Multiple sequence alignment - TraesCS5A01G153600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G153600 chr5A 100.000 4122 0 0 1 4122 331118966 331114845 0.000000e+00 7613.0
1 TraesCS5A01G153600 chr5A 100.000 3393 0 0 4366 7758 331114601 331111209 0.000000e+00 6266.0
2 TraesCS5A01G153600 chr5A 99.405 168 1 0 7591 7758 676383833 676383666 9.780000e-79 305.0
3 TraesCS5A01G153600 chr5A 94.872 39 2 0 394 432 331118538 331118500 2.340000e-05 62.1
4 TraesCS5A01G153600 chr5A 94.872 39 2 0 429 467 331118573 331118535 2.340000e-05 62.1
5 TraesCS5A01G153600 chr5B 96.196 3601 83 19 563 4120 281576348 281579937 0.000000e+00 5842.0
6 TraesCS5A01G153600 chr5B 94.260 2892 107 26 4366 7241 281579981 281582829 0.000000e+00 4366.0
7 TraesCS5A01G153600 chr5B 99.394 165 1 0 7594 7758 281443760 281443596 4.550000e-77 300.0
8 TraesCS5A01G153600 chr5B 86.522 230 20 10 7371 7594 281583079 281583303 7.780000e-60 243.0
9 TraesCS5A01G153600 chr5B 88.953 172 10 1 1 163 281575773 281575944 3.670000e-48 204.0
10 TraesCS5A01G153600 chr5D 95.473 3601 81 25 563 4116 247078194 247074629 0.000000e+00 5672.0
11 TraesCS5A01G153600 chr5D 94.746 1808 64 10 4366 6157 247074317 247072525 0.000000e+00 2784.0
12 TraesCS5A01G153600 chr5D 93.543 1177 40 12 6187 7356 247072215 247071068 0.000000e+00 1720.0
13 TraesCS5A01G153600 chr5D 88.312 231 13 6 1 220 247078744 247078517 1.660000e-66 265.0
14 TraesCS5A01G153600 chr5D 91.736 121 7 3 7371 7489 247071083 247070964 1.730000e-36 165.0
15 TraesCS5A01G153600 chr3A 88.282 1007 77 13 3067 4051 95944642 95945629 0.000000e+00 1168.0
16 TraesCS5A01G153600 chr3A 85.015 1021 115 13 5047 6031 95947609 95948627 0.000000e+00 1003.0
17 TraesCS5A01G153600 chr3B 87.972 1006 83 15 3060 4046 127855299 127856285 0.000000e+00 1153.0
18 TraesCS5A01G153600 chr3B 85.927 1009 105 11 5047 6019 127861482 127862489 0.000000e+00 1042.0
19 TraesCS5A01G153600 chr3B 99.401 167 1 0 7592 7758 793111066 793111232 3.520000e-78 303.0
20 TraesCS5A01G153600 chr3D 87.071 1021 92 16 3071 4070 81692298 81693299 0.000000e+00 1118.0
21 TraesCS5A01G153600 chr3D 85.658 1011 109 10 5055 6031 81695311 81696319 0.000000e+00 1031.0
22 TraesCS5A01G153600 chr1A 98.837 172 1 1 7587 7758 21175443 21175613 9.780000e-79 305.0
23 TraesCS5A01G153600 chr1B 98.824 170 2 0 7589 7758 552960208 552960039 3.520000e-78 303.0
24 TraesCS5A01G153600 chr1B 99.398 166 1 0 7593 7758 60587880 60588045 1.270000e-77 302.0
25 TraesCS5A01G153600 chr4B 99.398 166 1 0 7593 7758 211651435 211651270 1.270000e-77 302.0
26 TraesCS5A01G153600 chr4A 99.398 166 1 0 7593 7758 714276498 714276333 1.270000e-77 302.0
27 TraesCS5A01G153600 chr7A 98.817 169 1 1 7590 7758 162727985 162728152 4.550000e-77 300.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G153600 chr5A 331111209 331118966 7757 True 3500.80 7613 97.43600 1 7758 4 chr5A.!!$R2 7757
1 TraesCS5A01G153600 chr5B 281575773 281583303 7530 False 2663.75 5842 91.48275 1 7594 4 chr5B.!!$F1 7593
2 TraesCS5A01G153600 chr5D 247070964 247078744 7780 True 2121.20 5672 92.76200 1 7489 5 chr5D.!!$R1 7488
3 TraesCS5A01G153600 chr3A 95944642 95948627 3985 False 1085.50 1168 86.64850 3067 6031 2 chr3A.!!$F1 2964
4 TraesCS5A01G153600 chr3B 127855299 127856285 986 False 1153.00 1153 87.97200 3060 4046 1 chr3B.!!$F1 986
5 TraesCS5A01G153600 chr3B 127861482 127862489 1007 False 1042.00 1042 85.92700 5047 6019 1 chr3B.!!$F2 972
6 TraesCS5A01G153600 chr3D 81692298 81696319 4021 False 1074.50 1118 86.36450 3071 6031 2 chr3D.!!$F1 2960

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
424 485 0.038526 ACGAGGATTGACGGACACAC 60.039 55.000 0.00 0.00 0.00 3.82 F
425 486 0.038618 CGAGGATTGACGGACACACA 60.039 55.000 0.00 0.00 0.00 3.72 F
554 622 0.331278 AAGTGGGGATCCGATTGCAA 59.669 50.000 0.00 0.00 35.24 4.08 F
1468 1590 1.749334 CTCCCTCCCCACGTATGCTC 61.749 65.000 0.00 0.00 0.00 4.26 F
1965 2095 0.442699 GCCGACATCAAAGTTCGGTC 59.557 55.000 10.68 0.47 44.82 4.79 F
3309 3468 0.987294 CATCCTCCAGTGGGTCAACT 59.013 55.000 9.92 0.00 34.93 3.16 F
3632 3791 1.355381 TCCTCCATGGATTGCAACTGT 59.645 47.619 16.63 0.00 40.56 3.55 F
4790 5620 1.688735 CCCATCAGCCGTATCTTCTGA 59.311 52.381 0.00 0.00 40.62 3.27 F
6091 7413 1.075151 GGGAGGGAGAGGTGGGTAG 60.075 68.421 0.00 0.00 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1416 1538 1.937546 GCCATTGCCAGTACTGCCAC 61.938 60.000 17.86 9.33 0.00 5.01 R
1502 1629 2.030805 GGTGTTTGTTGCAGATCTGACC 60.031 50.000 27.04 17.18 0.00 4.02 R
1963 2093 2.126424 GTCGGCGGACTGACTGAC 60.126 66.667 16.52 3.05 46.88 3.51 R
3430 3589 0.828022 ATTGGTCGAACTGGCCGATA 59.172 50.000 0.33 0.00 38.38 2.92 R
3701 3860 0.178873 AAAGACTCCACCCCCAGCTA 60.179 55.000 0.00 0.00 0.00 3.32 R
4892 5733 1.382240 CATTAGTGTGGGTGGGCCA 59.618 57.895 0.00 0.00 36.17 5.36 R
5355 6631 0.693430 AGGAGGAGATGCTGATGCCA 60.693 55.000 0.00 0.00 38.71 4.92 R
6706 8312 0.108662 GCAAAGAAGGGGGCGATTTG 60.109 55.000 0.00 0.00 34.70 2.32 R
7375 9147 0.181587 TGCAAAGAACCGGGAACTCA 59.818 50.000 6.32 0.00 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.873361 CCCTATTATGACATGGCTATGCG 59.127 47.826 10.37 0.00 37.85 4.73
27 28 1.511850 TATGACATGGCTATGCGTGC 58.488 50.000 10.37 0.00 37.85 5.34
35 36 3.833706 GCTATGCGTGCCATTTCTC 57.166 52.632 0.00 0.00 35.34 2.87
144 155 4.123506 ACATTTACAAAGGGCGTTTTTGG 58.876 39.130 1.81 0.00 39.30 3.28
162 173 7.063544 CGTTTTTGGATGACTTGGTAAAACAAA 59.936 33.333 0.00 0.00 35.07 2.83
163 174 8.888716 GTTTTTGGATGACTTGGTAAAACAAAT 58.111 29.630 0.00 0.00 35.32 2.32
165 176 9.535878 TTTTGGATGACTTGGTAAAACAAATAC 57.464 29.630 0.00 0.00 0.00 1.89
166 177 7.825331 TGGATGACTTGGTAAAACAAATACA 57.175 32.000 0.00 0.00 0.00 2.29
167 178 8.415950 TGGATGACTTGGTAAAACAAATACAT 57.584 30.769 0.00 0.00 0.00 2.29
168 179 8.303156 TGGATGACTTGGTAAAACAAATACATG 58.697 33.333 0.00 0.00 0.00 3.21
169 180 7.275560 GGATGACTTGGTAAAACAAATACATGC 59.724 37.037 0.00 0.00 0.00 4.06
170 181 7.043961 TGACTTGGTAAAACAAATACATGCA 57.956 32.000 0.00 0.00 0.00 3.96
171 182 7.665690 TGACTTGGTAAAACAAATACATGCAT 58.334 30.769 0.00 0.00 0.00 3.96
172 183 7.812191 TGACTTGGTAAAACAAATACATGCATC 59.188 33.333 0.00 0.00 0.00 3.91
173 184 7.895759 ACTTGGTAAAACAAATACATGCATCT 58.104 30.769 0.00 0.00 0.00 2.90
174 185 8.367156 ACTTGGTAAAACAAATACATGCATCTT 58.633 29.630 0.00 0.00 0.00 2.40
175 186 8.531622 TTGGTAAAACAAATACATGCATCTTG 57.468 30.769 0.00 0.99 0.00 3.02
176 187 7.890515 TGGTAAAACAAATACATGCATCTTGA 58.109 30.769 0.00 0.00 0.00 3.02
177 188 8.363390 TGGTAAAACAAATACATGCATCTTGAA 58.637 29.630 0.00 0.00 0.00 2.69
178 189 8.863049 GGTAAAACAAATACATGCATCTTGAAG 58.137 33.333 0.00 0.00 0.00 3.02
179 190 7.894376 AAAACAAATACATGCATCTTGAAGG 57.106 32.000 0.00 0.00 0.00 3.46
219 247 5.454966 ACTGGACTGTGAAAATTTAACCCT 58.545 37.500 0.00 0.00 0.00 4.34
220 248 5.897250 ACTGGACTGTGAAAATTTAACCCTT 59.103 36.000 0.00 0.00 0.00 3.95
221 249 6.382859 ACTGGACTGTGAAAATTTAACCCTTT 59.617 34.615 0.00 0.00 0.00 3.11
222 250 7.562088 ACTGGACTGTGAAAATTTAACCCTTTA 59.438 33.333 0.00 0.00 0.00 1.85
223 251 8.485578 TGGACTGTGAAAATTTAACCCTTTAT 57.514 30.769 0.00 0.00 0.00 1.40
224 252 9.589461 TGGACTGTGAAAATTTAACCCTTTATA 57.411 29.630 0.00 0.00 0.00 0.98
226 254 9.550811 GACTGTGAAAATTTAACCCTTTATACG 57.449 33.333 0.00 0.00 0.00 3.06
228 256 9.550811 CTGTGAAAATTTAACCCTTTATACGTC 57.449 33.333 0.00 0.00 0.00 4.34
230 258 9.550811 GTGAAAATTTAACCCTTTATACGTCTG 57.449 33.333 0.00 0.00 0.00 3.51
231 259 8.238631 TGAAAATTTAACCCTTTATACGTCTGC 58.761 33.333 0.00 0.00 0.00 4.26
232 260 7.690952 AAATTTAACCCTTTATACGTCTGCA 57.309 32.000 0.00 0.00 0.00 4.41
233 261 6.673154 ATTTAACCCTTTATACGTCTGCAC 57.327 37.500 0.00 0.00 0.00 4.57
236 264 2.300723 ACCCTTTATACGTCTGCACACA 59.699 45.455 0.00 0.00 0.00 3.72
237 265 3.055385 ACCCTTTATACGTCTGCACACAT 60.055 43.478 0.00 0.00 0.00 3.21
239 267 3.932710 CCTTTATACGTCTGCACACATGT 59.067 43.478 0.00 0.00 0.00 3.21
240 268 4.032900 CCTTTATACGTCTGCACACATGTC 59.967 45.833 0.00 0.00 0.00 3.06
241 269 2.010145 ATACGTCTGCACACATGTCC 57.990 50.000 0.00 0.00 0.00 4.02
242 270 0.676736 TACGTCTGCACACATGTCCA 59.323 50.000 0.00 0.00 0.00 4.02
253 281 1.584495 CATGTCCAGACGTGTCCGA 59.416 57.895 11.14 0.00 41.97 4.55
263 292 0.389948 ACGTGTCCGATTCAAGCCTC 60.390 55.000 0.00 0.00 37.88 4.70
269 298 1.745087 TCCGATTCAAGCCTCATTTGC 59.255 47.619 0.00 0.00 0.00 3.68
270 299 1.202336 CCGATTCAAGCCTCATTTGCC 60.202 52.381 0.00 0.00 0.00 4.52
285 314 3.611728 TGCCCATGCATACAACCAT 57.388 47.368 0.00 0.00 44.23 3.55
286 315 1.863325 TGCCCATGCATACAACCATT 58.137 45.000 0.00 0.00 44.23 3.16
288 317 1.069049 GCCCATGCATACAACCATTCC 59.931 52.381 0.00 0.00 37.47 3.01
289 318 1.688197 CCCATGCATACAACCATTCCC 59.312 52.381 0.00 0.00 0.00 3.97
290 319 2.669781 CCATGCATACAACCATTCCCT 58.330 47.619 0.00 0.00 0.00 4.20
291 320 2.624838 CCATGCATACAACCATTCCCTC 59.375 50.000 0.00 0.00 0.00 4.30
294 323 0.937304 CATACAACCATTCCCTCGCG 59.063 55.000 0.00 0.00 0.00 5.87
306 366 2.050269 CCTCGCGATTGGTAGGGAT 58.950 57.895 10.36 0.00 0.00 3.85
312 372 4.338012 TCGCGATTGGTAGGGATAGATAA 58.662 43.478 3.71 0.00 0.00 1.75
355 416 7.512058 AGTGATACTGGATGAGTCAAATCCTAT 59.488 37.037 12.87 4.80 43.52 2.57
357 418 9.379770 TGATACTGGATGAGTCAAATCCTATAA 57.620 33.333 12.87 0.00 43.52 0.98
359 420 7.921041 ACTGGATGAGTCAAATCCTATAAGA 57.079 36.000 12.87 0.00 43.52 2.10
363 424 7.069455 TGGATGAGTCAAATCCTATAAGACGAA 59.931 37.037 12.87 0.00 43.52 3.85
369 430 3.594603 ATCCTATAAGACGAATGCCCG 57.405 47.619 0.00 0.00 0.00 6.13
370 431 1.616865 TCCTATAAGACGAATGCCCGG 59.383 52.381 0.00 0.00 0.00 5.73
375 436 0.953960 AAGACGAATGCCCGGAACAC 60.954 55.000 0.73 0.00 0.00 3.32
392 453 3.000819 CCCGGCCGCCTCCATATA 61.001 66.667 22.85 0.00 0.00 0.86
393 454 2.367202 CCCGGCCGCCTCCATATAT 61.367 63.158 22.85 0.00 0.00 0.86
394 455 1.153369 CCGGCCGCCTCCATATATG 60.153 63.158 22.85 5.68 0.00 1.78
395 456 1.613317 CCGGCCGCCTCCATATATGA 61.613 60.000 22.85 0.00 0.00 2.15
396 457 0.179100 CGGCCGCCTCCATATATGAG 60.179 60.000 14.67 9.23 0.00 2.90
397 458 0.462759 GGCCGCCTCCATATATGAGC 60.463 60.000 14.54 12.17 0.00 4.26
398 459 0.539051 GCCGCCTCCATATATGAGCT 59.461 55.000 14.54 0.00 0.00 4.09
399 460 1.757118 GCCGCCTCCATATATGAGCTA 59.243 52.381 14.54 0.00 0.00 3.32
400 461 2.223923 GCCGCCTCCATATATGAGCTAG 60.224 54.545 14.54 8.85 0.00 3.42
401 462 3.291584 CCGCCTCCATATATGAGCTAGA 58.708 50.000 14.54 1.71 0.00 2.43
402 463 3.894427 CCGCCTCCATATATGAGCTAGAT 59.106 47.826 14.54 0.00 0.00 1.98
403 464 5.073428 CCGCCTCCATATATGAGCTAGATA 58.927 45.833 14.54 0.00 0.00 1.98
404 465 5.714333 CCGCCTCCATATATGAGCTAGATAT 59.286 44.000 14.54 0.00 0.00 1.63
405 466 6.887002 CCGCCTCCATATATGAGCTAGATATA 59.113 42.308 14.54 7.19 0.00 0.86
406 467 7.148154 CCGCCTCCATATATGAGCTAGATATAC 60.148 44.444 14.54 0.00 0.00 1.47
407 468 7.413548 CGCCTCCATATATGAGCTAGATATACG 60.414 44.444 14.54 1.03 0.00 3.06
408 469 7.608376 GCCTCCATATATGAGCTAGATATACGA 59.392 40.741 14.54 0.00 0.00 3.43
409 470 9.161629 CCTCCATATATGAGCTAGATATACGAG 57.838 40.741 14.54 15.31 0.00 4.18
410 471 9.161629 CTCCATATATGAGCTAGATATACGAGG 57.838 40.741 14.54 12.78 0.00 4.63
411 472 8.881262 TCCATATATGAGCTAGATATACGAGGA 58.119 37.037 14.54 10.51 0.00 3.71
412 473 9.679661 CCATATATGAGCTAGATATACGAGGAT 57.320 37.037 14.54 0.00 0.00 3.24
416 477 6.745159 TGAGCTAGATATACGAGGATTGAC 57.255 41.667 0.00 0.00 0.00 3.18
417 478 5.351740 TGAGCTAGATATACGAGGATTGACG 59.648 44.000 0.00 0.00 0.00 4.35
418 479 4.636648 AGCTAGATATACGAGGATTGACGG 59.363 45.833 0.00 0.00 0.00 4.79
419 480 4.634883 GCTAGATATACGAGGATTGACGGA 59.365 45.833 0.00 0.00 0.00 4.69
420 481 5.447548 GCTAGATATACGAGGATTGACGGAC 60.448 48.000 0.00 0.00 0.00 4.79
421 482 4.395625 AGATATACGAGGATTGACGGACA 58.604 43.478 0.00 0.00 0.00 4.02
422 483 2.865343 ATACGAGGATTGACGGACAC 57.135 50.000 0.00 0.00 0.00 3.67
423 484 1.536940 TACGAGGATTGACGGACACA 58.463 50.000 0.00 0.00 0.00 3.72
424 485 0.038526 ACGAGGATTGACGGACACAC 60.039 55.000 0.00 0.00 0.00 3.82
425 486 0.038618 CGAGGATTGACGGACACACA 60.039 55.000 0.00 0.00 0.00 3.72
426 487 1.404181 CGAGGATTGACGGACACACAT 60.404 52.381 0.00 0.00 0.00 3.21
427 488 2.699954 GAGGATTGACGGACACACATT 58.300 47.619 0.00 0.00 0.00 2.71
428 489 3.074412 GAGGATTGACGGACACACATTT 58.926 45.455 0.00 0.00 0.00 2.32
429 490 2.813754 AGGATTGACGGACACACATTTG 59.186 45.455 0.00 0.00 0.00 2.32
430 491 2.811431 GGATTGACGGACACACATTTGA 59.189 45.455 0.00 0.00 0.00 2.69
431 492 3.120199 GGATTGACGGACACACATTTGAG 60.120 47.826 0.00 0.00 0.00 3.02
432 493 1.225855 TGACGGACACACATTTGAGC 58.774 50.000 0.00 0.00 0.00 4.26
433 494 1.202639 TGACGGACACACATTTGAGCT 60.203 47.619 0.00 0.00 0.00 4.09
434 495 2.036604 TGACGGACACACATTTGAGCTA 59.963 45.455 0.00 0.00 0.00 3.32
435 496 2.668457 GACGGACACACATTTGAGCTAG 59.332 50.000 0.00 0.00 0.00 3.42
436 497 2.299013 ACGGACACACATTTGAGCTAGA 59.701 45.455 0.00 0.00 0.00 2.43
446 507 6.490381 ACACATTTGAGCTAGATATACGAGGA 59.510 38.462 0.00 0.00 0.00 3.71
449 510 8.031864 ACATTTGAGCTAGATATACGAGGATTG 58.968 37.037 0.00 0.00 0.00 2.67
451 512 6.745159 TGAGCTAGATATACGAGGATTGAC 57.255 41.667 0.00 0.00 0.00 3.18
457 518 2.865343 ATACGAGGATTGACGGACAC 57.135 50.000 0.00 0.00 0.00 3.67
462 530 3.887110 ACGAGGATTGACGGACACATATA 59.113 43.478 0.00 0.00 0.00 0.86
473 541 3.826729 CGGACACATATATGAGGAGTCCA 59.173 47.826 28.81 0.00 43.12 4.02
476 544 5.047660 GGACACATATATGAGGAGTCCAGTC 60.048 48.000 27.05 16.95 42.65 3.51
482 550 1.323271 TGAGGAGTCCAGTCGGATGC 61.323 60.000 12.86 0.00 45.33 3.91
483 551 2.022240 GAGGAGTCCAGTCGGATGCC 62.022 65.000 12.86 0.00 45.33 4.40
515 583 5.952526 TTTTTCTTCTATTTGGACCGTCC 57.047 39.130 10.96 10.96 36.96 4.79
516 584 4.627284 TTTCTTCTATTTGGACCGTCCA 57.373 40.909 16.73 16.73 46.61 4.02
547 615 2.440247 GGGCAAAGTGGGGATCCG 60.440 66.667 5.45 0.00 35.24 4.18
554 622 0.331278 AAGTGGGGATCCGATTGCAA 59.669 50.000 0.00 0.00 35.24 4.08
563 631 3.188048 GGATCCGATTGCAAATGCTCTAG 59.812 47.826 1.71 0.00 42.66 2.43
644 750 4.145876 CACGTGAATTGTGCTGTGTAAT 57.854 40.909 10.90 0.00 0.00 1.89
647 753 4.975502 ACGTGAATTGTGCTGTGTAATTTG 59.024 37.500 0.00 0.00 0.00 2.32
649 755 4.150451 GTGAATTGTGCTGTGTAATTTGGC 59.850 41.667 0.00 0.00 0.00 4.52
694 800 5.243981 AGTCAGAACACGCTAGTCTAGTTA 58.756 41.667 8.68 0.00 0.00 2.24
696 802 6.022821 GTCAGAACACGCTAGTCTAGTTAAG 58.977 44.000 8.68 1.50 0.00 1.85
698 804 4.398673 AGAACACGCTAGTCTAGTTAAGGG 59.601 45.833 8.68 2.44 0.00 3.95
738 844 2.779506 TCTACTGTCAGCGTGAAGAGA 58.220 47.619 0.00 0.00 0.00 3.10
827 937 2.039879 ACCCTACAAATCAGGACACCAC 59.960 50.000 0.00 0.00 34.91 4.16
835 945 2.529389 AGGACACCACCACCTCCC 60.529 66.667 0.00 0.00 0.00 4.30
856 966 2.100603 CGGAGTCGTCGGAGCTTC 59.899 66.667 0.00 0.00 0.00 3.86
857 967 2.100603 GGAGTCGTCGGAGCTTCG 59.899 66.667 8.54 8.54 0.00 3.79
858 968 2.577378 GAGTCGTCGGAGCTTCGC 60.577 66.667 10.36 3.98 0.00 4.70
859 969 3.324099 GAGTCGTCGGAGCTTCGCA 62.324 63.158 10.36 0.00 0.00 5.10
1416 1538 2.202298 GGCCGCAACGACGATTTG 60.202 61.111 0.00 0.00 34.06 2.32
1468 1590 1.749334 CTCCCTCCCCACGTATGCTC 61.749 65.000 0.00 0.00 0.00 4.26
1502 1629 4.229876 GCTTCGTTTCATTTTCCCTCTTG 58.770 43.478 0.00 0.00 0.00 3.02
1963 2093 1.419922 CGCCGACATCAAAGTTCGG 59.580 57.895 4.89 4.89 45.67 4.30
1964 2094 1.289109 CGCCGACATCAAAGTTCGGT 61.289 55.000 10.68 0.00 44.82 4.69
1965 2095 0.442699 GCCGACATCAAAGTTCGGTC 59.557 55.000 10.68 0.47 44.82 4.79
1966 2096 1.790755 CCGACATCAAAGTTCGGTCA 58.209 50.000 1.03 0.00 38.94 4.02
1976 2106 1.733399 GTTCGGTCAGTCAGTCCGC 60.733 63.158 0.00 0.00 46.49 5.54
2088 2218 2.350522 CCAGATTCAAGGTCTTGGTCG 58.649 52.381 10.39 6.46 40.78 4.79
2164 2294 1.938577 CGGACTGGCTGAATGAGAATG 59.061 52.381 0.00 0.00 0.00 2.67
2294 2424 4.132336 GGTTCATTAAGGTCCCCGATAAC 58.868 47.826 0.00 0.00 0.00 1.89
2654 2784 7.041644 GCTTGGTATCGGCACTTAATATTTACA 60.042 37.037 0.00 0.00 0.00 2.41
2697 2827 4.789012 TGAACCAGATGGATTTGAAAGC 57.211 40.909 5.72 0.00 38.94 3.51
2754 2893 6.403866 TTCACATGCTAACTGAAACCATTT 57.596 33.333 0.00 0.00 0.00 2.32
2768 2907 9.374711 ACTGAAACCATTTAATAAAGGGAAAGA 57.625 29.630 21.42 3.82 44.82 2.52
2796 2935 6.241645 GCCCATAGTATGCCTTTAAAGATCT 58.758 40.000 16.98 9.09 0.00 2.75
2838 2977 3.815401 CCCGGCTACCAAATAGAAGATTG 59.185 47.826 0.00 0.00 31.83 2.67
2872 3011 1.677052 GGTACAACAACAAAAGGCGGA 59.323 47.619 0.00 0.00 0.00 5.54
2944 3083 1.206610 TGTGCACCACAACAAAGCAAT 59.793 42.857 15.69 0.00 41.69 3.56
2966 3105 8.836413 GCAATATGCATTACTAGGTTTTGACTA 58.164 33.333 3.54 0.00 44.26 2.59
3060 3199 6.032956 TGTCTACACATGTAAGGTAAGGTG 57.967 41.667 0.00 0.00 0.00 4.00
3069 3208 5.155278 TGTAAGGTAAGGTGTGGTGTATG 57.845 43.478 0.00 0.00 0.00 2.39
3200 3343 1.280133 CTCTTCTGGAACCAGCCATCA 59.720 52.381 15.20 0.00 43.31 3.07
3309 3468 0.987294 CATCCTCCAGTGGGTCAACT 59.013 55.000 9.92 0.00 34.93 3.16
3430 3589 4.677182 AGTTGCTATTCCAGTTTTCCCAT 58.323 39.130 0.00 0.00 0.00 4.00
3486 3645 1.745653 TCTATCTCGGCAGGCATATCG 59.254 52.381 0.00 0.00 0.00 2.92
3632 3791 1.355381 TCCTCCATGGATTGCAACTGT 59.645 47.619 16.63 0.00 40.56 3.55
3670 3829 6.991938 AGAAGAAGATACTCATGGATGTAGC 58.008 40.000 0.00 0.00 0.00 3.58
3708 3867 9.868277 TTGTTTTCACAAAATATAATAGCTGGG 57.132 29.630 0.00 0.00 40.10 4.45
3967 4126 2.571653 TCCCGAATGTCATCCTCAAACT 59.428 45.455 0.00 0.00 0.00 2.66
4077 4239 4.044426 CACTGCTTTTTAAAGGCACTGAC 58.956 43.478 10.40 0.00 40.86 3.51
4442 5179 7.837863 TCCTACAGAGTTTGATTACTTACCAG 58.162 38.462 0.00 0.00 0.00 4.00
4569 5338 7.148407 GGACACTGAAATTGTCGTTATCTCATT 60.148 37.037 0.00 0.00 43.75 2.57
4790 5620 1.688735 CCCATCAGCCGTATCTTCTGA 59.311 52.381 0.00 0.00 40.62 3.27
4804 5634 2.904434 TCTTCTGAAAGTCACCCCTACC 59.096 50.000 0.00 0.00 33.95 3.18
4805 5635 2.715763 TCTGAAAGTCACCCCTACCT 57.284 50.000 0.00 0.00 33.76 3.08
4807 5637 2.158219 TCTGAAAGTCACCCCTACCTGA 60.158 50.000 0.00 0.00 33.76 3.86
4808 5638 1.975680 TGAAAGTCACCCCTACCTGAC 59.024 52.381 0.00 0.00 37.63 3.51
4824 5662 7.309867 CCCTACCTGACATATAAGTGTACATCC 60.310 44.444 0.00 0.00 31.16 3.51
4892 5733 9.227777 GTTTTACCCATTAGAAATACACTCACT 57.772 33.333 0.00 0.00 0.00 3.41
5075 6350 7.993101 AGATATGAAAACACCACATTGATCAG 58.007 34.615 0.00 0.00 0.00 2.90
5083 6359 5.059161 ACACCACATTGATCAGAATATCCG 58.941 41.667 0.00 0.00 0.00 4.18
5355 6631 2.772924 CCCTCCCCAGGCACAATT 59.227 61.111 0.00 0.00 38.72 2.32
5565 6841 2.962569 CGGAGGTCGCAGAAGTCA 59.037 61.111 0.00 0.00 39.69 3.41
5615 6891 1.376424 CGAGGATGTGCCACTTGCT 60.376 57.895 4.41 4.41 42.00 3.91
5634 6910 4.856607 CGGAGCTCGTCGGCCTTC 62.857 72.222 7.83 0.00 0.00 3.46
5636 6912 2.103340 GAGCTCGTCGGCCTTCTC 59.897 66.667 0.00 0.00 0.00 2.87
5736 7012 3.966543 CCCACGGGCTTGAGGGTT 61.967 66.667 5.00 0.00 35.26 4.11
6071 7393 3.582358 GGGGGTTTTCGTGGGGGA 61.582 66.667 0.00 0.00 0.00 4.81
6091 7413 1.075151 GGGAGGGAGAGGTGGGTAG 60.075 68.421 0.00 0.00 0.00 3.18
6126 7448 3.400054 GGTCCGACCCTGGGAAGG 61.400 72.222 22.23 20.92 34.80 3.46
6173 7497 1.202758 TGGAATTGAGTCGGTTGCTGT 60.203 47.619 0.00 0.00 0.00 4.40
6178 7502 3.607370 GAGTCGGTTGCTGTCCCCC 62.607 68.421 0.00 0.00 0.00 5.40
6262 7866 8.475331 TTTTTATTTTTCGTTTGTGCTAACCA 57.525 26.923 0.00 0.00 0.00 3.67
6263 7867 8.649973 TTTTATTTTTCGTTTGTGCTAACCAT 57.350 26.923 0.00 0.00 0.00 3.55
6280 7884 7.395772 TGCTAACCATTATCAGGTTTTGAATCA 59.604 33.333 2.64 0.00 46.85 2.57
6281 7885 8.416329 GCTAACCATTATCAGGTTTTGAATCAT 58.584 33.333 2.64 0.00 46.85 2.45
6330 7935 4.142315 GCACACACATTTCCTTATGCATCT 60.142 41.667 0.19 0.00 0.00 2.90
6333 7938 5.587844 ACACACATTTCCTTATGCATCTCTC 59.412 40.000 0.19 0.00 0.00 3.20
6403 8009 2.408835 CACGGGATCAAATGCGCC 59.591 61.111 4.18 0.00 0.00 6.53
6623 8229 1.715993 GAAGCAGAAGAACGACCCTC 58.284 55.000 0.00 0.00 0.00 4.30
6628 8234 2.678324 CAGAAGAACGACCCTCAGAAC 58.322 52.381 0.00 0.00 0.00 3.01
6706 8312 2.292292 GCTCTACACGAGGATCTTCTCC 59.708 54.545 3.09 0.00 45.33 3.71
6723 8329 0.407918 TCCAAATCGCCCCCTTCTTT 59.592 50.000 0.00 0.00 0.00 2.52
6767 8373 2.487428 CCCAGTGAGAGAGACGCG 59.513 66.667 3.53 3.53 0.00 6.01
6967 8576 0.457035 AACAGCTGCACTTGTGTTGG 59.543 50.000 15.27 0.00 31.94 3.77
7022 8631 7.792925 TGTGTCGTATACAAAGAAAGATTGTG 58.207 34.615 3.32 0.00 40.95 3.33
7050 8659 1.337118 TGCAAGGGGTGTCCATTTTC 58.663 50.000 0.00 0.00 34.42 2.29
7051 8660 1.133199 TGCAAGGGGTGTCCATTTTCT 60.133 47.619 0.00 0.00 34.42 2.52
7052 8661 1.970640 GCAAGGGGTGTCCATTTTCTT 59.029 47.619 0.00 0.00 34.42 2.52
7053 8662 2.368548 GCAAGGGGTGTCCATTTTCTTT 59.631 45.455 0.00 0.00 34.42 2.52
7054 8663 3.181455 GCAAGGGGTGTCCATTTTCTTTT 60.181 43.478 0.00 0.00 34.42 2.27
7055 8664 4.685848 GCAAGGGGTGTCCATTTTCTTTTT 60.686 41.667 0.00 0.00 34.42 1.94
7056 8665 4.955811 AGGGGTGTCCATTTTCTTTTTC 57.044 40.909 0.00 0.00 38.24 2.29
7057 8666 4.556697 AGGGGTGTCCATTTTCTTTTTCT 58.443 39.130 0.00 0.00 38.24 2.52
7058 8667 4.968719 AGGGGTGTCCATTTTCTTTTTCTT 59.031 37.500 0.00 0.00 38.24 2.52
7059 8668 5.428457 AGGGGTGTCCATTTTCTTTTTCTTT 59.572 36.000 0.00 0.00 38.24 2.52
7082 8691 3.131709 TGCCCTTTCTCTCTGTTTCTG 57.868 47.619 0.00 0.00 0.00 3.02
7160 8770 1.737236 GCGAATGTAGTGTGGCATTCA 59.263 47.619 14.81 0.00 46.63 2.57
7165 8775 5.484173 AATGTAGTGTGGCATTCATTACG 57.516 39.130 0.00 0.00 33.00 3.18
7266 8876 3.940852 TCAACATCATGCCAGTGATACAC 59.059 43.478 0.00 0.00 36.72 2.90
7301 8911 2.488153 GGTACTGTTTTCATCAGTGGCC 59.512 50.000 0.00 0.00 44.41 5.36
7316 8926 3.006110 CAGTGGCCACAAGAAAATGATGT 59.994 43.478 36.39 9.21 0.00 3.06
7455 9227 5.233902 TCCATGTTTTGTCAAATTTCAAGCG 59.766 36.000 0.00 0.00 0.00 4.68
7467 9239 6.816140 TCAAATTTCAAGCGGTTCTTTTTCTT 59.184 30.769 0.00 0.00 31.27 2.52
7499 9271 6.491403 AGGGGATCAAATTTCATGTATAGTGC 59.509 38.462 0.00 0.00 0.00 4.40
7500 9272 6.294731 GGGGATCAAATTTCATGTATAGTGCC 60.295 42.308 0.00 0.00 0.00 5.01
7503 9275 6.449635 TCAAATTTCATGTATAGTGCCACC 57.550 37.500 0.00 0.00 0.00 4.61
7506 9278 3.275617 TTCATGTATAGTGCCACCCAC 57.724 47.619 0.00 0.00 45.01 4.61
7515 9287 1.398692 GTGCCACCCACAAAAAGAGA 58.601 50.000 0.00 0.00 44.06 3.10
7516 9288 1.338020 GTGCCACCCACAAAAAGAGAG 59.662 52.381 0.00 0.00 44.06 3.20
7517 9289 1.214175 TGCCACCCACAAAAAGAGAGA 59.786 47.619 0.00 0.00 0.00 3.10
7518 9290 1.882623 GCCACCCACAAAAAGAGAGAG 59.117 52.381 0.00 0.00 0.00 3.20
7520 9292 2.106511 CCACCCACAAAAAGAGAGAGGA 59.893 50.000 0.00 0.00 0.00 3.71
7537 9309 4.107072 AGAGGAGGGAAACAGAATGATCA 58.893 43.478 0.00 0.00 39.69 2.92
7542 9314 5.455899 GGAGGGAAACAGAATGATCATAGCT 60.456 44.000 9.04 6.90 39.69 3.32
7558 9331 7.781693 TGATCATAGCTGGCTATAGATGACATA 59.218 37.037 20.76 6.82 37.16 2.29
7563 9336 6.226787 AGCTGGCTATAGATGACATAACAAC 58.773 40.000 3.21 0.00 0.00 3.32
7580 9353 3.528532 ACAACTTGTTATAGCTACCGGC 58.471 45.455 0.00 0.00 42.19 6.13
7582 9355 2.112998 ACTTGTTATAGCTACCGGCCA 58.887 47.619 0.00 0.00 43.05 5.36
7583 9356 2.102588 ACTTGTTATAGCTACCGGCCAG 59.897 50.000 0.00 0.00 43.05 4.85
7594 9367 3.871594 GCTACCGGCCAGCTATATTATTG 59.128 47.826 18.89 0.00 36.07 1.90
7595 9368 4.623171 GCTACCGGCCAGCTATATTATTGT 60.623 45.833 18.89 0.00 36.07 2.71
7596 9369 4.367039 ACCGGCCAGCTATATTATTGTT 57.633 40.909 0.00 0.00 0.00 2.83
7597 9370 5.492855 ACCGGCCAGCTATATTATTGTTA 57.507 39.130 0.00 0.00 0.00 2.41
7598 9371 5.488341 ACCGGCCAGCTATATTATTGTTAG 58.512 41.667 0.00 0.00 0.00 2.34
7599 9372 5.247564 ACCGGCCAGCTATATTATTGTTAGA 59.752 40.000 0.00 0.00 0.00 2.10
7600 9373 5.581085 CCGGCCAGCTATATTATTGTTAGAC 59.419 44.000 2.24 0.00 0.00 2.59
7601 9374 6.398918 CGGCCAGCTATATTATTGTTAGACT 58.601 40.000 2.24 0.00 0.00 3.24
7602 9375 6.311445 CGGCCAGCTATATTATTGTTAGACTG 59.689 42.308 2.24 0.00 0.00 3.51
7603 9376 7.162082 GGCCAGCTATATTATTGTTAGACTGT 58.838 38.462 0.00 0.00 0.00 3.55
7604 9377 8.311836 GGCCAGCTATATTATTGTTAGACTGTA 58.688 37.037 0.00 0.00 0.00 2.74
7605 9378 9.877178 GCCAGCTATATTATTGTTAGACTGTAT 57.123 33.333 0.00 0.00 0.00 2.29
7637 9410 9.299963 TGTGTATATTGTAACGTTGTATACCAC 57.700 33.333 11.99 14.15 30.78 4.16
7638 9411 8.755018 GTGTATATTGTAACGTTGTATACCACC 58.245 37.037 11.99 6.07 30.78 4.61
7639 9412 8.694540 TGTATATTGTAACGTTGTATACCACCT 58.305 33.333 11.99 0.00 30.78 4.00
7640 9413 9.185192 GTATATTGTAACGTTGTATACCACCTC 57.815 37.037 11.99 0.00 0.00 3.85
7641 9414 5.465532 TTGTAACGTTGTATACCACCTCA 57.534 39.130 11.99 0.00 0.00 3.86
7642 9415 5.664294 TGTAACGTTGTATACCACCTCAT 57.336 39.130 11.99 0.00 0.00 2.90
7643 9416 6.040209 TGTAACGTTGTATACCACCTCATT 57.960 37.500 11.99 0.00 0.00 2.57
7644 9417 7.167924 TGTAACGTTGTATACCACCTCATTA 57.832 36.000 11.99 0.00 0.00 1.90
7645 9418 7.784037 TGTAACGTTGTATACCACCTCATTAT 58.216 34.615 11.99 0.00 0.00 1.28
7646 9419 8.911965 TGTAACGTTGTATACCACCTCATTATA 58.088 33.333 11.99 0.00 0.00 0.98
7647 9420 9.918630 GTAACGTTGTATACCACCTCATTATAT 57.081 33.333 11.99 0.00 0.00 0.86
7668 9441 7.814693 ATATATATATGTGATAGGCCACCCC 57.185 40.000 5.01 0.00 36.26 4.95
7684 9457 2.584608 CCTAGAGGGTTGTGCCGG 59.415 66.667 0.00 0.00 38.44 6.13
7685 9458 2.291043 CCTAGAGGGTTGTGCCGGT 61.291 63.158 1.90 0.00 38.44 5.28
7686 9459 1.677552 CTAGAGGGTTGTGCCGGTT 59.322 57.895 1.90 0.00 38.44 4.44
7687 9460 0.391263 CTAGAGGGTTGTGCCGGTTC 60.391 60.000 1.90 0.00 38.44 3.62
7688 9461 1.833787 TAGAGGGTTGTGCCGGTTCC 61.834 60.000 1.90 0.00 38.44 3.62
7689 9462 4.280019 AGGGTTGTGCCGGTTCCC 62.280 66.667 1.90 8.32 38.44 3.97
7692 9465 4.280019 GTTGTGCCGGTTCCCCCT 62.280 66.667 1.90 0.00 0.00 4.79
7693 9466 2.529643 TTGTGCCGGTTCCCCCTA 60.530 61.111 1.90 0.00 0.00 3.53
7694 9467 2.154747 TTGTGCCGGTTCCCCCTAA 61.155 57.895 1.90 0.00 0.00 2.69
7695 9468 1.717038 TTGTGCCGGTTCCCCCTAAA 61.717 55.000 1.90 0.00 0.00 1.85
7696 9469 1.378119 GTGCCGGTTCCCCCTAAAG 60.378 63.158 1.90 0.00 0.00 1.85
7697 9470 2.439701 GCCGGTTCCCCCTAAAGC 60.440 66.667 1.90 0.00 0.00 3.51
7698 9471 2.274432 CCGGTTCCCCCTAAAGCC 59.726 66.667 0.00 0.00 0.00 4.35
7699 9472 2.306384 CCGGTTCCCCCTAAAGCCT 61.306 63.158 0.00 0.00 0.00 4.58
7700 9473 0.984432 CCGGTTCCCCCTAAAGCCTA 60.984 60.000 0.00 0.00 0.00 3.93
7701 9474 1.137697 CGGTTCCCCCTAAAGCCTAT 58.862 55.000 0.00 0.00 0.00 2.57
7702 9475 1.493446 CGGTTCCCCCTAAAGCCTATT 59.507 52.381 0.00 0.00 0.00 1.73
7703 9476 2.748465 CGGTTCCCCCTAAAGCCTATTG 60.748 54.545 0.00 0.00 0.00 1.90
7704 9477 2.243994 GGTTCCCCCTAAAGCCTATTGT 59.756 50.000 0.00 0.00 0.00 2.71
7705 9478 3.552875 GTTCCCCCTAAAGCCTATTGTC 58.447 50.000 0.00 0.00 0.00 3.18
7706 9479 3.145559 TCCCCCTAAAGCCTATTGTCT 57.854 47.619 0.00 0.00 0.00 3.41
7707 9480 3.470868 TCCCCCTAAAGCCTATTGTCTT 58.529 45.455 0.00 0.00 0.00 3.01
7708 9481 4.637600 TCCCCCTAAAGCCTATTGTCTTA 58.362 43.478 0.00 0.00 0.00 2.10
7709 9482 4.411212 TCCCCCTAAAGCCTATTGTCTTAC 59.589 45.833 0.00 0.00 0.00 2.34
7710 9483 4.165372 CCCCCTAAAGCCTATTGTCTTACA 59.835 45.833 0.00 0.00 0.00 2.41
7711 9484 5.163088 CCCCCTAAAGCCTATTGTCTTACAT 60.163 44.000 0.00 0.00 0.00 2.29
7712 9485 5.765182 CCCCTAAAGCCTATTGTCTTACATG 59.235 44.000 0.00 0.00 0.00 3.21
7713 9486 5.765182 CCCTAAAGCCTATTGTCTTACATGG 59.235 44.000 0.00 0.00 0.00 3.66
7714 9487 6.357367 CCTAAAGCCTATTGTCTTACATGGT 58.643 40.000 0.00 0.00 0.00 3.55
7715 9488 7.419750 CCCTAAAGCCTATTGTCTTACATGGTA 60.420 40.741 0.00 0.00 0.00 3.25
7716 9489 8.157476 CCTAAAGCCTATTGTCTTACATGGTAT 58.843 37.037 0.00 0.00 0.00 2.73
7717 9490 9.209175 CTAAAGCCTATTGTCTTACATGGTATC 57.791 37.037 0.00 0.00 0.00 2.24
7718 9491 6.747414 AGCCTATTGTCTTACATGGTATCA 57.253 37.500 0.00 0.00 0.00 2.15
7719 9492 6.525629 AGCCTATTGTCTTACATGGTATCAC 58.474 40.000 0.00 0.00 0.00 3.06
7720 9493 5.405571 GCCTATTGTCTTACATGGTATCACG 59.594 44.000 0.00 0.00 0.00 4.35
7721 9494 5.405571 CCTATTGTCTTACATGGTATCACGC 59.594 44.000 0.00 0.00 0.00 5.34
7722 9495 4.465632 TTGTCTTACATGGTATCACGCT 57.534 40.909 0.00 0.00 0.00 5.07
7723 9496 5.585820 TTGTCTTACATGGTATCACGCTA 57.414 39.130 0.00 0.00 0.00 4.26
7724 9497 5.183014 TGTCTTACATGGTATCACGCTAG 57.817 43.478 0.00 0.00 0.00 3.42
7725 9498 4.037565 TGTCTTACATGGTATCACGCTAGG 59.962 45.833 0.00 0.00 0.00 3.02
7726 9499 4.037684 GTCTTACATGGTATCACGCTAGGT 59.962 45.833 0.00 0.00 0.00 3.08
7727 9500 4.647853 TCTTACATGGTATCACGCTAGGTT 59.352 41.667 0.00 0.00 0.00 3.50
7728 9501 5.829391 TCTTACATGGTATCACGCTAGGTTA 59.171 40.000 0.00 0.00 0.00 2.85
7729 9502 4.317671 ACATGGTATCACGCTAGGTTAC 57.682 45.455 0.00 0.00 0.00 2.50
7730 9503 3.243301 ACATGGTATCACGCTAGGTTACG 60.243 47.826 0.00 0.00 0.00 3.18
7731 9504 2.368439 TGGTATCACGCTAGGTTACGT 58.632 47.619 0.00 0.00 44.75 3.57
7732 9505 2.355756 TGGTATCACGCTAGGTTACGTC 59.644 50.000 0.00 0.00 41.32 4.34
7733 9506 2.287248 GGTATCACGCTAGGTTACGTCC 60.287 54.545 0.00 0.00 41.32 4.79
7734 9507 0.379669 ATCACGCTAGGTTACGTCCG 59.620 55.000 0.00 0.00 41.32 4.79
7735 9508 1.870901 CACGCTAGGTTACGTCCGC 60.871 63.158 0.00 0.00 41.32 5.54
7736 9509 2.042831 ACGCTAGGTTACGTCCGCT 61.043 57.895 0.00 0.00 38.28 5.52
7737 9510 1.138247 CGCTAGGTTACGTCCGCTT 59.862 57.895 0.00 0.00 0.00 4.68
7738 9511 0.864797 CGCTAGGTTACGTCCGCTTC 60.865 60.000 0.00 0.00 0.00 3.86
7739 9512 0.527169 GCTAGGTTACGTCCGCTTCC 60.527 60.000 0.00 0.00 0.00 3.46
7740 9513 0.248377 CTAGGTTACGTCCGCTTCCG 60.248 60.000 0.00 0.00 0.00 4.30
7741 9514 2.270297 TAGGTTACGTCCGCTTCCGC 62.270 60.000 0.00 0.00 0.00 5.54
7742 9515 3.184003 GTTACGTCCGCTTCCGCC 61.184 66.667 0.00 0.00 0.00 6.13
7743 9516 3.376078 TTACGTCCGCTTCCGCCT 61.376 61.111 0.00 0.00 0.00 5.52
7744 9517 2.045708 TTACGTCCGCTTCCGCCTA 61.046 57.895 0.00 0.00 0.00 3.93
7745 9518 1.594194 TTACGTCCGCTTCCGCCTAA 61.594 55.000 0.00 0.00 0.00 2.69
7746 9519 1.594194 TACGTCCGCTTCCGCCTAAA 61.594 55.000 0.00 0.00 0.00 1.85
7747 9520 1.738830 CGTCCGCTTCCGCCTAAAA 60.739 57.895 0.00 0.00 0.00 1.52
7748 9521 1.293267 CGTCCGCTTCCGCCTAAAAA 61.293 55.000 0.00 0.00 0.00 1.94
7749 9522 0.167470 GTCCGCTTCCGCCTAAAAAC 59.833 55.000 0.00 0.00 0.00 2.43
7750 9523 0.956902 TCCGCTTCCGCCTAAAAACC 60.957 55.000 0.00 0.00 0.00 3.27
7751 9524 1.504900 CGCTTCCGCCTAAAAACCC 59.495 57.895 0.00 0.00 0.00 4.11
7752 9525 0.958876 CGCTTCCGCCTAAAAACCCT 60.959 55.000 0.00 0.00 0.00 4.34
7753 9526 1.676615 CGCTTCCGCCTAAAAACCCTA 60.677 52.381 0.00 0.00 0.00 3.53
7754 9527 2.439409 GCTTCCGCCTAAAAACCCTAA 58.561 47.619 0.00 0.00 0.00 2.69
7755 9528 2.821378 GCTTCCGCCTAAAAACCCTAAA 59.179 45.455 0.00 0.00 0.00 1.85
7756 9529 3.366679 GCTTCCGCCTAAAAACCCTAAAC 60.367 47.826 0.00 0.00 0.00 2.01
7757 9530 2.794103 TCCGCCTAAAAACCCTAAACC 58.206 47.619 0.00 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 0.166814 GACACTGAGAAATGGCACGC 59.833 55.000 0.00 0.00 0.00 5.34
24 25 4.036734 TCAAAAGACACTGAGAAATGGCAC 59.963 41.667 0.00 0.00 0.00 5.01
27 28 6.145048 GCAATTCAAAAGACACTGAGAAATGG 59.855 38.462 0.00 0.00 0.00 3.16
35 36 5.981315 AGTTCATGCAATTCAAAAGACACTG 59.019 36.000 0.00 0.00 0.00 3.66
98 100 7.227910 TGTTCAAACTCTGTAGGAAACCATTAC 59.772 37.037 0.00 0.00 0.00 1.89
144 155 7.812191 TGCATGTATTTGTTTTACCAAGTCATC 59.188 33.333 0.00 0.00 0.00 2.92
162 173 7.174599 GCTCTTATTCCTTCAAGATGCATGTAT 59.825 37.037 2.46 0.00 30.70 2.29
163 174 6.484643 GCTCTTATTCCTTCAAGATGCATGTA 59.515 38.462 2.46 0.00 30.70 2.29
164 175 5.298777 GCTCTTATTCCTTCAAGATGCATGT 59.701 40.000 2.46 0.00 30.70 3.21
165 176 5.298527 TGCTCTTATTCCTTCAAGATGCATG 59.701 40.000 2.46 0.00 33.75 4.06
166 177 5.443283 TGCTCTTATTCCTTCAAGATGCAT 58.557 37.500 0.00 0.00 33.75 3.96
167 178 4.847198 TGCTCTTATTCCTTCAAGATGCA 58.153 39.130 0.00 0.00 35.01 3.96
168 179 5.764192 AGATGCTCTTATTCCTTCAAGATGC 59.236 40.000 0.00 0.00 30.70 3.91
171 182 9.988815 GTTATAGATGCTCTTATTCCTTCAAGA 57.011 33.333 0.00 0.00 0.00 3.02
172 183 9.995003 AGTTATAGATGCTCTTATTCCTTCAAG 57.005 33.333 0.00 0.00 0.00 3.02
173 184 9.770097 CAGTTATAGATGCTCTTATTCCTTCAA 57.230 33.333 0.00 0.00 0.00 2.69
174 185 8.370940 CCAGTTATAGATGCTCTTATTCCTTCA 58.629 37.037 0.00 0.00 0.00 3.02
175 186 8.589338 TCCAGTTATAGATGCTCTTATTCCTTC 58.411 37.037 0.00 0.00 0.00 3.46
176 187 8.371699 GTCCAGTTATAGATGCTCTTATTCCTT 58.628 37.037 0.00 0.00 0.00 3.36
177 188 7.732593 AGTCCAGTTATAGATGCTCTTATTCCT 59.267 37.037 0.00 0.00 0.00 3.36
178 189 7.816995 CAGTCCAGTTATAGATGCTCTTATTCC 59.183 40.741 0.00 0.00 0.00 3.01
179 190 8.364142 ACAGTCCAGTTATAGATGCTCTTATTC 58.636 37.037 0.00 0.00 0.00 1.75
193 221 7.728532 AGGGTTAAATTTTCACAGTCCAGTTAT 59.271 33.333 0.00 0.00 0.00 1.89
194 222 7.064229 AGGGTTAAATTTTCACAGTCCAGTTA 58.936 34.615 0.00 0.00 0.00 2.24
214 242 3.244284 TGTGTGCAGACGTATAAAGGGTT 60.244 43.478 9.70 0.00 0.00 4.11
217 245 3.932710 ACATGTGTGCAGACGTATAAAGG 59.067 43.478 8.59 0.00 0.00 3.11
219 247 3.930229 GGACATGTGTGCAGACGTATAAA 59.070 43.478 8.59 0.00 36.33 1.40
220 248 3.056465 TGGACATGTGTGCAGACGTATAA 60.056 43.478 8.59 0.00 41.48 0.98
221 249 2.494073 TGGACATGTGTGCAGACGTATA 59.506 45.455 8.59 0.00 41.48 1.47
222 250 1.275010 TGGACATGTGTGCAGACGTAT 59.725 47.619 8.59 0.00 41.48 3.06
223 251 0.676736 TGGACATGTGTGCAGACGTA 59.323 50.000 8.59 0.00 41.48 3.57
224 252 1.445518 TGGACATGTGTGCAGACGT 59.554 52.632 1.15 6.15 41.48 4.34
230 258 0.880278 ACACGTCTGGACATGTGTGC 60.880 55.000 1.15 0.00 43.42 4.57
231 259 1.139989 GACACGTCTGGACATGTGTG 58.860 55.000 1.15 6.64 44.93 3.82
233 261 1.008875 CGGACACGTCTGGACATGTG 61.009 60.000 1.15 7.10 37.90 3.21
236 264 0.895530 AATCGGACACGTCTGGACAT 59.104 50.000 6.18 0.00 41.85 3.06
237 265 0.242825 GAATCGGACACGTCTGGACA 59.757 55.000 6.18 0.00 41.85 4.02
239 267 0.963225 TTGAATCGGACACGTCTGGA 59.037 50.000 6.18 0.75 41.85 3.86
240 268 1.350193 CTTGAATCGGACACGTCTGG 58.650 55.000 6.18 0.00 41.85 3.86
241 269 0.716108 GCTTGAATCGGACACGTCTG 59.284 55.000 0.00 0.00 41.85 3.51
242 270 0.389948 GGCTTGAATCGGACACGTCT 60.390 55.000 0.00 0.00 41.85 4.18
250 278 1.202336 GGCAAATGAGGCTTGAATCGG 60.202 52.381 0.00 0.00 0.00 4.18
253 281 1.941377 TGGGCAAATGAGGCTTGAAT 58.059 45.000 0.00 0.00 0.00 2.57
269 298 1.688197 GGGAATGGTTGTATGCATGGG 59.312 52.381 10.16 0.00 0.00 4.00
270 299 2.624838 GAGGGAATGGTTGTATGCATGG 59.375 50.000 10.16 0.00 0.00 3.66
279 308 0.378257 CAATCGCGAGGGAATGGTTG 59.622 55.000 16.66 7.73 0.00 3.77
281 310 1.153168 CCAATCGCGAGGGAATGGT 60.153 57.895 21.48 0.00 0.00 3.55
283 312 1.502231 CTACCAATCGCGAGGGAATG 58.498 55.000 29.71 16.27 0.00 2.67
284 313 0.393077 CCTACCAATCGCGAGGGAAT 59.607 55.000 29.71 14.96 0.00 3.01
285 314 1.820581 CCTACCAATCGCGAGGGAA 59.179 57.895 29.71 12.54 0.00 3.97
286 315 3.533720 CCTACCAATCGCGAGGGA 58.466 61.111 29.71 16.68 0.00 4.20
288 317 1.202582 CTATCCCTACCAATCGCGAGG 59.797 57.143 16.66 14.33 0.00 4.63
289 318 2.160205 TCTATCCCTACCAATCGCGAG 58.840 52.381 16.66 3.14 0.00 5.03
290 319 2.281539 TCTATCCCTACCAATCGCGA 57.718 50.000 13.09 13.09 0.00 5.87
291 320 4.713824 TTATCTATCCCTACCAATCGCG 57.286 45.455 0.00 0.00 0.00 5.87
321 381 9.739276 TGACTCATCCAGTATCACTTTATTTTT 57.261 29.630 0.00 0.00 34.41 1.94
326 386 7.987458 GGATTTGACTCATCCAGTATCACTTTA 59.013 37.037 0.00 0.00 40.21 1.85
327 387 6.825721 GGATTTGACTCATCCAGTATCACTTT 59.174 38.462 0.00 0.00 40.21 2.66
335 396 7.470702 CGTCTTATAGGATTTGACTCATCCAGT 60.471 40.741 1.89 0.00 42.63 4.00
337 398 6.549736 TCGTCTTATAGGATTTGACTCATCCA 59.450 38.462 1.89 0.00 42.63 3.41
338 399 6.982852 TCGTCTTATAGGATTTGACTCATCC 58.017 40.000 0.00 0.00 40.72 3.51
340 401 7.386299 GCATTCGTCTTATAGGATTTGACTCAT 59.614 37.037 0.00 0.00 0.00 2.90
345 406 5.305585 GGGCATTCGTCTTATAGGATTTGA 58.694 41.667 0.00 0.00 0.00 2.69
355 416 0.609151 TGTTCCGGGCATTCGTCTTA 59.391 50.000 0.00 0.00 0.00 2.10
357 418 1.375523 GTGTTCCGGGCATTCGTCT 60.376 57.895 0.00 0.00 0.00 4.18
359 420 2.359478 GGTGTTCCGGGCATTCGT 60.359 61.111 0.00 0.00 0.00 3.85
375 436 2.367202 ATATATGGAGGCGGCCGGG 61.367 63.158 29.38 0.00 0.00 5.73
380 441 3.291584 TCTAGCTCATATATGGAGGCGG 58.708 50.000 12.78 11.88 32.96 6.13
381 442 6.832520 ATATCTAGCTCATATATGGAGGCG 57.167 41.667 12.78 4.52 32.96 5.52
382 443 7.608376 TCGTATATCTAGCTCATATATGGAGGC 59.392 40.741 12.78 13.57 30.92 4.70
383 444 9.161629 CTCGTATATCTAGCTCATATATGGAGG 57.838 40.741 12.78 5.16 30.92 4.30
384 445 9.161629 CCTCGTATATCTAGCTCATATATGGAG 57.838 40.741 12.78 17.42 30.92 3.86
385 446 8.881262 TCCTCGTATATCTAGCTCATATATGGA 58.119 37.037 12.78 15.34 30.92 3.41
386 447 9.679661 ATCCTCGTATATCTAGCTCATATATGG 57.320 37.037 12.78 14.10 30.92 2.74
390 451 9.062524 GTCAATCCTCGTATATCTAGCTCATAT 57.937 37.037 0.00 0.00 0.00 1.78
391 452 7.224949 CGTCAATCCTCGTATATCTAGCTCATA 59.775 40.741 0.00 0.00 0.00 2.15
392 453 6.037720 CGTCAATCCTCGTATATCTAGCTCAT 59.962 42.308 0.00 0.00 0.00 2.90
393 454 5.351740 CGTCAATCCTCGTATATCTAGCTCA 59.648 44.000 0.00 0.00 0.00 4.26
394 455 5.220700 CCGTCAATCCTCGTATATCTAGCTC 60.221 48.000 0.00 0.00 0.00 4.09
395 456 4.636648 CCGTCAATCCTCGTATATCTAGCT 59.363 45.833 0.00 0.00 0.00 3.32
396 457 4.634883 TCCGTCAATCCTCGTATATCTAGC 59.365 45.833 0.00 0.00 0.00 3.42
397 458 5.642491 TGTCCGTCAATCCTCGTATATCTAG 59.358 44.000 0.00 0.00 0.00 2.43
398 459 5.410746 GTGTCCGTCAATCCTCGTATATCTA 59.589 44.000 0.00 0.00 0.00 1.98
399 460 4.215827 GTGTCCGTCAATCCTCGTATATCT 59.784 45.833 0.00 0.00 0.00 1.98
400 461 4.023450 TGTGTCCGTCAATCCTCGTATATC 60.023 45.833 0.00 0.00 0.00 1.63
401 462 3.887110 TGTGTCCGTCAATCCTCGTATAT 59.113 43.478 0.00 0.00 0.00 0.86
402 463 3.065786 GTGTGTCCGTCAATCCTCGTATA 59.934 47.826 0.00 0.00 0.00 1.47
403 464 2.097036 TGTGTCCGTCAATCCTCGTAT 58.903 47.619 0.00 0.00 0.00 3.06
404 465 1.200716 GTGTGTCCGTCAATCCTCGTA 59.799 52.381 0.00 0.00 0.00 3.43
405 466 0.038526 GTGTGTCCGTCAATCCTCGT 60.039 55.000 0.00 0.00 0.00 4.18
406 467 0.038618 TGTGTGTCCGTCAATCCTCG 60.039 55.000 0.00 0.00 0.00 4.63
407 468 2.386661 ATGTGTGTCCGTCAATCCTC 57.613 50.000 0.00 0.00 0.00 3.71
408 469 2.813754 CAAATGTGTGTCCGTCAATCCT 59.186 45.455 0.00 0.00 0.00 3.24
409 470 2.811431 TCAAATGTGTGTCCGTCAATCC 59.189 45.455 0.00 0.00 0.00 3.01
410 471 3.667960 GCTCAAATGTGTGTCCGTCAATC 60.668 47.826 0.00 0.00 0.00 2.67
411 472 2.226437 GCTCAAATGTGTGTCCGTCAAT 59.774 45.455 0.00 0.00 0.00 2.57
412 473 1.601903 GCTCAAATGTGTGTCCGTCAA 59.398 47.619 0.00 0.00 0.00 3.18
413 474 1.202639 AGCTCAAATGTGTGTCCGTCA 60.203 47.619 0.00 0.00 0.00 4.35
414 475 1.512926 AGCTCAAATGTGTGTCCGTC 58.487 50.000 0.00 0.00 0.00 4.79
415 476 2.299013 TCTAGCTCAAATGTGTGTCCGT 59.701 45.455 0.00 0.00 0.00 4.69
416 477 2.959516 TCTAGCTCAAATGTGTGTCCG 58.040 47.619 0.00 0.00 0.00 4.79
417 478 6.363626 CGTATATCTAGCTCAAATGTGTGTCC 59.636 42.308 0.00 0.00 0.00 4.02
418 479 7.139392 TCGTATATCTAGCTCAAATGTGTGTC 58.861 38.462 0.00 0.00 0.00 3.67
419 480 7.039313 TCGTATATCTAGCTCAAATGTGTGT 57.961 36.000 0.00 0.00 0.00 3.72
420 481 6.584184 CCTCGTATATCTAGCTCAAATGTGTG 59.416 42.308 0.00 0.00 0.00 3.82
421 482 6.490381 TCCTCGTATATCTAGCTCAAATGTGT 59.510 38.462 0.00 0.00 0.00 3.72
422 483 6.914259 TCCTCGTATATCTAGCTCAAATGTG 58.086 40.000 0.00 0.00 0.00 3.21
423 484 7.710676 ATCCTCGTATATCTAGCTCAAATGT 57.289 36.000 0.00 0.00 0.00 2.71
424 485 8.246871 TCAATCCTCGTATATCTAGCTCAAATG 58.753 37.037 0.00 0.00 0.00 2.32
425 486 8.247562 GTCAATCCTCGTATATCTAGCTCAAAT 58.752 37.037 0.00 0.00 0.00 2.32
426 487 7.573283 CGTCAATCCTCGTATATCTAGCTCAAA 60.573 40.741 0.00 0.00 0.00 2.69
427 488 6.128254 CGTCAATCCTCGTATATCTAGCTCAA 60.128 42.308 0.00 0.00 0.00 3.02
428 489 5.351740 CGTCAATCCTCGTATATCTAGCTCA 59.648 44.000 0.00 0.00 0.00 4.26
429 490 5.220700 CCGTCAATCCTCGTATATCTAGCTC 60.221 48.000 0.00 0.00 0.00 4.09
430 491 4.636648 CCGTCAATCCTCGTATATCTAGCT 59.363 45.833 0.00 0.00 0.00 3.32
431 492 4.634883 TCCGTCAATCCTCGTATATCTAGC 59.365 45.833 0.00 0.00 0.00 3.42
432 493 5.642491 TGTCCGTCAATCCTCGTATATCTAG 59.358 44.000 0.00 0.00 0.00 2.43
433 494 5.410746 GTGTCCGTCAATCCTCGTATATCTA 59.589 44.000 0.00 0.00 0.00 1.98
434 495 4.215827 GTGTCCGTCAATCCTCGTATATCT 59.784 45.833 0.00 0.00 0.00 1.98
435 496 4.023450 TGTGTCCGTCAATCCTCGTATATC 60.023 45.833 0.00 0.00 0.00 1.63
436 497 3.887110 TGTGTCCGTCAATCCTCGTATAT 59.113 43.478 0.00 0.00 0.00 0.86
446 507 5.540337 ACTCCTCATATATGTGTCCGTCAAT 59.460 40.000 12.42 0.00 0.00 2.57
449 510 4.082679 GGACTCCTCATATATGTGTCCGTC 60.083 50.000 21.48 17.77 34.17 4.79
451 512 3.826729 TGGACTCCTCATATATGTGTCCG 59.173 47.826 25.47 13.96 43.66 4.79
457 518 4.336280 TCCGACTGGACTCCTCATATATG 58.664 47.826 6.36 6.36 40.17 1.78
513 581 1.695114 CCCCTGTATGTCCGCATGGA 61.695 60.000 0.00 0.00 43.88 3.41
514 582 1.227943 CCCCTGTATGTCCGCATGG 60.228 63.158 0.00 0.00 36.58 3.66
515 583 1.893808 GCCCCTGTATGTCCGCATG 60.894 63.158 0.00 0.00 36.58 4.06
516 584 1.920734 TTGCCCCTGTATGTCCGCAT 61.921 55.000 0.00 0.00 39.03 4.73
527 595 1.380380 GATCCCCACTTTGCCCCTG 60.380 63.158 0.00 0.00 0.00 4.45
547 615 5.910637 CTCTCTCTAGAGCATTTGCAATC 57.089 43.478 15.35 0.00 42.79 2.67
578 684 5.547276 ACCTCATTTTCCCATCCATTTTTCA 59.453 36.000 0.00 0.00 0.00 2.69
631 737 1.678627 ACGCCAAATTACACAGCACAA 59.321 42.857 0.00 0.00 0.00 3.33
634 740 3.339141 TCATACGCCAAATTACACAGCA 58.661 40.909 0.00 0.00 0.00 4.41
644 750 5.163561 GGAAGATTCCAATTCATACGCCAAA 60.164 40.000 6.74 0.00 46.76 3.28
647 753 4.489679 GGAAGATTCCAATTCATACGCC 57.510 45.455 6.74 0.00 46.76 5.68
675 781 4.398673 CCCTTAACTAGACTAGCGTGTTCT 59.601 45.833 9.52 0.00 0.00 3.01
694 800 0.322008 CTGAAGAAGCGGCTTCCCTT 60.322 55.000 32.81 23.67 42.79 3.95
696 802 0.606673 AACTGAAGAAGCGGCTTCCC 60.607 55.000 32.81 25.61 42.79 3.97
698 804 3.003793 AGAAAAACTGAAGAAGCGGCTTC 59.996 43.478 30.39 30.39 43.53 3.86
738 844 3.498071 CCCACCACCACACCACCT 61.498 66.667 0.00 0.00 0.00 4.00
804 914 2.039879 GGTGTCCTGATTTGTAGGGTGT 59.960 50.000 0.00 0.00 35.96 4.16
835 945 4.180946 CTCCGACGACTCCGGCAG 62.181 72.222 0.00 0.00 46.16 4.85
1206 1328 1.010574 GTCGTCGATGGAGAGCTCG 60.011 63.158 8.37 0.00 36.25 5.03
1332 1454 2.123382 CGGTAGAGGGGGAGGGAC 60.123 72.222 0.00 0.00 0.00 4.46
1416 1538 1.937546 GCCATTGCCAGTACTGCCAC 61.938 60.000 17.86 9.33 0.00 5.01
1502 1629 2.030805 GGTGTTTGTTGCAGATCTGACC 60.031 50.000 27.04 17.18 0.00 4.02
1963 2093 2.126424 GTCGGCGGACTGACTGAC 60.126 66.667 16.52 3.05 46.88 3.51
1976 2106 5.880054 AAAATGTTTACAGAGATGGTCGG 57.120 39.130 0.00 0.00 0.00 4.79
2294 2424 7.454260 AAAATTGCTCTAGGACCTAAACAAG 57.546 36.000 2.08 0.00 0.00 3.16
2479 2609 3.087031 AGCTCCATTTGACCACATCTTG 58.913 45.455 0.00 0.00 0.00 3.02
2697 2827 7.173907 AGGTACATCAAGACATTTCAAACTGAG 59.826 37.037 0.00 0.00 0.00 3.35
2754 2893 4.664392 TGGGCGTTTCTTTCCCTTTATTA 58.336 39.130 0.00 0.00 40.69 0.98
2768 2907 2.729028 AAGGCATACTATGGGCGTTT 57.271 45.000 0.00 0.00 32.35 3.60
2796 2935 3.576550 GGGCCCACAAAGAAATTTGTAGA 59.423 43.478 19.95 0.00 42.69 2.59
2838 2977 6.478344 TGTTGTTGTACCAAATGATGCTTTTC 59.522 34.615 0.00 0.00 0.00 2.29
2939 3078 7.557719 AGTCAAAACCTAGTAATGCATATTGCT 59.442 33.333 0.00 0.00 45.31 3.91
2944 3083 8.755028 TCACTAGTCAAAACCTAGTAATGCATA 58.245 33.333 0.00 0.00 42.42 3.14
2966 3105 5.843019 TTCTTTTCTGGAGGGTATTCACT 57.157 39.130 0.00 0.00 0.00 3.41
3060 3199 2.710377 TCCATGCTTGACATACACCAC 58.290 47.619 0.22 0.00 36.64 4.16
3069 3208 2.094894 CGTGAGTTCATCCATGCTTGAC 59.905 50.000 0.22 0.00 0.00 3.18
3148 3291 1.104630 GTGGAGGTTACCGAGGAGAG 58.895 60.000 0.00 0.00 0.00 3.20
3200 3343 1.185618 TGACTGTCCTAAGCTGCGGT 61.186 55.000 5.17 0.00 0.00 5.68
3430 3589 0.828022 ATTGGTCGAACTGGCCGATA 59.172 50.000 0.33 0.00 38.38 2.92
3486 3645 7.332926 CCTGATATCCAGCATGTGATTAACTAC 59.667 40.741 0.00 0.00 41.57 2.73
3632 3791 8.437575 AGTATCTTCTTCTAAAGGGTGTTGAAA 58.562 33.333 0.00 0.00 0.00 2.69
3670 3829 4.431809 TGTGAAAACAAAGCTGATGTTGG 58.568 39.130 16.37 0.00 39.98 3.77
3701 3860 0.178873 AAAGACTCCACCCCCAGCTA 60.179 55.000 0.00 0.00 0.00 3.32
3708 3867 1.248486 GCCTTCAAAAGACTCCACCC 58.752 55.000 0.00 0.00 0.00 4.61
3944 4103 2.159179 TGAGGATGACATTCGGGAGA 57.841 50.000 0.00 0.00 0.00 3.71
3967 4126 4.080695 AGCTGATAGGCTTGTTGATCTTGA 60.081 41.667 0.00 0.00 39.86 3.02
4077 4239 8.352942 ACTTCTTTTAAATGCAAGTAGAACCTG 58.647 33.333 12.76 1.35 0.00 4.00
4373 5110 6.268847 GGTAGAACCATTCTGATCCTAGATGT 59.731 42.308 1.26 0.00 40.94 3.06
4438 5175 2.919602 ACAACTAATCCCCATCACTGGT 59.080 45.455 0.00 0.00 41.37 4.00
4471 5208 8.462016 AGCAATTTAGATGTAAACTTGCCTAAG 58.538 33.333 23.29 0.00 39.85 2.18
4472 5209 8.243426 CAGCAATTTAGATGTAAACTTGCCTAA 58.757 33.333 23.29 0.00 39.85 2.69
4473 5210 7.393234 ACAGCAATTTAGATGTAAACTTGCCTA 59.607 33.333 23.29 0.00 39.85 3.93
4474 5211 6.209391 ACAGCAATTTAGATGTAAACTTGCCT 59.791 34.615 23.29 15.28 39.85 4.75
4475 5212 6.389906 ACAGCAATTTAGATGTAAACTTGCC 58.610 36.000 23.29 14.14 39.85 4.52
4491 5228 9.745018 ATAGGCATTGTTATATAGACAGCAATT 57.255 29.630 0.00 0.00 0.00 2.32
4525 5287 6.375455 CAGTGTCCTTCTTAGTTAATGCCAAT 59.625 38.462 0.00 0.00 0.00 3.16
4790 5620 2.112279 TGTCAGGTAGGGGTGACTTT 57.888 50.000 4.27 0.00 43.03 2.66
4804 5634 8.150296 TGAATGGGATGTACACTTATATGTCAG 58.850 37.037 0.00 0.00 33.85 3.51
4805 5635 8.028652 TGAATGGGATGTACACTTATATGTCA 57.971 34.615 0.00 0.00 33.85 3.58
4807 5637 9.507329 GAATGAATGGGATGTACACTTATATGT 57.493 33.333 0.00 0.00 36.56 2.29
4808 5638 8.659491 CGAATGAATGGGATGTACACTTATATG 58.341 37.037 0.00 0.00 0.00 1.78
4824 5662 8.110612 GCGTGTCTATAATTATCGAATGAATGG 58.889 37.037 0.00 0.00 0.00 3.16
4892 5733 1.382240 CATTAGTGTGGGTGGGCCA 59.618 57.895 0.00 0.00 36.17 5.36
5075 6350 7.334421 ACAATTGCAGGTATGTATCGGATATTC 59.666 37.037 5.05 0.00 0.00 1.75
5083 6359 5.590259 ACCTTGACAATTGCAGGTATGTATC 59.410 40.000 18.58 1.57 0.00 2.24
5355 6631 0.693430 AGGAGGAGATGCTGATGCCA 60.693 55.000 0.00 0.00 38.71 4.92
5484 6760 4.738998 CAGCCCACGCCCATCCAA 62.739 66.667 0.00 0.00 34.57 3.53
5830 7106 2.126307 CAGCCTCCTCGTCACGTG 60.126 66.667 9.94 9.94 0.00 4.49
6033 7354 1.685224 CTGCCTCTAAACCCCAGCA 59.315 57.895 0.00 0.00 0.00 4.41
6071 7393 4.400251 CCCACCTCTCCCTCCCGT 62.400 72.222 0.00 0.00 0.00 5.28
6091 7413 4.492611 GGACCGGATCTAATCGATTTACC 58.507 47.826 17.19 12.90 30.84 2.85
6173 7497 0.180406 GCGCTTAATCTCTTGGGGGA 59.820 55.000 0.00 0.00 0.00 4.81
6178 7502 1.643832 GGCCGCGCTTAATCTCTTG 59.356 57.895 5.56 0.00 0.00 3.02
6244 7848 6.971602 TGATAATGGTTAGCACAAACGAAAA 58.028 32.000 0.00 0.00 0.00 2.29
6281 7885 9.080097 CCATCATCATGCTGATCTATCTATCTA 57.920 37.037 9.07 0.00 34.28 1.98
6282 7886 7.472240 GCCATCATCATGCTGATCTATCTATCT 60.472 40.741 9.07 0.00 34.28 1.98
6283 7887 6.647481 GCCATCATCATGCTGATCTATCTATC 59.353 42.308 9.07 0.00 34.28 2.08
6330 7935 9.173021 TCACAAGAGAAATTTTTGTTAGTGAGA 57.827 29.630 14.00 4.14 33.06 3.27
6333 7938 8.482429 GCATCACAAGAGAAATTTTTGTTAGTG 58.518 33.333 4.37 8.54 33.06 2.74
6598 8204 1.291877 CGTTCTTCTGCTTCGGGGTG 61.292 60.000 0.00 0.00 0.00 4.61
6706 8312 0.108662 GCAAAGAAGGGGGCGATTTG 60.109 55.000 0.00 0.00 34.70 2.32
6772 8378 2.503356 AGAAGACACTTGCTATGGAGGG 59.497 50.000 0.00 0.00 0.00 4.30
6967 8576 5.297547 TGTTTGACGCCTCTTATATGGATC 58.702 41.667 0.00 0.00 0.00 3.36
7058 8667 4.956075 AGAAACAGAGAGAAAGGGCAAAAA 59.044 37.500 0.00 0.00 0.00 1.94
7059 8668 4.339247 CAGAAACAGAGAGAAAGGGCAAAA 59.661 41.667 0.00 0.00 0.00 2.44
7082 8691 6.630444 TTCAGACATTCTACTCCGGTATAC 57.370 41.667 0.00 0.00 0.00 1.47
7160 8770 4.083484 GCTTGCAGTAAACAGTTCCGTAAT 60.083 41.667 0.00 0.00 0.00 1.89
7165 8775 2.878406 TCTGCTTGCAGTAAACAGTTCC 59.122 45.455 20.20 0.00 0.00 3.62
7266 8876 8.349245 TGAAAACAGTACCTTTTGTGTATCATG 58.651 33.333 4.07 0.00 0.00 3.07
7366 8976 8.466798 CAAAGAACCGGGAACTCAATATATTTT 58.533 33.333 6.32 0.00 0.00 1.82
7367 8977 7.416326 GCAAAGAACCGGGAACTCAATATATTT 60.416 37.037 6.32 0.00 0.00 1.40
7368 8978 6.039382 GCAAAGAACCGGGAACTCAATATATT 59.961 38.462 6.32 0.00 0.00 1.28
7373 9145 1.886542 GCAAAGAACCGGGAACTCAAT 59.113 47.619 6.32 0.00 0.00 2.57
7375 9147 0.181587 TGCAAAGAACCGGGAACTCA 59.818 50.000 6.32 0.00 0.00 3.41
7402 9174 5.241506 ACACAAATTCAGGGAACACATACAG 59.758 40.000 0.00 0.00 0.00 2.74
7455 9227 5.105106 TCCCCTCAAACAAAGAAAAAGAACC 60.105 40.000 0.00 0.00 0.00 3.62
7499 9271 2.106511 TCCTCTCTCTTTTTGTGGGTGG 59.893 50.000 0.00 0.00 0.00 4.61
7500 9272 3.406764 CTCCTCTCTCTTTTTGTGGGTG 58.593 50.000 0.00 0.00 0.00 4.61
7503 9275 2.639839 TCCCTCCTCTCTCTTTTTGTGG 59.360 50.000 0.00 0.00 0.00 4.17
7506 9278 4.718961 TGTTTCCCTCCTCTCTCTTTTTG 58.281 43.478 0.00 0.00 0.00 2.44
7508 9280 4.235372 TCTGTTTCCCTCCTCTCTCTTTT 58.765 43.478 0.00 0.00 0.00 2.27
7512 9284 3.772025 TCATTCTGTTTCCCTCCTCTCTC 59.228 47.826 0.00 0.00 0.00 3.20
7515 9287 4.107072 TGATCATTCTGTTTCCCTCCTCT 58.893 43.478 0.00 0.00 0.00 3.69
7516 9288 4.494091 TGATCATTCTGTTTCCCTCCTC 57.506 45.455 0.00 0.00 0.00 3.71
7517 9289 5.455899 GCTATGATCATTCTGTTTCCCTCCT 60.456 44.000 14.65 0.00 0.00 3.69
7518 9290 4.759183 GCTATGATCATTCTGTTTCCCTCC 59.241 45.833 14.65 0.00 0.00 4.30
7520 9292 5.374921 CAGCTATGATCATTCTGTTTCCCT 58.625 41.667 14.65 0.00 0.00 4.20
7537 9309 7.724490 TGTTATGTCATCTATAGCCAGCTAT 57.276 36.000 15.98 15.98 41.58 2.97
7542 9314 7.564793 ACAAGTTGTTATGTCATCTATAGCCA 58.435 34.615 1.64 0.00 0.00 4.75
7558 9331 3.937079 GCCGGTAGCTATAACAAGTTGTT 59.063 43.478 23.85 23.85 40.48 2.83
7563 9336 2.755650 CTGGCCGGTAGCTATAACAAG 58.244 52.381 2.29 0.00 43.05 3.16
7576 9349 5.581085 GTCTAACAATAATATAGCTGGCCGG 59.419 44.000 7.41 7.41 0.00 6.13
7578 9351 7.162082 ACAGTCTAACAATAATATAGCTGGCC 58.838 38.462 0.00 0.00 31.24 5.36
7611 9384 9.299963 GTGGTATACAACGTTACAATATACACA 57.700 33.333 20.89 16.35 32.62 3.72
7612 9385 8.755018 GGTGGTATACAACGTTACAATATACAC 58.245 37.037 20.89 18.40 32.62 2.90
7613 9386 8.694540 AGGTGGTATACAACGTTACAATATACA 58.305 33.333 20.89 12.28 43.31 2.29
7614 9387 9.185192 GAGGTGGTATACAACGTTACAATATAC 57.815 37.037 7.03 10.70 43.31 1.47
7615 9388 8.911965 TGAGGTGGTATACAACGTTACAATATA 58.088 33.333 7.03 0.00 43.31 0.86
7616 9389 7.784037 TGAGGTGGTATACAACGTTACAATAT 58.216 34.615 7.03 0.00 43.31 1.28
7617 9390 7.167924 TGAGGTGGTATACAACGTTACAATA 57.832 36.000 7.03 0.00 43.31 1.90
7618 9391 6.040209 TGAGGTGGTATACAACGTTACAAT 57.960 37.500 7.03 0.00 43.31 2.71
7619 9392 5.465532 TGAGGTGGTATACAACGTTACAA 57.534 39.130 7.03 0.00 43.31 2.41
7620 9393 5.664294 ATGAGGTGGTATACAACGTTACA 57.336 39.130 7.03 2.59 43.31 2.41
7621 9394 9.918630 ATATAATGAGGTGGTATACAACGTTAC 57.081 33.333 7.03 0.00 43.31 2.50
7642 9415 9.333961 GGGGTGGCCTATCACATATATATATAA 57.666 37.037 3.32 0.00 39.27 0.98
7643 9416 8.697529 AGGGGTGGCCTATCACATATATATATA 58.302 37.037 3.32 4.92 39.27 0.86
7644 9417 7.557283 AGGGGTGGCCTATCACATATATATAT 58.443 38.462 3.32 0.00 39.27 0.86
7645 9418 6.945371 AGGGGTGGCCTATCACATATATATA 58.055 40.000 3.32 0.00 39.27 0.86
7646 9419 5.804013 AGGGGTGGCCTATCACATATATAT 58.196 41.667 3.32 0.00 39.27 0.86
7647 9420 5.235003 AGGGGTGGCCTATCACATATATA 57.765 43.478 3.32 0.00 39.27 0.86
7648 9421 4.094216 AGGGGTGGCCTATCACATATAT 57.906 45.455 3.32 0.00 39.27 0.86
7649 9422 3.577968 AGGGGTGGCCTATCACATATA 57.422 47.619 3.32 0.00 39.27 0.86
7650 9423 2.440494 AGGGGTGGCCTATCACATAT 57.560 50.000 3.32 0.00 39.27 1.78
7651 9424 2.453212 TCTAGGGGTGGCCTATCACATA 59.547 50.000 3.32 0.00 39.27 2.29
7652 9425 1.223077 TCTAGGGGTGGCCTATCACAT 59.777 52.381 3.32 0.00 39.27 3.21
7653 9426 0.639943 TCTAGGGGTGGCCTATCACA 59.360 55.000 3.32 0.00 39.27 3.58
7654 9427 1.343069 CTCTAGGGGTGGCCTATCAC 58.657 60.000 3.32 0.00 36.95 3.06
7655 9428 0.191064 CCTCTAGGGGTGGCCTATCA 59.809 60.000 3.32 0.00 0.00 2.15
7656 9429 3.074788 CCTCTAGGGGTGGCCTATC 57.925 63.158 3.32 0.00 0.00 2.08
7667 9440 1.838073 AACCGGCACAACCCTCTAGG 61.838 60.000 0.00 0.00 43.78 3.02
7668 9441 0.391263 GAACCGGCACAACCCTCTAG 60.391 60.000 0.00 0.00 33.26 2.43
7669 9442 1.675219 GAACCGGCACAACCCTCTA 59.325 57.895 0.00 0.00 33.26 2.43
7670 9443 2.430367 GAACCGGCACAACCCTCT 59.570 61.111 0.00 0.00 33.26 3.69
7671 9444 2.671963 GGAACCGGCACAACCCTC 60.672 66.667 0.00 0.00 33.26 4.30
7672 9445 4.280019 GGGAACCGGCACAACCCT 62.280 66.667 0.00 0.00 40.86 4.34
7684 9457 3.202373 AGACAATAGGCTTTAGGGGGAAC 59.798 47.826 0.00 0.00 0.00 3.62
7685 9458 3.470868 AGACAATAGGCTTTAGGGGGAA 58.529 45.455 0.00 0.00 0.00 3.97
7686 9459 3.145559 AGACAATAGGCTTTAGGGGGA 57.854 47.619 0.00 0.00 0.00 4.81
7687 9460 3.953542 AAGACAATAGGCTTTAGGGGG 57.046 47.619 0.00 0.00 0.00 5.40
7688 9461 5.367945 TGTAAGACAATAGGCTTTAGGGG 57.632 43.478 0.00 0.00 0.00 4.79
7689 9462 5.765182 CCATGTAAGACAATAGGCTTTAGGG 59.235 44.000 0.00 0.00 0.00 3.53
7690 9463 6.357367 ACCATGTAAGACAATAGGCTTTAGG 58.643 40.000 0.00 0.00 0.00 2.69
7691 9464 9.209175 GATACCATGTAAGACAATAGGCTTTAG 57.791 37.037 0.00 0.00 0.00 1.85
7692 9465 8.710239 TGATACCATGTAAGACAATAGGCTTTA 58.290 33.333 0.00 0.00 0.00 1.85
7693 9466 7.499232 GTGATACCATGTAAGACAATAGGCTTT 59.501 37.037 0.00 0.00 0.00 3.51
7694 9467 6.992715 GTGATACCATGTAAGACAATAGGCTT 59.007 38.462 0.00 0.00 0.00 4.35
7695 9468 6.525629 GTGATACCATGTAAGACAATAGGCT 58.474 40.000 0.00 0.00 0.00 4.58
7696 9469 5.405571 CGTGATACCATGTAAGACAATAGGC 59.594 44.000 0.00 0.00 0.00 3.93
7697 9470 5.405571 GCGTGATACCATGTAAGACAATAGG 59.594 44.000 0.00 0.00 0.00 2.57
7698 9471 6.216569 AGCGTGATACCATGTAAGACAATAG 58.783 40.000 0.00 0.00 0.00 1.73
7699 9472 6.156748 AGCGTGATACCATGTAAGACAATA 57.843 37.500 0.00 0.00 0.00 1.90
7700 9473 5.023533 AGCGTGATACCATGTAAGACAAT 57.976 39.130 0.00 0.00 0.00 2.71
7701 9474 4.465632 AGCGTGATACCATGTAAGACAA 57.534 40.909 0.00 0.00 0.00 3.18
7702 9475 4.037565 CCTAGCGTGATACCATGTAAGACA 59.962 45.833 0.00 0.00 0.00 3.41
7703 9476 4.037684 ACCTAGCGTGATACCATGTAAGAC 59.962 45.833 0.00 0.00 0.00 3.01
7704 9477 4.212716 ACCTAGCGTGATACCATGTAAGA 58.787 43.478 0.00 0.00 0.00 2.10
7705 9478 4.585955 ACCTAGCGTGATACCATGTAAG 57.414 45.455 0.00 0.00 0.00 2.34
7706 9479 5.506151 CGTAACCTAGCGTGATACCATGTAA 60.506 44.000 0.00 0.00 0.00 2.41
7707 9480 4.023792 CGTAACCTAGCGTGATACCATGTA 60.024 45.833 0.00 0.00 0.00 2.29
7708 9481 3.243301 CGTAACCTAGCGTGATACCATGT 60.243 47.826 0.00 0.00 0.00 3.21
7709 9482 3.243301 ACGTAACCTAGCGTGATACCATG 60.243 47.826 0.00 0.00 40.03 3.66
7710 9483 2.954318 ACGTAACCTAGCGTGATACCAT 59.046 45.455 0.00 0.00 40.03 3.55
7711 9484 2.355756 GACGTAACCTAGCGTGATACCA 59.644 50.000 0.00 0.00 41.70 3.25
7712 9485 2.287248 GGACGTAACCTAGCGTGATACC 60.287 54.545 0.00 0.00 41.70 2.73
7713 9486 2.600792 CGGACGTAACCTAGCGTGATAC 60.601 54.545 0.00 0.00 41.70 2.24
7714 9487 1.599071 CGGACGTAACCTAGCGTGATA 59.401 52.381 0.00 0.00 41.70 2.15
7715 9488 0.379669 CGGACGTAACCTAGCGTGAT 59.620 55.000 0.00 0.00 41.70 3.06
7716 9489 1.796151 CGGACGTAACCTAGCGTGA 59.204 57.895 0.00 0.00 41.70 4.35
7717 9490 1.870901 GCGGACGTAACCTAGCGTG 60.871 63.158 0.00 0.00 41.70 5.34
7718 9491 1.589716 AAGCGGACGTAACCTAGCGT 61.590 55.000 0.00 0.00 44.50 5.07
7719 9492 0.864797 GAAGCGGACGTAACCTAGCG 60.865 60.000 0.00 0.00 0.00 4.26
7720 9493 0.527169 GGAAGCGGACGTAACCTAGC 60.527 60.000 0.00 0.00 0.00 3.42
7721 9494 0.248377 CGGAAGCGGACGTAACCTAG 60.248 60.000 0.00 0.00 0.00 3.02
7722 9495 1.802636 CGGAAGCGGACGTAACCTA 59.197 57.895 0.00 0.00 0.00 3.08
7723 9496 2.570181 CGGAAGCGGACGTAACCT 59.430 61.111 0.00 0.00 0.00 3.50
7735 9508 3.192001 GGTTTAGGGTTTTTAGGCGGAAG 59.808 47.826 0.00 0.00 0.00 3.46
7736 9509 3.156293 GGTTTAGGGTTTTTAGGCGGAA 58.844 45.455 0.00 0.00 0.00 4.30
7737 9510 2.794103 GGTTTAGGGTTTTTAGGCGGA 58.206 47.619 0.00 0.00 0.00 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.