AutoCloner

Multiple sequence alignment - TraesCS5A01G152900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5A01G152900	chr5A	100.000	4693	0	0	1	4693	330190542	330195234	0.000000e+00	8667.0
1	TraesCS5A01G152900	chr5A	92.658	790	58	0	1	790	510442245	510441456	0.000000e+00	1138.0
2	TraesCS5A01G152900	chr5A	92.889	225	11	3	820	1044	330169922	330170141	5.860000e-84	322.0
3	TraesCS5A01G152900	chr5B	96.187	3908	106	19	820	4688	280978311	280982214	0.000000e+00	6351.0
4	TraesCS5A01G152900	chr5B	84.127	63	8	2	782	843	658917235	658917296	5.070000e-05	60.2
5	TraesCS5A01G152900	chr5D	96.037	3911	113	19	820	4693	246296257	246300162	0.000000e+00	6325.0
6	TraesCS5A01G152900	chr5D	90.013	791	74	5	1	790	49298988	49298202	0.000000e+00	1018.0
7	TraesCS5A01G152900	chr5D	95.455	44	2	0	783	826	384072320	384072363	2.340000e-08	71.3
8	TraesCS5A01G152900	chr2B	91.266	790	68	1	1	790	72599115	72598327	0.000000e+00	1075.0
9	TraesCS5A01G152900	chr2B	89.241	790	85	0	1	790	30103513	30102724	0.000000e+00	989.0
10	TraesCS5A01G152900	chr2B	84.030	789	126	0	1	789	38424612	38425400	0.000000e+00	760.0
11	TraesCS5A01G152900	chr6B	91.013	790	71	0	1	790	643535138	643534349	0.000000e+00	1066.0
12	TraesCS5A01G152900	chr6B	88.763	792	85	4	1	790	176294698	176293909	0.000000e+00	966.0
13	TraesCS5A01G152900	chr3B	89.620	790	82	0	1	790	699698254	699697465	0.000000e+00	1005.0
14	TraesCS5A01G152900	chr7A	86.220	791	107	1	1	789	610214947	610215737	0.000000e+00	856.0
15	TraesCS5A01G152900	chr4B	85.593	118	15	2	2201	2317	653520760	653520876	6.380000e-24	122.0
16	TraesCS5A01G152900	chr4B	92.157	51	2	2	789	837	63753969	63754019	2.340000e-08	71.3
17	TraesCS5A01G152900	chr1D	92.000	50	1	3	783	830	396035454	396035502	3.030000e-07	67.6
18	TraesCS5A01G152900	chr1D	85.246	61	7	2	791	850	225552049	225552108	1.410000e-05	62.1
19	TraesCS5A01G152900	chr3D	87.931	58	4	2	791	846	187836338	187836282	1.090000e-06	65.8
20	TraesCS5A01G152900	chr2D	89.091	55	2	4	783	835	384256980	384257032	1.090000e-06	65.8
21	TraesCS5A01G152900	chr7D	85.484	62	7	2	791	851	587812398	587812458	3.920000e-06	63.9
22	TraesCS5A01G152900	chr7B	87.931	58	2	5	783	839	625353454	625353401	3.920000e-06	63.9

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5A01G152900	chr5A	330190542	330195234	4692	False	8667	8667	100.000	1	4693	1	chr5A.!!$F2	4692
1	TraesCS5A01G152900	chr5A	510441456	510442245	789	True	1138	1138	92.658	1	790	1	chr5A.!!$R1	789
2	TraesCS5A01G152900	chr5B	280978311	280982214	3903	False	6351	6351	96.187	820	4688	1	chr5B.!!$F1	3868
3	TraesCS5A01G152900	chr5D	246296257	246300162	3905	False	6325	6325	96.037	820	4693	1	chr5D.!!$F1	3873
4	TraesCS5A01G152900	chr5D	49298202	49298988	786	True	1018	1018	90.013	1	790	1	chr5D.!!$R1	789
5	TraesCS5A01G152900	chr2B	72598327	72599115	788	True	1075	1075	91.266	1	790	1	chr2B.!!$R2	789
6	TraesCS5A01G152900	chr2B	30102724	30103513	789	True	989	989	89.241	1	790	1	chr2B.!!$R1	789
7	TraesCS5A01G152900	chr2B	38424612	38425400	788	False	760	760	84.030	1	789	1	chr2B.!!$F1	788
8	TraesCS5A01G152900	chr6B	643534349	643535138	789	True	1066	1066	91.013	1	790	1	chr6B.!!$R2	789
9	TraesCS5A01G152900	chr6B	176293909	176294698	789	True	966	966	88.763	1	790	1	chr6B.!!$R1	789
10	TraesCS5A01G152900	chr3B	699697465	699698254	789	True	1005	1005	89.620	1	790	1	chr3B.!!$R1	789
11	TraesCS5A01G152900	chr7A	610214947	610215737	790	False	856	856	86.220	1	789	1	chr7A.!!$F1	788

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
914	927	1.265095	CGGGAATGCGAATCAATCCAG	59.735	52.381	1.97	44.84	3.86	F
1533	1549	0.955428	GGGCTGACTTGCACGATTGA	60.955	55.000	0.00	34.04	2.57	F
3331	3371	0.178921	TCTGAAGCCACTCAGGGAGT	60.179	55.000	7.90	44.44	3.85	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
2405	2439	1.406614	CCCATCAGGTGTTCTCTGAGC	60.407	57.143	0.00	43.45	4.26	R
3493	3533	0.106819	GCAGATGAGGGATGCCAAGT	60.107	55.000	5.86	33.81	3.16	R
4416	4468	1.127567	AAGGGTGCAGGTGCTGACTA	61.128	55.000	3.18	42.66	2.59	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
92	93	2.034124	AGCCGGTTCGTTATAGCCTTA	58.966	47.619	1.90	0.00	0.00	2.69
131	132	2.342650	CGGGCACAAGACAATGGGG	61.343	63.158	0.00	0.00	0.00	4.96
139	140	3.003689	CACAAGACAATGGGGCGATATTC	59.996	47.826	0.00	0.00	0.00	1.75
324	325	2.759114	CAGGAGCTTTGGAGGGCA	59.241	61.111	0.00	0.00	0.00	5.36
345	346	1.741770	ATCTGAAACAGCGCGACCC	60.742	57.895	12.10	0.00	0.00	4.46
357	358	2.716017	GCGACCCTGACCTCCTCTG	61.716	68.421	0.00	0.00	0.00	3.35
494	497	4.377897	AGTTTTGTACCTCTTCCTTGTCG	58.622	43.478	0.00	0.00	0.00	4.35
642	645	3.110178	GGGACCGTTGTCGAAGCG	61.110	66.667	0.00	0.00	42.73	4.68
720	724	3.315140	TCGGACCGGTGCCAATGA	61.315	61.111	21.44	8.99	0.00	2.57
755	759	1.661341	GATCCAGTCGCTTCTGCAAT	58.339	50.000	0.00	0.00	39.64	3.56
790	794	2.037251	GTGTCAGACTGCCAAACTCCTA	59.963	50.000	1.31	0.00	0.00	2.94
791	795	2.703536	TGTCAGACTGCCAAACTCCTAA	59.296	45.455	1.31	0.00	0.00	2.69
792	796	3.135712	TGTCAGACTGCCAAACTCCTAAA	59.864	43.478	1.31	0.00	0.00	1.85
793	797	4.134563	GTCAGACTGCCAAACTCCTAAAA	58.865	43.478	0.00	0.00	0.00	1.52
794	798	4.214332	GTCAGACTGCCAAACTCCTAAAAG	59.786	45.833	0.00	0.00	0.00	2.27
795	799	4.102524	TCAGACTGCCAAACTCCTAAAAGA	59.897	41.667	0.00	0.00	0.00	2.52
796	800	4.214332	CAGACTGCCAAACTCCTAAAAGAC	59.786	45.833	0.00	0.00	0.00	3.01
797	801	4.103311	AGACTGCCAAACTCCTAAAAGACT	59.897	41.667	0.00	0.00	0.00	3.24
798	802	4.793201	ACTGCCAAACTCCTAAAAGACTT	58.207	39.130	0.00	0.00	0.00	3.01
799	803	5.937111	ACTGCCAAACTCCTAAAAGACTTA	58.063	37.500	0.00	0.00	0.00	2.24
800	804	6.543735	ACTGCCAAACTCCTAAAAGACTTAT	58.456	36.000	0.00	0.00	0.00	1.73
801	805	7.686434	ACTGCCAAACTCCTAAAAGACTTATA	58.314	34.615	0.00	0.00	0.00	0.98
802	806	8.329502	ACTGCCAAACTCCTAAAAGACTTATAT	58.670	33.333	0.00	0.00	0.00	0.86
803	807	9.178758	CTGCCAAACTCCTAAAAGACTTATATT	57.821	33.333	0.00	0.00	0.00	1.28
804	808	9.528489	TGCCAAACTCCTAAAAGACTTATATTT	57.472	29.630	0.00	0.00	0.00	1.40
815	819	8.959705	AAAAGACTTATATTTAGGAACGGAGG	57.040	34.615	0.00	0.00	0.00	4.30
816	820	6.667558	AGACTTATATTTAGGAACGGAGGG	57.332	41.667	0.00	0.00	0.00	4.30
817	821	6.379579	AGACTTATATTTAGGAACGGAGGGA	58.620	40.000	0.00	0.00	0.00	4.20
818	822	6.494146	AGACTTATATTTAGGAACGGAGGGAG	59.506	42.308	0.00	0.00	0.00	4.30
823	827	3.393426	TTAGGAACGGAGGGAGTACAT	57.607	47.619	0.00	0.00	0.00	2.29
883	890	4.637483	TGCAACTTGTTTGAGAAAGAGG	57.363	40.909	0.00	0.00	37.39	3.69
884	891	3.181487	TGCAACTTGTTTGAGAAAGAGGC	60.181	43.478	0.00	0.00	37.39	4.70
914	927	1.265095	CGGGAATGCGAATCAATCCAG	59.735	52.381	1.97	0.00	44.84	3.86
1419	1435	3.824806	GTCCTTGTCGACGTCACG	58.175	61.111	17.16	2.92	0.00	4.35
1533	1549	0.955428	GGGCTGACTTGCACGATTGA	60.955	55.000	0.00	0.00	34.04	2.57
1655	1671	6.072508	TGGAGCACTTGAAACTGATTTGTATC	60.073	38.462	0.00	0.00	0.00	2.24
1851	1868	8.623310	TTGGAAAAACGAGAAATTGTTCTTAC	57.377	30.769	0.00	0.00	44.42	2.34
1973	2006	7.814587	GGTTCCTTTTAATGATTTCCTGTTCTG	59.185	37.037	0.00	0.00	0.00	3.02
2095	2128	6.119536	TCATGCAAGGGTATTTCTAACGATT	58.880	36.000	0.00	0.00	0.00	3.34
2102	2135	9.595823	CAAGGGTATTTCTAACGATTTCTTCTA	57.404	33.333	0.00	0.00	0.00	2.10
2146	2179	8.029782	TGGTGGTTATTATCAGCTGTACTATT	57.970	34.615	14.67	3.97	33.13	1.73
2550	2584	3.835395	GGACCAGTTAGAGCATAGCCTAT	59.165	47.826	0.00	0.00	0.00	2.57
2591	2625	8.723942	ATACATACAAAATTGACCAGAGAGAC	57.276	34.615	0.00	0.00	0.00	3.36
2896	2936	7.500892	TCTTTAGCAACTGAACCTATTCAAACA	59.499	33.333	0.00	0.00	44.28	2.83
3073	3113	0.256752	TCCATTGGCCACAGGATCAG	59.743	55.000	19.07	0.00	0.00	2.90
3095	3135	3.856638	GCAGGCTCTATCTCATCACTTCG	60.857	52.174	0.00	0.00	0.00	3.79
3239	3279	1.830279	TCTGAAAATGCTGCTCCCAG	58.170	50.000	0.00	1.91	42.13	4.45
3331	3371	0.178921	TCTGAAGCCACTCAGGGAGT	60.179	55.000	7.90	0.00	44.44	3.85
3408	3448	6.700960	CAGAGCGTGATATCAGAAGATTTTCT	59.299	38.462	5.42	0.00	44.45	2.52
3493	3533	6.092122	CAGATTGTTTCGCATAGAGGTTTGTA	59.908	38.462	0.00	0.00	0.00	2.41
4056	4108	4.189231	GGCTATCTTACCGTTGTGATTGT	58.811	43.478	0.00	0.00	0.00	2.71
4062	4114	6.534475	TCTTACCGTTGTGATTGTATAGGT	57.466	37.500	0.00	0.00	34.78	3.08
4100	4152	3.657398	ATGATCTTGGTCATCTTGCCA	57.343	42.857	0.00	0.00	33.69	4.92
4217	4269	7.501225	TCTCAGACGGAAGAACATATACATGTA	59.499	37.037	8.27	8.27	44.83	2.29
4416	4468	7.040478	TGTTGATCGAATTCTCCTTTTTGTCAT	60.040	33.333	3.52	0.00	0.00	3.06
4423	4475	6.749923	ATTCTCCTTTTTGTCATAGTCAGC	57.250	37.500	0.00	0.00	0.00	4.26
4486	4538	3.747099	ATTTCTTTGTGGAGATTCGCG	57.253	42.857	0.00	0.00	0.00	5.87
4562	4614	4.766373	TCAGCCTGCATGAAACAGATAAAA	59.234	37.500	0.00	0.00	37.32	1.52
4643	4695	5.233083	TGCACTATTATTGCAGCTAGGAT	57.767	39.130	4.73	0.00	45.06	3.24
4680	4732	1.322442	AGCTGGTCTTTGAAACTGGC	58.678	50.000	0.00	0.00	0.00	4.85
4688	4740	4.479619	GTCTTTGAAACTGGCATGATGAC	58.520	43.478	0.00	0.00	0.00	3.06

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
38	39	7.576403	TGATGGATTTGATAATCAGTGAGGAA	58.424	34.615	0.00	0.00	41.62	3.36
92	93	2.229784	GGTGCTTTACAAGATTGCAGCT	59.770	45.455	7.98	0.00	45.14	4.24
123	124	2.172505	TCACAGAATATCGCCCCATTGT	59.827	45.455	0.00	0.00	0.00	2.71
131	132	3.369147	CCCAATCGATCACAGAATATCGC	59.631	47.826	0.00	0.00	43.57	4.58
139	140	0.541392	TCACCCCCAATCGATCACAG	59.459	55.000	0.00	0.00	0.00	3.66
324	325	1.005037	TCGCGCTGTTTCAGATGGT	60.005	52.632	5.56	0.00	32.44	3.55
345	346	0.965866	TACACGGCAGAGGAGGTCAG	60.966	60.000	0.00	0.00	0.00	3.51
357	358	3.340928	AGTTGAATAAACCCTACACGGC	58.659	45.455	0.00	0.00	39.85	5.68
494	497	5.050490	TCTACTTGTGCTTCTGAAAGTGAC	58.950	41.667	2.72	0.00	34.76	3.67
542	545	5.516339	CCAACGCAAACAAATGAATAGGATC	59.484	40.000	0.00	0.00	0.00	3.36
555	558	2.422231	AAGCAGCCCAACGCAAACA	61.422	52.632	0.00	0.00	41.38	2.83
642	645	3.066481	GCCTTGCATCAGGAAGAAATCTC	59.934	47.826	8.71	0.00	45.07	2.75
720	724	2.830704	GATCGTCCTCGTTGCCGGTT	62.831	60.000	1.90	0.00	38.33	4.44
790	794	7.991460	CCCTCCGTTCCTAAATATAAGTCTTTT	59.009	37.037	0.00	0.00	0.00	2.27
791	795	7.346436	TCCCTCCGTTCCTAAATATAAGTCTTT	59.654	37.037	0.00	0.00	0.00	2.52
792	796	6.842807	TCCCTCCGTTCCTAAATATAAGTCTT	59.157	38.462	0.00	0.00	0.00	3.01
793	797	6.379579	TCCCTCCGTTCCTAAATATAAGTCT	58.620	40.000	0.00	0.00	0.00	3.24
794	798	6.267242	ACTCCCTCCGTTCCTAAATATAAGTC	59.733	42.308	0.00	0.00	0.00	3.01
795	799	6.141790	ACTCCCTCCGTTCCTAAATATAAGT	58.858	40.000	0.00	0.00	0.00	2.24
796	800	6.667558	ACTCCCTCCGTTCCTAAATATAAG	57.332	41.667	0.00	0.00	0.00	1.73
797	801	7.068702	TGTACTCCCTCCGTTCCTAAATATAA	58.931	38.462	0.00	0.00	0.00	0.98
798	802	6.613699	TGTACTCCCTCCGTTCCTAAATATA	58.386	40.000	0.00	0.00	0.00	0.86
799	803	5.461327	TGTACTCCCTCCGTTCCTAAATAT	58.539	41.667	0.00	0.00	0.00	1.28
800	804	4.870636	TGTACTCCCTCCGTTCCTAAATA	58.129	43.478	0.00	0.00	0.00	1.40
801	805	3.716431	TGTACTCCCTCCGTTCCTAAAT	58.284	45.455	0.00	0.00	0.00	1.40
802	806	3.173953	TGTACTCCCTCCGTTCCTAAA	57.826	47.619	0.00	0.00	0.00	1.85
803	807	2.905415	TGTACTCCCTCCGTTCCTAA	57.095	50.000	0.00	0.00	0.00	2.69
804	808	2.242965	TGATGTACTCCCTCCGTTCCTA	59.757	50.000	0.00	0.00	0.00	2.94
805	809	1.006758	TGATGTACTCCCTCCGTTCCT	59.993	52.381	0.00	0.00	0.00	3.36
806	810	1.409427	CTGATGTACTCCCTCCGTTCC	59.591	57.143	0.00	0.00	0.00	3.62
807	811	2.376109	TCTGATGTACTCCCTCCGTTC	58.624	52.381	0.00	0.00	0.00	3.95
808	812	2.526888	TCTGATGTACTCCCTCCGTT	57.473	50.000	0.00	0.00	0.00	4.44
809	813	2.526888	TTCTGATGTACTCCCTCCGT	57.473	50.000	0.00	0.00	0.00	4.69
810	814	3.889538	TGTATTCTGATGTACTCCCTCCG	59.110	47.826	0.00	0.00	0.00	4.63
811	815	5.871396	TTGTATTCTGATGTACTCCCTCC	57.129	43.478	0.00	0.00	0.00	4.30
812	816	7.873505	GGTATTTGTATTCTGATGTACTCCCTC	59.126	40.741	0.00	0.00	0.00	4.30
813	817	7.202102	GGGTATTTGTATTCTGATGTACTCCCT	60.202	40.741	0.00	0.00	0.00	4.20
814	818	6.935208	GGGTATTTGTATTCTGATGTACTCCC	59.065	42.308	0.00	0.00	0.00	4.30
815	819	7.506114	TGGGTATTTGTATTCTGATGTACTCC	58.494	38.462	0.00	0.00	0.00	3.85
816	820	8.993121	CATGGGTATTTGTATTCTGATGTACTC	58.007	37.037	0.00	0.00	0.00	2.59
817	821	8.713971	TCATGGGTATTTGTATTCTGATGTACT	58.286	33.333	0.00	0.00	0.00	2.73
818	822	8.902540	TCATGGGTATTTGTATTCTGATGTAC	57.097	34.615	0.00	0.00	0.00	2.90
894	907	1.265095	CTGGATTGATTCGCATTCCCG	59.735	52.381	0.00	0.00	43.34	5.14
914	927	6.578944	AGGACAAAAATGTTTAACTCCAACC	58.421	36.000	0.00	0.00	0.00	3.77
1561	1577	6.954232	TCTCGTCCCTAAATTGAATTAAGGT	58.046	36.000	0.00	0.00	0.00	3.50
1600	1616	4.503741	TGTTTTAGCTGAATGCCTCAAC	57.496	40.909	0.00	0.00	44.23	3.18
1892	1925	3.873910	AGCAAAACTACAGTGTGACACT	58.126	40.909	13.33	13.33	46.51	3.55
1894	1927	5.179533	TGTTAGCAAAACTACAGTGTGACA	58.820	37.500	5.88	0.00	0.00	3.58
1930	1963	8.575649	AAAGGAACCTATAATTTGTGTGTAGG	57.424	34.615	0.00	0.00	38.28	3.18
1992	2025	5.448632	GCCATGGCTGTACTAACATAAACAC	60.449	44.000	29.98	0.00	38.26	3.32
2095	2128	5.386924	GCATCCTACTCCCTACTAGAAGAA	58.613	45.833	0.00	0.00	0.00	2.52
2102	2135	2.614259	CATGGCATCCTACTCCCTACT	58.386	52.381	0.00	0.00	0.00	2.57
2146	2179	4.922206	AGTAACTTCAAGGATGCATTGGA	58.078	39.130	0.00	0.00	0.00	3.53
2405	2439	1.406614	CCCATCAGGTGTTCTCTGAGC	60.407	57.143	0.00	0.00	43.45	4.26
2591	2625	3.859961	CACGTGTAGGTCTTATGCTTGAG	59.140	47.826	7.58	0.00	0.00	3.02
2768	2802	5.319453	TGATTTTGTCAAGCAGGAGAGAAT	58.681	37.500	0.00	0.00	32.78	2.40
2896	2936	8.150945	TGTTTTCTGCTACTTCTAGATGTTTCT	58.849	33.333	15.71	0.00	35.90	2.52
2945	2985	7.531857	TGCAGGGTGAATAAAAATGAGTTAA	57.468	32.000	0.00	0.00	0.00	2.01
3073	3113	3.652274	GAAGTGATGAGATAGAGCCTGC	58.348	50.000	0.00	0.00	0.00	4.85
3095	3135	1.136057	CGCCCAAGTAAAAGCGTTCTC	60.136	52.381	0.00	0.00	43.45	2.87
3239	3279	2.430332	AGTGCATCTAGCTCAGGAGAAC	59.570	50.000	0.00	0.00	45.94	3.01
3331	3371	0.831966	GCATGGCCATGAATCCCAAA	59.168	50.000	43.18	0.87	41.20	3.28
3408	3448	4.692228	ACGTTTTTAGGAACTCGGTAACA	58.308	39.130	0.00	0.00	41.75	2.41
3493	3533	0.106819	GCAGATGAGGGATGCCAAGT	60.107	55.000	5.86	0.00	33.81	3.16
3779	3826	3.895232	ATTTCTAGAGAGGCTCGCAAA	57.105	42.857	20.44	12.08	35.36	3.68
4078	4130	4.454678	TGGCAAGATGACCAAGATCATAC	58.545	43.478	0.00	0.00	39.48	2.39
4100	4152	9.705290	AAAAGAAAATCGGCTAATGTTTTACAT	57.295	25.926	0.00	0.00	41.31	2.29
4217	4269	2.388735	TCTGCTGTTCCGTCTGGATAT	58.611	47.619	0.00	0.00	45.91	1.63
4364	4416	3.792956	CGCCAAACATAATCAGCAATGTC	59.207	43.478	0.00	0.00	35.30	3.06
4416	4468	1.127567	AAGGGTGCAGGTGCTGACTA	61.128	55.000	3.18	0.00	42.66	2.59
4423	4475	5.010282	AGAAATTAGTTAAGGGTGCAGGTG	58.990	41.667	0.00	0.00	0.00	4.00
4466	4518	3.074412	ACGCGAATCTCCACAAAGAAAT	58.926	40.909	15.93	0.00	0.00	2.17
4484	4536	3.802685	AGACTGAAACAGAAACTGTACGC	59.197	43.478	4.84	0.00	44.62	4.42
4486	4538	6.514063	AGGTAGACTGAAACAGAAACTGTAC	58.486	40.000	4.84	4.05	44.62	2.90
4623	4675	7.918536	AATCATCCTAGCTGCAATAATAGTG	57.081	36.000	1.02	0.00	0.00	2.74
4643	4695	4.507710	CAGCTAACTTGGACAGCTAATCA	58.492	43.478	0.00	0.00	43.66	2.57

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.