Multiple sequence alignment - TraesCS5A01G152400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G152400 chr5A 100.000 4339 0 0 1 4339 329377423 329381761 0.000000e+00 8013.0
1 TraesCS5A01G152400 chr5A 84.162 543 61 13 1063 1595 602965546 602965019 1.800000e-138 503.0
2 TraesCS5A01G152400 chr5A 93.443 61 1 1 3833 3890 329381198 329381258 2.150000e-13 87.9
3 TraesCS5A01G152400 chr5A 93.443 61 1 1 3776 3836 329381255 329381312 2.150000e-13 87.9
4 TraesCS5A01G152400 chr5B 90.666 2839 136 57 617 3389 278794976 278797751 0.000000e+00 3655.0
5 TraesCS5A01G152400 chr5B 85.638 376 36 11 230 604 278792426 278792784 3.170000e-101 379.0
6 TraesCS5A01G152400 chr5B 78.371 356 41 21 3397 3724 278797802 278798149 9.520000e-47 198.0
7 TraesCS5A01G152400 chr5B 90.722 97 9 0 1574 1670 141777570 141777474 3.520000e-26 130.0
8 TraesCS5A01G152400 chr5D 92.850 1874 78 19 555 2385 245376669 245378529 0.000000e+00 2667.0
9 TraesCS5A01G152400 chr5D 92.308 884 39 10 2510 3387 245378596 245379456 0.000000e+00 1229.0
10 TraesCS5A01G152400 chr5D 84.289 401 50 4 3950 4339 245380851 245381249 3.170000e-101 379.0
11 TraesCS5A01G152400 chr7A 98.104 211 4 0 1 211 387169062 387169272 6.860000e-98 368.0
12 TraesCS5A01G152400 chr6A 98.104 211 4 0 1 211 109931759 109931549 6.860000e-98 368.0
13 TraesCS5A01G152400 chr6A 97.642 212 5 0 1 212 30822472 30822261 8.870000e-97 364.0
14 TraesCS5A01G152400 chr2A 98.104 211 4 0 1 211 700393224 700393014 6.860000e-98 368.0
15 TraesCS5A01G152400 chr2A 96.380 221 7 1 1 221 713513619 713513838 3.190000e-96 363.0
16 TraesCS5A01G152400 chr2A 81.507 146 16 10 2565 2707 699621955 699622092 4.590000e-20 110.0
17 TraesCS5A01G152400 chr3A 97.642 212 5 0 1 212 502189425 502189214 8.870000e-97 364.0
18 TraesCS5A01G152400 chr3A 97.222 216 5 1 1 215 585506817 585506602 8.870000e-97 364.0
19 TraesCS5A01G152400 chr1A 97.642 212 5 0 1 212 454972696 454972485 8.870000e-97 364.0
20 TraesCS5A01G152400 chr1A 96.759 216 7 0 1 216 534793985 534793770 1.150000e-95 361.0
21 TraesCS5A01G152400 chr3D 86.567 335 28 11 1063 1389 560151739 560152064 1.920000e-93 353.0
22 TraesCS5A01G152400 chr4B 79.938 324 42 9 1064 1377 180944723 180944413 2.630000e-52 217.0
23 TraesCS5A01G152400 chr4B 91.753 97 8 0 1574 1670 180944223 180944127 7.570000e-28 135.0
24 TraesCS5A01G152400 chr4B 90.000 100 9 1 2574 2673 180941559 180941461 1.270000e-25 128.0
25 TraesCS5A01G152400 chr4D 79.876 323 38 12 1064 1377 118434921 118434617 1.220000e-50 211.0
26 TraesCS5A01G152400 chr4D 84.545 220 25 3 1643 1854 58393711 58393929 4.400000e-50 209.0
27 TraesCS5A01G152400 chr4D 75.214 468 72 32 1574 2010 118434427 118433973 9.590000e-42 182.0
28 TraesCS5A01G152400 chr4D 88.073 109 13 0 2565 2673 118433540 118433432 3.520000e-26 130.0
29 TraesCS5A01G152400 chr4D 82.609 138 15 6 2569 2703 294387524 294387655 3.550000e-21 113.0
30 TraesCS5A01G152400 chr4D 96.774 31 1 0 1084 1114 353844223 353844193 8.000000e-03 52.8
31 TraesCS5A01G152400 chr4A 93.571 140 9 0 1238 1377 455022870 455023009 4.400000e-50 209.0
32 TraesCS5A01G152400 chr4A 93.684 95 6 0 1574 1668 455023199 455023293 4.520000e-30 143.0
33 TraesCS5A01G152400 chr4A 88.991 109 11 1 2565 2673 455028352 455028459 2.720000e-27 134.0
34 TraesCS5A01G152400 chr4A 88.660 97 11 0 1574 1670 715213155 715213059 7.620000e-23 119.0
35 TraesCS5A01G152400 chr7B 88.660 97 11 0 1574 1670 398826392 398826296 7.620000e-23 119.0
36 TraesCS5A01G152400 chr2D 83.459 133 11 10 2565 2694 558978882 558979006 3.550000e-21 113.0
37 TraesCS5A01G152400 chr2D 81.884 138 16 6 2569 2703 325649992 325649861 1.650000e-19 108.0
38 TraesCS5A01G152400 chr6B 77.670 103 22 1 3952 4054 695945979 695946080 1.300000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G152400 chr5A 329377423 329381761 4338 False 2729.600000 8013 95.628667 1 4339 3 chr5A.!!$F1 4338
1 TraesCS5A01G152400 chr5A 602965019 602965546 527 True 503.000000 503 84.162000 1063 1595 1 chr5A.!!$R1 532
2 TraesCS5A01G152400 chr5B 278792426 278798149 5723 False 1410.666667 3655 84.891667 230 3724 3 chr5B.!!$F1 3494
3 TraesCS5A01G152400 chr5D 245376669 245381249 4580 False 1425.000000 2667 89.815667 555 4339 3 chr5D.!!$F1 3784

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
292 293 0.031449 TCTGCGTCACATCACGAACA 59.969 50.0 0.0 0.0 42.69 3.18 F
456 457 0.391130 TGTCACGAGCTGGGCAATAC 60.391 55.0 0.0 0.0 0.00 1.89 F
1682 3908 0.974383 AAGTAAGTCCCCACTCACCG 59.026 55.0 0.0 0.0 29.93 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1961 4196 0.171231 TCTCAGCATGGTCGAACTCG 59.829 55.000 0.33 0.0 37.44 4.18 R
2278 4515 1.620819 TCTGACCTCTCCTCAACAAGC 59.379 52.381 0.00 0.0 0.00 4.01 R
3590 6255 0.109735 TTGTGCGTCGCTGAGAGTAG 60.110 55.000 19.50 0.0 0.00 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 4.125695 GTCCGTTCGGCGCTAGGT 62.126 66.667 7.64 0.00 39.71 3.08
33 34 3.818787 TCCGTTCGGCGCTAGGTC 61.819 66.667 7.64 0.00 39.71 3.85
34 35 4.124351 CCGTTCGGCGCTAGGTCA 62.124 66.667 7.64 0.00 39.71 4.02
35 36 2.104331 CGTTCGGCGCTAGGTCAT 59.896 61.111 7.64 0.00 0.00 3.06
36 37 1.944676 CGTTCGGCGCTAGGTCATC 60.945 63.158 7.64 0.00 0.00 2.92
37 38 1.944676 GTTCGGCGCTAGGTCATCG 60.945 63.158 7.64 0.00 0.00 3.84
38 39 3.133767 TTCGGCGCTAGGTCATCGG 62.134 63.158 7.64 0.00 0.00 4.18
39 40 3.900892 CGGCGCTAGGTCATCGGT 61.901 66.667 7.64 0.00 0.00 4.69
40 41 2.279517 GGCGCTAGGTCATCGGTG 60.280 66.667 7.64 0.00 0.00 4.94
41 42 2.782222 GGCGCTAGGTCATCGGTGA 61.782 63.158 7.64 0.00 0.00 4.02
42 43 1.364171 GCGCTAGGTCATCGGTGAT 59.636 57.895 0.00 0.00 36.60 3.06
43 44 0.249489 GCGCTAGGTCATCGGTGATT 60.249 55.000 0.00 0.00 36.60 2.57
44 45 1.806623 GCGCTAGGTCATCGGTGATTT 60.807 52.381 0.00 0.00 36.60 2.17
45 46 1.860950 CGCTAGGTCATCGGTGATTTG 59.139 52.381 0.00 0.00 36.60 2.32
46 47 2.213499 GCTAGGTCATCGGTGATTTGG 58.787 52.381 0.00 0.00 36.60 3.28
47 48 2.158957 GCTAGGTCATCGGTGATTTGGA 60.159 50.000 0.00 0.00 36.60 3.53
48 49 3.495100 GCTAGGTCATCGGTGATTTGGAT 60.495 47.826 0.00 0.00 36.60 3.41
49 50 3.199880 AGGTCATCGGTGATTTGGATC 57.800 47.619 0.00 0.00 36.60 3.36
50 51 2.505407 AGGTCATCGGTGATTTGGATCA 59.495 45.455 0.00 0.00 39.92 2.92
57 58 3.064079 TGATTTGGATCACGGCGAG 57.936 52.632 16.62 5.72 37.37 5.03
58 59 0.249120 TGATTTGGATCACGGCGAGT 59.751 50.000 16.62 0.00 37.37 4.18
59 60 1.478916 TGATTTGGATCACGGCGAGTA 59.521 47.619 16.62 0.00 37.37 2.59
60 61 1.859080 GATTTGGATCACGGCGAGTAC 59.141 52.381 16.62 4.40 32.33 2.73
61 62 0.457166 TTTGGATCACGGCGAGTACG 60.457 55.000 16.62 0.00 42.93 3.67
62 63 1.307355 TTGGATCACGGCGAGTACGA 61.307 55.000 16.62 1.74 42.66 3.43
63 64 1.298190 GGATCACGGCGAGTACGAC 60.298 63.158 16.62 0.00 45.02 4.34
64 65 1.712977 GGATCACGGCGAGTACGACT 61.713 60.000 16.62 0.00 46.46 4.18
65 66 0.316032 GATCACGGCGAGTACGACTC 60.316 60.000 16.62 0.00 46.46 3.36
66 67 1.712977 ATCACGGCGAGTACGACTCC 61.713 60.000 16.62 0.00 46.46 3.85
67 68 2.359107 ACGGCGAGTACGACTCCA 60.359 61.111 16.62 0.00 46.46 3.86
68 69 1.748122 ACGGCGAGTACGACTCCAT 60.748 57.895 16.62 0.00 46.46 3.41
69 70 1.009900 CGGCGAGTACGACTCCATC 60.010 63.158 0.00 1.13 46.46 3.51
70 71 1.712018 CGGCGAGTACGACTCCATCA 61.712 60.000 0.00 0.00 46.46 3.07
71 72 0.454600 GGCGAGTACGACTCCATCAA 59.545 55.000 8.73 0.00 45.04 2.57
72 73 1.546834 GCGAGTACGACTCCATCAAC 58.453 55.000 8.73 0.00 42.12 3.18
73 74 1.798079 GCGAGTACGACTCCATCAACC 60.798 57.143 8.73 0.00 42.12 3.77
74 75 1.202268 CGAGTACGACTCCATCAACCC 60.202 57.143 8.73 0.00 42.12 4.11
75 76 1.136500 GAGTACGACTCCATCAACCCC 59.864 57.143 0.00 0.00 39.28 4.95
76 77 0.179119 GTACGACTCCATCAACCCCG 60.179 60.000 0.00 0.00 0.00 5.73
77 78 0.612732 TACGACTCCATCAACCCCGT 60.613 55.000 0.00 0.00 0.00 5.28
78 79 1.295423 CGACTCCATCAACCCCGTT 59.705 57.895 0.00 0.00 0.00 4.44
79 80 0.739813 CGACTCCATCAACCCCGTTC 60.740 60.000 0.00 0.00 0.00 3.95
80 81 0.613777 GACTCCATCAACCCCGTTCT 59.386 55.000 0.00 0.00 0.00 3.01
81 82 0.613777 ACTCCATCAACCCCGTTCTC 59.386 55.000 0.00 0.00 0.00 2.87
82 83 0.905357 CTCCATCAACCCCGTTCTCT 59.095 55.000 0.00 0.00 0.00 3.10
83 84 1.279271 CTCCATCAACCCCGTTCTCTT 59.721 52.381 0.00 0.00 0.00 2.85
84 85 1.003118 TCCATCAACCCCGTTCTCTTG 59.997 52.381 0.00 0.00 0.00 3.02
85 86 1.003118 CCATCAACCCCGTTCTCTTGA 59.997 52.381 0.00 0.00 0.00 3.02
86 87 2.552155 CCATCAACCCCGTTCTCTTGAA 60.552 50.000 0.00 0.00 0.00 2.69
87 88 2.249844 TCAACCCCGTTCTCTTGAAC 57.750 50.000 0.00 0.00 46.59 3.18
95 96 0.164002 GTTCTCTTGAACGCTTCCGC 59.836 55.000 0.00 0.00 42.39 5.54
111 112 3.330853 GCGCGCGATCTACAAGGG 61.331 66.667 37.18 0.00 0.00 3.95
112 113 2.104331 CGCGCGATCTACAAGGGT 59.896 61.111 28.94 0.00 0.00 4.34
113 114 1.357690 CGCGCGATCTACAAGGGTA 59.642 57.895 28.94 0.00 0.00 3.69
114 115 0.039437 CGCGCGATCTACAAGGGTAT 60.039 55.000 28.94 0.00 0.00 2.73
115 116 1.419374 GCGCGATCTACAAGGGTATG 58.581 55.000 12.10 0.00 0.00 2.39
116 117 1.269621 GCGCGATCTACAAGGGTATGT 60.270 52.381 12.10 0.00 37.32 2.29
117 118 2.030540 GCGCGATCTACAAGGGTATGTA 60.031 50.000 12.10 0.00 34.75 2.29
126 127 4.408182 ACAAGGGTATGTAGATGCACTC 57.592 45.455 0.00 0.00 25.83 3.51
127 128 3.134804 ACAAGGGTATGTAGATGCACTCC 59.865 47.826 0.00 0.00 25.83 3.85
128 129 2.330216 AGGGTATGTAGATGCACTCCC 58.670 52.381 0.00 0.00 35.94 4.30
129 130 1.348036 GGGTATGTAGATGCACTCCCC 59.652 57.143 0.00 0.00 32.31 4.81
130 131 2.330216 GGTATGTAGATGCACTCCCCT 58.670 52.381 0.00 0.00 0.00 4.79
131 132 2.300437 GGTATGTAGATGCACTCCCCTC 59.700 54.545 0.00 0.00 0.00 4.30
132 133 2.485966 ATGTAGATGCACTCCCCTCT 57.514 50.000 0.00 0.00 0.00 3.69
133 134 1.781786 TGTAGATGCACTCCCCTCTC 58.218 55.000 0.00 0.00 0.00 3.20
134 135 1.044611 GTAGATGCACTCCCCTCTCC 58.955 60.000 0.00 0.00 0.00 3.71
135 136 0.105453 TAGATGCACTCCCCTCTCCC 60.105 60.000 0.00 0.00 0.00 4.30
136 137 1.383803 GATGCACTCCCCTCTCCCT 60.384 63.158 0.00 0.00 0.00 4.20
137 138 1.383803 ATGCACTCCCCTCTCCCTC 60.384 63.158 0.00 0.00 0.00 4.30
138 139 3.151022 GCACTCCCCTCTCCCTCG 61.151 72.222 0.00 0.00 0.00 4.63
139 140 2.360980 CACTCCCCTCTCCCTCGT 59.639 66.667 0.00 0.00 0.00 4.18
140 141 1.305381 CACTCCCCTCTCCCTCGTT 60.305 63.158 0.00 0.00 0.00 3.85
141 142 1.305381 ACTCCCCTCTCCCTCGTTG 60.305 63.158 0.00 0.00 0.00 4.10
142 143 2.683933 TCCCCTCTCCCTCGTTGC 60.684 66.667 0.00 0.00 0.00 4.17
143 144 2.685380 CCCCTCTCCCTCGTTGCT 60.685 66.667 0.00 0.00 0.00 3.91
144 145 1.381327 CCCCTCTCCCTCGTTGCTA 60.381 63.158 0.00 0.00 0.00 3.49
145 146 1.395826 CCCCTCTCCCTCGTTGCTAG 61.396 65.000 0.00 0.00 0.00 3.42
146 147 0.395862 CCCTCTCCCTCGTTGCTAGA 60.396 60.000 0.00 0.00 0.00 2.43
147 148 1.698506 CCTCTCCCTCGTTGCTAGAT 58.301 55.000 0.00 0.00 0.00 1.98
148 149 1.339610 CCTCTCCCTCGTTGCTAGATG 59.660 57.143 0.00 0.00 0.00 2.90
149 150 2.302260 CTCTCCCTCGTTGCTAGATGA 58.698 52.381 0.00 0.00 0.00 2.92
150 151 2.025155 TCTCCCTCGTTGCTAGATGAC 58.975 52.381 0.00 0.00 0.00 3.06
151 152 2.028130 CTCCCTCGTTGCTAGATGACT 58.972 52.381 0.00 0.00 0.00 3.41
152 153 2.428890 CTCCCTCGTTGCTAGATGACTT 59.571 50.000 0.00 0.00 0.00 3.01
153 154 2.427453 TCCCTCGTTGCTAGATGACTTC 59.573 50.000 0.00 0.00 0.00 3.01
154 155 2.166459 CCCTCGTTGCTAGATGACTTCA 59.834 50.000 0.00 0.00 0.00 3.02
155 156 3.181471 CCCTCGTTGCTAGATGACTTCAT 60.181 47.826 0.00 0.00 39.70 2.57
156 157 4.038042 CCCTCGTTGCTAGATGACTTCATA 59.962 45.833 0.00 0.00 36.57 2.15
157 158 5.218885 CCTCGTTGCTAGATGACTTCATAG 58.781 45.833 0.00 0.00 36.57 2.23
158 159 5.009110 CCTCGTTGCTAGATGACTTCATAGA 59.991 44.000 0.00 0.00 36.57 1.98
159 160 6.294453 CCTCGTTGCTAGATGACTTCATAGAT 60.294 42.308 0.00 0.00 36.57 1.98
160 161 7.043961 TCGTTGCTAGATGACTTCATAGATT 57.956 36.000 0.00 0.00 36.57 2.40
161 162 6.920210 TCGTTGCTAGATGACTTCATAGATTG 59.080 38.462 0.00 0.00 36.57 2.67
162 163 6.920210 CGTTGCTAGATGACTTCATAGATTGA 59.080 38.462 0.00 0.00 36.57 2.57
163 164 7.598118 CGTTGCTAGATGACTTCATAGATTGAT 59.402 37.037 0.00 0.00 36.57 2.57
164 165 8.924691 GTTGCTAGATGACTTCATAGATTGATC 58.075 37.037 0.00 0.00 36.57 2.92
165 166 8.419922 TGCTAGATGACTTCATAGATTGATCT 57.580 34.615 0.00 0.00 40.86 2.75
166 167 8.868103 TGCTAGATGACTTCATAGATTGATCTT 58.132 33.333 0.00 0.00 38.32 2.40
167 168 9.142515 GCTAGATGACTTCATAGATTGATCTTG 57.857 37.037 0.00 0.00 38.32 3.02
170 171 9.713713 AGATGACTTCATAGATTGATCTTGATG 57.286 33.333 0.00 7.71 38.32 3.07
171 172 9.708092 GATGACTTCATAGATTGATCTTGATGA 57.292 33.333 16.48 11.19 38.32 2.92
173 174 9.490379 TGACTTCATAGATTGATCTTGATGATG 57.510 33.333 16.48 14.85 33.96 3.07
174 175 8.325421 ACTTCATAGATTGATCTTGATGATGC 57.675 34.615 13.87 0.00 33.96 3.91
175 176 6.963049 TCATAGATTGATCTTGATGATGCG 57.037 37.500 0.00 0.00 38.32 4.73
176 177 6.461640 TCATAGATTGATCTTGATGATGCGT 58.538 36.000 0.00 0.00 38.32 5.24
177 178 7.605449 TCATAGATTGATCTTGATGATGCGTA 58.395 34.615 0.00 0.00 38.32 4.42
178 179 7.758528 TCATAGATTGATCTTGATGATGCGTAG 59.241 37.037 0.00 0.00 38.32 3.51
179 180 6.094193 AGATTGATCTTGATGATGCGTAGA 57.906 37.500 0.00 0.00 35.14 2.59
180 181 6.519382 AGATTGATCTTGATGATGCGTAGAA 58.481 36.000 0.00 0.00 35.14 2.10
181 182 6.988580 AGATTGATCTTGATGATGCGTAGAAA 59.011 34.615 0.00 0.00 35.14 2.52
182 183 6.983474 TTGATCTTGATGATGCGTAGAAAA 57.017 33.333 0.00 0.00 35.14 2.29
183 184 7.558161 TTGATCTTGATGATGCGTAGAAAAT 57.442 32.000 0.00 0.00 35.14 1.82
184 185 7.558161 TGATCTTGATGATGCGTAGAAAATT 57.442 32.000 0.00 0.00 35.14 1.82
185 186 7.988737 TGATCTTGATGATGCGTAGAAAATTT 58.011 30.769 0.00 0.00 35.14 1.82
186 187 8.461222 TGATCTTGATGATGCGTAGAAAATTTT 58.539 29.630 2.28 2.28 35.14 1.82
187 188 9.935682 GATCTTGATGATGCGTAGAAAATTTTA 57.064 29.630 2.75 0.00 35.14 1.52
196 197 9.675553 GATGCGTAGAAAATTTTAAAATTCTGC 57.324 29.630 22.96 19.19 37.62 4.26
197 198 8.810652 TGCGTAGAAAATTTTAAAATTCTGCT 57.189 26.923 22.96 20.36 37.62 4.24
198 199 9.900710 TGCGTAGAAAATTTTAAAATTCTGCTA 57.099 25.926 22.96 19.59 37.62 3.49
206 207 8.528917 AATTTTAAAATTCTGCTACGTTTCCC 57.471 30.769 18.40 0.00 33.54 3.97
207 208 6.636562 TTTAAAATTCTGCTACGTTTCCCA 57.363 33.333 0.00 0.00 0.00 4.37
208 209 6.636562 TTAAAATTCTGCTACGTTTCCCAA 57.363 33.333 0.00 0.00 0.00 4.12
209 210 4.499037 AAATTCTGCTACGTTTCCCAAC 57.501 40.909 0.00 0.00 0.00 3.77
210 211 2.623878 TTCTGCTACGTTTCCCAACA 57.376 45.000 0.00 0.00 32.54 3.33
211 212 1.873698 TCTGCTACGTTTCCCAACAC 58.126 50.000 0.00 0.00 32.54 3.32
212 213 0.511221 CTGCTACGTTTCCCAACACG 59.489 55.000 0.00 0.00 42.29 4.49
214 215 0.509929 GCTACGTTTCCCAACACGTC 59.490 55.000 0.00 0.00 46.52 4.34
215 216 1.142474 CTACGTTTCCCAACACGTCC 58.858 55.000 0.00 0.00 46.52 4.79
216 217 0.463204 TACGTTTCCCAACACGTCCA 59.537 50.000 0.00 0.00 46.52 4.02
217 218 0.392729 ACGTTTCCCAACACGTCCAA 60.393 50.000 0.00 0.00 46.52 3.53
218 219 0.948678 CGTTTCCCAACACGTCCAAT 59.051 50.000 0.00 0.00 32.54 3.16
219 220 1.069500 CGTTTCCCAACACGTCCAATC 60.069 52.381 0.00 0.00 32.54 2.67
220 221 1.950909 GTTTCCCAACACGTCCAATCA 59.049 47.619 0.00 0.00 32.54 2.57
221 222 2.350057 TTCCCAACACGTCCAATCAA 57.650 45.000 0.00 0.00 0.00 2.57
222 223 1.890876 TCCCAACACGTCCAATCAAG 58.109 50.000 0.00 0.00 0.00 3.02
223 224 0.881118 CCCAACACGTCCAATCAAGG 59.119 55.000 0.00 0.00 0.00 3.61
224 225 1.544537 CCCAACACGTCCAATCAAGGA 60.545 52.381 0.00 0.00 34.64 3.36
225 226 2.436417 CCAACACGTCCAATCAAGGAT 58.564 47.619 0.00 0.00 40.42 3.24
226 227 2.420022 CCAACACGTCCAATCAAGGATC 59.580 50.000 0.00 0.00 40.42 3.36
227 228 3.073678 CAACACGTCCAATCAAGGATCA 58.926 45.455 0.00 0.00 40.42 2.92
228 229 2.699954 ACACGTCCAATCAAGGATCAC 58.300 47.619 0.00 0.00 40.42 3.06
236 237 4.881273 TCCAATCAAGGATCACCATAAACG 59.119 41.667 0.00 0.00 38.94 3.60
264 265 5.419155 AGATAGCTACAGTGCACTTCTACAA 59.581 40.000 18.94 2.13 34.99 2.41
269 270 3.939066 ACAGTGCACTTCTACAATACCC 58.061 45.455 18.94 0.00 0.00 3.69
276 277 2.764572 ACTTCTACAATACCCCGGTCTG 59.235 50.000 0.00 0.00 0.00 3.51
278 279 0.249322 CTACAATACCCCGGTCTGCG 60.249 60.000 0.00 0.00 0.00 5.18
285 286 2.509336 CCCGGTCTGCGTCACATC 60.509 66.667 0.00 0.00 0.00 3.06
286 287 2.261361 CCGGTCTGCGTCACATCA 59.739 61.111 0.00 0.00 0.00 3.07
287 288 2.094659 CCGGTCTGCGTCACATCAC 61.095 63.158 0.00 0.00 0.00 3.06
288 289 2.436539 CGGTCTGCGTCACATCACG 61.437 63.158 0.00 0.00 42.95 4.35
289 290 1.080772 GGTCTGCGTCACATCACGA 60.081 57.895 0.00 0.00 42.69 4.35
290 291 0.666274 GGTCTGCGTCACATCACGAA 60.666 55.000 0.00 0.00 42.69 3.85
291 292 0.435008 GTCTGCGTCACATCACGAAC 59.565 55.000 0.00 0.00 42.69 3.95
292 293 0.031449 TCTGCGTCACATCACGAACA 59.969 50.000 0.00 0.00 42.69 3.18
293 294 0.858583 CTGCGTCACATCACGAACAA 59.141 50.000 0.00 0.00 42.69 2.83
294 295 0.858583 TGCGTCACATCACGAACAAG 59.141 50.000 0.00 0.00 42.69 3.16
295 296 1.136690 GCGTCACATCACGAACAAGA 58.863 50.000 0.00 0.00 42.69 3.02
296 297 1.525197 GCGTCACATCACGAACAAGAA 59.475 47.619 0.00 0.00 42.69 2.52
297 298 2.033236 GCGTCACATCACGAACAAGAAA 60.033 45.455 0.00 0.00 42.69 2.52
298 299 3.545228 GCGTCACATCACGAACAAGAAAA 60.545 43.478 0.00 0.00 42.69 2.29
310 311 5.748152 ACGAACAAGAAAACATGAACAATGG 59.252 36.000 0.00 0.00 40.94 3.16
314 315 5.524646 ACAAGAAAACATGAACAATGGCTTG 59.475 36.000 0.00 0.00 40.94 4.01
330 331 3.211045 GGCTTGTTGGTACAGTTCTTGA 58.789 45.455 0.00 0.00 42.39 3.02
334 335 5.932303 GCTTGTTGGTACAGTTCTTGATCTA 59.068 40.000 0.00 0.00 42.39 1.98
335 336 6.091441 GCTTGTTGGTACAGTTCTTGATCTAG 59.909 42.308 0.00 0.00 42.39 2.43
336 337 6.037786 TGTTGGTACAGTTCTTGATCTAGG 57.962 41.667 4.29 0.00 42.39 3.02
343 344 4.593206 ACAGTTCTTGATCTAGGTTGTCCA 59.407 41.667 4.29 0.00 35.89 4.02
358 359 5.598005 AGGTTGTCCAATTTCAGATCAAACA 59.402 36.000 0.00 0.00 35.89 2.83
382 383 1.082366 GTGCCCGCAAGTTACAACG 60.082 57.895 0.00 0.00 0.00 4.10
401 402 3.368571 GACTGGCTGTGGGCAAGC 61.369 66.667 0.29 0.00 45.63 4.01
410 411 2.048603 GTGGGCAAGCCACCTGATC 61.049 63.158 13.87 0.00 37.98 2.92
412 413 2.440980 GGCAAGCCACCTGATCCC 60.441 66.667 6.14 0.00 35.81 3.85
417 418 1.051812 AAGCCACCTGATCCCTATCG 58.948 55.000 0.00 0.00 34.60 2.92
426 427 1.133482 TGATCCCTATCGGCACAGAGA 60.133 52.381 0.00 0.00 34.60 3.10
432 433 2.402305 CTATCGGCACAGAGATCAAGC 58.598 52.381 0.00 0.00 0.00 4.01
436 437 1.093159 GGCACAGAGATCAAGCCAAG 58.907 55.000 0.00 0.00 44.59 3.61
439 440 2.775890 CACAGAGATCAAGCCAAGTGT 58.224 47.619 0.00 0.00 0.00 3.55
443 444 1.728971 GAGATCAAGCCAAGTGTCACG 59.271 52.381 0.00 0.00 0.00 4.35
447 448 0.882042 CAAGCCAAGTGTCACGAGCT 60.882 55.000 10.50 10.50 0.00 4.09
456 457 0.391130 TGTCACGAGCTGGGCAATAC 60.391 55.000 0.00 0.00 0.00 1.89
464 465 3.242870 CGAGCTGGGCAATACAAATCTTC 60.243 47.826 0.00 0.00 0.00 2.87
486 487 9.677567 TCTTCTTTTAATACTTGCATGTGTTTC 57.322 29.630 17.66 0.00 0.00 2.78
515 516 8.887393 TCTTTATTTGACCTAAAGTTACTCCCT 58.113 33.333 0.00 0.00 37.43 4.20
525 526 9.810870 ACCTAAAGTTACTCCCTACTATGATAG 57.189 37.037 0.00 0.00 0.00 2.08
534 535 5.273208 TCCCTACTATGATAGCCTTCCATC 58.727 45.833 0.00 0.00 0.00 3.51
535 536 5.026121 CCCTACTATGATAGCCTTCCATCA 58.974 45.833 0.00 0.00 35.72 3.07
537 538 6.407865 CCCTACTATGATAGCCTTCCATCATG 60.408 46.154 0.00 0.00 41.02 3.07
540 541 3.777106 TGATAGCCTTCCATCATGACC 57.223 47.619 0.00 0.00 0.00 4.02
541 542 2.037641 TGATAGCCTTCCATCATGACCG 59.962 50.000 0.00 0.00 0.00 4.79
566 567 4.334203 CCTTATGGCTTGTAAACATACGCA 59.666 41.667 0.00 0.00 0.00 5.24
574 575 5.856455 GCTTGTAAACATACGCAAATGACTT 59.144 36.000 2.46 0.00 0.00 3.01
611 2794 8.651389 AGTGTACACCAATGACTTAGCATATAT 58.349 33.333 22.28 0.00 0.00 0.86
612 2795 8.712363 GTGTACACCAATGACTTAGCATATATG 58.288 37.037 15.42 8.45 0.00 1.78
615 2798 8.383318 ACACCAATGACTTAGCATATATGTTC 57.617 34.615 14.14 0.00 0.00 3.18
641 2824 4.406943 CCGAAAGTAGCAAAAGATGAAGC 58.593 43.478 0.00 0.00 0.00 3.86
661 2844 6.826741 TGAAGCTAAATACATTACTTCCACCC 59.173 38.462 0.00 0.00 34.37 4.61
674 2857 9.003658 CATTACTTCCACCCATATAAGAATCAC 57.996 37.037 0.00 0.00 0.00 3.06
696 2879 6.988580 TCACAGCAGATAATCTTGTCCATAAG 59.011 38.462 0.00 0.00 0.00 1.73
724 2907 4.979197 TGTAAATGCACGTCCAAAAACATC 59.021 37.500 0.00 0.00 0.00 3.06
728 2911 3.182967 TGCACGTCCAAAAACATCAAAC 58.817 40.909 0.00 0.00 0.00 2.93
753 2937 8.203485 ACAAATCCCGAATAATAAATGTTGCAT 58.797 29.630 0.00 0.00 0.00 3.96
871 3062 2.561037 CCAAAATATCCCCGCCCGC 61.561 63.158 0.00 0.00 0.00 6.13
980 3171 2.300437 GCGCCTATATCTATCCCCATCC 59.700 54.545 0.00 0.00 0.00 3.51
1448 3665 2.667969 TGTTTCTCTGACGAATCATGCG 59.332 45.455 0.00 0.00 33.22 4.73
1457 3674 3.802139 TGACGAATCATGCGGAGATTTAC 59.198 43.478 0.00 1.40 35.93 2.01
1467 3685 4.448210 TGCGGAGATTTACCAGTATTTCC 58.552 43.478 0.00 0.00 0.00 3.13
1501 3719 4.364860 GTGAAACCGTTTTAAACTGCCAT 58.635 39.130 6.27 0.00 0.00 4.40
1682 3908 0.974383 AAGTAAGTCCCCACTCACCG 59.026 55.000 0.00 0.00 29.93 4.94
1732 3967 5.239963 TCGTTACAGTACAGTGTTCTGATGA 59.760 40.000 29.86 18.58 43.76 2.92
1736 3971 1.656095 GTACAGTGTTCTGATGAGCGC 59.344 52.381 0.00 0.00 43.76 5.92
1770 4005 3.120165 GGTTCTTCAAGGAATCAAGCGAC 60.120 47.826 0.00 0.00 0.00 5.19
1795 4030 3.692406 GGGGACACGCCGAGAAGT 61.692 66.667 0.00 0.00 37.63 3.01
1797 4032 1.588082 GGGACACGCCGAGAAGTTA 59.412 57.895 0.00 0.00 37.63 2.24
1854 4089 3.439857 TTGCTAGCTTTGATTGGTCCT 57.560 42.857 17.23 0.00 0.00 3.85
1856 4091 2.019984 GCTAGCTTTGATTGGTCCTGG 58.980 52.381 7.70 0.00 0.00 4.45
1897 4132 7.547722 TGTTATATACTCATGCTTCGTGTGTTT 59.452 33.333 0.00 0.00 31.12 2.83
1898 4133 9.027129 GTTATATACTCATGCTTCGTGTGTTTA 57.973 33.333 0.00 0.00 31.12 2.01
1961 4196 4.023193 CAGTCAATTGTCACACCCTTAACC 60.023 45.833 5.13 0.00 0.00 2.85
1974 4209 2.268298 CCTTAACCGAGTTCGACCATG 58.732 52.381 2.59 0.00 43.02 3.66
2006 4241 3.541632 CGATGCCCTGTATGGTAAGTTT 58.458 45.455 0.00 0.00 0.00 2.66
2014 4250 5.648092 CCCTGTATGGTAAGTTTCTTCCTTG 59.352 44.000 0.00 0.00 0.00 3.61
2017 4253 7.549488 CCTGTATGGTAAGTTTCTTCCTTGTAG 59.451 40.741 0.00 0.00 0.00 2.74
2019 4255 8.822805 TGTATGGTAAGTTTCTTCCTTGTAGAT 58.177 33.333 0.00 0.00 0.00 1.98
2054 4290 6.086222 CGTCTTTGCATTTTATTACAGTGCT 58.914 36.000 0.00 0.00 36.78 4.40
2057 4293 8.764287 GTCTTTGCATTTTATTACAGTGCTTTT 58.236 29.630 0.00 0.00 36.78 2.27
2146 4382 3.709653 ACTTGAGTTGTCTGGAGTGGTTA 59.290 43.478 0.00 0.00 0.00 2.85
2171 4408 1.421268 TGTTGCCAGATCAGGAACACT 59.579 47.619 15.66 0.00 0.00 3.55
2190 4427 7.117667 GGAACACTGACAAAAACTCAAATGTTT 59.882 33.333 0.00 0.00 41.32 2.83
2225 4462 5.546499 TCAGTAAACCTTAGGGTGAATCTGT 59.454 40.000 2.32 0.00 46.67 3.41
2253 4490 8.623903 TGTATGAGTTAGGATTTGCATCATTTC 58.376 33.333 0.00 0.00 0.00 2.17
2278 4515 8.231709 TCTTTTAGGGGAGGATAAATTAATGGG 58.768 37.037 0.00 0.00 0.00 4.00
2437 4688 6.661304 AAACTGCATGAAGAGGAAGAAAAT 57.339 33.333 8.02 0.00 0.00 1.82
2444 4695 7.439056 TGCATGAAGAGGAAGAAAATTCAAAAC 59.561 33.333 0.00 0.00 33.91 2.43
2449 4700 9.965824 GAAGAGGAAGAAAATTCAAAACATGTA 57.034 29.630 0.00 0.00 0.00 2.29
2471 4722 6.529125 TGTATCGTAACACAAAGTAGCTAAGC 59.471 38.462 0.00 0.00 0.00 3.09
2478 4729 6.451064 ACACAAAGTAGCTAAGCTTTTTGT 57.549 33.333 16.84 16.84 46.07 2.83
2482 4733 9.118236 CACAAAGTAGCTAAGCTTTTTGTAATC 57.882 33.333 19.13 0.28 44.81 1.75
2528 4802 6.257849 TGACTCGATACATAAGTTTTGATGGC 59.742 38.462 0.00 0.00 0.00 4.40
2551 4827 6.253512 GGCTATATTTGTTAGCAAAGCAACAC 59.746 38.462 10.59 0.00 46.30 3.32
2552 4828 6.253512 GCTATATTTGTTAGCAAAGCAACACC 59.746 38.462 10.59 0.00 46.30 4.16
2553 4829 4.670896 ATTTGTTAGCAAAGCAACACCT 57.329 36.364 10.59 0.00 46.30 4.00
2554 4830 3.435105 TTGTTAGCAAAGCAACACCTG 57.565 42.857 0.00 0.00 32.63 4.00
2555 4831 2.649190 TGTTAGCAAAGCAACACCTGA 58.351 42.857 0.00 0.00 29.82 3.86
2556 4832 2.357637 TGTTAGCAAAGCAACACCTGAC 59.642 45.455 0.00 0.00 29.82 3.51
2592 4868 2.724977 TAACTTGTGCCTCTCTCGTG 57.275 50.000 0.00 0.00 0.00 4.35
2695 4971 3.118592 GCTCTTCCATGCCTACTTACAGT 60.119 47.826 0.00 0.00 0.00 3.55
2696 4972 4.688021 CTCTTCCATGCCTACTTACAGTC 58.312 47.826 0.00 0.00 0.00 3.51
2720 5000 7.927629 GTCAAATTATTGTGGGATATGCAATGT 59.072 33.333 0.00 0.00 37.79 2.71
2752 5033 5.826737 CAGAATCTAAAATGAGGTGCTCCAT 59.173 40.000 7.70 0.00 35.89 3.41
2835 5116 2.838202 CCTTCAGGAGCAGGTAAACCTA 59.162 50.000 0.25 0.00 40.46 3.08
2836 5117 3.369576 CCTTCAGGAGCAGGTAAACCTAC 60.370 52.174 0.25 0.00 40.46 3.18
2837 5118 3.185880 TCAGGAGCAGGTAAACCTACT 57.814 47.619 1.31 1.31 46.65 2.57
2849 5130 5.593502 AGGTAAACCTACTTCCATACTCTCG 59.406 44.000 0.00 0.00 46.48 4.04
2854 5135 4.079558 ACCTACTTCCATACTCTCGGGTTA 60.080 45.833 0.00 0.00 0.00 2.85
2865 5146 5.733620 ACTCTCGGGTTAAATACAGAACA 57.266 39.130 0.00 0.00 0.00 3.18
3025 5306 0.824759 AGGCCACGGTCAGTATCTTC 59.175 55.000 5.01 0.00 0.00 2.87
3043 5324 1.002990 CCTGGACACTGCTGCATCA 60.003 57.895 1.31 0.00 0.00 3.07
3064 5346 5.789521 TCAATTCTATCGTCTGTGTTTCCA 58.210 37.500 0.00 0.00 0.00 3.53
3112 5394 0.946221 CAGGAGTGTGGCACTTCGAC 60.946 60.000 19.83 8.48 45.44 4.20
3143 5425 0.837691 TGAGGAGGCAGCTTGAAGGA 60.838 55.000 0.00 0.00 0.00 3.36
3144 5426 0.392327 GAGGAGGCAGCTTGAAGGAC 60.392 60.000 0.00 0.00 0.00 3.85
3145 5427 1.130054 AGGAGGCAGCTTGAAGGACA 61.130 55.000 0.00 0.00 0.00 4.02
3146 5428 0.957888 GGAGGCAGCTTGAAGGACAC 60.958 60.000 0.00 0.00 0.00 3.67
3147 5429 1.294659 GAGGCAGCTTGAAGGACACG 61.295 60.000 0.00 0.00 0.00 4.49
3148 5430 2.328099 GGCAGCTTGAAGGACACGG 61.328 63.158 0.00 0.00 0.00 4.94
3268 5550 1.389555 GGTTTGTAGGGTGCTATGCC 58.610 55.000 0.00 0.00 0.00 4.40
3354 5645 8.672815 GTCTTCTGCTCTAATCTTGCTAAATTT 58.327 33.333 0.00 0.00 0.00 1.82
3355 5646 9.890629 TCTTCTGCTCTAATCTTGCTAAATTTA 57.109 29.630 0.00 0.00 0.00 1.40
3358 5649 8.562892 TCTGCTCTAATCTTGCTAAATTTATGC 58.437 33.333 0.00 5.67 0.00 3.14
3359 5650 8.224389 TGCTCTAATCTTGCTAAATTTATGCA 57.776 30.769 14.44 14.44 34.69 3.96
3360 5651 8.853126 TGCTCTAATCTTGCTAAATTTATGCAT 58.147 29.630 17.36 3.79 36.55 3.96
3389 5680 3.515502 ACATCTTGCAGCCTGTCTACTTA 59.484 43.478 0.00 0.00 0.00 2.24
3391 5682 4.826274 TCTTGCAGCCTGTCTACTTATT 57.174 40.909 0.00 0.00 0.00 1.40
3392 5683 5.165961 TCTTGCAGCCTGTCTACTTATTT 57.834 39.130 0.00 0.00 0.00 1.40
3393 5684 5.560724 TCTTGCAGCCTGTCTACTTATTTT 58.439 37.500 0.00 0.00 0.00 1.82
3394 5685 6.707290 TCTTGCAGCCTGTCTACTTATTTTA 58.293 36.000 0.00 0.00 0.00 1.52
3395 5686 6.594159 TCTTGCAGCCTGTCTACTTATTTTAC 59.406 38.462 0.00 0.00 0.00 2.01
3444 6108 2.032426 CCCGGTTGCAACGAAATATACC 59.968 50.000 22.67 5.92 0.00 2.73
3445 6109 2.032426 CCGGTTGCAACGAAATATACCC 59.968 50.000 22.67 4.48 0.00 3.69
3446 6110 2.940410 CGGTTGCAACGAAATATACCCT 59.060 45.455 22.67 0.00 0.00 4.34
3447 6111 3.001939 CGGTTGCAACGAAATATACCCTC 59.998 47.826 22.67 3.74 0.00 4.30
3448 6112 3.314357 GGTTGCAACGAAATATACCCTCC 59.686 47.826 22.67 0.27 0.00 4.30
3450 6114 4.223556 TGCAACGAAATATACCCTCCAA 57.776 40.909 0.00 0.00 0.00 3.53
3451 6115 4.590918 TGCAACGAAATATACCCTCCAAA 58.409 39.130 0.00 0.00 0.00 3.28
3452 6116 5.197451 TGCAACGAAATATACCCTCCAAAT 58.803 37.500 0.00 0.00 0.00 2.32
3453 6117 5.654650 TGCAACGAAATATACCCTCCAAATT 59.345 36.000 0.00 0.00 0.00 1.82
3455 6119 7.039270 GCAACGAAATATACCCTCCAAATTTT 58.961 34.615 0.00 0.00 0.00 1.82
3456 6120 7.010091 GCAACGAAATATACCCTCCAAATTTTG 59.990 37.037 1.99 1.99 0.00 2.44
3487 6151 0.897863 TAAAAATGCAGGGCACGGCT 60.898 50.000 13.50 0.00 43.04 5.52
3495 6159 0.671251 CAGGGCACGGCTGTTTTTAA 59.329 50.000 0.00 0.00 0.00 1.52
3496 6160 0.671796 AGGGCACGGCTGTTTTTAAC 59.328 50.000 0.00 0.00 0.00 2.01
3509 6173 1.584175 TTTTAACGCACGAGAAGGCA 58.416 45.000 0.00 0.00 0.00 4.75
3510 6174 1.584175 TTTAACGCACGAGAAGGCAA 58.416 45.000 0.00 0.00 0.00 4.52
3592 6257 3.217017 CGGAGGCTGCCGCTACTA 61.217 66.667 21.68 0.00 45.38 1.82
3593 6258 2.417936 GGAGGCTGCCGCTACTAC 59.582 66.667 21.68 1.03 36.09 2.73
3595 6260 1.360911 GAGGCTGCCGCTACTACTC 59.639 63.158 15.58 0.00 36.09 2.59
3596 6261 1.076632 AGGCTGCCGCTACTACTCT 60.077 57.895 13.96 0.00 36.09 3.24
3597 6262 1.104577 AGGCTGCCGCTACTACTCTC 61.105 60.000 13.96 0.00 36.09 3.20
3608 6281 1.235281 ACTACTCTCAGCGACGCACA 61.235 55.000 23.70 6.58 0.00 4.57
3618 6291 2.713154 GACGCACAAACCGTTGCT 59.287 55.556 0.00 0.00 39.30 3.91
3628 6301 3.694566 ACAAACCGTTGCTCTTTTCTTCT 59.305 39.130 0.00 0.00 38.39 2.85
3631 6304 1.136224 CCGTTGCTCTTTTCTTCTCGC 60.136 52.381 0.00 0.00 0.00 5.03
3636 6309 0.784778 CTCTTTTCTTCTCGCGCGTT 59.215 50.000 30.98 0.00 0.00 4.84
3638 6311 0.506932 CTTTTCTTCTCGCGCGTTGA 59.493 50.000 30.98 24.67 0.00 3.18
3640 6313 1.554042 TTTCTTCTCGCGCGTTGACC 61.554 55.000 30.98 0.00 0.00 4.02
3678 6367 3.415087 ACCATGGCCAGCTCCTCC 61.415 66.667 13.05 0.00 0.00 4.30
3689 6378 2.787567 GCTCCTCCGACCCTGTAGC 61.788 68.421 0.00 0.00 0.00 3.58
3700 6389 1.452651 CCTGTAGCCGACCCTACGA 60.453 63.158 0.00 0.00 40.40 3.43
3706 6395 1.079336 GCCGACCCTACGAAAGCTT 60.079 57.895 0.00 0.00 35.09 3.74
3760 6449 2.087646 GCCTCCAATGTCACTCCTTTC 58.912 52.381 0.00 0.00 0.00 2.62
3763 6452 3.056107 CCTCCAATGTCACTCCTTTCGTA 60.056 47.826 0.00 0.00 0.00 3.43
3811 6500 2.202676 CGCAGTCGCTCCTTCCTC 60.203 66.667 0.00 0.00 35.30 3.71
3814 6503 1.515020 CAGTCGCTCCTTCCTCTGG 59.485 63.158 0.00 0.00 0.00 3.86
3818 6507 1.153469 CGCTCCTTCCTCTGGCTTC 60.153 63.158 0.00 0.00 0.00 3.86
3820 6509 1.271127 GCTCCTTCCTCTGGCTTCCT 61.271 60.000 0.00 0.00 0.00 3.36
3821 6510 0.829990 CTCCTTCCTCTGGCTTCCTC 59.170 60.000 0.00 0.00 0.00 3.71
3822 6511 0.618968 TCCTTCCTCTGGCTTCCTCC 60.619 60.000 0.00 0.00 0.00 4.30
3823 6512 1.519719 CTTCCTCTGGCTTCCTCCG 59.480 63.158 0.00 0.00 0.00 4.63
3824 6513 2.585791 CTTCCTCTGGCTTCCTCCGC 62.586 65.000 0.00 0.00 0.00 5.54
3832 6521 4.479993 CTTCCTCCGCCTGGCTGG 62.480 72.222 17.92 18.71 39.35 4.85
3836 6525 4.559063 CTCCGCCTGGCTGGGATG 62.559 72.222 23.03 11.58 36.00 3.51
3841 6530 4.124943 CCTGGCTGGGATGCAGCT 62.125 66.667 0.22 0.00 44.51 4.24
3842 6531 2.829003 CTGGCTGGGATGCAGCTG 60.829 66.667 10.11 10.11 44.51 4.24
3846 6535 4.124943 CTGGGATGCAGCTGCCCT 62.125 66.667 34.64 22.52 42.52 5.19
3847 6536 3.657038 CTGGGATGCAGCTGCCCTT 62.657 63.158 34.64 20.03 42.52 3.95
3848 6537 3.145551 GGGATGCAGCTGCCCTTG 61.146 66.667 34.64 0.00 41.18 3.61
3849 6538 3.834799 GGATGCAGCTGCCCTTGC 61.835 66.667 34.64 20.68 41.18 4.01
3850 6539 3.834799 GATGCAGCTGCCCTTGCC 61.835 66.667 34.64 13.75 41.18 4.52
3866 6555 4.821589 CCCGCAGTCGCTCCTTCC 62.822 72.222 0.00 0.00 35.30 3.46
3867 6556 3.764466 CCGCAGTCGCTCCTTCCT 61.764 66.667 0.00 0.00 35.30 3.36
3868 6557 2.202676 CGCAGTCGCTCCTTCCTC 60.203 66.667 0.00 0.00 35.30 3.71
3869 6558 2.705821 CGCAGTCGCTCCTTCCTCT 61.706 63.158 0.00 0.00 35.30 3.69
3870 6559 1.153667 GCAGTCGCTCCTTCCTCTG 60.154 63.158 0.00 0.00 34.30 3.35
3871 6560 1.515020 CAGTCGCTCCTTCCTCTGG 59.485 63.158 0.00 0.00 0.00 3.86
3872 6561 2.185608 GTCGCTCCTTCCTCTGGC 59.814 66.667 0.00 0.00 0.00 4.85
3873 6562 2.038007 TCGCTCCTTCCTCTGGCT 59.962 61.111 0.00 0.00 0.00 4.75
3882 6571 0.911525 TTCCTCTGGCTTCCTCCTGG 60.912 60.000 0.00 0.00 0.00 4.45
3891 6580 0.693767 CTTCCTCCTGGCTGGGATCT 60.694 60.000 10.79 0.00 34.56 2.75
3900 6589 2.464459 GCTGGGATCTTTGCGTCGG 61.464 63.158 0.00 0.00 0.00 4.79
3904 6593 0.105039 GGGATCTTTGCGTCGGATCT 59.895 55.000 8.48 0.00 36.88 2.75
3906 6595 1.471676 GGATCTTTGCGTCGGATCTGT 60.472 52.381 0.42 0.00 36.88 3.41
3909 6598 1.272490 TCTTTGCGTCGGATCTGTTCT 59.728 47.619 0.42 0.00 0.00 3.01
3910 6599 1.391485 CTTTGCGTCGGATCTGTTCTG 59.609 52.381 0.42 0.00 0.00 3.02
3911 6600 0.601057 TTGCGTCGGATCTGTTCTGA 59.399 50.000 0.42 0.00 37.40 3.27
3916 6605 1.095600 TCGGATCTGTTCTGACTCGG 58.904 55.000 0.42 0.00 34.70 4.63
3917 6606 1.095600 CGGATCTGTTCTGACTCGGA 58.904 55.000 0.00 0.00 31.81 4.55
3918 6607 1.064803 CGGATCTGTTCTGACTCGGAG 59.935 57.143 2.83 2.83 31.81 4.63
3919 6608 2.370349 GGATCTGTTCTGACTCGGAGA 58.630 52.381 12.86 0.00 0.00 3.71
3920 6609 2.755655 GGATCTGTTCTGACTCGGAGAA 59.244 50.000 12.86 0.00 34.09 2.87
3925 6614 3.165875 TGTTCTGACTCGGAGAAATCCT 58.834 45.455 12.86 0.00 34.09 3.24
3927 6616 2.808919 TCTGACTCGGAGAAATCCTGT 58.191 47.619 12.86 0.00 34.09 4.00
3928 6617 2.493675 TCTGACTCGGAGAAATCCTGTG 59.506 50.000 12.86 0.00 34.09 3.66
3929 6618 2.493675 CTGACTCGGAGAAATCCTGTGA 59.506 50.000 12.86 0.00 34.09 3.58
3930 6619 2.897326 TGACTCGGAGAAATCCTGTGAA 59.103 45.455 12.86 0.00 34.09 3.18
3931 6620 3.056536 TGACTCGGAGAAATCCTGTGAAG 60.057 47.826 12.86 0.00 34.09 3.02
3932 6621 3.165875 ACTCGGAGAAATCCTGTGAAGA 58.834 45.455 12.86 0.00 34.09 2.87
3933 6622 3.772025 ACTCGGAGAAATCCTGTGAAGAT 59.228 43.478 12.86 0.00 34.09 2.40
3934 6623 4.118410 CTCGGAGAAATCCTGTGAAGATG 58.882 47.826 0.00 0.00 34.09 2.90
3936 6625 3.868077 CGGAGAAATCCTGTGAAGATGTC 59.132 47.826 0.00 0.00 0.00 3.06
3937 6626 3.868077 GGAGAAATCCTGTGAAGATGTCG 59.132 47.826 0.00 0.00 33.82 4.35
3938 6627 4.499183 GAGAAATCCTGTGAAGATGTCGT 58.501 43.478 0.00 0.00 33.82 4.34
3939 6628 4.248859 AGAAATCCTGTGAAGATGTCGTG 58.751 43.478 0.00 0.00 33.82 4.35
3940 6629 2.680312 ATCCTGTGAAGATGTCGTGG 57.320 50.000 0.00 0.00 0.00 4.94
3944 6633 0.392706 TGTGAAGATGTCGTGGTGCT 59.607 50.000 0.00 0.00 0.00 4.40
3945 6634 1.202639 TGTGAAGATGTCGTGGTGCTT 60.203 47.619 0.00 0.00 0.00 3.91
3946 6635 1.195448 GTGAAGATGTCGTGGTGCTTG 59.805 52.381 0.00 0.00 0.00 4.01
3947 6636 0.166814 GAAGATGTCGTGGTGCTTGC 59.833 55.000 0.00 0.00 0.00 4.01
3948 6637 0.534877 AAGATGTCGTGGTGCTTGCA 60.535 50.000 0.00 0.00 0.00 4.08
3958 7214 0.597377 GGTGCTTGCAAAGGTTTCGG 60.597 55.000 0.00 0.00 46.35 4.30
3980 7236 1.673920 TGAAAACCTTTGTCCGTCTGC 59.326 47.619 0.00 0.00 0.00 4.26
3981 7237 1.947456 GAAAACCTTTGTCCGTCTGCT 59.053 47.619 0.00 0.00 0.00 4.24
3986 7242 0.241213 CTTTGTCCGTCTGCTCTCGA 59.759 55.000 0.00 0.00 0.00 4.04
3992 7248 1.578206 CCGTCTGCTCTCGACAGTGA 61.578 60.000 0.00 0.00 36.50 3.41
3996 7252 0.453615 CTGCTCTCGACAGTGACGAC 60.454 60.000 13.59 5.49 35.88 4.34
3997 7253 1.154188 GCTCTCGACAGTGACGACC 60.154 63.158 13.59 2.30 35.88 4.79
3998 7254 1.853114 GCTCTCGACAGTGACGACCA 61.853 60.000 13.59 3.07 35.88 4.02
4005 7261 0.736325 ACAGTGACGACCATTAGCGC 60.736 55.000 0.00 0.00 0.00 5.92
4016 7272 1.429463 CATTAGCGCCGTTATCCCTC 58.571 55.000 2.29 0.00 0.00 4.30
4020 7276 3.534056 CGCCGTTATCCCTCCCGT 61.534 66.667 0.00 0.00 0.00 5.28
4022 7278 2.819550 CCGTTATCCCTCCCGTGG 59.180 66.667 0.00 0.00 0.00 4.94
4041 7297 3.496884 GTGGATGTTGTCGTGAAGCTTAA 59.503 43.478 0.00 0.00 0.00 1.85
4042 7298 4.154195 GTGGATGTTGTCGTGAAGCTTAAT 59.846 41.667 0.00 0.00 0.00 1.40
4057 7313 4.805219 AGCTTAATTGTTTTAGGGCGTTG 58.195 39.130 0.00 0.00 0.00 4.10
4064 7320 1.671845 GTTTTAGGGCGTTGTGTGACA 59.328 47.619 0.00 0.00 0.00 3.58
4074 7330 3.362986 GCGTTGTGTGACATTGTACTCAG 60.363 47.826 0.00 0.00 0.00 3.35
4077 7333 5.861787 CGTTGTGTGACATTGTACTCAGATA 59.138 40.000 0.00 0.00 0.00 1.98
4107 7363 9.425577 CTATGCTTTATTTTAGTAGCCTAGTCC 57.574 37.037 0.00 0.00 31.41 3.85
4109 7365 8.543293 TGCTTTATTTTAGTAGCCTAGTCCTA 57.457 34.615 0.00 0.00 32.73 2.94
4123 7379 4.097135 CCTAGTCCTATCCTGCATGATACG 59.903 50.000 7.53 4.97 0.00 3.06
4124 7380 2.828520 AGTCCTATCCTGCATGATACGG 59.171 50.000 7.53 12.21 0.00 4.02
4125 7381 2.093973 GTCCTATCCTGCATGATACGGG 60.094 54.545 18.36 14.49 34.63 5.28
4130 7386 1.961394 TCCTGCATGATACGGGTAGTC 59.039 52.381 0.00 0.00 34.93 2.59
4133 7389 3.572682 CCTGCATGATACGGGTAGTCTAA 59.427 47.826 0.00 0.00 0.00 2.10
4139 7395 4.965814 TGATACGGGTAGTCTAAGATCGT 58.034 43.478 0.00 0.00 0.00 3.73
4144 7400 4.036498 ACGGGTAGTCTAAGATCGTCATTG 59.964 45.833 0.00 0.00 0.00 2.82
4153 7409 6.580791 GTCTAAGATCGTCATTGTATGAGAGC 59.419 42.308 0.00 0.00 40.53 4.09
4159 7415 3.643763 GTCATTGTATGAGAGCTACCCG 58.356 50.000 0.00 0.00 40.53 5.28
4161 7417 4.277672 GTCATTGTATGAGAGCTACCCGTA 59.722 45.833 0.00 0.00 40.53 4.02
4169 7425 4.081406 TGAGAGCTACCCGTAACTTTGTA 58.919 43.478 0.00 0.00 0.00 2.41
4172 7428 4.708421 AGAGCTACCCGTAACTTTGTATCA 59.292 41.667 0.00 0.00 0.00 2.15
4177 7433 4.824289 ACCCGTAACTTTGTATCATTCGT 58.176 39.130 0.00 0.00 0.00 3.85
4180 7436 4.865925 CCGTAACTTTGTATCATTCGTCCA 59.134 41.667 0.00 0.00 0.00 4.02
4187 7443 7.047891 ACTTTGTATCATTCGTCCATGTACAT 58.952 34.615 1.41 1.41 0.00 2.29
4188 7444 6.843069 TTGTATCATTCGTCCATGTACATG 57.157 37.500 26.02 26.02 38.51 3.21
4196 7452 5.699097 TCGTCCATGTACATGATTCGATA 57.301 39.130 32.72 16.73 41.20 2.92
4262 7519 8.757982 ATATAAAGCAGGATGACATCTTGTTT 57.242 30.769 23.80 21.65 40.49 2.83
4266 7523 5.809001 AGCAGGATGACATCTTGTTTCTAA 58.191 37.500 23.80 0.00 39.69 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 4.125695 ACCTAGCGCCGAACGGAC 62.126 66.667 17.63 7.92 43.93 4.79
16 17 3.818787 GACCTAGCGCCGAACGGA 61.819 66.667 17.63 0.00 43.93 4.69
17 18 3.426117 ATGACCTAGCGCCGAACGG 62.426 63.158 2.29 9.00 43.93 4.44
19 20 1.944676 CGATGACCTAGCGCCGAAC 60.945 63.158 2.29 0.00 0.00 3.95
20 21 2.411701 CGATGACCTAGCGCCGAA 59.588 61.111 2.29 0.00 0.00 4.30
21 22 3.592814 CCGATGACCTAGCGCCGA 61.593 66.667 2.29 0.00 36.74 5.54
22 23 3.900892 ACCGATGACCTAGCGCCG 61.901 66.667 2.29 0.00 36.74 6.46
23 24 2.088674 ATCACCGATGACCTAGCGCC 62.089 60.000 2.29 0.00 37.79 6.53
24 25 0.249489 AATCACCGATGACCTAGCGC 60.249 55.000 0.00 0.00 37.79 5.92
25 26 1.860950 CAAATCACCGATGACCTAGCG 59.139 52.381 0.00 0.00 37.79 4.26
26 27 2.158957 TCCAAATCACCGATGACCTAGC 60.159 50.000 0.00 0.00 37.79 3.42
27 28 3.819564 TCCAAATCACCGATGACCTAG 57.180 47.619 0.00 0.00 37.79 3.02
28 29 3.709141 TGATCCAAATCACCGATGACCTA 59.291 43.478 0.00 0.00 37.79 3.08
29 30 2.505407 TGATCCAAATCACCGATGACCT 59.495 45.455 0.00 0.00 37.79 3.85
30 31 2.917933 TGATCCAAATCACCGATGACC 58.082 47.619 0.00 0.00 37.79 4.02
39 40 0.249120 ACTCGCCGTGATCCAAATCA 59.751 50.000 0.00 0.00 39.63 2.57
40 41 1.859080 GTACTCGCCGTGATCCAAATC 59.141 52.381 0.00 0.00 0.00 2.17
41 42 1.801395 CGTACTCGCCGTGATCCAAAT 60.801 52.381 0.00 0.00 0.00 2.32
42 43 0.457166 CGTACTCGCCGTGATCCAAA 60.457 55.000 0.00 0.00 0.00 3.28
43 44 1.138036 CGTACTCGCCGTGATCCAA 59.862 57.895 0.00 0.00 0.00 3.53
44 45 1.746239 TCGTACTCGCCGTGATCCA 60.746 57.895 0.00 0.00 36.96 3.41
45 46 1.298190 GTCGTACTCGCCGTGATCC 60.298 63.158 0.00 0.00 36.96 3.36
46 47 0.316032 GAGTCGTACTCGCCGTGATC 60.316 60.000 0.00 0.00 35.28 2.92
47 48 1.712977 GGAGTCGTACTCGCCGTGAT 61.713 60.000 8.33 0.00 45.96 3.06
48 49 2.393768 GGAGTCGTACTCGCCGTGA 61.394 63.158 8.33 0.00 45.96 4.35
49 50 1.989966 ATGGAGTCGTACTCGCCGTG 61.990 60.000 8.33 0.00 45.96 4.94
50 51 1.712977 GATGGAGTCGTACTCGCCGT 61.713 60.000 8.33 3.07 45.96 5.68
51 52 1.009900 GATGGAGTCGTACTCGCCG 60.010 63.158 8.33 0.00 45.96 6.46
52 53 0.454600 TTGATGGAGTCGTACTCGCC 59.545 55.000 8.33 0.00 45.96 5.54
53 54 1.546834 GTTGATGGAGTCGTACTCGC 58.453 55.000 8.33 3.96 45.96 5.03
54 55 1.202268 GGGTTGATGGAGTCGTACTCG 60.202 57.143 8.33 0.00 45.96 4.18
55 56 1.136500 GGGGTTGATGGAGTCGTACTC 59.864 57.143 6.50 6.50 44.32 2.59
56 57 1.192428 GGGGTTGATGGAGTCGTACT 58.808 55.000 0.00 0.00 0.00 2.73
57 58 0.179119 CGGGGTTGATGGAGTCGTAC 60.179 60.000 0.00 0.00 0.00 3.67
58 59 0.612732 ACGGGGTTGATGGAGTCGTA 60.613 55.000 0.00 0.00 0.00 3.43
59 60 1.477685 AACGGGGTTGATGGAGTCGT 61.478 55.000 0.00 0.00 0.00 4.34
60 61 0.739813 GAACGGGGTTGATGGAGTCG 60.740 60.000 0.00 0.00 0.00 4.18
61 62 0.613777 AGAACGGGGTTGATGGAGTC 59.386 55.000 0.00 0.00 0.00 3.36
62 63 0.613777 GAGAACGGGGTTGATGGAGT 59.386 55.000 0.00 0.00 0.00 3.85
63 64 0.905357 AGAGAACGGGGTTGATGGAG 59.095 55.000 0.00 0.00 0.00 3.86
64 65 1.003118 CAAGAGAACGGGGTTGATGGA 59.997 52.381 0.00 0.00 0.00 3.41
65 66 1.003118 TCAAGAGAACGGGGTTGATGG 59.997 52.381 0.00 0.00 0.00 3.51
66 67 2.472695 TCAAGAGAACGGGGTTGATG 57.527 50.000 0.00 0.00 0.00 3.07
67 68 2.779506 GTTCAAGAGAACGGGGTTGAT 58.220 47.619 0.00 0.00 44.11 2.57
68 69 2.249844 GTTCAAGAGAACGGGGTTGA 57.750 50.000 0.00 0.00 44.11 3.18
93 94 3.682315 CCTTGTAGATCGCGCGCG 61.682 66.667 44.84 44.84 41.35 6.86
94 95 2.672908 TACCCTTGTAGATCGCGCGC 62.673 60.000 27.95 23.91 0.00 6.86
95 96 0.039437 ATACCCTTGTAGATCGCGCG 60.039 55.000 26.76 26.76 0.00 6.86
96 97 1.269621 ACATACCCTTGTAGATCGCGC 60.270 52.381 0.00 0.00 0.00 6.86
97 98 2.795175 ACATACCCTTGTAGATCGCG 57.205 50.000 0.00 0.00 0.00 5.87
103 104 5.509840 GGAGTGCATCTACATACCCTTGTAG 60.510 48.000 5.47 5.47 46.85 2.74
104 105 4.344102 GGAGTGCATCTACATACCCTTGTA 59.656 45.833 0.00 0.00 0.00 2.41
105 106 3.134804 GGAGTGCATCTACATACCCTTGT 59.865 47.826 0.00 0.00 0.00 3.16
106 107 3.495100 GGGAGTGCATCTACATACCCTTG 60.495 52.174 0.00 0.00 35.93 3.61
107 108 2.706190 GGGAGTGCATCTACATACCCTT 59.294 50.000 0.00 0.00 35.93 3.95
108 109 2.330216 GGGAGTGCATCTACATACCCT 58.670 52.381 0.00 0.00 35.93 4.34
109 110 1.348036 GGGGAGTGCATCTACATACCC 59.652 57.143 0.00 0.00 37.17 3.69
110 111 2.300437 GAGGGGAGTGCATCTACATACC 59.700 54.545 0.00 0.00 0.00 2.73
111 112 3.235200 AGAGGGGAGTGCATCTACATAC 58.765 50.000 0.00 0.00 0.00 2.39
112 113 3.501349 GAGAGGGGAGTGCATCTACATA 58.499 50.000 0.00 0.00 0.00 2.29
113 114 2.324541 GAGAGGGGAGTGCATCTACAT 58.675 52.381 0.00 0.00 0.00 2.29
114 115 1.689575 GGAGAGGGGAGTGCATCTACA 60.690 57.143 0.00 0.00 0.00 2.74
115 116 1.044611 GGAGAGGGGAGTGCATCTAC 58.955 60.000 0.00 0.00 0.00 2.59
116 117 0.105453 GGGAGAGGGGAGTGCATCTA 60.105 60.000 0.00 0.00 0.00 1.98
117 118 1.383803 GGGAGAGGGGAGTGCATCT 60.384 63.158 0.00 0.00 0.00 2.90
118 119 1.383803 AGGGAGAGGGGAGTGCATC 60.384 63.158 0.00 0.00 0.00 3.91
119 120 1.383803 GAGGGAGAGGGGAGTGCAT 60.384 63.158 0.00 0.00 0.00 3.96
120 121 2.039624 GAGGGAGAGGGGAGTGCA 59.960 66.667 0.00 0.00 0.00 4.57
121 122 3.151022 CGAGGGAGAGGGGAGTGC 61.151 72.222 0.00 0.00 0.00 4.40
122 123 1.305381 AACGAGGGAGAGGGGAGTG 60.305 63.158 0.00 0.00 0.00 3.51
123 124 1.305381 CAACGAGGGAGAGGGGAGT 60.305 63.158 0.00 0.00 0.00 3.85
124 125 2.726351 GCAACGAGGGAGAGGGGAG 61.726 68.421 0.00 0.00 0.00 4.30
125 126 1.870941 TAGCAACGAGGGAGAGGGGA 61.871 60.000 0.00 0.00 0.00 4.81
126 127 1.381327 TAGCAACGAGGGAGAGGGG 60.381 63.158 0.00 0.00 0.00 4.79
127 128 0.395862 TCTAGCAACGAGGGAGAGGG 60.396 60.000 0.00 0.00 0.00 4.30
128 129 1.339610 CATCTAGCAACGAGGGAGAGG 59.660 57.143 0.00 0.00 0.00 3.69
129 130 2.034053 GTCATCTAGCAACGAGGGAGAG 59.966 54.545 0.00 0.00 0.00 3.20
130 131 2.025155 GTCATCTAGCAACGAGGGAGA 58.975 52.381 0.00 0.00 0.00 3.71
131 132 2.028130 AGTCATCTAGCAACGAGGGAG 58.972 52.381 0.00 0.00 0.00 4.30
132 133 2.145397 AGTCATCTAGCAACGAGGGA 57.855 50.000 0.00 0.00 0.00 4.20
133 134 2.166459 TGAAGTCATCTAGCAACGAGGG 59.834 50.000 0.00 0.00 0.00 4.30
134 135 3.510388 TGAAGTCATCTAGCAACGAGG 57.490 47.619 0.00 0.00 0.00 4.63
135 136 6.066054 TCTATGAAGTCATCTAGCAACGAG 57.934 41.667 0.00 0.00 37.76 4.18
136 137 6.641169 ATCTATGAAGTCATCTAGCAACGA 57.359 37.500 0.00 0.00 37.76 3.85
137 138 6.920210 TCAATCTATGAAGTCATCTAGCAACG 59.080 38.462 0.00 0.00 37.76 4.10
138 139 8.830201 ATCAATCTATGAAGTCATCTAGCAAC 57.170 34.615 0.00 0.00 42.54 4.17
139 140 8.868103 AGATCAATCTATGAAGTCATCTAGCAA 58.132 33.333 0.00 0.00 42.54 3.91
140 141 8.419922 AGATCAATCTATGAAGTCATCTAGCA 57.580 34.615 0.00 0.00 42.54 3.49
141 142 9.142515 CAAGATCAATCTATGAAGTCATCTAGC 57.857 37.037 0.00 0.00 42.54 3.42
144 145 9.713713 CATCAAGATCAATCTATGAAGTCATCT 57.286 33.333 0.00 0.00 42.54 2.90
145 146 9.708092 TCATCAAGATCAATCTATGAAGTCATC 57.292 33.333 0.00 0.00 42.54 2.92
147 148 9.490379 CATCATCAAGATCAATCTATGAAGTCA 57.510 33.333 8.71 0.00 42.54 3.41
148 149 8.444715 GCATCATCAAGATCAATCTATGAAGTC 58.555 37.037 8.71 1.18 42.54 3.01
149 150 7.117956 CGCATCATCAAGATCAATCTATGAAGT 59.882 37.037 8.71 0.00 42.54 3.01
150 151 7.117956 ACGCATCATCAAGATCAATCTATGAAG 59.882 37.037 8.71 6.60 42.54 3.02
151 152 6.932960 ACGCATCATCAAGATCAATCTATGAA 59.067 34.615 8.71 0.00 42.54 2.57
152 153 6.461640 ACGCATCATCAAGATCAATCTATGA 58.538 36.000 7.55 7.55 43.67 2.15
153 154 6.723131 ACGCATCATCAAGATCAATCTATG 57.277 37.500 0.00 0.00 35.76 2.23
154 155 7.834803 TCTACGCATCATCAAGATCAATCTAT 58.165 34.615 0.00 0.00 35.76 1.98
155 156 7.219484 TCTACGCATCATCAAGATCAATCTA 57.781 36.000 0.00 0.00 35.76 1.98
156 157 6.094193 TCTACGCATCATCAAGATCAATCT 57.906 37.500 0.00 0.00 39.22 2.40
157 158 6.775939 TTCTACGCATCATCAAGATCAATC 57.224 37.500 0.00 0.00 33.72 2.67
158 159 7.558161 TTTTCTACGCATCATCAAGATCAAT 57.442 32.000 0.00 0.00 33.72 2.57
159 160 6.983474 TTTTCTACGCATCATCAAGATCAA 57.017 33.333 0.00 0.00 33.72 2.57
160 161 7.558161 AATTTTCTACGCATCATCAAGATCA 57.442 32.000 0.00 0.00 33.72 2.92
161 162 8.847444 AAAATTTTCTACGCATCATCAAGATC 57.153 30.769 0.00 0.00 33.72 2.75
170 171 9.675553 GCAGAATTTTAAAATTTTCTACGCATC 57.324 29.630 23.44 9.82 38.64 3.91
171 172 9.423061 AGCAGAATTTTAAAATTTTCTACGCAT 57.577 25.926 23.44 8.91 38.64 4.73
172 173 8.810652 AGCAGAATTTTAAAATTTTCTACGCA 57.189 26.923 23.44 0.00 38.64 5.24
180 181 8.984764 GGGAAACGTAGCAGAATTTTAAAATTT 58.015 29.630 23.44 12.55 38.64 1.82
181 182 8.145122 TGGGAAACGTAGCAGAATTTTAAAATT 58.855 29.630 22.95 22.95 41.06 1.82
182 183 7.662897 TGGGAAACGTAGCAGAATTTTAAAAT 58.337 30.769 7.64 7.64 0.00 1.82
183 184 7.040473 TGGGAAACGTAGCAGAATTTTAAAA 57.960 32.000 2.51 2.51 0.00 1.52
184 185 6.636562 TGGGAAACGTAGCAGAATTTTAAA 57.363 33.333 0.00 0.00 0.00 1.52
185 186 6.039493 TGTTGGGAAACGTAGCAGAATTTTAA 59.961 34.615 0.00 0.00 0.00 1.52
186 187 5.531659 TGTTGGGAAACGTAGCAGAATTTTA 59.468 36.000 0.00 0.00 0.00 1.52
187 188 4.339814 TGTTGGGAAACGTAGCAGAATTTT 59.660 37.500 0.00 0.00 0.00 1.82
188 189 3.886505 TGTTGGGAAACGTAGCAGAATTT 59.113 39.130 0.00 0.00 0.00 1.82
189 190 3.252458 GTGTTGGGAAACGTAGCAGAATT 59.748 43.478 0.00 0.00 0.00 2.17
190 191 2.812011 GTGTTGGGAAACGTAGCAGAAT 59.188 45.455 0.00 0.00 0.00 2.40
191 192 2.215196 GTGTTGGGAAACGTAGCAGAA 58.785 47.619 0.00 0.00 0.00 3.02
192 193 1.870580 CGTGTTGGGAAACGTAGCAGA 60.871 52.381 0.00 0.00 35.13 4.26
193 194 0.511221 CGTGTTGGGAAACGTAGCAG 59.489 55.000 0.00 0.00 35.13 4.24
194 195 2.607457 CGTGTTGGGAAACGTAGCA 58.393 52.632 0.00 0.00 35.13 3.49
199 200 0.948678 ATTGGACGTGTTGGGAAACG 59.051 50.000 0.00 0.00 45.15 3.60
200 201 1.950909 TGATTGGACGTGTTGGGAAAC 59.049 47.619 0.00 0.00 0.00 2.78
201 202 2.350057 TGATTGGACGTGTTGGGAAA 57.650 45.000 0.00 0.00 0.00 3.13
202 203 2.226330 CTTGATTGGACGTGTTGGGAA 58.774 47.619 0.00 0.00 0.00 3.97
203 204 1.544537 CCTTGATTGGACGTGTTGGGA 60.545 52.381 0.00 0.00 0.00 4.37
204 205 0.881118 CCTTGATTGGACGTGTTGGG 59.119 55.000 0.00 0.00 0.00 4.12
205 206 1.890876 TCCTTGATTGGACGTGTTGG 58.109 50.000 0.00 0.00 0.00 3.77
206 207 3.073678 TGATCCTTGATTGGACGTGTTG 58.926 45.455 0.00 0.00 39.17 3.33
207 208 3.074412 GTGATCCTTGATTGGACGTGTT 58.926 45.455 0.00 0.00 39.17 3.32
208 209 2.615493 GGTGATCCTTGATTGGACGTGT 60.615 50.000 0.00 0.00 39.17 4.49
209 210 2.009774 GGTGATCCTTGATTGGACGTG 58.990 52.381 0.00 0.00 39.17 4.49
210 211 1.628340 TGGTGATCCTTGATTGGACGT 59.372 47.619 0.00 0.00 39.17 4.34
211 212 2.401583 TGGTGATCCTTGATTGGACG 57.598 50.000 0.00 0.00 39.17 4.79
212 213 5.220854 CGTTTATGGTGATCCTTGATTGGAC 60.221 44.000 0.00 0.00 39.17 4.02
213 214 4.881273 CGTTTATGGTGATCCTTGATTGGA 59.119 41.667 0.00 0.00 40.82 3.53
214 215 4.036734 CCGTTTATGGTGATCCTTGATTGG 59.963 45.833 0.00 0.00 34.23 3.16
215 216 4.640201 ACCGTTTATGGTGATCCTTGATTG 59.360 41.667 0.00 0.00 41.85 2.67
216 217 4.855340 ACCGTTTATGGTGATCCTTGATT 58.145 39.130 0.00 0.00 41.85 2.57
217 218 4.503714 ACCGTTTATGGTGATCCTTGAT 57.496 40.909 0.00 0.00 41.85 2.57
218 219 3.992943 ACCGTTTATGGTGATCCTTGA 57.007 42.857 0.00 0.00 41.85 3.02
227 228 4.647853 TGTAGCTATCTCACCGTTTATGGT 59.352 41.667 0.00 0.00 45.21 3.55
228 229 5.196341 TGTAGCTATCTCACCGTTTATGG 57.804 43.478 0.00 0.00 0.00 2.74
236 237 2.428890 AGTGCACTGTAGCTATCTCACC 59.571 50.000 20.97 0.00 34.99 4.02
264 265 2.363276 TGACGCAGACCGGGGTAT 60.363 61.111 6.32 0.00 42.52 2.73
269 270 2.094659 GTGATGTGACGCAGACCGG 61.095 63.158 0.00 0.00 42.52 5.28
276 277 1.136690 TCTTGTTCGTGATGTGACGC 58.863 50.000 0.00 0.00 39.27 5.19
278 279 4.904116 TGTTTTCTTGTTCGTGATGTGAC 58.096 39.130 0.00 0.00 0.00 3.67
285 286 6.291743 CCATTGTTCATGTTTTCTTGTTCGTG 60.292 38.462 0.00 0.00 0.00 4.35
286 287 5.748152 CCATTGTTCATGTTTTCTTGTTCGT 59.252 36.000 0.00 0.00 0.00 3.85
287 288 5.332506 GCCATTGTTCATGTTTTCTTGTTCG 60.333 40.000 0.00 0.00 0.00 3.95
288 289 5.754890 AGCCATTGTTCATGTTTTCTTGTTC 59.245 36.000 0.00 0.00 0.00 3.18
289 290 5.673514 AGCCATTGTTCATGTTTTCTTGTT 58.326 33.333 0.00 0.00 0.00 2.83
290 291 5.280654 AGCCATTGTTCATGTTTTCTTGT 57.719 34.783 0.00 0.00 0.00 3.16
291 292 5.981174 CAAGCCATTGTTCATGTTTTCTTG 58.019 37.500 0.00 0.00 0.00 3.02
310 311 4.757149 AGATCAAGAACTGTACCAACAAGC 59.243 41.667 0.00 0.00 34.49 4.01
314 315 6.038997 ACCTAGATCAAGAACTGTACCAAC 57.961 41.667 0.00 0.00 0.00 3.77
318 319 6.100668 GGACAACCTAGATCAAGAACTGTAC 58.899 44.000 0.00 0.00 0.00 2.90
330 331 6.962182 TGATCTGAAATTGGACAACCTAGAT 58.038 36.000 0.00 0.00 37.04 1.98
334 335 5.598005 TGTTTGATCTGAAATTGGACAACCT 59.402 36.000 0.00 0.00 37.04 3.50
335 336 5.841810 TGTTTGATCTGAAATTGGACAACC 58.158 37.500 0.00 0.00 0.00 3.77
336 337 6.738114 TCTGTTTGATCTGAAATTGGACAAC 58.262 36.000 0.00 0.00 0.00 3.32
343 344 5.337009 GCACCCATCTGTTTGATCTGAAATT 60.337 40.000 0.00 0.00 32.05 1.82
382 383 2.203337 TTGCCCACAGCCAGTCAC 60.203 61.111 0.00 0.00 42.71 3.67
399 400 2.751991 CGATAGGGATCAGGTGGCT 58.248 57.895 0.00 0.00 31.78 4.75
412 413 2.402305 GCTTGATCTCTGTGCCGATAG 58.598 52.381 0.00 0.00 0.00 2.08
417 418 1.093159 CTTGGCTTGATCTCTGTGCC 58.907 55.000 0.00 0.00 43.49 5.01
426 427 1.800805 CTCGTGACACTTGGCTTGAT 58.199 50.000 3.68 0.00 0.00 2.57
432 433 1.669115 CCCAGCTCGTGACACTTGG 60.669 63.158 3.68 6.23 0.00 3.61
436 437 0.391130 TATTGCCCAGCTCGTGACAC 60.391 55.000 0.00 0.00 0.00 3.67
439 440 0.323302 TTGTATTGCCCAGCTCGTGA 59.677 50.000 0.00 0.00 0.00 4.35
443 444 3.950395 AGAAGATTTGTATTGCCCAGCTC 59.050 43.478 0.00 0.00 0.00 4.09
515 516 6.155221 GGTCATGATGGAAGGCTATCATAGTA 59.845 42.308 10.17 0.00 46.93 1.82
525 526 2.189499 GGCGGTCATGATGGAAGGC 61.189 63.158 0.00 0.00 0.00 4.35
674 2857 6.528321 TCCTTATGGACAAGATTATCTGCTG 58.472 40.000 0.00 0.00 37.46 4.41
696 2879 3.840890 TGGACGTGCATTTACATTTCC 57.159 42.857 5.33 0.00 0.00 3.13
728 2911 8.592105 ATGCAACATTTATTATTCGGGATTTG 57.408 30.769 0.00 0.00 0.00 2.32
753 2937 5.408604 GCATCTGGTTTCGTCTTCTCTTTTA 59.591 40.000 0.00 0.00 0.00 1.52
952 3143 0.885879 TAGATATAGGCGCGTGGTGG 59.114 55.000 13.84 0.00 0.00 4.61
980 3171 2.301738 GGAAGGTGGGAGAGGTGGG 61.302 68.421 0.00 0.00 0.00 4.61
1448 3665 5.425630 ACACGGAAATACTGGTAAATCTCC 58.574 41.667 0.00 0.00 0.00 3.71
1467 3685 0.986992 GGTTTCACGATCCGTACACG 59.013 55.000 0.00 0.00 38.32 4.49
1501 3719 4.602340 AGCGGAAACAGAGTCTCTTTTA 57.398 40.909 0.00 0.00 0.00 1.52
1732 3967 1.103398 AACCTGCAAGAACAAGCGCT 61.103 50.000 2.64 2.64 34.07 5.92
1736 3971 4.637483 TTGAAGAACCTGCAAGAACAAG 57.363 40.909 0.00 0.00 34.07 3.16
1770 4005 3.827898 GCGTGTCCCCTCTCCTCG 61.828 72.222 0.00 0.00 0.00 4.63
1795 4030 7.713507 CGAAATTGATACCTGGTACTCCATTAA 59.286 37.037 9.09 0.00 43.43 1.40
1797 4032 6.055588 CGAAATTGATACCTGGTACTCCATT 58.944 40.000 9.09 8.68 43.43 3.16
1897 4132 3.054166 CGTTTGTTCTGGTCGACACATA 58.946 45.455 18.91 5.39 0.00 2.29
1898 4133 1.864711 CGTTTGTTCTGGTCGACACAT 59.135 47.619 18.91 0.00 0.00 3.21
1961 4196 0.171231 TCTCAGCATGGTCGAACTCG 59.829 55.000 0.33 0.00 37.44 4.18
1974 4209 3.105659 GGCATCGCCTTTCTCAGC 58.894 61.111 0.00 0.00 46.69 4.26
2006 4241 8.311836 ACGTTCAGAATAAATCTACAAGGAAGA 58.688 33.333 0.00 0.00 36.32 2.87
2014 4250 7.739295 TGCAAAGACGTTCAGAATAAATCTAC 58.261 34.615 0.00 0.00 36.32 2.59
2017 4253 8.452989 AAATGCAAAGACGTTCAGAATAAATC 57.547 30.769 0.00 0.00 0.00 2.17
2019 4255 9.906660 ATAAAATGCAAAGACGTTCAGAATAAA 57.093 25.926 0.00 0.00 0.00 1.40
2028 4264 6.362283 GCACTGTAATAAAATGCAAAGACGTT 59.638 34.615 0.00 0.00 36.30 3.99
2146 4382 1.911357 TCCTGATCTGGCAACACATCT 59.089 47.619 13.60 0.00 46.17 2.90
2183 4420 9.605955 GTTTACTGAACTTTTGCAAAAACATTT 57.394 25.926 23.92 14.65 35.31 2.32
2190 4427 7.262048 CCTAAGGTTTACTGAACTTTTGCAAA 58.738 34.615 8.05 8.05 38.38 3.68
2225 4462 7.936496 TGATGCAAATCCTAACTCATACAAA 57.064 32.000 0.00 0.00 0.00 2.83
2253 4490 7.039011 GCCCATTAATTTATCCTCCCCTAAAAG 60.039 40.741 0.00 0.00 0.00 2.27
2278 4515 1.620819 TCTGACCTCTCCTCAACAAGC 59.379 52.381 0.00 0.00 0.00 4.01
2400 4651 9.415544 CTTCATGCAGTTTAAATAAAAGCTTCT 57.584 29.630 0.00 0.00 32.80 2.85
2437 4688 8.399425 ACTTTGTGTTACGATACATGTTTTGAA 58.601 29.630 2.30 0.00 0.00 2.69
2444 4695 6.887376 AGCTACTTTGTGTTACGATACATG 57.113 37.500 0.00 0.00 0.00 3.21
2449 4700 5.721232 AGCTTAGCTACTTTGTGTTACGAT 58.279 37.500 4.30 0.00 36.99 3.73
2489 4740 8.246430 TGTATCGAGTCAGGGAAACTATTAAT 57.754 34.615 0.00 0.00 0.00 1.40
2490 4741 7.649533 TGTATCGAGTCAGGGAAACTATTAA 57.350 36.000 0.00 0.00 0.00 1.40
2491 4742 7.834881 ATGTATCGAGTCAGGGAAACTATTA 57.165 36.000 0.00 0.00 0.00 0.98
2492 4743 6.732896 ATGTATCGAGTCAGGGAAACTATT 57.267 37.500 0.00 0.00 0.00 1.73
2528 4802 7.485913 CAGGTGTTGCTTTGCTAACAAATATAG 59.514 37.037 0.00 0.00 44.54 1.31
2551 4827 5.373812 AAAACATAGGGTATCAGGTCAGG 57.626 43.478 0.00 0.00 0.00 3.86
2552 4828 7.565680 AGTTAAAACATAGGGTATCAGGTCAG 58.434 38.462 0.00 0.00 0.00 3.51
2553 4829 7.504926 AGTTAAAACATAGGGTATCAGGTCA 57.495 36.000 0.00 0.00 0.00 4.02
2554 4830 7.827729 ACAAGTTAAAACATAGGGTATCAGGTC 59.172 37.037 0.00 0.00 0.00 3.85
2555 4831 7.610305 CACAAGTTAAAACATAGGGTATCAGGT 59.390 37.037 0.00 0.00 0.00 4.00
2556 4832 7.415206 GCACAAGTTAAAACATAGGGTATCAGG 60.415 40.741 0.00 0.00 0.00 3.86
2592 4868 1.133790 GCCAACTCCATTGCTGACATC 59.866 52.381 0.00 0.00 36.93 3.06
2695 4971 8.020777 ACATTGCATATCCCACAATAATTTGA 57.979 30.769 0.00 0.00 36.64 2.69
2696 4972 8.552865 CAACATTGCATATCCCACAATAATTTG 58.447 33.333 0.00 0.00 38.86 2.32
2720 5000 5.122239 CCTCATTTTAGATTCTGTGACGCAA 59.878 40.000 0.00 0.00 0.00 4.85
2752 5033 5.188163 TGCACCTTGTAGCTACCTGTTAATA 59.812 40.000 21.01 0.00 0.00 0.98
2835 5116 5.952347 ATTTAACCCGAGAGTATGGAAGT 57.048 39.130 0.00 0.00 0.00 3.01
2836 5117 6.812998 TGTATTTAACCCGAGAGTATGGAAG 58.187 40.000 0.00 0.00 0.00 3.46
2837 5118 6.608405 TCTGTATTTAACCCGAGAGTATGGAA 59.392 38.462 0.00 0.00 0.00 3.53
2849 5130 7.448748 ACATGTCTTGTTCTGTATTTAACCC 57.551 36.000 0.00 0.00 33.74 4.11
2854 5135 7.928307 ATGCTACATGTCTTGTTCTGTATTT 57.072 32.000 0.00 0.00 39.87 1.40
2865 5146 5.220662 GCAAATGTCGTATGCTACATGTCTT 60.221 40.000 0.00 0.00 36.47 3.01
3025 5306 0.607217 TTGATGCAGCAGTGTCCAGG 60.607 55.000 4.20 0.00 0.00 4.45
3064 5346 5.533154 TCATCCAAACAATGTAAGAAACCGT 59.467 36.000 0.00 0.00 0.00 4.83
3112 5394 0.464013 CCTCCTCAAGCAGCATCTGG 60.464 60.000 0.00 0.00 31.21 3.86
3143 5425 1.571460 GTAGTCGTCGTGTCCGTGT 59.429 57.895 0.00 0.00 35.01 4.49
3144 5426 1.508539 CGTAGTCGTCGTGTCCGTG 60.509 63.158 0.00 0.00 35.01 4.94
3145 5427 2.671177 CCGTAGTCGTCGTGTCCGT 61.671 63.158 0.00 0.00 35.01 4.69
3146 5428 2.097160 CCGTAGTCGTCGTGTCCG 59.903 66.667 0.00 0.00 35.01 4.79
3147 5429 2.482374 CCCGTAGTCGTCGTGTCC 59.518 66.667 0.00 0.00 35.01 4.02
3148 5430 2.202401 GCCCGTAGTCGTCGTGTC 60.202 66.667 0.00 0.00 35.01 3.67
3268 5550 2.635443 AAATCCCAAACCCAGCGCG 61.635 57.895 0.00 0.00 0.00 6.86
3275 5565 7.095397 CCTTCGTTTTATTTCAAATCCCAAACC 60.095 37.037 0.00 0.00 0.00 3.27
3354 5645 5.220912 GCTGCAAGATGTAACAAGATGCATA 60.221 40.000 0.00 0.00 41.00 3.14
3355 5646 4.439700 GCTGCAAGATGTAACAAGATGCAT 60.440 41.667 0.00 0.00 41.00 3.96
3356 5647 3.119743 GCTGCAAGATGTAACAAGATGCA 60.120 43.478 0.00 0.00 39.73 3.96
3357 5648 3.432782 GCTGCAAGATGTAACAAGATGC 58.567 45.455 0.00 0.00 34.07 3.91
3358 5649 3.693085 AGGCTGCAAGATGTAACAAGATG 59.307 43.478 0.50 0.00 34.07 2.90
3359 5650 3.693085 CAGGCTGCAAGATGTAACAAGAT 59.307 43.478 0.00 0.00 34.07 2.40
3360 5651 3.076621 CAGGCTGCAAGATGTAACAAGA 58.923 45.455 0.00 0.00 34.07 3.02
3367 5658 1.905215 AGTAGACAGGCTGCAAGATGT 59.095 47.619 15.89 0.04 37.99 3.06
3395 5686 9.918630 CCTTCCTAAATTATCAGCCAATATTTG 57.081 33.333 0.00 0.00 0.00 2.32
3402 6066 3.436470 GGCCCTTCCTAAATTATCAGCCA 60.436 47.826 0.00 0.00 36.67 4.75
3457 6121 3.563390 CCTGCATTTTTAGAGGCTCTAGC 59.437 47.826 22.47 21.10 41.14 3.42
3459 6123 3.685550 GCCCTGCATTTTTAGAGGCTCTA 60.686 47.826 20.11 20.11 36.00 2.43
3461 6125 1.406898 GCCCTGCATTTTTAGAGGCTC 59.593 52.381 6.34 6.34 36.00 4.70
3465 6129 1.133025 CCGTGCCCTGCATTTTTAGAG 59.867 52.381 0.00 0.00 41.91 2.43
3466 6130 1.173043 CCGTGCCCTGCATTTTTAGA 58.827 50.000 0.00 0.00 41.91 2.10
3468 6132 0.897863 AGCCGTGCCCTGCATTTTTA 60.898 50.000 0.00 0.00 41.91 1.52
3469 6133 2.209315 AGCCGTGCCCTGCATTTTT 61.209 52.632 0.00 0.00 41.91 1.94
3470 6134 2.601367 AGCCGTGCCCTGCATTTT 60.601 55.556 0.00 0.00 41.91 1.82
3472 6136 4.666253 ACAGCCGTGCCCTGCATT 62.666 61.111 0.00 0.00 41.91 3.56
3474 6138 4.892965 AAACAGCCGTGCCCTGCA 62.893 61.111 0.00 0.00 35.60 4.41
3475 6139 1.801309 TAAAAACAGCCGTGCCCTGC 61.801 55.000 0.00 0.00 33.65 4.85
3476 6140 0.671251 TTAAAAACAGCCGTGCCCTG 59.329 50.000 0.00 0.00 36.41 4.45
3487 6151 2.286536 GCCTTCTCGTGCGTTAAAAACA 60.287 45.455 0.00 0.00 0.00 2.83
3495 6159 2.399856 TTTTTGCCTTCTCGTGCGT 58.600 47.368 0.00 0.00 0.00 5.24
3588 6253 0.725686 GTGCGTCGCTGAGAGTAGTA 59.274 55.000 19.50 0.00 0.00 1.82
3590 6255 0.109735 TTGTGCGTCGCTGAGAGTAG 60.110 55.000 19.50 0.00 0.00 2.57
3592 6257 1.067416 TTTGTGCGTCGCTGAGAGT 59.933 52.632 19.50 0.00 0.00 3.24
3593 6258 1.488957 GTTTGTGCGTCGCTGAGAG 59.511 57.895 19.50 0.00 0.00 3.20
3595 6260 2.551270 GGTTTGTGCGTCGCTGAG 59.449 61.111 19.50 0.00 0.00 3.35
3596 6261 3.334751 CGGTTTGTGCGTCGCTGA 61.335 61.111 19.50 1.33 0.00 4.26
3597 6262 3.163110 AACGGTTTGTGCGTCGCTG 62.163 57.895 19.50 2.21 0.00 5.18
3608 6281 3.002348 CGAGAAGAAAAGAGCAACGGTTT 59.998 43.478 0.00 0.00 0.00 3.27
3618 6291 0.506932 CAACGCGCGAGAAGAAAAGA 59.493 50.000 39.36 0.00 0.00 2.52
3658 6347 2.202236 GAGGAGCTGGCCATGGTGAA 62.202 60.000 14.67 0.00 0.00 3.18
3661 6350 3.415087 GGAGGAGCTGGCCATGGT 61.415 66.667 14.67 6.20 0.00 3.55
3678 6367 2.898920 TAGGGTCGGCTACAGGGTCG 62.899 65.000 0.00 0.00 35.48 4.79
3683 6372 0.813184 TTTCGTAGGGTCGGCTACAG 59.187 55.000 0.00 0.00 0.00 2.74
3689 6378 1.359459 GCAAGCTTTCGTAGGGTCGG 61.359 60.000 0.00 0.00 0.00 4.79
3724 6413 2.030262 GCTCCAGCCATAGCGAGG 59.970 66.667 0.00 0.00 46.67 4.63
3797 6486 2.355193 GCCAGAGGAAGGAGCGACT 61.355 63.158 0.00 0.00 0.00 4.18
3799 6488 1.608717 GAAGCCAGAGGAAGGAGCGA 61.609 60.000 0.00 0.00 0.00 4.93
3829 6518 3.657038 AAGGGCAGCTGCATCCCAG 62.657 63.158 37.63 0.00 42.52 4.45
3830 6519 3.664888 AAGGGCAGCTGCATCCCA 61.665 61.111 37.63 0.00 42.52 4.37
3831 6520 3.145551 CAAGGGCAGCTGCATCCC 61.146 66.667 37.63 28.94 44.36 3.85
3832 6521 3.834799 GCAAGGGCAGCTGCATCC 61.835 66.667 37.63 29.65 44.36 3.51
3833 6522 3.834799 GGCAAGGGCAGCTGCATC 61.835 66.667 37.63 27.95 44.36 3.91
3852 6541 1.153667 CAGAGGAAGGAGCGACTGC 60.154 63.158 0.00 0.00 43.24 4.40
3853 6542 1.515020 CCAGAGGAAGGAGCGACTG 59.485 63.158 0.00 0.00 0.00 3.51
3854 6543 2.355193 GCCAGAGGAAGGAGCGACT 61.355 63.158 0.00 0.00 0.00 4.18
3855 6544 1.893919 AAGCCAGAGGAAGGAGCGAC 61.894 60.000 0.00 0.00 0.00 5.19
3856 6545 1.608717 GAAGCCAGAGGAAGGAGCGA 61.609 60.000 0.00 0.00 0.00 4.93
3857 6546 1.153469 GAAGCCAGAGGAAGGAGCG 60.153 63.158 0.00 0.00 0.00 5.03
3858 6547 1.223211 GGAAGCCAGAGGAAGGAGC 59.777 63.158 0.00 0.00 0.00 4.70
3859 6548 0.829990 GAGGAAGCCAGAGGAAGGAG 59.170 60.000 0.00 0.00 0.00 3.69
3860 6549 0.618968 GGAGGAAGCCAGAGGAAGGA 60.619 60.000 0.00 0.00 0.00 3.36
3861 6550 0.620121 AGGAGGAAGCCAGAGGAAGG 60.620 60.000 0.00 0.00 0.00 3.46
3862 6551 0.540923 CAGGAGGAAGCCAGAGGAAG 59.459 60.000 0.00 0.00 0.00 3.46
3863 6552 0.911525 CCAGGAGGAAGCCAGAGGAA 60.912 60.000 0.00 0.00 36.89 3.36
3864 6553 1.306482 CCAGGAGGAAGCCAGAGGA 60.306 63.158 0.00 0.00 36.89 3.71
3865 6554 3.041469 GCCAGGAGGAAGCCAGAGG 62.041 68.421 0.00 0.00 36.89 3.69
3866 6555 1.994507 AGCCAGGAGGAAGCCAGAG 60.995 63.158 0.00 0.00 36.89 3.35
3867 6556 2.123632 AGCCAGGAGGAAGCCAGA 59.876 61.111 0.00 0.00 36.89 3.86
3868 6557 2.271497 CAGCCAGGAGGAAGCCAG 59.729 66.667 0.00 0.00 36.89 4.85
3869 6558 3.333219 CCAGCCAGGAGGAAGCCA 61.333 66.667 0.00 0.00 41.22 4.75
3870 6559 4.120755 CCCAGCCAGGAGGAAGCC 62.121 72.222 0.00 0.00 41.22 4.35
3871 6560 2.336484 GATCCCAGCCAGGAGGAAGC 62.336 65.000 0.00 0.00 39.95 3.86
3872 6561 0.693767 AGATCCCAGCCAGGAGGAAG 60.694 60.000 0.00 0.00 39.95 3.46
3873 6562 0.253347 AAGATCCCAGCCAGGAGGAA 60.253 55.000 0.00 0.00 39.95 3.36
3882 6571 2.464459 CCGACGCAAAGATCCCAGC 61.464 63.158 0.00 0.00 0.00 4.85
3891 6580 1.000394 TCAGAACAGATCCGACGCAAA 60.000 47.619 0.00 0.00 0.00 3.68
3900 6589 4.442375 TTTCTCCGAGTCAGAACAGATC 57.558 45.455 0.00 0.00 29.30 2.75
3904 6593 3.594603 GGATTTCTCCGAGTCAGAACA 57.405 47.619 0.00 0.00 29.30 3.18
3916 6605 4.328440 CACGACATCTTCACAGGATTTCTC 59.672 45.833 0.00 0.00 0.00 2.87
3917 6606 4.248859 CACGACATCTTCACAGGATTTCT 58.751 43.478 0.00 0.00 0.00 2.52
3918 6607 3.372206 CCACGACATCTTCACAGGATTTC 59.628 47.826 0.00 0.00 0.00 2.17
3919 6608 3.244561 ACCACGACATCTTCACAGGATTT 60.245 43.478 0.00 0.00 0.00 2.17
3920 6609 2.303022 ACCACGACATCTTCACAGGATT 59.697 45.455 0.00 0.00 0.00 3.01
3925 6614 0.392706 AGCACCACGACATCTTCACA 59.607 50.000 0.00 0.00 0.00 3.58
3927 6616 1.511850 CAAGCACCACGACATCTTCA 58.488 50.000 0.00 0.00 0.00 3.02
3928 6617 0.166814 GCAAGCACCACGACATCTTC 59.833 55.000 0.00 0.00 0.00 2.87
3929 6618 0.534877 TGCAAGCACCACGACATCTT 60.535 50.000 0.00 0.00 0.00 2.40
3930 6619 0.534877 TTGCAAGCACCACGACATCT 60.535 50.000 0.00 0.00 0.00 2.90
3931 6620 0.310543 TTTGCAAGCACCACGACATC 59.689 50.000 0.00 0.00 0.00 3.06
3932 6621 0.311790 CTTTGCAAGCACCACGACAT 59.688 50.000 0.00 0.00 0.00 3.06
3933 6622 1.723608 CCTTTGCAAGCACCACGACA 61.724 55.000 0.00 0.00 0.00 4.35
3934 6623 1.008538 CCTTTGCAAGCACCACGAC 60.009 57.895 0.00 0.00 0.00 4.34
3936 6625 0.179113 AAACCTTTGCAAGCACCACG 60.179 50.000 0.00 0.00 0.00 4.94
3937 6626 1.570813 GAAACCTTTGCAAGCACCAC 58.429 50.000 0.00 0.00 0.00 4.16
3938 6627 0.102120 CGAAACCTTTGCAAGCACCA 59.898 50.000 0.00 0.00 0.00 4.17
3939 6628 0.597377 CCGAAACCTTTGCAAGCACC 60.597 55.000 0.00 0.00 0.00 5.01
3940 6629 0.597377 CCCGAAACCTTTGCAAGCAC 60.597 55.000 0.00 0.00 0.00 4.40
3944 6633 1.475403 TTCACCCGAAACCTTTGCAA 58.525 45.000 0.00 0.00 0.00 4.08
3945 6634 1.475403 TTTCACCCGAAACCTTTGCA 58.525 45.000 0.00 0.00 36.19 4.08
3946 6635 2.198406 GTTTTCACCCGAAACCTTTGC 58.802 47.619 0.00 0.00 40.84 3.68
3958 7214 2.032924 CAGACGGACAAAGGTTTTCACC 59.967 50.000 0.00 0.00 44.67 4.02
3968 7224 0.039437 GTCGAGAGCAGACGGACAAA 60.039 55.000 0.00 0.00 0.00 2.83
3980 7236 0.805614 ATGGTCGTCACTGTCGAGAG 59.194 55.000 8.24 8.24 37.99 3.20
3981 7237 1.244816 AATGGTCGTCACTGTCGAGA 58.755 50.000 0.00 0.00 37.99 4.04
3986 7242 0.736325 GCGCTAATGGTCGTCACTGT 60.736 55.000 0.00 0.00 0.00 3.55
3992 7248 0.103572 ATAACGGCGCTAATGGTCGT 59.896 50.000 6.90 3.07 35.48 4.34
3996 7252 0.034896 AGGGATAACGGCGCTAATGG 59.965 55.000 6.90 0.00 0.00 3.16
3997 7253 1.429463 GAGGGATAACGGCGCTAATG 58.571 55.000 6.90 0.00 0.00 1.90
3998 7254 0.320697 GGAGGGATAACGGCGCTAAT 59.679 55.000 6.90 0.00 0.00 1.73
4005 7261 1.119574 ATCCACGGGAGGGATAACGG 61.120 60.000 0.00 0.00 43.27 4.44
4016 7272 0.601576 TTCACGACAACATCCACGGG 60.602 55.000 0.00 0.00 0.00 5.28
4020 7276 2.254546 AAGCTTCACGACAACATCCA 57.745 45.000 0.00 0.00 0.00 3.41
4022 7278 5.689819 ACAATTAAGCTTCACGACAACATC 58.310 37.500 0.00 0.00 0.00 3.06
4041 7297 2.952978 TCACACAACGCCCTAAAACAAT 59.047 40.909 0.00 0.00 0.00 2.71
4042 7298 2.097791 GTCACACAACGCCCTAAAACAA 59.902 45.455 0.00 0.00 0.00 2.83
4057 7313 7.316640 AGAAGTATCTGAGTACAATGTCACAC 58.683 38.462 0.00 0.00 33.59 3.82
4107 7363 3.764434 ACTACCCGTATCATGCAGGATAG 59.236 47.826 20.70 12.42 30.73 2.08
4109 7365 2.563179 GACTACCCGTATCATGCAGGAT 59.437 50.000 18.98 18.98 0.00 3.24
4123 7379 5.517322 ACAATGACGATCTTAGACTACCC 57.483 43.478 0.00 0.00 0.00 3.69
4124 7380 7.872881 TCATACAATGACGATCTTAGACTACC 58.127 38.462 0.00 0.00 33.59 3.18
4125 7381 8.775527 TCTCATACAATGACGATCTTAGACTAC 58.224 37.037 0.00 0.00 35.06 2.73
4130 7386 6.676950 AGCTCTCATACAATGACGATCTTAG 58.323 40.000 0.00 0.00 35.06 2.18
4133 7389 5.048364 GGTAGCTCTCATACAATGACGATCT 60.048 44.000 0.00 0.00 35.06 2.75
4139 7395 3.296854 ACGGGTAGCTCTCATACAATGA 58.703 45.455 0.00 0.00 37.76 2.57
4144 7400 4.915158 AAGTTACGGGTAGCTCTCATAC 57.085 45.455 0.00 0.00 0.00 2.39
4153 7409 6.038356 ACGAATGATACAAAGTTACGGGTAG 58.962 40.000 0.00 0.00 0.00 3.18
4159 7415 7.303634 ACATGGACGAATGATACAAAGTTAC 57.696 36.000 0.00 0.00 0.00 2.50
4161 7417 6.876789 TGTACATGGACGAATGATACAAAGTT 59.123 34.615 3.00 0.00 0.00 2.66
4169 7425 5.406477 CGAATCATGTACATGGACGAATGAT 59.594 40.000 30.56 15.10 39.24 2.45
4172 7428 4.944048 TCGAATCATGTACATGGACGAAT 58.056 39.130 30.07 19.13 39.24 3.34
4177 7433 9.996554 AAGTAAATATCGAATCATGTACATGGA 57.003 29.630 30.56 21.36 39.24 3.41
4250 7507 4.566004 CCGGAGTTAGAAACAAGATGTCA 58.434 43.478 0.00 0.00 0.00 3.58
4253 7510 2.348666 CGCCGGAGTTAGAAACAAGATG 59.651 50.000 5.05 0.00 0.00 2.90
4257 7514 0.952010 GCCGCCGGAGTTAGAAACAA 60.952 55.000 7.68 0.00 0.00 2.83
4259 7516 2.104859 GGCCGCCGGAGTTAGAAAC 61.105 63.158 7.68 0.00 0.00 2.78
4315 7582 2.418083 GCGGGCAAATTCTCCCCAG 61.418 63.158 8.83 3.63 39.39 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.