Multiple sequence alignment - TraesCS5A01G152200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G152200 chr5A 100.000 2700 0 0 1 2700 329242065 329239366 0.000000e+00 4987.0
1 TraesCS5A01G152200 chr5D 94.358 2712 98 24 1 2692 245200209 245197533 0.000000e+00 4109.0
2 TraesCS5A01G152200 chr5B 94.253 2697 98 27 18 2697 278469304 278466648 0.000000e+00 4069.0
3 TraesCS5A01G152200 chr5B 100.000 29 0 0 1 29 278469592 278469564 1.000000e-03 54.7
4 TraesCS5A01G152200 chr1A 83.529 170 22 5 1292 1458 391941336 391941170 1.290000e-33 154.0
5 TraesCS5A01G152200 chr1B 82.353 170 24 5 1292 1458 422346722 422346556 2.800000e-30 143.0
6 TraesCS5A01G152200 chr3D 79.787 94 17 2 2594 2686 254102321 254102413 1.730000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G152200 chr5A 329239366 329242065 2699 True 4987.00 4987 100.0000 1 2700 1 chr5A.!!$R1 2699
1 TraesCS5A01G152200 chr5D 245197533 245200209 2676 True 4109.00 4109 94.3580 1 2692 1 chr5D.!!$R1 2691
2 TraesCS5A01G152200 chr5B 278466648 278469592 2944 True 2061.85 4069 97.1265 1 2697 2 chr5B.!!$R1 2696

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
931 1216 0.036765 TAACGAGGGTGTGCATGGAC 60.037 55.0 10.9 10.9 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2503 2798 0.036732 GGCCTGATGTCAAGTGTCCA 59.963 55.0 0.0 0.0 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 301 4.243007 TCCATACGATGATGTAGCAGTG 57.757 45.455 0.00 0.00 0.00 3.66
65 336 2.423517 GGACAAATCCCCAATCTCTCCC 60.424 54.545 0.00 0.00 39.39 4.30
112 383 4.091939 GTTCTAGGGCCGGGCGTT 62.092 66.667 28.94 18.18 0.00 4.84
149 420 1.487976 TCTCCTGGTCTTGGCATGATC 59.512 52.381 6.35 6.53 0.00 2.92
273 549 9.465985 GATTGAATTGAAGCTAGTAGTAGTACC 57.534 37.037 6.47 0.00 0.00 3.34
439 716 5.799213 AGTCTTCGATCTTCACCTCATTTT 58.201 37.500 0.00 0.00 0.00 1.82
454 731 0.817654 ATTTTTGCGGGGAAGCTAGC 59.182 50.000 6.62 6.62 38.13 3.42
461 738 0.105039 CGGGGAAGCTAGCTAGGTTG 59.895 60.000 35.98 20.91 43.36 3.77
519 796 1.667236 TCAGACCGGCAATGCTAATG 58.333 50.000 4.82 0.00 0.00 1.90
520 797 1.209261 TCAGACCGGCAATGCTAATGA 59.791 47.619 4.82 0.33 0.00 2.57
522 799 2.423185 CAGACCGGCAATGCTAATGAAA 59.577 45.455 4.82 0.00 0.00 2.69
523 800 3.067180 CAGACCGGCAATGCTAATGAAAT 59.933 43.478 4.82 0.00 0.00 2.17
524 801 3.316308 AGACCGGCAATGCTAATGAAATC 59.684 43.478 4.82 0.00 0.00 2.17
525 802 3.290710 ACCGGCAATGCTAATGAAATCT 58.709 40.909 4.82 0.00 0.00 2.40
526 803 3.316308 ACCGGCAATGCTAATGAAATCTC 59.684 43.478 4.82 0.00 0.00 2.75
527 804 3.304928 CCGGCAATGCTAATGAAATCTCC 60.305 47.826 4.82 0.00 0.00 3.71
528 805 3.316029 CGGCAATGCTAATGAAATCTCCA 59.684 43.478 4.82 0.00 0.00 3.86
529 806 4.556104 CGGCAATGCTAATGAAATCTCCAG 60.556 45.833 4.82 0.00 0.00 3.86
530 807 4.340381 GGCAATGCTAATGAAATCTCCAGT 59.660 41.667 4.82 0.00 0.00 4.00
531 808 5.279384 GCAATGCTAATGAAATCTCCAGTG 58.721 41.667 0.00 0.00 0.00 3.66
532 809 5.163581 GCAATGCTAATGAAATCTCCAGTGT 60.164 40.000 0.00 0.00 0.00 3.55
533 810 6.493116 CAATGCTAATGAAATCTCCAGTGTC 58.507 40.000 0.00 0.00 0.00 3.67
534 811 5.164620 TGCTAATGAAATCTCCAGTGTCA 57.835 39.130 0.00 0.00 0.00 3.58
535 812 5.748402 TGCTAATGAAATCTCCAGTGTCAT 58.252 37.500 0.00 0.00 0.00 3.06
631 908 2.436646 CCAGCTAAGTGTGGCCGG 60.437 66.667 0.00 0.00 0.00 6.13
679 956 3.200483 CAGAATTGCCAGATCATGACGA 58.800 45.455 0.00 0.00 0.00 4.20
695 972 0.548031 ACGACCATTGGAGGATGCAT 59.452 50.000 10.37 0.00 35.22 3.96
696 973 1.768275 ACGACCATTGGAGGATGCATA 59.232 47.619 10.37 0.00 35.22 3.14
698 975 2.037641 CGACCATTGGAGGATGCATAGA 59.962 50.000 10.37 0.00 35.22 1.98
699 976 3.307269 CGACCATTGGAGGATGCATAGAT 60.307 47.826 10.37 0.00 35.22 1.98
700 977 4.081476 CGACCATTGGAGGATGCATAGATA 60.081 45.833 10.37 0.00 35.22 1.98
701 978 5.426504 GACCATTGGAGGATGCATAGATAG 58.573 45.833 10.37 0.00 35.22 2.08
702 979 5.096521 ACCATTGGAGGATGCATAGATAGA 58.903 41.667 10.37 0.00 35.22 1.98
703 980 5.730207 ACCATTGGAGGATGCATAGATAGAT 59.270 40.000 10.37 0.00 35.22 1.98
704 981 6.217074 ACCATTGGAGGATGCATAGATAGATT 59.783 38.462 10.37 0.00 35.22 2.40
705 982 7.404104 ACCATTGGAGGATGCATAGATAGATTA 59.596 37.037 10.37 0.00 35.22 1.75
706 983 7.714377 CCATTGGAGGATGCATAGATAGATTAC 59.286 40.741 0.00 0.00 35.22 1.89
707 984 8.484575 CATTGGAGGATGCATAGATAGATTACT 58.515 37.037 0.00 0.00 35.22 2.24
708 985 9.720874 ATTGGAGGATGCATAGATAGATTACTA 57.279 33.333 0.00 0.00 35.22 1.82
709 986 8.759481 TGGAGGATGCATAGATAGATTACTAG 57.241 38.462 0.00 0.00 31.78 2.57
755 1032 6.463995 AAATACAGACAAACAAGGCAGAAA 57.536 33.333 0.00 0.00 0.00 2.52
774 1051 1.308998 AGCCTTTACACACACTGCAC 58.691 50.000 0.00 0.00 0.00 4.57
775 1052 0.041312 GCCTTTACACACACTGCACG 60.041 55.000 0.00 0.00 0.00 5.34
787 1064 3.507597 CTGCACGCAGTACCAGTAA 57.492 52.632 10.94 0.00 41.61 2.24
812 1089 5.793030 ACATGGCTCTACACCTATTCTAC 57.207 43.478 0.00 0.00 0.00 2.59
863 1140 5.464722 ACATGACAGAGCTCATTAATTAGCG 59.535 40.000 17.77 5.08 43.63 4.26
931 1216 0.036765 TAACGAGGGTGTGCATGGAC 60.037 55.000 10.90 10.90 0.00 4.02
991 1276 0.914644 CATCTTCCTTCCTGGCTGGA 59.085 55.000 9.30 9.30 44.51 3.86
998 1283 0.255318 CTTCCTGGCTGGATGCTTCT 59.745 55.000 14.32 0.00 45.68 2.85
1054 1339 0.040204 CCCCTTTGCAACCATCTCCT 59.960 55.000 0.00 0.00 0.00 3.69
1056 1341 1.821136 CCCTTTGCAACCATCTCCTTC 59.179 52.381 0.00 0.00 0.00 3.46
1080 1365 6.265196 TCCATTGCTCTATCTTCTCTTCTCTC 59.735 42.308 0.00 0.00 0.00 3.20
1085 1370 6.328934 TGCTCTATCTTCTCTTCTCTCCTCTA 59.671 42.308 0.00 0.00 0.00 2.43
1086 1371 7.147391 TGCTCTATCTTCTCTTCTCTCCTCTAA 60.147 40.741 0.00 0.00 0.00 2.10
1087 1372 7.719633 GCTCTATCTTCTCTTCTCTCCTCTAAA 59.280 40.741 0.00 0.00 0.00 1.85
1088 1373 9.277783 CTCTATCTTCTCTTCTCTCCTCTAAAG 57.722 40.741 0.00 0.00 0.00 1.85
1089 1374 6.715347 ATCTTCTCTTCTCTCCTCTAAAGC 57.285 41.667 0.00 0.00 0.00 3.51
1101 1394 2.421529 CCTCTAAAGCCCCGTAGCAAAT 60.422 50.000 0.00 0.00 34.23 2.32
1107 1400 1.562475 AGCCCCGTAGCAAATAGGAAA 59.438 47.619 0.00 0.00 34.23 3.13
1108 1401 1.947456 GCCCCGTAGCAAATAGGAAAG 59.053 52.381 0.00 0.00 0.00 2.62
1109 1402 1.947456 CCCCGTAGCAAATAGGAAAGC 59.053 52.381 0.00 0.00 0.00 3.51
1110 1403 2.639065 CCCGTAGCAAATAGGAAAGCA 58.361 47.619 0.00 0.00 0.00 3.91
1224 1517 4.770874 GCGCCTTACTTCCCGCCA 62.771 66.667 0.00 0.00 40.51 5.69
1782 2075 3.768406 TGCTTGTGACACATGTTGTTTC 58.232 40.909 19.33 5.73 39.17 2.78
1812 2107 3.792047 CGCATCGCACACACCCAG 61.792 66.667 0.00 0.00 0.00 4.45
1813 2108 2.669569 GCATCGCACACACCCAGT 60.670 61.111 0.00 0.00 0.00 4.00
1814 2109 2.260869 GCATCGCACACACCCAGTT 61.261 57.895 0.00 0.00 0.00 3.16
1815 2110 1.575922 CATCGCACACACCCAGTTG 59.424 57.895 0.00 0.00 0.00 3.16
1816 2111 1.600636 ATCGCACACACCCAGTTGG 60.601 57.895 0.00 0.00 41.37 3.77
1831 2126 2.294233 CAGTTGGGAGTTGGAACACATG 59.706 50.000 0.00 0.00 39.29 3.21
1867 2162 6.208204 GCATAGCACCTCCATTTCTATTCATT 59.792 38.462 0.00 0.00 0.00 2.57
2009 2304 1.532437 TGTTGAAGATGTGAAGCGCAG 59.468 47.619 11.47 0.00 0.00 5.18
2041 2336 2.170397 TCACATGGTATGCACAGTAGGG 59.830 50.000 0.00 0.00 0.00 3.53
2096 2391 3.922171 AGCATCCCAAGGTAGAAGAAG 57.078 47.619 0.00 0.00 0.00 2.85
2438 2733 9.035890 TGATGGAGATGAAGTTCTTTTACTAGA 57.964 33.333 4.17 0.00 0.00 2.43
2439 2734 9.877178 GATGGAGATGAAGTTCTTTTACTAGAA 57.123 33.333 4.17 0.00 0.00 2.10
2478 2773 1.303317 GGGCATCTCCAACGGTGTT 60.303 57.895 0.00 0.00 36.21 3.32
2523 2818 0.036732 GGACACTTGACATCAGGCCA 59.963 55.000 5.01 0.00 0.00 5.36
2527 2822 1.001764 CTTGACATCAGGCCAGGCA 60.002 57.895 15.19 0.00 0.00 4.75
2539 2834 1.296392 CCAGGCAGACGTCATCCAA 59.704 57.895 19.50 0.00 0.00 3.53
2548 2843 2.037772 AGACGTCATCCAATGCTATCCC 59.962 50.000 19.50 0.00 0.00 3.85
2554 2849 4.889409 GTCATCCAATGCTATCCCTCAAAA 59.111 41.667 0.00 0.00 0.00 2.44
2570 2866 7.016296 TCCCTCAAAATTTTCCCTATTTGTCT 58.984 34.615 0.00 0.00 35.01 3.41
2585 2881 0.768221 TGTCTGGCCTCCTCCTTTGT 60.768 55.000 3.32 0.00 0.00 2.83
2589 2885 1.005215 CTGGCCTCCTCCTTTGTCAAT 59.995 52.381 3.32 0.00 0.00 2.57
2631 2927 9.302773 GCAATTCGACGATACATTTAAATAGTC 57.697 33.333 0.00 5.41 0.00 2.59
2639 2935 8.114290 ACGATACATTTAAATAGTCGCAAACAG 58.886 33.333 20.03 2.16 0.00 3.16
2698 2994 6.619801 AGTTTTATATCTCCATCAAACCGC 57.380 37.500 0.00 0.00 0.00 5.68
2699 2995 6.357367 AGTTTTATATCTCCATCAAACCGCT 58.643 36.000 0.00 0.00 0.00 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 301 0.320421 TTGTCCTGCACTAGAACGGC 60.320 55.000 0.00 0.00 0.00 5.68
65 336 2.490991 ACATCATCATCATGCGGACAG 58.509 47.619 0.00 0.00 0.00 3.51
112 383 3.576982 AGGAGAAAACCTGACACGTATGA 59.423 43.478 0.00 0.00 39.01 2.15
172 447 8.784043 AGAAAACAACAGATACCAGTATTTGTC 58.216 33.333 12.74 2.40 39.16 3.18
273 549 6.459066 TCACTCTTCTCTACAAATTGGTGAG 58.541 40.000 9.93 9.93 0.00 3.51
384 661 6.874288 ACATGCATTAATTAGAGAGGAAGC 57.126 37.500 0.00 0.00 0.00 3.86
439 716 1.686325 CCTAGCTAGCTTCCCCGCAA 61.686 60.000 24.88 0.24 0.00 4.85
461 738 8.013378 ACGCTGTTAACATGTACTTGTTTAATC 58.987 33.333 26.38 16.37 40.25 1.75
507 784 4.340381 ACTGGAGATTTCATTAGCATTGCC 59.660 41.667 4.70 0.00 0.00 4.52
519 796 5.349817 CACACACTATGACACTGGAGATTTC 59.650 44.000 0.00 0.00 0.00 2.17
520 797 5.221722 ACACACACTATGACACTGGAGATTT 60.222 40.000 0.00 0.00 0.00 2.17
522 799 3.834813 ACACACACTATGACACTGGAGAT 59.165 43.478 0.00 0.00 0.00 2.75
523 800 3.230976 ACACACACTATGACACTGGAGA 58.769 45.455 0.00 0.00 0.00 3.71
524 801 3.667497 ACACACACTATGACACTGGAG 57.333 47.619 0.00 0.00 0.00 3.86
525 802 4.141824 TGAAACACACACTATGACACTGGA 60.142 41.667 0.00 0.00 0.00 3.86
526 803 4.126437 TGAAACACACACTATGACACTGG 58.874 43.478 0.00 0.00 0.00 4.00
527 804 5.698089 AGATGAAACACACACTATGACACTG 59.302 40.000 0.00 0.00 0.00 3.66
528 805 5.858381 AGATGAAACACACACTATGACACT 58.142 37.500 0.00 0.00 0.00 3.55
529 806 7.652300 TTAGATGAAACACACACTATGACAC 57.348 36.000 0.00 0.00 0.00 3.67
530 807 7.334171 CCATTAGATGAAACACACACTATGACA 59.666 37.037 0.00 0.00 0.00 3.58
531 808 7.549134 TCCATTAGATGAAACACACACTATGAC 59.451 37.037 0.00 0.00 0.00 3.06
532 809 7.619965 TCCATTAGATGAAACACACACTATGA 58.380 34.615 0.00 0.00 0.00 2.15
533 810 7.848223 TCCATTAGATGAAACACACACTATG 57.152 36.000 0.00 0.00 0.00 2.23
534 811 7.554118 CCTTCCATTAGATGAAACACACACTAT 59.446 37.037 0.00 0.00 0.00 2.12
535 812 6.878923 CCTTCCATTAGATGAAACACACACTA 59.121 38.462 0.00 0.00 0.00 2.74
587 864 7.500992 TGTAGAGTCTGGATCAATATTTGACC 58.499 38.462 1.86 0.00 43.48 4.02
675 952 0.107703 TGCATCCTCCAATGGTCGTC 60.108 55.000 0.00 0.00 0.00 4.20
679 956 5.096521 TCTATCTATGCATCCTCCAATGGT 58.903 41.667 0.19 0.00 0.00 3.55
702 979 9.853177 AGCAAAGGTTGATTATTAGCTAGTAAT 57.147 29.630 18.43 18.43 35.40 1.89
703 980 9.109393 CAGCAAAGGTTGATTATTAGCTAGTAA 57.891 33.333 10.72 10.72 0.00 2.24
704 981 7.226720 GCAGCAAAGGTTGATTATTAGCTAGTA 59.773 37.037 0.00 0.00 0.00 1.82
705 982 6.038714 GCAGCAAAGGTTGATTATTAGCTAGT 59.961 38.462 0.00 0.00 0.00 2.57
706 983 6.261826 AGCAGCAAAGGTTGATTATTAGCTAG 59.738 38.462 0.00 0.00 0.00 3.42
707 984 6.122277 AGCAGCAAAGGTTGATTATTAGCTA 58.878 36.000 0.00 0.00 0.00 3.32
708 985 4.952335 AGCAGCAAAGGTTGATTATTAGCT 59.048 37.500 0.00 0.00 0.00 3.32
709 986 5.254339 AGCAGCAAAGGTTGATTATTAGC 57.746 39.130 0.00 0.00 0.00 3.09
755 1032 1.308998 GTGCAGTGTGTGTAAAGGCT 58.691 50.000 0.00 0.00 0.00 4.58
774 1051 3.444916 CCATGTACTTACTGGTACTGCG 58.555 50.000 0.00 0.00 41.64 5.18
775 1052 3.118738 AGCCATGTACTTACTGGTACTGC 60.119 47.826 0.00 6.44 41.64 4.40
787 1064 5.459505 AGAATAGGTGTAGAGCCATGTACT 58.540 41.667 0.00 0.00 0.00 2.73
812 1089 2.735663 GCTGGATCACATTCATCTAGCG 59.264 50.000 2.74 0.00 42.73 4.26
863 1140 9.556030 GATAAACTAGTTTAGTGATGGTTTTGC 57.444 33.333 27.21 1.45 39.39 3.68
892 1169 5.685511 CGTTAATCAGGACAAACAAACAAGG 59.314 40.000 0.00 0.00 0.00 3.61
931 1216 0.107459 GAGGGAGGTTGGCTGCTAAG 60.107 60.000 0.00 0.00 0.00 2.18
991 1276 6.406288 GCTTGGCCTTTTTATAGAAGAAGCAT 60.406 38.462 3.32 0.00 34.35 3.79
998 1283 4.399303 GCAGAGCTTGGCCTTTTTATAGAA 59.601 41.667 3.32 0.00 0.00 2.10
1054 1339 6.610830 AGAGAAGAGAAGATAGAGCAATGGAA 59.389 38.462 0.00 0.00 0.00 3.53
1056 1341 6.409524 AGAGAAGAGAAGATAGAGCAATGG 57.590 41.667 0.00 0.00 0.00 3.16
1080 1365 0.539986 TTGCTACGGGGCTTTAGAGG 59.460 55.000 3.75 0.00 0.00 3.69
1085 1370 1.562475 TCCTATTTGCTACGGGGCTTT 59.438 47.619 3.75 0.00 0.00 3.51
1086 1371 1.209621 TCCTATTTGCTACGGGGCTT 58.790 50.000 3.75 0.00 0.00 4.35
1087 1372 1.209621 TTCCTATTTGCTACGGGGCT 58.790 50.000 3.75 0.00 0.00 5.19
1088 1373 1.947456 CTTTCCTATTTGCTACGGGGC 59.053 52.381 0.00 0.00 0.00 5.80
1089 1374 1.947456 GCTTTCCTATTTGCTACGGGG 59.053 52.381 0.00 0.00 0.00 5.73
1109 1402 4.124351 CGGCCATGGCAGTGCTTG 62.124 66.667 36.56 13.62 44.11 4.01
1188 1481 3.825160 GAACACGCAGTCCCTGGCA 62.825 63.158 0.00 0.00 41.61 4.92
1189 1482 3.050275 GAACACGCAGTCCCTGGC 61.050 66.667 0.00 0.00 41.61 4.85
1323 1616 1.738099 GTACACCAGGCTGCTCACG 60.738 63.158 9.56 0.00 0.00 4.35
1811 2106 2.091885 ACATGTGTTCCAACTCCCAACT 60.092 45.455 0.00 0.00 0.00 3.16
1812 2107 2.306847 ACATGTGTTCCAACTCCCAAC 58.693 47.619 0.00 0.00 0.00 3.77
1813 2108 2.746279 ACATGTGTTCCAACTCCCAA 57.254 45.000 0.00 0.00 0.00 4.12
1814 2109 2.582052 GAACATGTGTTCCAACTCCCA 58.418 47.619 13.56 0.00 46.42 4.37
1824 2119 3.388345 TGCAATGCATGAACATGTGTT 57.612 38.095 2.72 0.00 40.80 3.32
1848 2143 5.887598 TGACCAATGAATAGAAATGGAGGTG 59.112 40.000 0.00 0.00 35.16 4.00
1867 2162 5.304686 ACCAGTTTTTGTCTAGATGACCA 57.695 39.130 0.00 0.00 44.75 4.02
2009 2304 1.609208 ACCATGTGAGTGAAGCCAAC 58.391 50.000 0.00 0.00 0.00 3.77
2041 2336 3.972502 GTGCACGAACAAACTATTTGGAC 59.027 43.478 0.00 0.00 44.81 4.02
2438 2733 5.221621 CCCTAACCAAACCAATCATGTGTTT 60.222 40.000 0.00 0.00 33.20 2.83
2439 2734 4.283212 CCCTAACCAAACCAATCATGTGTT 59.717 41.667 0.00 0.00 0.00 3.32
2478 2773 1.198867 CATTTGGCGTCCGTTTGATGA 59.801 47.619 0.00 0.00 31.07 2.92
2503 2798 0.036732 GGCCTGATGTCAAGTGTCCA 59.963 55.000 0.00 0.00 0.00 4.02
2523 2818 0.745845 GCATTGGATGACGTCTGCCT 60.746 55.000 17.92 0.45 0.00 4.75
2527 2822 2.037772 GGGATAGCATTGGATGACGTCT 59.962 50.000 17.92 1.84 0.00 4.18
2539 2834 5.532155 AGGGAAAATTTTGAGGGATAGCAT 58.468 37.500 8.47 0.00 0.00 3.79
2548 2843 6.591448 GCCAGACAAATAGGGAAAATTTTGAG 59.409 38.462 8.47 0.00 34.13 3.02
2554 2849 4.281657 GAGGCCAGACAAATAGGGAAAAT 58.718 43.478 5.01 0.00 0.00 1.82
2570 2866 1.075601 ATTGACAAAGGAGGAGGCCA 58.924 50.000 5.01 0.00 0.00 5.36
2589 2885 8.476142 CGTCGAATTGCTTTTAATCAAGAAAAA 58.524 29.630 0.00 0.00 0.00 1.94
2612 2908 8.111836 TGTTTGCGACTATTTAAATGTATCGTC 58.888 33.333 21.45 16.71 0.00 4.20
2631 2927 5.221891 ACTATTAGTTGCATCTGTTTGCG 57.778 39.130 7.57 0.00 45.77 4.85
2639 2935 7.065803 TCCAGTGCTTTTACTATTAGTTGCATC 59.934 37.037 0.85 0.00 0.00 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.