173 7.056635 CACTGTTGATAAAAGGGGATATCAGT 58.943 38.462 4.83 0.00 39.12 3.41
3145 3174 7.227512 CACTGTTGATAAAAGGGGATATCAGTC 59.772 40.741 4.83 0.00 39.12 3.51
3146 3175 7.092444 ACTGTTGATAAAAGGGGATATCAGTCA 60.092 37.037 4.83 0.00 39.12 3.41
3147 3176 7.054124 TGTTGATAAAAGGGGATATCAGTCAC 58.946 38.462 4.83 0.00 39.12 3.67
3148 3177 6.823286 TGATAAAAGGGGATATCAGTCACA 57.177 37.500 4.83 0.00 34.48 3.58
3149 3178 7.206789 TGATAAAAGGGGATATCAGTCACAA 57.793 36.000 4.83 0.00 34.48 3.33
3150 3179 7.054124 TGATAAAAGGGGATATCAGTCACAAC 58.946 38.462 4.83 0.00 34.48 3.32
3151 3180 5.520748 AAAAGGGGATATCAGTCACAACT 57.479 39.130 4.83 0.00 35.60 3.16
3152 3181 5.520748 AAAGGGGATATCAGTCACAACTT 57.479 39.130 4.83 0.00 31.71 2.66
3281 3310 0.329261 TTTGACAGCCTGCTATGCCT 59.671 50.000 0.00 0.00 0.00 4.75
3348 3377 5.419155 AGAACAGTACAGCTTGTATCTAGCA 59.581 40.000 0.00 0.00 41.11 3.49
3365 3394 0.602905 GCACCTGCGGTTAGAGTTGT 60.603 55.000 0.00 0.00 31.02 3.32
3405 3434 3.329520 ACCCAAGTAAACATACAGGCTCA 59.670 43.478 0.00 0.00 0.00 4.26
3450 3479 8.153479 AGCGATAATATCATTTTTGTGTGCTA 57.847 30.769 0.87 0.00 0.00 3.49
3452 3481 9.398170 GCGATAATATCATTTTTGTGTGCTAAT 57.602 29.630 0.87 0.00 0.00 1.73
3511 3540 3.599343 TGATGCTTCAATTCGCTACTGT 58.401 40.909 0.00 0.00 0.00 3.55
3538 3627 1.554042 CGTGTCGTGTTTAGCGGCTT 61.554 55.000 8.26 0.00 34.76 4.35
3560 3649 0.458370 CCGCAAAGCCATTTAGGTGC 60.458 55.000 0.00 0.00 40.61 5.01
3733 3822 1.027357 GGTATTGTGGCTGCCTCATG 58.973 55.000 22.58 0.00 0.00 3.07
3771 3860 3.319137 TGAGCACGAGATAAGCTTTGT 57.681 42.857 3.20 0.00 39.02 2.83
3793 3882 9.926158 TTTGTGGTTAATCTACGTGTTAAGATA 57.074 29.630 0.00 0.00 32.17 1.98
3825 3914 9.765795 ATAGTGAATGAAAGTGTATTAGTAGCC 57.234 33.333 0.00 0.00 0.00 3.93
3924 4015 4.335416 CATGTGTACTCCAGGGAAACATT 58.665 43.478 6.48 0.00 0.00 2.71
4012 4103 4.583871 ACCTGATCATTTCTCTGGTGTTC 58.416 43.478 0.00 0.00 41.67 3.18
4067 4158 6.237901 TGAGTTGCCTTTAGATGCTAAAGAA 58.762 36.000 22.09 10.91 36.84 2.52
4068 4159 6.714810 TGAGTTGCCTTTAGATGCTAAAGAAA 59.285 34.615 22.09 15.09 36.84 2.52
4069 4160 7.230510 TGAGTTGCCTTTAGATGCTAAAGAAAA 59.769 33.333 22.09 14.84 36.84 2.29
4073 4164 8.986477 TGCCTTTAGATGCTAAAGAAAATTTC 57.014 30.769 22.09 0.00 36.84 2.17
4118 4209 0.107831 AAGCTGCGAACCAGTACCAA 59.892 50.000 0.00 0.00 43.71 3.67
4122 4213 1.933853 CTGCGAACCAGTACCAATAGC 59.066 52.381 0.00 0.00 36.79 2.97
4336 4427 8.521170 TGGTCCCTACTAGATATAATGATTCG 57.479 38.462 0.00 0.00 0.00 3.34
4387 4478 6.324819 ACCTGCAATAATTTCATGTTCGAAG 58.675 36.000 0.00 0.00 0.00 3.79
4411 4502 5.151632 TGAACTTTTGCAACTTCGTCTAC 57.848 39.130 0.00 0.00 0.00 2.59
4414 4505 6.480651 TGAACTTTTGCAACTTCGTCTACATA 59.519 34.615 0.00 0.00 0.00 2.29
4581 4672 2.568509 AGAATTGACTGGGGGCAAAATG 59.431 45.455 0.00 0.00 0.00 2.32
4582 4673 2.028561 ATTGACTGGGGGCAAAATGT 57.971 45.000 0.00 0.00 0.00 2.71
4583 4674 1.799933 TTGACTGGGGGCAAAATGTT 58.200 45.000 0.00 0.00 0.00 2.71
4584 4675 1.047002 TGACTGGGGGCAAAATGTTG 58.953 50.000 0.00 0.00 37.83 3.33
4585 4676 1.047801 GACTGGGGGCAAAATGTTGT 58.952 50.000 0.00 0.00 37.06 3.32
4677 4768 8.621286 GTTTACTTTTGGAGAAAGAAGATGTCA 58.379 33.333 5.60 0.00 0.00 3.58
4683 4774 9.889128 TTTTGGAGAAAGAAGATGTCAATTTTT 57.111 25.926 0.00 0.00 0.00 1.94
4722 4813 3.944650 ACATACACATAAAGGCGCATTCA 59.055 39.130 8.15 0.00 0.00 2.57
4772 4863 2.746362 CAATTCTCCTCACAGAACCTGC 59.254 50.000 0.00 0.00 35.18 4.85
4850 4941 7.511959 AAGTTTTGTTGGAGAAGGATTAGAC 57.488 36.000 0.00 0.00 0.00 2.59
4925 5016 7.338800 ACTCACTGTTCAATTCAACATCTTT 57.661 32.000 0.00 0.00 35.70 2.52
4966 5061 6.323225 TGTTCTAAATGTAGGTAGGCTACTCC 59.677 42.308 23.01 8.77 0.00 3.85
4976 5071 2.614134 AGGCTACTCCTCTGTTCAGT 57.386 50.000 0.00 0.00 43.20 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.571816 TTTTATTCATGAATGGCCTTTCTTTTT 57.428 25.926 27.59 13.39 32.50 1.94
3 4 9.743581 ATTTTATTCATGAATGGCCTTTCTTTT 57.256 25.926 27.59 12.61 32.50 2.27
10 11 9.370930 TCTGAATATTTTATTCATGAATGGCCT 57.629 29.630 27.59 13.79 37.40 5.19
11 12 9.635520 CTCTGAATATTTTATTCATGAATGGCC 57.364 33.333 27.59 0.00 37.40 5.36
12 13 9.136952 GCTCTGAATATTTTATTCATGAATGGC 57.863 33.333 27.59 10.51 37.40 4.40
13 14 9.635520 GGCTCTGAATATTTTATTCATGAATGG 57.364 33.333 27.59 7.49 37.40 3.16
15 16 9.597681 AGGGCTCTGAATATTTTATTCATGAAT 57.402 29.630 23.75 23.75 37.40 2.57
19 20 8.964772 GCATAGGGCTCTGAATATTTTATTCAT 58.035 33.333 0.00 0.00 37.18 2.57
20 21 7.394359 GGCATAGGGCTCTGAATATTTTATTCA 59.606 37.037 0.00 9.05 44.01 2.57
21 22 7.394359 TGGCATAGGGCTCTGAATATTTTATTC 59.606 37.037 0.00 1.20 44.01 1.75
22 23 7.240897 TGGCATAGGGCTCTGAATATTTTATT 58.759 34.615 0.00 0.00 44.01 1.40
23 24 6.793478 TGGCATAGGGCTCTGAATATTTTAT 58.207 36.000 0.00 0.00 44.01 1.40
24 25 6.199557 TGGCATAGGGCTCTGAATATTTTA 57.800 37.500 0.00 0.00 44.01 1.52
25 26 5.065613 TGGCATAGGGCTCTGAATATTTT 57.934 39.130 0.00 0.00 44.01 1.82
26 27 4.729552 TGGCATAGGGCTCTGAATATTT 57.270 40.909 0.00 0.00 44.01 1.40
27 28 4.729552 TTGGCATAGGGCTCTGAATATT 57.270 40.909 0.00 0.00 44.01 1.28
28 29 4.942363 ATTGGCATAGGGCTCTGAATAT 57.058 40.909 0.00 0.00 44.01 1.28
29 30 6.443527 TGTATATTGGCATAGGGCTCTGAATA 59.556 38.462 0.00 0.00 44.01 1.75
30 31 4.942363 ATATTGGCATAGGGCTCTGAAT 57.058 40.909 0.00 0.00 44.01 2.57
31 32 4.597075 TGTATATTGGCATAGGGCTCTGAA 59.403 41.667 0.00 0.00 44.01 3.02
32 33 4.167319 TGTATATTGGCATAGGGCTCTGA 58.833 43.478 0.00 0.00 44.01 3.27
33 34 4.558226 TGTATATTGGCATAGGGCTCTG 57.442 45.455 0.00 0.00 44.01 3.35
34 35 4.537688 ACATGTATATTGGCATAGGGCTCT 59.462 41.667 0.00 0.00 44.01 4.09
35 36 4.848357 ACATGTATATTGGCATAGGGCTC 58.152 43.478 0.00 0.00 44.01 4.70
36 37 4.934797 ACATGTATATTGGCATAGGGCT 57.065 40.909 0.00 0.00 44.01 5.19
37 38 5.243730 ACAAACATGTATATTGGCATAGGGC 59.756 40.000 12.22 0.00 43.74 5.19
38 39 6.899393 ACAAACATGTATATTGGCATAGGG 57.101 37.500 12.22 0.00 0.00 3.53
39 40 7.939782 TGAACAAACATGTATATTGGCATAGG 58.060 34.615 12.22 0.00 0.00 2.57
40 41 9.236691 GTTGAACAAACATGTATATTGGCATAG 57.763 33.333 12.22 0.00 38.75 2.23
41 42 7.912773 CGTTGAACAAACATGTATATTGGCATA 59.087 33.333 12.22 1.69 38.84 3.14
42 43 6.751425 CGTTGAACAAACATGTATATTGGCAT 59.249 34.615 12.22 0.34 38.84 4.40
43 44 6.089476 CGTTGAACAAACATGTATATTGGCA 58.911 36.000 12.22 7.70 38.84 4.92
44 45 6.090129 ACGTTGAACAAACATGTATATTGGC 58.910 36.000 12.22 5.65 38.84 4.52
45 46 8.514136 AAACGTTGAACAAACATGTATATTGG 57.486 30.769 0.00 0.00 38.84 3.16
52 53 9.535270 CAAAAATAAAACGTTGAACAAACATGT 57.465 25.926 0.00 0.00 38.84 3.21
53 54 9.746711 TCAAAAATAAAACGTTGAACAAACATG 57.253 25.926 0.00 0.00 38.84 3.21
54 55 9.965748 CTCAAAAATAAAACGTTGAACAAACAT 57.034 25.926 0.00 0.00 38.84 2.71
55 56 7.952637 GCTCAAAAATAAAACGTTGAACAAACA 59.047 29.630 0.00 0.00 38.84 2.83
56 57 8.166066 AGCTCAAAAATAAAACGTTGAACAAAC 58.834 29.630 0.00 0.00 35.25 2.93
57 58 8.245701 AGCTCAAAAATAAAACGTTGAACAAA 57.754 26.923 0.00 0.00 30.03 2.83
58 59 7.820044 AGCTCAAAAATAAAACGTTGAACAA 57.180 28.000 0.00 0.00 30.03 2.83
59 60 7.670916 CAAGCTCAAAAATAAAACGTTGAACA 58.329 30.769 0.00 0.00 30.03 3.18
60 61 6.623353 GCAAGCTCAAAAATAAAACGTTGAAC 59.377 34.615 0.00 0.00 30.03 3.18
61 62 6.237969 GGCAAGCTCAAAAATAAAACGTTGAA 60.238 34.615 0.00 0.00 30.03 2.69
62 63 5.233263 GGCAAGCTCAAAAATAAAACGTTGA 59.767 36.000 0.00 0.00 0.00 3.18
63 64 5.006165 TGGCAAGCTCAAAAATAAAACGTTG 59.994 36.000 0.00 0.00 0.00 4.10
64 65 5.112686 TGGCAAGCTCAAAAATAAAACGTT 58.887 33.333 0.00 0.00 0.00 3.99
65 66 4.688021 TGGCAAGCTCAAAAATAAAACGT 58.312 34.783 0.00 0.00 0.00 3.99
66 67 5.006165 TGTTGGCAAGCTCAAAAATAAAACG 59.994 36.000 0.00 0.00 0.00 3.60
67 68 6.356757 TGTTGGCAAGCTCAAAAATAAAAC 57.643 33.333 0.00 0.00 0.00 2.43
68 69 6.765036 TCATGTTGGCAAGCTCAAAAATAAAA 59.235 30.769 0.00 0.00 0.00 1.52
69 70 6.286758 TCATGTTGGCAAGCTCAAAAATAAA 58.713 32.000 0.00 0.00 0.00 1.40
70 71 5.851720 TCATGTTGGCAAGCTCAAAAATAA 58.148 33.333 0.00 0.00 0.00 1.40
71 72 5.465532 TCATGTTGGCAAGCTCAAAAATA 57.534 34.783 0.00 0.00 0.00 1.40
72 73 4.339872 TCATGTTGGCAAGCTCAAAAAT 57.660 36.364 0.00 0.00 0.00 1.82
73 74 3.815856 TCATGTTGGCAAGCTCAAAAA 57.184 38.095 0.00 0.00 0.00 1.94
74 75 3.815856 TTCATGTTGGCAAGCTCAAAA 57.184 38.095 0.00 0.00 0.00 2.44
75 76 3.456280 GTTTCATGTTGGCAAGCTCAAA 58.544 40.909 0.00 0.00 0.00 2.69
76 77 2.224018 GGTTTCATGTTGGCAAGCTCAA 60.224 45.455 0.00 0.00 0.00 3.02
77 78 1.340889 GGTTTCATGTTGGCAAGCTCA 59.659 47.619 0.00 0.00 0.00 4.26
78 79 1.337167 GGGTTTCATGTTGGCAAGCTC 60.337 52.381 0.00 0.00 0.00 4.09
79 80 0.681175 GGGTTTCATGTTGGCAAGCT 59.319 50.000 0.00 0.00 0.00 3.74
80 81 0.320683 GGGGTTTCATGTTGGCAAGC 60.321 55.000 0.00 0.00 0.00 4.01
81 82 1.341080 AGGGGTTTCATGTTGGCAAG 58.659 50.000 0.00 0.00 0.00 4.01
82 83 2.109128 TCTAGGGGTTTCATGTTGGCAA 59.891 45.455 0.00 0.00 0.00 4.52
83 84 1.707989 TCTAGGGGTTTCATGTTGGCA 59.292 47.619 0.00 0.00 0.00 4.92
84 85 2.507407 TCTAGGGGTTTCATGTTGGC 57.493 50.000 0.00 0.00 0.00 4.52
85 86 2.755103 GCTTCTAGGGGTTTCATGTTGG 59.245 50.000 0.00 0.00 0.00 3.77
86 87 3.441572 CAGCTTCTAGGGGTTTCATGTTG 59.558 47.826 0.00 0.00 0.00 3.33
87 88 3.690460 CAGCTTCTAGGGGTTTCATGTT 58.310 45.455 0.00 0.00 0.00 2.71
88 89 2.619074 GCAGCTTCTAGGGGTTTCATGT 60.619 50.000 0.00 0.00 0.00 3.21
89 90 2.019984 GCAGCTTCTAGGGGTTTCATG 58.980 52.381 0.00 0.00 0.00 3.07
90 91 1.407437 CGCAGCTTCTAGGGGTTTCAT 60.407 52.381 0.00 0.00 0.00 2.57
91 92 0.036388 CGCAGCTTCTAGGGGTTTCA 60.036 55.000 0.00 0.00 0.00 2.69
92 93 0.744771 CCGCAGCTTCTAGGGGTTTC 60.745 60.000 0.00 0.00 33.55 2.78
93 94 1.299976 CCGCAGCTTCTAGGGGTTT 59.700 57.895 0.00 0.00 33.55 3.27
94 95 2.990479 CCGCAGCTTCTAGGGGTT 59.010 61.111 0.00 0.00 33.55 4.11
95 96 2.284699 ACCGCAGCTTCTAGGGGT 60.285 61.111 4.84 4.84 45.06 4.95
96 97 1.690219 ATGACCGCAGCTTCTAGGGG 61.690 60.000 3.60 3.60 42.95 4.79
97 98 0.531532 CATGACCGCAGCTTCTAGGG 60.532 60.000 0.00 0.00 0.00 3.53
98 99 1.156645 GCATGACCGCAGCTTCTAGG 61.157 60.000 0.00 0.00 0.00 3.02
99 100 1.156645 GGCATGACCGCAGCTTCTAG 61.157 60.000 0.00 0.00 0.00 2.43
100 101 1.153369 GGCATGACCGCAGCTTCTA 60.153 57.895 0.00 0.00 0.00 2.10
101 102 2.437359 GGCATGACCGCAGCTTCT 60.437 61.111 0.00 0.00 0.00 2.85
102 103 2.437359 AGGCATGACCGCAGCTTC 60.437 61.111 0.00 0.00 46.52 3.86
103 104 2.437359 GAGGCATGACCGCAGCTT 60.437 61.111 0.00 0.00 46.52 3.74
104 105 4.827087 CGAGGCATGACCGCAGCT 62.827 66.667 0.00 0.00 46.52 4.24
125 126 2.974435 TATAGATGGGGGCGTGGGCA 62.974 60.000 0.00 0.00 42.47 5.36
126 127 1.774894 TTATAGATGGGGGCGTGGGC 61.775 60.000 0.00 0.00 38.90 5.36
127 128 0.036306 GTTATAGATGGGGGCGTGGG 59.964 60.000 0.00 0.00 0.00 4.61
128 129 1.056660 AGTTATAGATGGGGGCGTGG 58.943 55.000 0.00 0.00 0.00 4.94
129 130 1.416401 ACAGTTATAGATGGGGGCGTG 59.584 52.381 0.00 0.00 0.00 5.34
130 131 1.802553 ACAGTTATAGATGGGGGCGT 58.197 50.000 0.00 0.00 0.00 5.68
131 132 2.494059 CAACAGTTATAGATGGGGGCG 58.506 52.381 0.00 0.00 0.00 6.13
132 133 2.441750 TCCAACAGTTATAGATGGGGGC 59.558 50.000 0.00 0.00 30.61 5.80
133 134 4.718961 CTTCCAACAGTTATAGATGGGGG 58.281 47.826 0.00 0.00 30.61 5.40
134 135 4.137543 GCTTCCAACAGTTATAGATGGGG 58.862 47.826 0.00 0.00 30.61 4.96
135 136 4.576463 GTGCTTCCAACAGTTATAGATGGG 59.424 45.833 0.00 0.00 30.61 4.00
136 137 5.295292 CAGTGCTTCCAACAGTTATAGATGG 59.705 44.000 0.00 0.00 0.00 3.51
137 138 5.295292 CCAGTGCTTCCAACAGTTATAGATG 59.705 44.000 0.00 0.00 0.00 2.90
138 139 5.045578 ACCAGTGCTTCCAACAGTTATAGAT 60.046 40.000 0.00 0.00 0.00 1.98
139 140 4.286032 ACCAGTGCTTCCAACAGTTATAGA 59.714 41.667 0.00 0.00 0.00 1.98
140 141 4.393062 CACCAGTGCTTCCAACAGTTATAG 59.607 45.833 0.00 0.00 0.00 1.31
141 142 4.323417 CACCAGTGCTTCCAACAGTTATA 58.677 43.478 0.00 0.00 0.00 0.98
142 143 3.149196 CACCAGTGCTTCCAACAGTTAT 58.851 45.455 0.00 0.00 0.00 1.89
143 144 2.571212 CACCAGTGCTTCCAACAGTTA 58.429 47.619 0.00 0.00 0.00 2.24
144 145 1.392589 CACCAGTGCTTCCAACAGTT 58.607 50.000 0.00 0.00 0.00 3.16
145 146 0.466189 CCACCAGTGCTTCCAACAGT 60.466 55.000 0.00 0.00 0.00 3.55
146 147 0.179020 TCCACCAGTGCTTCCAACAG 60.179 55.000 0.00 0.00 0.00 3.16
147 148 0.179020 CTCCACCAGTGCTTCCAACA 60.179 55.000 0.00 0.00 0.00 3.33
148 149 1.518903 GCTCCACCAGTGCTTCCAAC 61.519 60.000 0.00 0.00 32.10 3.77
149 150 1.228245 GCTCCACCAGTGCTTCCAA 60.228 57.895 0.00 0.00 32.10 3.53
150 151 0.835971 TAGCTCCACCAGTGCTTCCA 60.836 55.000 0.00 0.00 42.62 3.53
151 152 0.543749 ATAGCTCCACCAGTGCTTCC 59.456 55.000 0.00 0.00 42.62 3.46
152 153 3.181461 ACATATAGCTCCACCAGTGCTTC 60.181 47.826 0.00 0.00 42.62 3.86
153 154 2.774234 ACATATAGCTCCACCAGTGCTT 59.226 45.455 0.00 0.00 42.62 3.91
154 155 2.402564 ACATATAGCTCCACCAGTGCT 58.597 47.619 0.00 0.00 46.70 4.40
155 156 2.918712 ACATATAGCTCCACCAGTGC 57.081 50.000 0.00 0.00 35.13 4.40
156 157 4.320567 CGAGTACATATAGCTCCACCAGTG 60.321 50.000 0.00 0.00 0.00 3.66
157 158 3.821600 CGAGTACATATAGCTCCACCAGT 59.178 47.826 0.00 0.00 0.00 4.00
158 159 3.821600 ACGAGTACATATAGCTCCACCAG 59.178 47.826 0.00 0.00 0.00 4.00
159 160 3.568430 CACGAGTACATATAGCTCCACCA 59.432 47.826 0.00 0.00 0.00 4.17
160 161 3.612004 GCACGAGTACATATAGCTCCACC 60.612 52.174 0.00 0.00 0.00 4.61
161 162 3.004419 TGCACGAGTACATATAGCTCCAC 59.996 47.826 0.00 0.00 0.00 4.02
162 163 3.219281 TGCACGAGTACATATAGCTCCA 58.781 45.455 0.00 0.00 0.00 3.86
163 164 3.917329 TGCACGAGTACATATAGCTCC 57.083 47.619 0.00 0.00 0.00 4.70
164 165 4.169508 CCATGCACGAGTACATATAGCTC 58.830 47.826 0.00 0.00 0.00 4.09
165 166 3.056536 CCCATGCACGAGTACATATAGCT 60.057 47.826 0.00 0.00 0.00 3.32
166 167 3.254060 CCCATGCACGAGTACATATAGC 58.746 50.000 0.00 0.00 0.00 2.97
167 168 3.254060 GCCCATGCACGAGTACATATAG 58.746 50.000 0.00 0.00 37.47 1.31
168 169 2.028476 GGCCCATGCACGAGTACATATA 60.028 50.000 0.00 0.00 40.13 0.86
169 170 1.270839 GGCCCATGCACGAGTACATAT 60.271 52.381 0.00 0.00 40.13 1.78
170 171 0.105964 GGCCCATGCACGAGTACATA 59.894 55.000 0.00 0.00 40.13 2.29
171 172 1.153168 GGCCCATGCACGAGTACAT 60.153 57.895 0.00 0.00 40.13 2.29
172 173 1.909459 ATGGCCCATGCACGAGTACA 61.909 55.000 0.00 0.00 40.13 2.90
173 174 0.105964 TATGGCCCATGCACGAGTAC 59.894 55.000 6.46 0.00 40.13 2.73
174 175 0.833949 TTATGGCCCATGCACGAGTA 59.166 50.000 6.46 0.00 40.13 2.59
175 176 0.183492 ATTATGGCCCATGCACGAGT 59.817 50.000 6.46 0.00 40.13 4.18
176 177 0.877071 GATTATGGCCCATGCACGAG 59.123 55.000 6.46 0.00 40.13 4.18
177 178 0.537143 GGATTATGGCCCATGCACGA 60.537 55.000 6.46 0.00 40.13 4.35
178 179 1.526575 GGGATTATGGCCCATGCACG 61.527 60.000 6.46 0.00 45.31 5.34
179 180 2.354902 GGGATTATGGCCCATGCAC 58.645 57.895 6.46 0.00 45.31 4.57
180 181 4.950200 GGGATTATGGCCCATGCA 57.050 55.556 6.46 0.00 45.31 3.96
185 186 1.152333 GGTTGGGGGATTATGGCCC 60.152 63.158 0.00 0.00 45.25 5.80
186 187 0.264657 AAGGTTGGGGGATTATGGCC 59.735 55.000 0.00 0.00 0.00 5.36
187 188 2.876581 CTAAGGTTGGGGGATTATGGC 58.123 52.381 0.00 0.00 0.00 4.40
188 189 2.176798 TGCTAAGGTTGGGGGATTATGG 59.823 50.000 0.00 0.00 0.00 2.74
189 190 3.593442 TGCTAAGGTTGGGGGATTATG 57.407 47.619 0.00 0.00 0.00 1.90
190 191 4.618378 TTTGCTAAGGTTGGGGGATTAT 57.382 40.909 0.00 0.00 0.00 1.28
191 192 4.405756 TTTTGCTAAGGTTGGGGGATTA 57.594 40.909 0.00 0.00 0.00 1.75
192 193 3.268034 TTTTGCTAAGGTTGGGGGATT 57.732 42.857 0.00 0.00 0.00 3.01
193 194 3.106827 CATTTTGCTAAGGTTGGGGGAT 58.893 45.455 0.00 0.00 0.00 3.85
194 195 2.158234 ACATTTTGCTAAGGTTGGGGGA 60.158 45.455 0.00 0.00 0.00 4.81
195 196 2.233676 GACATTTTGCTAAGGTTGGGGG 59.766 50.000 0.00 0.00 0.00 5.40
196 197 2.233676 GGACATTTTGCTAAGGTTGGGG 59.766 50.000 0.00 0.00 0.00 4.96
197 198 2.094752 CGGACATTTTGCTAAGGTTGGG 60.095 50.000 0.00 0.00 0.00 4.12
198 199 2.817258 TCGGACATTTTGCTAAGGTTGG 59.183 45.455 0.00 0.00 0.00 3.77
199 200 4.215399 TCTTCGGACATTTTGCTAAGGTTG 59.785 41.667 0.00 0.00 0.00 3.77
200 201 4.394729 TCTTCGGACATTTTGCTAAGGTT 58.605 39.130 0.00 0.00 0.00 3.50
201 202 4.015872 TCTTCGGACATTTTGCTAAGGT 57.984 40.909 0.00 0.00 0.00 3.50
202 203 5.567138 ATTCTTCGGACATTTTGCTAAGG 57.433 39.130 0.00 0.00 0.00 2.69
203 204 7.873739 AAAATTCTTCGGACATTTTGCTAAG 57.126 32.000 2.49 0.00 30.91 2.18
226 227 9.787435 TCTTCTAACTAAGCACCTTCAATAAAA 57.213 29.630 0.00 0.00 0.00 1.52
227 228 9.787435 TTCTTCTAACTAAGCACCTTCAATAAA 57.213 29.630 0.00 0.00 0.00 1.40
228 229 9.436957 CTTCTTCTAACTAAGCACCTTCAATAA 57.563 33.333 0.00 0.00 0.00 1.40
229 230 8.594550 ACTTCTTCTAACTAAGCACCTTCAATA 58.405 33.333 0.00 0.00 0.00 1.90
230 231 7.454225 ACTTCTTCTAACTAAGCACCTTCAAT 58.546 34.615 0.00 0.00 0.00 2.57
231 232 6.827727 ACTTCTTCTAACTAAGCACCTTCAA 58.172 36.000 0.00 0.00 0.00 2.69
232 233 6.420913 ACTTCTTCTAACTAAGCACCTTCA 57.579 37.500 0.00 0.00 0.00 3.02
233 234 9.738832 CTATACTTCTTCTAACTAAGCACCTTC 57.261 37.037 0.00 0.00 0.00 3.46
234 235 9.257428 ACTATACTTCTTCTAACTAAGCACCTT 57.743 33.333 0.00 0.00 0.00 3.50
235 236 8.826293 ACTATACTTCTTCTAACTAAGCACCT 57.174 34.615 0.00 0.00 0.00 4.00
236 237 8.905850 AGACTATACTTCTTCTAACTAAGCACC 58.094 37.037 0.00 0.00 0.00 5.01
242 243 9.251440 TGCCAAAGACTATACTTCTTCTAACTA 57.749 33.333 0.00 0.00 31.87 2.24
243 244 8.035984 GTGCCAAAGACTATACTTCTTCTAACT 58.964 37.037 0.00 0.00 31.87 2.24
244 245 7.278203 GGTGCCAAAGACTATACTTCTTCTAAC 59.722 40.741 0.00 0.00 31.87 2.34
245 246 7.328737 GGTGCCAAAGACTATACTTCTTCTAA 58.671 38.462 0.00 0.00 31.87 2.10
246 247 6.127140 GGGTGCCAAAGACTATACTTCTTCTA 60.127 42.308 0.00 0.00 31.87 2.10
247 248 5.338463 GGGTGCCAAAGACTATACTTCTTCT 60.338 44.000 0.00 0.00 31.87 2.85
248 249 4.876679 GGGTGCCAAAGACTATACTTCTTC 59.123 45.833 0.00 0.00 31.87 2.87
249 250 4.536489 AGGGTGCCAAAGACTATACTTCTT 59.464 41.667 0.00 0.00 34.66 2.52
250 251 4.104831 AGGGTGCCAAAGACTATACTTCT 58.895 43.478 0.00 0.00 0.00 2.85
251 252 4.081087 TGAGGGTGCCAAAGACTATACTTC 60.081 45.833 0.00 0.00 0.00 3.01
252 253 3.844211 TGAGGGTGCCAAAGACTATACTT 59.156 43.478 0.00 0.00 0.00 2.24
253 254 3.450904 TGAGGGTGCCAAAGACTATACT 58.549 45.455 0.00 0.00 0.00 2.12
254 255 3.451178 TCTGAGGGTGCCAAAGACTATAC 59.549 47.826 0.00 0.00 0.00 1.47
255 256 3.706594 CTCTGAGGGTGCCAAAGACTATA 59.293 47.826 0.00 0.00 0.00 1.31
256 257 2.503356 CTCTGAGGGTGCCAAAGACTAT 59.497 50.000 0.00 0.00 0.00 2.12
257 258 1.902508 CTCTGAGGGTGCCAAAGACTA 59.097 52.381 0.00 0.00 0.00 2.59
258 259 0.689623 CTCTGAGGGTGCCAAAGACT 59.310 55.000 0.00 0.00 0.00 3.24
259 260 0.687354 TCTCTGAGGGTGCCAAAGAC 59.313 55.000 4.59 0.00 0.00 3.01
260 261 1.661463 ATCTCTGAGGGTGCCAAAGA 58.339 50.000 4.59 0.00 0.00 2.52
261 262 2.768527 TCTATCTCTGAGGGTGCCAAAG 59.231 50.000 4.59 0.00 0.00 2.77
262 263 2.832838 TCTATCTCTGAGGGTGCCAAA 58.167 47.619 4.59 0.00 0.00 3.28
263 264 2.550277 TCTATCTCTGAGGGTGCCAA 57.450 50.000 4.59 0.00 0.00 4.52
264 265 2.783379 ATCTATCTCTGAGGGTGCCA 57.217 50.000 4.59 0.00 0.00 4.92
265 266 7.271511 CAAATATATCTATCTCTGAGGGTGCC 58.728 42.308 4.59 0.00 0.00 5.01
266 267 6.760770 GCAAATATATCTATCTCTGAGGGTGC 59.239 42.308 4.59 0.00 0.00 5.01
267 268 7.125507 AGGCAAATATATCTATCTCTGAGGGTG 59.874 40.741 4.59 0.00 0.00 4.61
268 269 7.195474 AGGCAAATATATCTATCTCTGAGGGT 58.805 38.462 4.59 0.00 0.00 4.34
269 270 7.673641 AGGCAAATATATCTATCTCTGAGGG 57.326 40.000 4.59 0.00 0.00 4.30
270 271 9.956640 AAAAGGCAAATATATCTATCTCTGAGG 57.043 33.333 4.59 0.00 0.00 3.86
272 273 9.224267 GCAAAAGGCAAATATATCTATCTCTGA 57.776 33.333 0.00 0.00 43.97 3.27
290 291 3.385384 GCTGGAGGGGCAAAAGGC 61.385 66.667 0.00 0.00 43.74 4.35
291 292 0.906282 AATGCTGGAGGGGCAAAAGG 60.906 55.000 0.00 0.00 43.14 3.11
292 293 0.978907 AAATGCTGGAGGGGCAAAAG 59.021 50.000 0.00 0.00 43.14 2.27
293 294 0.975887 GAAATGCTGGAGGGGCAAAA 59.024 50.000 0.00 0.00 43.14 2.44
294 295 0.904394 GGAAATGCTGGAGGGGCAAA 60.904 55.000 0.00 0.00 43.14 3.68
295 296 1.305213 GGAAATGCTGGAGGGGCAA 60.305 57.895 0.00 0.00 43.14 4.52
296 297 2.360191 GGAAATGCTGGAGGGGCA 59.640 61.111 0.00 0.00 44.05 5.36
297 298 1.755783 CTGGAAATGCTGGAGGGGC 60.756 63.158 0.00 0.00 0.00 5.80
298 299 0.394899 GACTGGAAATGCTGGAGGGG 60.395 60.000 0.00 0.00 0.00 4.79
299 300 0.622665 AGACTGGAAATGCTGGAGGG 59.377 55.000 0.00 0.00 0.00 4.30
300 301 2.744494 GCTAGACTGGAAATGCTGGAGG 60.744 54.545 0.00 0.00 0.00 4.30
301 302 2.170187 AGCTAGACTGGAAATGCTGGAG 59.830 50.000 0.00 0.00 0.00 3.86
302 303 2.169352 GAGCTAGACTGGAAATGCTGGA 59.831 50.000 0.00 0.00 0.00 3.86
303 304 2.559440 GAGCTAGACTGGAAATGCTGG 58.441 52.381 0.00 0.00 0.00 4.85
304 305 2.559440 GGAGCTAGACTGGAAATGCTG 58.441 52.381 0.00 0.00 0.00 4.41
305 306 1.137872 CGGAGCTAGACTGGAAATGCT 59.862 52.381 0.00 0.00 0.00 3.79
306 307 1.576356 CGGAGCTAGACTGGAAATGC 58.424 55.000 0.00 0.00 0.00 3.56
327 328 3.763671 GGTGGCTTCCAACCAGTG 58.236 61.111 0.00 0.00 38.04 3.66
332 333 1.603739 GACTGGGGTGGCTTCCAAC 60.604 63.158 0.00 0.00 41.21 3.77
333 334 2.843545 GACTGGGGTGGCTTCCAA 59.156 61.111 2.26 0.00 34.18 3.53
334 335 3.636231 CGACTGGGGTGGCTTCCA 61.636 66.667 2.26 0.00 0.00 3.53
335 336 2.595009 GATCGACTGGGGTGGCTTCC 62.595 65.000 0.00 0.00 0.00 3.46
336 337 1.153349 GATCGACTGGGGTGGCTTC 60.153 63.158 0.00 0.00 0.00 3.86
337 338 1.274703 ATGATCGACTGGGGTGGCTT 61.275 55.000 0.00 0.00 0.00 4.35
338 339 1.690633 ATGATCGACTGGGGTGGCT 60.691 57.895 0.00 0.00 0.00 4.75
339 340 1.524621 CATGATCGACTGGGGTGGC 60.525 63.158 0.00 0.00 0.00 5.01
340 341 0.253044 AACATGATCGACTGGGGTGG 59.747 55.000 0.00 0.00 0.00 4.61
341 342 2.979814 TAACATGATCGACTGGGGTG 57.020 50.000 0.00 0.00 0.00 4.61
342 343 3.992943 TTTAACATGATCGACTGGGGT 57.007 42.857 0.00 0.00 0.00 4.95
414 415 1.391577 TTGGCGCATCTGCATATTGT 58.608 45.000 10.83 0.00 42.21 2.71
417 418 0.885879 CCATTGGCGCATCTGCATAT 59.114 50.000 10.83 0.00 42.21 1.78
434 435 5.071653 TGTCGATGATCCAAGATAAATCCCA 59.928 40.000 0.00 0.00 0.00 4.37
437 438 8.562892 ACAATTGTCGATGATCCAAGATAAATC 58.437 33.333 4.92 0.00 0.00 2.17
466 467 0.469917 CGGATACTTCATGCCAGGGT 59.530 55.000 0.00 0.00 0.00 4.34
487 488 0.913934 TGCAAGAGCCCCCAGTGATA 60.914 55.000 0.00 0.00 41.13 2.15
506 507 0.607489 GTGTGAGTGCCTTCCTGCAT 60.607 55.000 0.00 0.00 44.30 3.96
509 510 0.394192 TGAGTGTGAGTGCCTTCCTG 59.606 55.000 0.00 0.00 0.00 3.86
562 573 4.619973 TGACATTGTCCATGTTTTGCTTC 58.380 39.130 14.05 0.00 46.96 3.86
581 592 3.744660 AGACACTGGAACCATCTTTGAC 58.255 45.455 0.00 0.00 0.00 3.18
596 607 2.906389 TGATGGGCAAGTAAGAGACACT 59.094 45.455 0.00 0.00 0.00 3.55
598 609 4.574674 AATGATGGGCAAGTAAGAGACA 57.425 40.909 0.00 0.00 0.00 3.41
600 611 5.428457 TCCTTAATGATGGGCAAGTAAGAGA 59.572 40.000 0.00 0.00 33.34 3.10
687 698 6.861065 TCGACAAAACTAGAGCTTCAAAAT 57.139 33.333 0.00 0.00 0.00 1.82
699 710 3.527533 AGCGGCATATTCGACAAAACTA 58.472 40.909 1.45 0.00 0.00 2.24
700 711 2.356135 AGCGGCATATTCGACAAAACT 58.644 42.857 1.45 0.00 0.00 2.66
701 712 2.825086 AGCGGCATATTCGACAAAAC 57.175 45.000 1.45 0.00 0.00 2.43
702 713 3.497118 CAAAGCGGCATATTCGACAAAA 58.503 40.909 1.45 0.00 0.00 2.44
704 715 1.202132 GCAAAGCGGCATATTCGACAA 60.202 47.619 1.45 0.00 0.00 3.18
706 717 0.657840 AGCAAAGCGGCATATTCGAC 59.342 50.000 1.45 0.00 35.83 4.20
707 718 1.063912 CAAGCAAAGCGGCATATTCGA 59.936 47.619 1.45 0.00 35.83 3.71
708 719 1.063912 TCAAGCAAAGCGGCATATTCG 59.936 47.619 1.45 0.00 35.83 3.34
709 720 2.849880 TCAAGCAAAGCGGCATATTC 57.150 45.000 1.45 0.00 35.83 1.75
712 723 2.618241 CCTAATCAAGCAAAGCGGCATA 59.382 45.455 1.45 0.00 35.83 3.14
733 745 1.895131 ACCAAGCCACAAATGATGACC 59.105 47.619 0.00 0.00 0.00 4.02
752 764 5.112129 ACAAGTTGGGTCATAGGGATTAC 57.888 43.478 7.96 0.00 0.00 1.89
757 769 4.166144 AGGAATACAAGTTGGGTCATAGGG 59.834 45.833 7.96 0.00 0.00 3.53
782 794 2.025589 TTGCGCGATATAAACACCCA 57.974 45.000 12.10 0.00 0.00 4.51
785 797 6.685403 ACACTTTTATTGCGCGATATAAACAC 59.315 34.615 17.97 0.00 0.00 3.32
786 798 6.777101 ACACTTTTATTGCGCGATATAAACA 58.223 32.000 17.97 0.00 0.00 2.83
833 845 6.017109 AGCGCATTGGTAAAAAGGAGTATATG 60.017 38.462 11.47 0.00 0.00 1.78
855 867 3.243434 ACGGAAGATATGGTTAGTGAGCG 60.243 47.826 0.00 0.00 0.00 5.03
925 940 6.740122 GCAGGAAGAAGGTTCTGAGATATACC 60.740 46.154 0.00 0.00 37.65 2.73
929 944 4.357325 AGCAGGAAGAAGGTTCTGAGATA 58.643 43.478 0.00 0.00 37.65 1.98
1150 1168 3.039526 AGGAGGAGAGGGAGGGGG 61.040 72.222 0.00 0.00 0.00 5.40
2030 2048 1.378250 CCTCCTCTTGCCCTTGCTG 60.378 63.158 0.00 0.00 38.71 4.41
2129 2147 5.918576 GGGACAAGCAAATTAAACAGTACAC 59.081 40.000 0.00 0.00 0.00 2.90
2181 2199 1.052124 AGACACCAACCCTCCGAACA 61.052 55.000 0.00 0.00 0.00 3.18
2216 2234 3.825585 TCCTGCAATTTAGTGTGAATGCA 59.174 39.130 0.00 0.00 0.00 3.96
2267 2285 7.017319 TGAATAGAATCCATGATCTGAGCAT 57.983 36.000 1.93 1.93 0.00 3.79
2298 2316 2.138320 CGATCCTATCATGCGCAAACT 58.862 47.619 17.11 3.89 0.00 2.66
2299 2317 1.867233 ACGATCCTATCATGCGCAAAC 59.133 47.619 17.11 0.00 0.00 2.93
2325 2346 6.865205 TCTGTCAAGTATCAGCATCAATATCG 59.135 38.462 0.00 0.00 0.00 2.92
2391 2412 2.307496 TTGGAACGGAGGGTGTAGTA 57.693 50.000 0.00 0.00 0.00 1.82
2392 2413 1.426751 TTTGGAACGGAGGGTGTAGT 58.573 50.000 0.00 0.00 0.00 2.73
2393 2414 2.554370 TTTTGGAACGGAGGGTGTAG 57.446 50.000 0.00 0.00 0.00 2.74
2394 2415 3.839490 TCTATTTTGGAACGGAGGGTGTA 59.161 43.478 0.00 0.00 0.00 2.90
2395 2416 2.640826 TCTATTTTGGAACGGAGGGTGT 59.359 45.455 0.00 0.00 0.00 4.16
2396 2417 3.343941 TCTATTTTGGAACGGAGGGTG 57.656 47.619 0.00 0.00 0.00 4.61
2397 2418 3.521937 TCATCTATTTTGGAACGGAGGGT 59.478 43.478 0.00 0.00 0.00 4.34
2398 2419 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
2399 2420 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
2400 2421 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
2401 2422 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
2402 2423 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
2403 2424 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
2479 2500 6.350110 GCAAATGAGTATGGAGCCTTAAACAA 60.350 38.462 0.00 0.00 0.00 2.83
2518 2541 1.003959 TAAGCATGCACAGGTCGCA 60.004 52.632 21.98 0.00 44.94 5.10
2533 2556 6.127507 TGCAGGCTCAGATATATACAGCTAAG 60.128 42.308 8.99 0.00 0.00 2.18
2634 2659 9.391006 ACGGACTTGTATGATTTATAAACACAT 57.609 29.630 17.72 17.72 0.00 3.21
2670 2695 4.080863 CACTGCCCTTGAAGTAGGATAACT 60.081 45.833 0.00 0.00 37.50 2.24
2810 2838 0.791610 CGGAAACACCAAATACGCGC 60.792 55.000 5.73 0.00 38.90 6.86
2828 2856 0.893270 TGTTTCACAATCCAGGGCCG 60.893 55.000 0.00 0.00 0.00 6.13
2831 2859 5.473066 AAGAAATGTTTCACAATCCAGGG 57.527 39.130 8.09 0.00 39.61 4.45
2892 2920 6.710597 AACTACACTAGACTCTGTTTGACA 57.289 37.500 0.00 0.00 0.00 3.58
2895 2923 8.138712 AGAAGAAACTACACTAGACTCTGTTTG 58.861 37.037 0.00 0.00 0.00 2.93
3020 3049 9.119418 TGATTCAACTTCAAAGAACAGTTATCA 57.881 29.630 0.00 0.00 29.20 2.15
3021 3050 9.604626 CTGATTCAACTTCAAAGAACAGTTATC 57.395 33.333 0.00 0.00 0.00 1.75
3032 3061 9.793259 AGGTAAACTATCTGATTCAACTTCAAA 57.207 29.630 0.00 0.00 0.00 2.69
3121 3150 7.227512 GTGACTGATATCCCCTTTTATCAACAG 59.772 40.741 0.00 0.00 35.13 3.16
3125 3154 6.823286 TGTGACTGATATCCCCTTTTATCA 57.177 37.500 0.00 0.00 34.52 2.15
3129 3158 5.520748 AGTTGTGACTGATATCCCCTTTT 57.479 39.130 0.00 0.00 33.99 2.27
3132 3161 4.324563 CCAAAGTTGTGACTGATATCCCCT 60.325 45.833 0.00 0.00 35.91 4.79
3133 3162 3.947834 CCAAAGTTGTGACTGATATCCCC 59.052 47.826 0.00 0.00 35.91 4.81
3134 3163 4.589908 ACCAAAGTTGTGACTGATATCCC 58.410 43.478 0.00 0.00 35.91 3.85
3135 3164 5.491982 AGACCAAAGTTGTGACTGATATCC 58.508 41.667 0.00 0.00 35.91 2.59
3136 3165 5.582665 GGAGACCAAAGTTGTGACTGATATC 59.417 44.000 0.00 0.00 35.91 1.63
3137 3166 5.491982 GGAGACCAAAGTTGTGACTGATAT 58.508 41.667 0.00 0.00 35.91 1.63
3138 3167 4.894784 GGAGACCAAAGTTGTGACTGATA 58.105 43.478 0.00 0.00 35.91 2.15
3139 3168 3.744660 GGAGACCAAAGTTGTGACTGAT 58.255 45.455 0.00 0.00 35.91 2.90
3140 3169 3.194005 GGAGACCAAAGTTGTGACTGA 57.806 47.619 0.00 0.00 35.91 3.41
3170 3199 2.502947 TGCATCCTGACATCTTAGTGCT 59.497 45.455 0.00 0.00 32.87 4.40
3242 3271 3.965539 CTGAAGGACGCAGGCCAGG 62.966 68.421 5.01 0.00 0.00 4.45
3243 3272 2.435586 CTGAAGGACGCAGGCCAG 60.436 66.667 5.01 0.00 0.00 4.85
3244 3273 2.337879 AAACTGAAGGACGCAGGCCA 62.338 55.000 5.01 0.00 37.69 5.36
3299 3328 2.556189 CAGCTAGTCTGACTATGCGGAT 59.444 50.000 22.03 9.12 45.72 4.18
3354 3383 3.439476 TCAGCTAGTCGACAACTCTAACC 59.561 47.826 19.50 0.00 39.55 2.85
3381 3410 4.079253 AGCCTGTATGTTTACTTGGGTTG 58.921 43.478 0.00 0.00 33.12 3.77
3385 3414 4.943705 ACATGAGCCTGTATGTTTACTTGG 59.056 41.667 0.00 0.00 34.00 3.61
3405 3434 3.685550 GCTTTGGGCCTGTATGTCTACAT 60.686 47.826 4.53 0.63 37.24 2.29
3511 3540 2.916502 AAACACGACACGAGCAGCCA 62.917 55.000 0.00 0.00 0.00 4.75
3538 3627 1.173043 CCTAAATGGCTTTGCGGACA 58.827 50.000 0.00 0.00 0.00 4.02
3733 3822 4.058124 GCTCAACAGATTTTGGTTTTCCC 58.942 43.478 0.00 0.00 39.73 3.97
3809 3898 8.263854 ACATCATAGGGCTACTAATACACTTT 57.736 34.615 0.00 0.00 34.79 2.66
3911 4002 4.111577 ACTAGGATGAATGTTTCCCTGGA 58.888 43.478 0.00 0.00 32.05 3.86
3924 4015 7.921041 AATCAGAATTCCACTACTAGGATGA 57.079 36.000 0.65 0.00 34.56 2.92
4067 4158 7.704472 TCTGCATTGTTCACGTAAAAGAAATTT 59.296 29.630 0.00 0.00 34.92 1.82
4068 4159 7.167468 GTCTGCATTGTTCACGTAAAAGAAATT 59.833 33.333 0.00 0.00 0.00 1.82
4069 4160 6.636850 GTCTGCATTGTTCACGTAAAAGAAAT 59.363 34.615 0.00 0.00 0.00 2.17
4073 4164 4.219033 GGTCTGCATTGTTCACGTAAAAG 58.781 43.478 0.00 0.00 0.00 2.27
4079 4170 1.872952 TCTTGGTCTGCATTGTTCACG 59.127 47.619 0.00 0.00 0.00 4.35
4118 4209 3.203040 AGAATAGGTGCACTTTGGGCTAT 59.797 43.478 17.98 10.68 0.00 2.97
4122 4213 3.420893 TGAAGAATAGGTGCACTTTGGG 58.579 45.455 17.98 0.00 0.00 4.12
4336 4427 7.229306 TCCAACTTAAGATACCATGAATGATGC 59.771 37.037 10.09 0.00 0.00 3.91
4411 4502 3.059884 CACATTAGCTAGCACCGGTATG 58.940 50.000 18.83 7.55 0.00 2.39
4414 4505 0.178068 CCACATTAGCTAGCACCGGT 59.822 55.000 18.83 0.00 0.00 5.28
4581 4672 2.480845 ACTCGCACCAGAAGTAACAAC 58.519 47.619 0.00 0.00 0.00 3.32
4582 4673 2.902705 ACTCGCACCAGAAGTAACAA 57.097 45.000 0.00 0.00 0.00 2.83
4583 4674 2.902705 AACTCGCACCAGAAGTAACA 57.097 45.000 0.00 0.00 0.00 2.41
4584 4675 5.857822 AATAAACTCGCACCAGAAGTAAC 57.142 39.130 0.00 0.00 0.00 2.50
4585 4676 6.261381 ACAAAATAAACTCGCACCAGAAGTAA 59.739 34.615 0.00 0.00 0.00 2.24
4704 4795 2.710377 TCTGAATGCGCCTTTATGTGT 58.290 42.857 4.18 0.00 0.00 3.72
4705 4796 3.763097 TTCTGAATGCGCCTTTATGTG 57.237 42.857 4.18 0.00 0.00 3.21
4722 4813 4.346730 TCCAGGTGAATTTCATGCATTCT 58.653 39.130 14.87 0.00 32.63 2.40
4762 4853 1.947456 GAAAGGTTTCGCAGGTTCTGT 59.053 47.619 0.00 0.00 33.43 3.41
4772 4863 3.641437 TTGGAATGCTGAAAGGTTTCG 57.359 42.857 0.00 0.00 40.01 3.46
4850 4941 6.738114 AGATCACTTGTTTACAACCAACATG 58.262 36.000 0.00 0.00 34.13 3.21
4966 5061 3.238108 AGCGGTATGAACTGAACAGAG 57.762 47.619 8.87 0.00 33.42 3.35
4976 5071 7.441890 TTTTCTGAATACAAAGCGGTATGAA 57.558 32.000 0.00 0.00 34.32 2.57
5066 5161 7.121315 GCTACATCTAACCAACTTGAAAGGATT 59.879 37.037 0.00 0.00 0.00 3.01
5120 5215 6.649973 TGGCAACTTCCATCAAAACATTATTG 59.350 34.615 0.00 0.00 37.61 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.