Multiple sequence alignment - TraesCS5A01G151200
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5A01G151200 | chr5A | 100.000 | 5851 | 0 | 0 | 1 | 5851 | 328797423 | 328803273 | 0.000000e+00 | 10805.0 |
1 | TraesCS5A01G151200 | chr5A | 89.095 | 862 | 63 | 12 | 2 | 856 | 143593709 | 143594546 | 0.000000e+00 | 1042.0 |
2 | TraesCS5A01G151200 | chr5A | 85.994 | 357 | 41 | 9 | 3089 | 3439 | 667026865 | 667027218 | 1.990000e-99 | 374.0 |
3 | TraesCS5A01G151200 | chr5A | 88.085 | 235 | 22 | 3 | 5155 | 5389 | 503771650 | 503771422 | 2.080000e-69 | 274.0 |
4 | TraesCS5A01G151200 | chr5A | 86.547 | 223 | 24 | 5 | 3222 | 3440 | 531217297 | 531217077 | 2.110000e-59 | 241.0 |
5 | TraesCS5A01G151200 | chr5A | 88.652 | 141 | 13 | 2 | 3094 | 3233 | 531218776 | 531218638 | 1.010000e-37 | 169.0 |
6 | TraesCS5A01G151200 | chr5B | 94.515 | 4959 | 180 | 39 | 960 | 5851 | 278005508 | 278010441 | 0.000000e+00 | 7566.0 |
7 | TraesCS5A01G151200 | chr5B | 89.468 | 864 | 58 | 14 | 1 | 855 | 550170400 | 550171239 | 0.000000e+00 | 1061.0 |
8 | TraesCS5A01G151200 | chr5D | 95.160 | 4029 | 130 | 29 | 960 | 4942 | 244617771 | 244621780 | 0.000000e+00 | 6300.0 |
9 | TraesCS5A01G151200 | chr5D | 90.234 | 942 | 68 | 12 | 4926 | 5851 | 244621790 | 244622723 | 0.000000e+00 | 1208.0 |
10 | TraesCS5A01G151200 | chr3A | 89.838 | 866 | 56 | 14 | 1 | 859 | 712722856 | 712723696 | 0.000000e+00 | 1083.0 |
11 | TraesCS5A01G151200 | chr3A | 89.211 | 862 | 62 | 12 | 1 | 855 | 12178306 | 12177469 | 0.000000e+00 | 1048.0 |
12 | TraesCS5A01G151200 | chr3A | 89.211 | 862 | 61 | 12 | 1 | 855 | 688890590 | 688891426 | 0.000000e+00 | 1048.0 |
13 | TraesCS5A01G151200 | chr3A | 88.876 | 863 | 64 | 12 | 1 | 855 | 597968645 | 597969483 | 0.000000e+00 | 1033.0 |
14 | TraesCS5A01G151200 | chr3A | 87.339 | 853 | 55 | 23 | 11 | 856 | 696640123 | 696639317 | 0.000000e+00 | 928.0 |
15 | TraesCS5A01G151200 | chr3A | 85.501 | 469 | 43 | 9 | 395 | 856 | 67148488 | 67148938 | 3.190000e-127 | 466.0 |
16 | TraesCS5A01G151200 | chr6B | 89.340 | 863 | 60 | 12 | 1 | 855 | 213304841 | 213305679 | 0.000000e+00 | 1055.0 |
17 | TraesCS5A01G151200 | chr6B | 80.392 | 102 | 18 | 2 | 5185 | 5286 | 47268416 | 47268317 | 6.290000e-10 | 76.8 |
18 | TraesCS5A01G151200 | chr3B | 89.224 | 863 | 61 | 12 | 1 | 855 | 409279300 | 409278462 | 0.000000e+00 | 1050.0 |
19 | TraesCS5A01G151200 | chr3B | 86.775 | 862 | 58 | 23 | 1 | 855 | 552474672 | 552475484 | 0.000000e+00 | 909.0 |
20 | TraesCS5A01G151200 | chr1B | 89.211 | 862 | 61 | 12 | 1 | 855 | 27083388 | 27084224 | 0.000000e+00 | 1048.0 |
21 | TraesCS5A01G151200 | chr1B | 89.224 | 863 | 60 | 12 | 1 | 855 | 569979174 | 569980011 | 0.000000e+00 | 1048.0 |
22 | TraesCS5A01G151200 | chr2B | 89.799 | 696 | 40 | 12 | 173 | 860 | 8428674 | 8428002 | 0.000000e+00 | 863.0 |
23 | TraesCS5A01G151200 | chr4D | 88.817 | 465 | 27 | 9 | 398 | 855 | 64181649 | 64181203 | 1.110000e-151 | 547.0 |
24 | TraesCS5A01G151200 | chr4B | 87.216 | 352 | 36 | 8 | 3094 | 3440 | 75737994 | 75737647 | 5.500000e-105 | 392.0 |
25 | TraesCS5A01G151200 | chr1A | 85.915 | 355 | 41 | 8 | 3091 | 3440 | 65759836 | 65760186 | 2.580000e-98 | 370.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5A01G151200 | chr5A | 328797423 | 328803273 | 5850 | False | 10805 | 10805 | 100.0000 | 1 | 5851 | 1 | chr5A.!!$F2 | 5850 |
1 | TraesCS5A01G151200 | chr5A | 143593709 | 143594546 | 837 | False | 1042 | 1042 | 89.0950 | 2 | 856 | 1 | chr5A.!!$F1 | 854 |
2 | TraesCS5A01G151200 | chr5A | 531217077 | 531218776 | 1699 | True | 205 | 241 | 87.5995 | 3094 | 3440 | 2 | chr5A.!!$R2 | 346 |
3 | TraesCS5A01G151200 | chr5B | 278005508 | 278010441 | 4933 | False | 7566 | 7566 | 94.5150 | 960 | 5851 | 1 | chr5B.!!$F1 | 4891 |
4 | TraesCS5A01G151200 | chr5B | 550170400 | 550171239 | 839 | False | 1061 | 1061 | 89.4680 | 1 | 855 | 1 | chr5B.!!$F2 | 854 |
5 | TraesCS5A01G151200 | chr5D | 244617771 | 244622723 | 4952 | False | 3754 | 6300 | 92.6970 | 960 | 5851 | 2 | chr5D.!!$F1 | 4891 |
6 | TraesCS5A01G151200 | chr3A | 712722856 | 712723696 | 840 | False | 1083 | 1083 | 89.8380 | 1 | 859 | 1 | chr3A.!!$F4 | 858 |
7 | TraesCS5A01G151200 | chr3A | 12177469 | 12178306 | 837 | True | 1048 | 1048 | 89.2110 | 1 | 855 | 1 | chr3A.!!$R1 | 854 |
8 | TraesCS5A01G151200 | chr3A | 688890590 | 688891426 | 836 | False | 1048 | 1048 | 89.2110 | 1 | 855 | 1 | chr3A.!!$F3 | 854 |
9 | TraesCS5A01G151200 | chr3A | 597968645 | 597969483 | 838 | False | 1033 | 1033 | 88.8760 | 1 | 855 | 1 | chr3A.!!$F2 | 854 |
10 | TraesCS5A01G151200 | chr3A | 696639317 | 696640123 | 806 | True | 928 | 928 | 87.3390 | 11 | 856 | 1 | chr3A.!!$R2 | 845 |
11 | TraesCS5A01G151200 | chr6B | 213304841 | 213305679 | 838 | False | 1055 | 1055 | 89.3400 | 1 | 855 | 1 | chr6B.!!$F1 | 854 |
12 | TraesCS5A01G151200 | chr3B | 409278462 | 409279300 | 838 | True | 1050 | 1050 | 89.2240 | 1 | 855 | 1 | chr3B.!!$R1 | 854 |
13 | TraesCS5A01G151200 | chr3B | 552474672 | 552475484 | 812 | False | 909 | 909 | 86.7750 | 1 | 855 | 1 | chr3B.!!$F1 | 854 |
14 | TraesCS5A01G151200 | chr1B | 27083388 | 27084224 | 836 | False | 1048 | 1048 | 89.2110 | 1 | 855 | 1 | chr1B.!!$F1 | 854 |
15 | TraesCS5A01G151200 | chr1B | 569979174 | 569980011 | 837 | False | 1048 | 1048 | 89.2240 | 1 | 855 | 1 | chr1B.!!$F2 | 854 |
16 | TraesCS5A01G151200 | chr2B | 8428002 | 8428674 | 672 | True | 863 | 863 | 89.7990 | 173 | 860 | 1 | chr2B.!!$R1 | 687 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
892 | 902 | 0.033920 | AAACACTACCGGACGGAACC | 59.966 | 55.000 | 18.80 | 0.00 | 38.96 | 3.62 | F |
1007 | 1017 | 0.105760 | AGAGCCGGTGAGATGGAGAT | 60.106 | 55.000 | 1.90 | 0.00 | 0.00 | 2.75 | F |
1102 | 1112 | 0.949105 | AAAGAAGGCGTCGAATGCGT | 60.949 | 50.000 | 0.00 | 2.87 | 38.98 | 5.24 | F |
1281 | 1291 | 1.000731 | GAGATGGCGAGGGAGAAGATG | 59.999 | 57.143 | 0.00 | 0.00 | 0.00 | 2.90 | F |
1293 | 1303 | 1.057361 | GAAGATGTTGTCGCGCGAC | 59.943 | 57.895 | 46.11 | 46.11 | 44.77 | 5.19 | F |
2979 | 3004 | 1.304630 | TTCGATCGTGGGGAGGTCA | 60.305 | 57.895 | 15.94 | 0.00 | 0.00 | 4.02 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2415 | 2439 | 0.176680 | CCACTTCCAGATGGGTCTCG | 59.823 | 60.000 | 0.00 | 0.0 | 38.11 | 4.04 | R |
2983 | 3008 | 0.250901 | GTTGTGATGGTGAGCCTGGT | 60.251 | 55.000 | 0.00 | 0.0 | 35.27 | 4.00 | R |
3092 | 3117 | 2.106566 | TGGGCACAAATCAAACACACT | 58.893 | 42.857 | 0.00 | 0.0 | 0.00 | 3.55 | R |
3268 | 4645 | 7.016153 | ACACTGATCAATCCTAGTTACCAAA | 57.984 | 36.000 | 0.00 | 0.0 | 0.00 | 3.28 | R |
3315 | 4693 | 7.761038 | ACAGGTGTCCCTTCTTTTTAATTAG | 57.239 | 36.000 | 0.00 | 0.0 | 39.89 | 1.73 | R |
4887 | 6291 | 1.065854 | ACTAGCTAGCAACAGCCTTGG | 60.066 | 52.381 | 20.91 | 0.0 | 42.84 | 3.61 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
35 | 36 | 2.435938 | GAGCGGCGGATGTTTGGA | 60.436 | 61.111 | 9.78 | 0.00 | 0.00 | 3.53 |
56 | 57 | 1.971167 | CGGCTGGGCTTGCTACAAA | 60.971 | 57.895 | 2.80 | 0.00 | 0.00 | 2.83 |
62 | 63 | 3.004106 | GCTGGGCTTGCTACAAATCATAG | 59.996 | 47.826 | 0.00 | 0.00 | 0.00 | 2.23 |
65 | 66 | 2.887152 | GGCTTGCTACAAATCATAGGGG | 59.113 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
69 | 70 | 5.440610 | CTTGCTACAAATCATAGGGGAAGT | 58.559 | 41.667 | 0.00 | 0.00 | 0.00 | 3.01 |
89 | 90 | 0.249120 | TGTCGCCGAGGACAAATCAT | 59.751 | 50.000 | 6.11 | 0.00 | 43.55 | 2.45 |
128 | 129 | 7.161404 | GGAAATTTTATCAAAGCTTTCAGGGT | 58.839 | 34.615 | 9.23 | 0.00 | 31.16 | 4.34 |
137 | 138 | 3.370840 | AGCTTTCAGGGTAATGATGCA | 57.629 | 42.857 | 0.00 | 0.00 | 33.91 | 3.96 |
140 | 141 | 3.887716 | GCTTTCAGGGTAATGATGCAGAT | 59.112 | 43.478 | 0.00 | 0.00 | 32.63 | 2.90 |
200 | 201 | 2.161078 | TATGGTGGCAGCGTCGACAA | 62.161 | 55.000 | 15.66 | 0.00 | 0.00 | 3.18 |
215 | 216 | 5.677091 | GCGTCGACAAATAGTAAAGGGAGTA | 60.677 | 44.000 | 17.16 | 0.00 | 0.00 | 2.59 |
216 | 217 | 6.324819 | CGTCGACAAATAGTAAAGGGAGTAA | 58.675 | 40.000 | 17.16 | 0.00 | 0.00 | 2.24 |
217 | 218 | 6.976925 | CGTCGACAAATAGTAAAGGGAGTAAT | 59.023 | 38.462 | 17.16 | 0.00 | 0.00 | 1.89 |
218 | 219 | 8.131100 | CGTCGACAAATAGTAAAGGGAGTAATA | 58.869 | 37.037 | 17.16 | 0.00 | 0.00 | 0.98 |
219 | 220 | 9.978044 | GTCGACAAATAGTAAAGGGAGTAATAT | 57.022 | 33.333 | 11.55 | 0.00 | 0.00 | 1.28 |
361 | 362 | 5.066593 | GGACATGGGATCCTGAAGATAAAC | 58.933 | 45.833 | 12.58 | 0.00 | 34.42 | 2.01 |
440 | 442 | 5.535333 | GAGACGACCGGGATGATTTTATTA | 58.465 | 41.667 | 6.32 | 0.00 | 0.00 | 0.98 |
455 | 457 | 4.782019 | TTTATTACTGCAGCAAGTTGGG | 57.218 | 40.909 | 15.27 | 0.00 | 0.00 | 4.12 |
456 | 458 | 1.549203 | ATTACTGCAGCAAGTTGGGG | 58.451 | 50.000 | 15.27 | 0.00 | 0.00 | 4.96 |
483 | 485 | 4.346709 | TCCAAACATCAGTGGAGTTGACTA | 59.653 | 41.667 | 2.56 | 0.00 | 39.04 | 2.59 |
512 | 515 | 0.110486 | AACTGCCATCAGAAACGGGT | 59.890 | 50.000 | 0.00 | 0.00 | 42.95 | 5.28 |
517 | 520 | 2.290641 | TGCCATCAGAAACGGGTTGTAT | 60.291 | 45.455 | 0.00 | 0.00 | 0.00 | 2.29 |
548 | 551 | 5.243507 | ACTCACATTGGATGCAACAACATAA | 59.756 | 36.000 | 0.12 | 0.00 | 0.00 | 1.90 |
590 | 593 | 1.367840 | GCGGTGGACTCAGTGAACT | 59.632 | 57.895 | 0.00 | 0.00 | 0.00 | 3.01 |
593 | 596 | 2.547218 | GCGGTGGACTCAGTGAACTAAA | 60.547 | 50.000 | 0.00 | 0.00 | 0.00 | 1.85 |
675 | 685 | 5.650266 | TGCGTCCATATCCTTTAAACATTGT | 59.350 | 36.000 | 0.00 | 0.00 | 0.00 | 2.71 |
754 | 764 | 9.965824 | CTAGATCTTCTAGTTTTTGAGATCCTC | 57.034 | 37.037 | 0.00 | 0.00 | 41.12 | 3.71 |
755 | 765 | 8.608185 | AGATCTTCTAGTTTTTGAGATCCTCT | 57.392 | 34.615 | 7.76 | 0.00 | 33.31 | 3.69 |
756 | 766 | 9.707957 | AGATCTTCTAGTTTTTGAGATCCTCTA | 57.292 | 33.333 | 7.76 | 0.00 | 33.31 | 2.43 |
757 | 767 | 9.965824 | GATCTTCTAGTTTTTGAGATCCTCTAG | 57.034 | 37.037 | 0.00 | 0.00 | 0.00 | 2.43 |
758 | 768 | 8.887264 | TCTTCTAGTTTTTGAGATCCTCTAGT | 57.113 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
759 | 769 | 9.315363 | TCTTCTAGTTTTTGAGATCCTCTAGTT | 57.685 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
760 | 770 | 9.936759 | CTTCTAGTTTTTGAGATCCTCTAGTTT | 57.063 | 33.333 | 0.00 | 0.00 | 0.00 | 2.66 |
764 | 774 | 8.980481 | AGTTTTTGAGATCCTCTAGTTTTTGA | 57.020 | 30.769 | 0.00 | 0.00 | 0.00 | 2.69 |
813 | 823 | 5.587443 | TCTCATCTGCTTGTAAATGACATGG | 59.413 | 40.000 | 0.00 | 0.00 | 38.07 | 3.66 |
881 | 891 | 6.712301 | CAACGTTGCTCTTAAAAACACTAC | 57.288 | 37.500 | 16.51 | 0.00 | 0.00 | 2.73 |
882 | 892 | 5.413969 | ACGTTGCTCTTAAAAACACTACC | 57.586 | 39.130 | 0.00 | 0.00 | 0.00 | 3.18 |
883 | 893 | 4.025480 | ACGTTGCTCTTAAAAACACTACCG | 60.025 | 41.667 | 0.00 | 0.00 | 0.00 | 4.02 |
884 | 894 | 4.609783 | CGTTGCTCTTAAAAACACTACCGG | 60.610 | 45.833 | 0.00 | 0.00 | 0.00 | 5.28 |
885 | 895 | 4.339872 | TGCTCTTAAAAACACTACCGGA | 57.660 | 40.909 | 9.46 | 0.00 | 0.00 | 5.14 |
886 | 896 | 4.060205 | TGCTCTTAAAAACACTACCGGAC | 58.940 | 43.478 | 9.46 | 0.00 | 0.00 | 4.79 |
887 | 897 | 3.122445 | GCTCTTAAAAACACTACCGGACG | 59.878 | 47.826 | 9.46 | 0.00 | 0.00 | 4.79 |
888 | 898 | 3.652274 | TCTTAAAAACACTACCGGACGG | 58.348 | 45.455 | 9.46 | 9.56 | 42.03 | 4.79 |
889 | 899 | 3.320541 | TCTTAAAAACACTACCGGACGGA | 59.679 | 43.478 | 18.80 | 0.25 | 38.96 | 4.69 |
890 | 900 | 2.618442 | AAAAACACTACCGGACGGAA | 57.382 | 45.000 | 18.80 | 0.00 | 38.96 | 4.30 |
891 | 901 | 1.869774 | AAAACACTACCGGACGGAAC | 58.130 | 50.000 | 18.80 | 0.00 | 38.96 | 3.62 |
892 | 902 | 0.033920 | AAACACTACCGGACGGAACC | 59.966 | 55.000 | 18.80 | 0.00 | 38.96 | 3.62 |
893 | 903 | 1.820010 | AACACTACCGGACGGAACCC | 61.820 | 60.000 | 18.80 | 0.00 | 38.96 | 4.11 |
903 | 913 | 4.473520 | CGGAACCCGCTGGCTGAT | 62.474 | 66.667 | 0.00 | 0.00 | 41.17 | 2.90 |
904 | 914 | 2.044946 | GGAACCCGCTGGCTGATT | 60.045 | 61.111 | 0.00 | 0.00 | 33.59 | 2.57 |
905 | 915 | 2.115291 | GGAACCCGCTGGCTGATTC | 61.115 | 63.158 | 0.00 | 0.00 | 33.59 | 2.52 |
906 | 916 | 1.078143 | GAACCCGCTGGCTGATTCT | 60.078 | 57.895 | 0.00 | 0.00 | 33.59 | 2.40 |
907 | 917 | 0.178068 | GAACCCGCTGGCTGATTCTA | 59.822 | 55.000 | 0.00 | 0.00 | 33.59 | 2.10 |
908 | 918 | 0.179000 | AACCCGCTGGCTGATTCTAG | 59.821 | 55.000 | 0.00 | 0.00 | 33.59 | 2.43 |
909 | 919 | 1.070445 | CCCGCTGGCTGATTCTAGG | 59.930 | 63.158 | 0.00 | 0.00 | 0.00 | 3.02 |
910 | 920 | 1.690219 | CCCGCTGGCTGATTCTAGGT | 61.690 | 60.000 | 0.00 | 0.00 | 0.00 | 3.08 |
911 | 921 | 0.179000 | CCGCTGGCTGATTCTAGGTT | 59.821 | 55.000 | 0.00 | 0.00 | 0.00 | 3.50 |
912 | 922 | 1.407437 | CCGCTGGCTGATTCTAGGTTT | 60.407 | 52.381 | 0.00 | 0.00 | 0.00 | 3.27 |
913 | 923 | 2.359900 | CGCTGGCTGATTCTAGGTTTT | 58.640 | 47.619 | 0.00 | 0.00 | 0.00 | 2.43 |
914 | 924 | 2.352960 | CGCTGGCTGATTCTAGGTTTTC | 59.647 | 50.000 | 0.00 | 0.00 | 0.00 | 2.29 |
915 | 925 | 3.615155 | GCTGGCTGATTCTAGGTTTTCT | 58.385 | 45.455 | 0.00 | 0.00 | 0.00 | 2.52 |
916 | 926 | 4.013050 | GCTGGCTGATTCTAGGTTTTCTT | 58.987 | 43.478 | 0.00 | 0.00 | 0.00 | 2.52 |
917 | 927 | 4.460731 | GCTGGCTGATTCTAGGTTTTCTTT | 59.539 | 41.667 | 0.00 | 0.00 | 0.00 | 2.52 |
918 | 928 | 5.648092 | GCTGGCTGATTCTAGGTTTTCTTTA | 59.352 | 40.000 | 0.00 | 0.00 | 0.00 | 1.85 |
919 | 929 | 6.403746 | GCTGGCTGATTCTAGGTTTTCTTTAC | 60.404 | 42.308 | 0.00 | 0.00 | 0.00 | 2.01 |
920 | 930 | 6.779860 | TGGCTGATTCTAGGTTTTCTTTACT | 58.220 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
921 | 931 | 6.879458 | TGGCTGATTCTAGGTTTTCTTTACTC | 59.121 | 38.462 | 0.00 | 0.00 | 0.00 | 2.59 |
922 | 932 | 7.106890 | GGCTGATTCTAGGTTTTCTTTACTCT | 58.893 | 38.462 | 0.00 | 0.00 | 0.00 | 3.24 |
923 | 933 | 7.608376 | GGCTGATTCTAGGTTTTCTTTACTCTT | 59.392 | 37.037 | 0.00 | 0.00 | 0.00 | 2.85 |
924 | 934 | 8.661257 | GCTGATTCTAGGTTTTCTTTACTCTTC | 58.339 | 37.037 | 0.00 | 0.00 | 0.00 | 2.87 |
925 | 935 | 9.157104 | CTGATTCTAGGTTTTCTTTACTCTTCC | 57.843 | 37.037 | 0.00 | 0.00 | 0.00 | 3.46 |
926 | 936 | 8.101419 | TGATTCTAGGTTTTCTTTACTCTTCCC | 58.899 | 37.037 | 0.00 | 0.00 | 0.00 | 3.97 |
927 | 937 | 6.370186 | TCTAGGTTTTCTTTACTCTTCCCC | 57.630 | 41.667 | 0.00 | 0.00 | 0.00 | 4.81 |
928 | 938 | 5.847817 | TCTAGGTTTTCTTTACTCTTCCCCA | 59.152 | 40.000 | 0.00 | 0.00 | 0.00 | 4.96 |
929 | 939 | 4.726583 | AGGTTTTCTTTACTCTTCCCCAC | 58.273 | 43.478 | 0.00 | 0.00 | 0.00 | 4.61 |
930 | 940 | 3.825014 | GGTTTTCTTTACTCTTCCCCACC | 59.175 | 47.826 | 0.00 | 0.00 | 0.00 | 4.61 |
931 | 941 | 4.447325 | GGTTTTCTTTACTCTTCCCCACCT | 60.447 | 45.833 | 0.00 | 0.00 | 0.00 | 4.00 |
932 | 942 | 5.138276 | GTTTTCTTTACTCTTCCCCACCTT | 58.862 | 41.667 | 0.00 | 0.00 | 0.00 | 3.50 |
933 | 943 | 4.635699 | TTCTTTACTCTTCCCCACCTTC | 57.364 | 45.455 | 0.00 | 0.00 | 0.00 | 3.46 |
934 | 944 | 2.565834 | TCTTTACTCTTCCCCACCTTCG | 59.434 | 50.000 | 0.00 | 0.00 | 0.00 | 3.79 |
935 | 945 | 1.272807 | TTACTCTTCCCCACCTTCGG | 58.727 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
936 | 946 | 0.616679 | TACTCTTCCCCACCTTCGGG | 60.617 | 60.000 | 0.00 | 0.00 | 46.94 | 5.14 |
945 | 955 | 1.339097 | CCACCTTCGGGATAGTAGGG | 58.661 | 60.000 | 0.00 | 0.00 | 38.77 | 3.53 |
946 | 956 | 1.412649 | CCACCTTCGGGATAGTAGGGT | 60.413 | 57.143 | 0.00 | 0.00 | 38.77 | 4.34 |
947 | 957 | 2.395619 | CACCTTCGGGATAGTAGGGTT | 58.604 | 52.381 | 0.00 | 0.00 | 38.77 | 4.11 |
948 | 958 | 2.770232 | CACCTTCGGGATAGTAGGGTTT | 59.230 | 50.000 | 0.00 | 0.00 | 38.77 | 3.27 |
949 | 959 | 2.770232 | ACCTTCGGGATAGTAGGGTTTG | 59.230 | 50.000 | 0.00 | 0.00 | 38.77 | 2.93 |
950 | 960 | 2.484947 | CCTTCGGGATAGTAGGGTTTGC | 60.485 | 54.545 | 0.00 | 0.00 | 37.25 | 3.68 |
951 | 961 | 1.868713 | TCGGGATAGTAGGGTTTGCA | 58.131 | 50.000 | 0.00 | 0.00 | 0.00 | 4.08 |
952 | 962 | 2.404559 | TCGGGATAGTAGGGTTTGCAT | 58.595 | 47.619 | 0.00 | 0.00 | 0.00 | 3.96 |
953 | 963 | 3.578978 | TCGGGATAGTAGGGTTTGCATA | 58.421 | 45.455 | 0.00 | 0.00 | 0.00 | 3.14 |
954 | 964 | 3.576982 | TCGGGATAGTAGGGTTTGCATAG | 59.423 | 47.826 | 0.00 | 0.00 | 0.00 | 2.23 |
955 | 965 | 3.676093 | GGGATAGTAGGGTTTGCATAGC | 58.324 | 50.000 | 0.00 | 0.00 | 0.00 | 2.97 |
956 | 966 | 3.326747 | GGATAGTAGGGTTTGCATAGCG | 58.673 | 50.000 | 0.21 | 0.00 | 0.00 | 4.26 |
957 | 967 | 2.902705 | TAGTAGGGTTTGCATAGCGG | 57.097 | 50.000 | 0.21 | 0.00 | 0.00 | 5.52 |
958 | 968 | 0.463833 | AGTAGGGTTTGCATAGCGGC | 60.464 | 55.000 | 0.21 | 0.00 | 0.00 | 6.53 |
959 | 969 | 0.463833 | GTAGGGTTTGCATAGCGGCT | 60.464 | 55.000 | 7.98 | 7.98 | 34.04 | 5.52 |
960 | 970 | 1.124780 | TAGGGTTTGCATAGCGGCTA | 58.875 | 50.000 | 12.80 | 12.80 | 34.04 | 3.93 |
961 | 971 | 0.179045 | AGGGTTTGCATAGCGGCTAG | 60.179 | 55.000 | 15.78 | 8.66 | 34.04 | 3.42 |
962 | 972 | 1.166531 | GGGTTTGCATAGCGGCTAGG | 61.167 | 60.000 | 16.75 | 16.75 | 34.04 | 3.02 |
963 | 973 | 1.166531 | GGTTTGCATAGCGGCTAGGG | 61.167 | 60.000 | 21.56 | 14.00 | 34.04 | 3.53 |
983 | 993 | 1.733389 | GCGACGGGAACAATCGAACTA | 60.733 | 52.381 | 0.00 | 0.00 | 40.13 | 2.24 |
984 | 994 | 2.598589 | CGACGGGAACAATCGAACTAA | 58.401 | 47.619 | 0.00 | 0.00 | 40.13 | 2.24 |
985 | 995 | 2.343544 | CGACGGGAACAATCGAACTAAC | 59.656 | 50.000 | 0.00 | 0.00 | 40.13 | 2.34 |
993 | 1003 | 2.194271 | CAATCGAACTAACCGAGAGCC | 58.806 | 52.381 | 0.00 | 0.00 | 39.55 | 4.70 |
1007 | 1017 | 0.105760 | AGAGCCGGTGAGATGGAGAT | 60.106 | 55.000 | 1.90 | 0.00 | 0.00 | 2.75 |
1023 | 1033 | 1.006805 | GATGGAGACGATGGAGGCG | 60.007 | 63.158 | 0.00 | 0.00 | 0.00 | 5.52 |
1038 | 1048 | 1.550976 | GAGGCGGGAAGAAAGAGAGAA | 59.449 | 52.381 | 0.00 | 0.00 | 0.00 | 2.87 |
1102 | 1112 | 0.949105 | AAAGAAGGCGTCGAATGCGT | 60.949 | 50.000 | 0.00 | 2.87 | 38.98 | 5.24 |
1170 | 1180 | 2.267324 | GGAAGGCTGAAGCGAGCT | 59.733 | 61.111 | 5.56 | 0.00 | 43.26 | 4.09 |
1281 | 1291 | 1.000731 | GAGATGGCGAGGGAGAAGATG | 59.999 | 57.143 | 0.00 | 0.00 | 0.00 | 2.90 |
1293 | 1303 | 1.057361 | GAAGATGTTGTCGCGCGAC | 59.943 | 57.895 | 46.11 | 46.11 | 44.77 | 5.19 |
1320 | 1330 | 2.584418 | CAGATGCACGCGGAGAGG | 60.584 | 66.667 | 12.47 | 0.00 | 0.00 | 3.69 |
1335 | 1345 | 3.307480 | CGGAGAGGCTAAGGGAAAAAGAA | 60.307 | 47.826 | 0.00 | 0.00 | 0.00 | 2.52 |
1346 | 1356 | 1.617263 | GGAAAAAGAAGAGAGGCCCCC | 60.617 | 57.143 | 0.00 | 0.00 | 0.00 | 5.40 |
1481 | 1491 | 4.271049 | TGAGCACTTCTCTTTCGTTTCTTG | 59.729 | 41.667 | 0.00 | 0.00 | 42.38 | 3.02 |
1546 | 1556 | 4.985538 | AGTTCATAAGCTGGGTTTCAAGA | 58.014 | 39.130 | 0.00 | 0.00 | 0.00 | 3.02 |
1653 | 1665 | 4.378774 | TGTTGATTTGTTCCTGCCAATTG | 58.621 | 39.130 | 0.00 | 0.00 | 0.00 | 2.32 |
1692 | 1705 | 2.236893 | TGAATCTCCTGTACATGCAGCA | 59.763 | 45.455 | 0.00 | 0.00 | 35.28 | 4.41 |
1795 | 1808 | 1.349688 | AGGTCACGGAAATAACTGGCA | 59.650 | 47.619 | 0.00 | 0.00 | 0.00 | 4.92 |
1863 | 1876 | 2.476619 | CGACCTGGATCATAATCGCAAC | 59.523 | 50.000 | 0.00 | 0.00 | 32.24 | 4.17 |
2028 | 2041 | 2.380084 | AACCGCAGAACACATATCGT | 57.620 | 45.000 | 0.00 | 0.00 | 0.00 | 3.73 |
2154 | 2175 | 3.202829 | ACGGGAAAGTACAACACACAT | 57.797 | 42.857 | 0.00 | 0.00 | 0.00 | 3.21 |
2306 | 2329 | 7.925993 | TGTATGTTGACTTAAGTTGGTTCTTG | 58.074 | 34.615 | 10.02 | 0.00 | 0.00 | 3.02 |
2412 | 2436 | 4.043596 | AGATTGGGTCTCATTCTAAGGCT | 58.956 | 43.478 | 0.00 | 0.00 | 35.16 | 4.58 |
2415 | 2439 | 1.475930 | GGGTCTCATTCTAAGGCTGGC | 60.476 | 57.143 | 0.00 | 0.00 | 0.00 | 4.85 |
2426 | 2450 | 3.474570 | GGCTGGCGAGACCCATCT | 61.475 | 66.667 | 0.00 | 0.00 | 37.83 | 2.90 |
2568 | 2592 | 8.816894 | CCTTAAGAATCATAGGCCTTCTACATA | 58.183 | 37.037 | 12.58 | 0.00 | 0.00 | 2.29 |
2729 | 2753 | 5.761003 | TGACTTGCATGTAGTGTTTTCATG | 58.239 | 37.500 | 5.05 | 0.00 | 40.98 | 3.07 |
2979 | 3004 | 1.304630 | TTCGATCGTGGGGAGGTCA | 60.305 | 57.895 | 15.94 | 0.00 | 0.00 | 4.02 |
2983 | 3008 | 1.411246 | CGATCGTGGGGAGGTCAATTA | 59.589 | 52.381 | 7.03 | 0.00 | 0.00 | 1.40 |
3028 | 3053 | 5.922544 | AGCTCAAATGTTTGCATTGAGTAAC | 59.077 | 36.000 | 21.86 | 8.83 | 43.89 | 2.50 |
3033 | 3058 | 8.575589 | TCAAATGTTTGCATTGAGTAACTACAT | 58.424 | 29.630 | 0.66 | 0.00 | 43.89 | 2.29 |
3102 | 3127 | 6.869695 | TCTGTGTTACTAAGAGTGTGTTTGA | 58.130 | 36.000 | 0.00 | 0.00 | 0.00 | 2.69 |
3112 | 3137 | 2.100584 | GAGTGTGTTTGATTTGTGCCCA | 59.899 | 45.455 | 0.00 | 0.00 | 0.00 | 5.36 |
3315 | 4693 | 8.690840 | GTGTTTAGTGTGATTGCAATTAAGTTC | 58.309 | 33.333 | 14.33 | 0.49 | 0.00 | 3.01 |
3417 | 4799 | 2.096335 | CACACTGCGCATCACATATGTT | 59.904 | 45.455 | 12.24 | 0.00 | 0.00 | 2.71 |
3430 | 4812 | 7.862372 | GCATCACATATGTTCGTGGAAATAATT | 59.138 | 33.333 | 5.37 | 0.00 | 33.83 | 1.40 |
3494 | 4876 | 6.756221 | AGTATAGTATTTTGATCCACGGTCC | 58.244 | 40.000 | 0.00 | 0.00 | 0.00 | 4.46 |
3587 | 4972 | 0.251922 | TGGTTACCGGCCTCTACACT | 60.252 | 55.000 | 0.00 | 0.00 | 0.00 | 3.55 |
3691 | 5076 | 4.837972 | TGGATAATCACCGAACACAATGA | 58.162 | 39.130 | 0.00 | 0.00 | 0.00 | 2.57 |
3749 | 5134 | 1.593265 | CATTTTCTGCACCCCTGGC | 59.407 | 57.895 | 0.00 | 0.00 | 0.00 | 4.85 |
3751 | 5136 | 2.713531 | ATTTTCTGCACCCCTGGCGT | 62.714 | 55.000 | 0.00 | 0.00 | 0.00 | 5.68 |
3830 | 5215 | 1.243342 | TTTGGCACCGATCCAAGCAG | 61.243 | 55.000 | 0.00 | 0.00 | 43.67 | 4.24 |
3905 | 5290 | 1.271543 | ACCAAACGTACCCTAAAGCCC | 60.272 | 52.381 | 0.00 | 0.00 | 0.00 | 5.19 |
3940 | 5325 | 1.945394 | CTGCCAGCACCTAACATCATC | 59.055 | 52.381 | 0.00 | 0.00 | 0.00 | 2.92 |
3960 | 5345 | 3.966979 | TCCATGGTATGCACTTCACATT | 58.033 | 40.909 | 12.58 | 0.00 | 0.00 | 2.71 |
3966 | 5351 | 6.682423 | TGGTATGCACTTCACATTGATAAG | 57.318 | 37.500 | 0.00 | 0.00 | 0.00 | 1.73 |
4073 | 5458 | 6.469139 | TTAAATATTCTTGTCGACGCAACA | 57.531 | 33.333 | 11.62 | 0.00 | 0.00 | 3.33 |
4145 | 5530 | 2.178912 | TCCACCCATTTCAGTTCGAC | 57.821 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
4163 | 5548 | 7.595502 | CAGTTCGACTCATTGTAGTTAAGTTCT | 59.404 | 37.037 | 0.00 | 0.00 | 0.00 | 3.01 |
4179 | 5564 | 7.760340 | AGTTAAGTTCTACTTGATGAACGGATC | 59.240 | 37.037 | 2.45 | 0.00 | 44.95 | 3.36 |
4307 | 5692 | 4.447138 | ACATTTGGTTCTTACAGGTCCA | 57.553 | 40.909 | 0.00 | 0.00 | 0.00 | 4.02 |
4429 | 5814 | 0.109153 | ATCAGCCGCTGCAATATCCA | 59.891 | 50.000 | 15.98 | 0.00 | 41.13 | 3.41 |
4623 | 6008 | 2.582052 | GTGTTCCCCACATGAAAGTCA | 58.418 | 47.619 | 0.00 | 0.00 | 43.92 | 3.41 |
4718 | 6122 | 1.009675 | CTCGTGGTTTGTGCTGTGC | 60.010 | 57.895 | 0.00 | 0.00 | 0.00 | 4.57 |
4732 | 6136 | 3.044305 | GTGCTGTCTCGTGGTGGC | 61.044 | 66.667 | 0.00 | 0.00 | 0.00 | 5.01 |
4741 | 6145 | 2.738521 | CGTGGTGGCGAGAAGGTG | 60.739 | 66.667 | 0.00 | 0.00 | 0.00 | 4.00 |
4887 | 6291 | 3.497262 | CGTGGTTTTTCTCTACCTTCCAC | 59.503 | 47.826 | 0.00 | 0.00 | 40.13 | 4.02 |
4889 | 6293 | 3.460340 | TGGTTTTTCTCTACCTTCCACCA | 59.540 | 43.478 | 0.00 | 0.00 | 35.41 | 4.17 |
4938 | 6374 | 4.474651 | TCATCCCATGGATCTTAACAGTGT | 59.525 | 41.667 | 15.22 | 0.00 | 40.98 | 3.55 |
5001 | 6441 | 4.441356 | GCTTAGAGCAACTCTAGCAGATGT | 60.441 | 45.833 | 15.23 | 0.00 | 42.92 | 3.06 |
5004 | 6444 | 3.513119 | AGAGCAACTCTAGCAGATGTTGA | 59.487 | 43.478 | 19.64 | 0.00 | 39.28 | 3.18 |
5039 | 6479 | 1.111277 | AAAACCAGTTTGCGGCTCTT | 58.889 | 45.000 | 0.00 | 0.00 | 32.36 | 2.85 |
5044 | 6484 | 1.363744 | CAGTTTGCGGCTCTTCCTAG | 58.636 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
5048 | 6488 | 0.108804 | TTGCGGCTCTTCCTAGAACG | 60.109 | 55.000 | 0.00 | 0.00 | 35.28 | 3.95 |
5074 | 6514 | 1.400846 | GCGGTATCACGAGACTTCAGA | 59.599 | 52.381 | 0.00 | 0.00 | 35.47 | 3.27 |
5076 | 6516 | 2.418976 | CGGTATCACGAGACTTCAGACA | 59.581 | 50.000 | 0.00 | 0.00 | 35.47 | 3.41 |
5080 | 6520 | 5.163602 | GGTATCACGAGACTTCAGACAGAAT | 60.164 | 44.000 | 0.00 | 0.00 | 35.25 | 2.40 |
5081 | 6521 | 4.855715 | TCACGAGACTTCAGACAGAATT | 57.144 | 40.909 | 0.00 | 0.00 | 35.25 | 2.17 |
5143 | 6583 | 2.253758 | CGGCATATGTTCCGCCTGG | 61.254 | 63.158 | 8.56 | 0.00 | 43.95 | 4.45 |
5153 | 6593 | 3.941188 | CCGCCTGGTCCCGCATAT | 61.941 | 66.667 | 0.00 | 0.00 | 0.00 | 1.78 |
5154 | 6594 | 2.357517 | CGCCTGGTCCCGCATATC | 60.358 | 66.667 | 0.00 | 0.00 | 0.00 | 1.63 |
5155 | 6595 | 2.357517 | GCCTGGTCCCGCATATCG | 60.358 | 66.667 | 0.00 | 0.00 | 38.08 | 2.92 |
5157 | 6597 | 2.421314 | CTGGTCCCGCATATCGCA | 59.579 | 61.111 | 0.00 | 0.00 | 42.60 | 5.10 |
5158 | 6598 | 1.227527 | CTGGTCCCGCATATCGCAA | 60.228 | 57.895 | 0.00 | 0.00 | 42.60 | 4.85 |
5159 | 6599 | 0.813610 | CTGGTCCCGCATATCGCAAA | 60.814 | 55.000 | 0.00 | 0.00 | 42.60 | 3.68 |
5161 | 6601 | 0.517316 | GGTCCCGCATATCGCAAATC | 59.483 | 55.000 | 0.00 | 0.00 | 42.60 | 2.17 |
5162 | 6602 | 1.512926 | GTCCCGCATATCGCAAATCT | 58.487 | 50.000 | 0.00 | 0.00 | 42.60 | 2.40 |
5189 | 6668 | 9.237846 | GTTTTAGTTAGATAGGCAAAATCATGC | 57.762 | 33.333 | 0.00 | 0.00 | 45.67 | 4.06 |
5202 | 6681 | 7.017055 | GGCAAAATCATGCTTTTGAACAATAC | 58.983 | 34.615 | 29.57 | 14.80 | 44.97 | 1.89 |
5553 | 7056 | 1.817099 | GGAATCGCCTGCCTGACTG | 60.817 | 63.158 | 0.00 | 0.00 | 0.00 | 3.51 |
5554 | 7057 | 1.219124 | GAATCGCCTGCCTGACTGA | 59.781 | 57.895 | 0.00 | 0.00 | 0.00 | 3.41 |
5555 | 7058 | 0.809241 | GAATCGCCTGCCTGACTGAG | 60.809 | 60.000 | 0.00 | 0.00 | 0.00 | 3.35 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
23 | 24 | 2.485122 | CCGCTTCCAAACATCCGC | 59.515 | 61.111 | 0.00 | 0.00 | 0.00 | 5.54 |
56 | 57 | 1.141053 | GGCGACAACTTCCCCTATGAT | 59.859 | 52.381 | 0.00 | 0.00 | 0.00 | 2.45 |
62 | 63 | 2.434359 | CTCGGCGACAACTTCCCC | 60.434 | 66.667 | 4.99 | 0.00 | 0.00 | 4.81 |
65 | 66 | 0.599204 | TTGTCCTCGGCGACAACTTC | 60.599 | 55.000 | 4.99 | 0.00 | 45.49 | 3.01 |
120 | 121 | 4.858850 | ACATCTGCATCATTACCCTGAAA | 58.141 | 39.130 | 0.00 | 0.00 | 0.00 | 2.69 |
128 | 129 | 4.126437 | CCGTTGGTACATCTGCATCATTA | 58.874 | 43.478 | 0.00 | 0.00 | 39.30 | 1.90 |
137 | 138 | 1.515954 | CTCCGCCGTTGGTACATCT | 59.484 | 57.895 | 0.00 | 0.00 | 39.30 | 2.90 |
140 | 141 | 2.874664 | AAGCTCCGCCGTTGGTACA | 61.875 | 57.895 | 0.00 | 0.00 | 0.00 | 2.90 |
161 | 162 | 6.013379 | ACCATATATACCATGCTGCTACAACT | 60.013 | 38.462 | 0.00 | 0.00 | 0.00 | 3.16 |
215 | 216 | 4.862371 | TCCGGCCTTTGGACTTTTATATT | 58.138 | 39.130 | 0.00 | 0.00 | 0.00 | 1.28 |
216 | 217 | 4.513406 | TCCGGCCTTTGGACTTTTATAT | 57.487 | 40.909 | 0.00 | 0.00 | 0.00 | 0.86 |
217 | 218 | 4.304048 | TTCCGGCCTTTGGACTTTTATA | 57.696 | 40.909 | 0.00 | 0.00 | 34.56 | 0.98 |
218 | 219 | 2.891191 | TCCGGCCTTTGGACTTTTAT | 57.109 | 45.000 | 0.00 | 0.00 | 0.00 | 1.40 |
219 | 220 | 2.660670 | TTCCGGCCTTTGGACTTTTA | 57.339 | 45.000 | 0.00 | 0.00 | 34.56 | 1.52 |
350 | 351 | 5.352569 | AGGAAGCATCAACGTTTATCTTCAG | 59.647 | 40.000 | 22.09 | 4.97 | 32.47 | 3.02 |
361 | 362 | 4.631377 | TCATACTGAAAGGAAGCATCAACG | 59.369 | 41.667 | 0.00 | 0.00 | 39.30 | 4.10 |
393 | 394 | 2.031919 | CGGCACCACAAGCACCTA | 59.968 | 61.111 | 0.00 | 0.00 | 0.00 | 3.08 |
418 | 419 | 4.417426 | AATAAAATCATCCCGGTCGTCT | 57.583 | 40.909 | 0.00 | 0.00 | 0.00 | 4.18 |
440 | 442 | 1.829533 | CACCCCAACTTGCTGCAGT | 60.830 | 57.895 | 16.64 | 0.48 | 0.00 | 4.40 |
455 | 457 | 2.554032 | CTCCACTGATGTTTGGAACACC | 59.446 | 50.000 | 0.00 | 0.00 | 45.50 | 4.16 |
456 | 458 | 3.214328 | ACTCCACTGATGTTTGGAACAC | 58.786 | 45.455 | 0.00 | 0.00 | 45.50 | 3.32 |
483 | 485 | 1.280133 | TGATGGCAGTTAGCTCAGCTT | 59.720 | 47.619 | 3.31 | 0.00 | 44.79 | 3.74 |
512 | 515 | 4.586421 | TCCAATGTGAGTTGCCAAATACAA | 59.414 | 37.500 | 0.00 | 0.00 | 0.00 | 2.41 |
517 | 520 | 2.288948 | GCATCCAATGTGAGTTGCCAAA | 60.289 | 45.455 | 0.00 | 0.00 | 0.00 | 3.28 |
548 | 551 | 7.273381 | CGCGAAGGAACATTCTAATTCAATTTT | 59.727 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
562 | 565 | 1.375523 | GTCCACCGCGAAGGAACAT | 60.376 | 57.895 | 18.88 | 0.00 | 45.00 | 2.71 |
590 | 593 | 7.235079 | TCCGGGCCTAAATAATCATCAATTTA | 58.765 | 34.615 | 0.84 | 0.00 | 0.00 | 1.40 |
593 | 596 | 5.255397 | TCCGGGCCTAAATAATCATCAAT | 57.745 | 39.130 | 0.84 | 0.00 | 0.00 | 2.57 |
675 | 685 | 4.345257 | GCCACCTGATTGACCTCTCTATAA | 59.655 | 45.833 | 0.00 | 0.00 | 0.00 | 0.98 |
686 | 696 | 3.657398 | ATTCATCTGCCACCTGATTGA | 57.343 | 42.857 | 0.00 | 0.00 | 0.00 | 2.57 |
748 | 758 | 8.420222 | TCTCATCATCTCAAAAACTAGAGGATC | 58.580 | 37.037 | 0.00 | 0.00 | 40.29 | 3.36 |
749 | 759 | 8.316497 | TCTCATCATCTCAAAAACTAGAGGAT | 57.684 | 34.615 | 0.00 | 0.00 | 42.31 | 3.24 |
750 | 760 | 7.724490 | TCTCATCATCTCAAAAACTAGAGGA | 57.276 | 36.000 | 0.00 | 0.00 | 37.00 | 3.71 |
751 | 761 | 7.656948 | GGATCTCATCATCTCAAAAACTAGAGG | 59.343 | 40.741 | 0.00 | 0.00 | 32.76 | 3.69 |
752 | 762 | 7.656948 | GGGATCTCATCATCTCAAAAACTAGAG | 59.343 | 40.741 | 0.00 | 0.00 | 0.00 | 2.43 |
753 | 763 | 7.346698 | AGGGATCTCATCATCTCAAAAACTAGA | 59.653 | 37.037 | 0.00 | 0.00 | 0.00 | 2.43 |
754 | 764 | 7.441760 | CAGGGATCTCATCATCTCAAAAACTAG | 59.558 | 40.741 | 0.00 | 0.00 | 0.00 | 2.57 |
755 | 765 | 7.126268 | TCAGGGATCTCATCATCTCAAAAACTA | 59.874 | 37.037 | 0.00 | 0.00 | 0.00 | 2.24 |
756 | 766 | 6.069789 | TCAGGGATCTCATCATCTCAAAAACT | 60.070 | 38.462 | 0.00 | 0.00 | 0.00 | 2.66 |
757 | 767 | 6.118170 | TCAGGGATCTCATCATCTCAAAAAC | 58.882 | 40.000 | 0.00 | 0.00 | 0.00 | 2.43 |
758 | 768 | 6.317663 | TCAGGGATCTCATCATCTCAAAAA | 57.682 | 37.500 | 0.00 | 0.00 | 0.00 | 1.94 |
759 | 769 | 5.963214 | TCAGGGATCTCATCATCTCAAAA | 57.037 | 39.130 | 0.00 | 0.00 | 0.00 | 2.44 |
760 | 770 | 6.511017 | AATCAGGGATCTCATCATCTCAAA | 57.489 | 37.500 | 0.00 | 0.00 | 0.00 | 2.69 |
761 | 771 | 6.511017 | AAATCAGGGATCTCATCATCTCAA | 57.489 | 37.500 | 0.00 | 0.00 | 0.00 | 3.02 |
762 | 772 | 6.511017 | AAAATCAGGGATCTCATCATCTCA | 57.489 | 37.500 | 0.00 | 0.00 | 0.00 | 3.27 |
763 | 773 | 9.517868 | AAATAAAATCAGGGATCTCATCATCTC | 57.482 | 33.333 | 0.00 | 0.00 | 0.00 | 2.75 |
764 | 774 | 9.517868 | GAAATAAAATCAGGGATCTCATCATCT | 57.482 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
860 | 870 | 4.025480 | CGGTAGTGTTTTTAAGAGCAACGT | 60.025 | 41.667 | 0.00 | 0.00 | 0.00 | 3.99 |
861 | 871 | 4.451557 | CGGTAGTGTTTTTAAGAGCAACG | 58.548 | 43.478 | 0.00 | 0.00 | 0.00 | 4.10 |
862 | 872 | 4.512571 | TCCGGTAGTGTTTTTAAGAGCAAC | 59.487 | 41.667 | 0.00 | 0.00 | 0.00 | 4.17 |
863 | 873 | 4.512571 | GTCCGGTAGTGTTTTTAAGAGCAA | 59.487 | 41.667 | 0.00 | 0.00 | 0.00 | 3.91 |
864 | 874 | 4.060205 | GTCCGGTAGTGTTTTTAAGAGCA | 58.940 | 43.478 | 0.00 | 0.00 | 0.00 | 4.26 |
865 | 875 | 3.122445 | CGTCCGGTAGTGTTTTTAAGAGC | 59.878 | 47.826 | 0.00 | 0.00 | 0.00 | 4.09 |
866 | 876 | 3.676646 | CCGTCCGGTAGTGTTTTTAAGAG | 59.323 | 47.826 | 0.00 | 0.00 | 0.00 | 2.85 |
867 | 877 | 3.320541 | TCCGTCCGGTAGTGTTTTTAAGA | 59.679 | 43.478 | 0.00 | 0.00 | 36.47 | 2.10 |
868 | 878 | 3.652274 | TCCGTCCGGTAGTGTTTTTAAG | 58.348 | 45.455 | 0.00 | 0.00 | 36.47 | 1.85 |
869 | 879 | 3.742433 | TCCGTCCGGTAGTGTTTTTAA | 57.258 | 42.857 | 0.00 | 0.00 | 36.47 | 1.52 |
870 | 880 | 3.389221 | GTTCCGTCCGGTAGTGTTTTTA | 58.611 | 45.455 | 0.00 | 0.00 | 36.47 | 1.52 |
871 | 881 | 2.212652 | GTTCCGTCCGGTAGTGTTTTT | 58.787 | 47.619 | 0.00 | 0.00 | 36.47 | 1.94 |
872 | 882 | 1.541015 | GGTTCCGTCCGGTAGTGTTTT | 60.541 | 52.381 | 0.00 | 0.00 | 36.47 | 2.43 |
873 | 883 | 0.033920 | GGTTCCGTCCGGTAGTGTTT | 59.966 | 55.000 | 0.00 | 0.00 | 36.47 | 2.83 |
874 | 884 | 1.667722 | GGTTCCGTCCGGTAGTGTT | 59.332 | 57.895 | 0.00 | 0.00 | 36.47 | 3.32 |
875 | 885 | 2.278330 | GGGTTCCGTCCGGTAGTGT | 61.278 | 63.158 | 0.00 | 0.00 | 36.47 | 3.55 |
876 | 886 | 2.575461 | GGGTTCCGTCCGGTAGTG | 59.425 | 66.667 | 0.00 | 0.00 | 36.47 | 2.74 |
877 | 887 | 3.064324 | CGGGTTCCGTCCGGTAGT | 61.064 | 66.667 | 0.00 | 0.00 | 42.73 | 2.73 |
887 | 897 | 2.044946 | AATCAGCCAGCGGGTTCC | 60.045 | 61.111 | 4.36 | 0.00 | 36.17 | 3.62 |
888 | 898 | 0.178068 | TAGAATCAGCCAGCGGGTTC | 59.822 | 55.000 | 7.58 | 7.58 | 36.17 | 3.62 |
889 | 899 | 0.179000 | CTAGAATCAGCCAGCGGGTT | 59.821 | 55.000 | 4.36 | 0.00 | 36.17 | 4.11 |
890 | 900 | 1.690219 | CCTAGAATCAGCCAGCGGGT | 61.690 | 60.000 | 4.36 | 0.00 | 36.17 | 5.28 |
891 | 901 | 1.070445 | CCTAGAATCAGCCAGCGGG | 59.930 | 63.158 | 0.00 | 0.00 | 37.18 | 6.13 |
892 | 902 | 0.179000 | AACCTAGAATCAGCCAGCGG | 59.821 | 55.000 | 0.00 | 0.00 | 0.00 | 5.52 |
893 | 903 | 2.029838 | AAACCTAGAATCAGCCAGCG | 57.970 | 50.000 | 0.00 | 0.00 | 0.00 | 5.18 |
894 | 904 | 3.615155 | AGAAAACCTAGAATCAGCCAGC | 58.385 | 45.455 | 0.00 | 0.00 | 0.00 | 4.85 |
895 | 905 | 6.881602 | AGTAAAGAAAACCTAGAATCAGCCAG | 59.118 | 38.462 | 0.00 | 0.00 | 0.00 | 4.85 |
896 | 906 | 6.779860 | AGTAAAGAAAACCTAGAATCAGCCA | 58.220 | 36.000 | 0.00 | 0.00 | 0.00 | 4.75 |
897 | 907 | 7.106890 | AGAGTAAAGAAAACCTAGAATCAGCC | 58.893 | 38.462 | 0.00 | 0.00 | 0.00 | 4.85 |
898 | 908 | 8.554835 | AAGAGTAAAGAAAACCTAGAATCAGC | 57.445 | 34.615 | 0.00 | 0.00 | 0.00 | 4.26 |
899 | 909 | 9.157104 | GGAAGAGTAAAGAAAACCTAGAATCAG | 57.843 | 37.037 | 0.00 | 0.00 | 0.00 | 2.90 |
900 | 910 | 8.101419 | GGGAAGAGTAAAGAAAACCTAGAATCA | 58.899 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
901 | 911 | 7.553402 | GGGGAAGAGTAAAGAAAACCTAGAATC | 59.447 | 40.741 | 0.00 | 0.00 | 0.00 | 2.52 |
902 | 912 | 7.018249 | TGGGGAAGAGTAAAGAAAACCTAGAAT | 59.982 | 37.037 | 0.00 | 0.00 | 0.00 | 2.40 |
903 | 913 | 6.330778 | TGGGGAAGAGTAAAGAAAACCTAGAA | 59.669 | 38.462 | 0.00 | 0.00 | 0.00 | 2.10 |
904 | 914 | 5.847817 | TGGGGAAGAGTAAAGAAAACCTAGA | 59.152 | 40.000 | 0.00 | 0.00 | 0.00 | 2.43 |
905 | 915 | 5.938710 | GTGGGGAAGAGTAAAGAAAACCTAG | 59.061 | 44.000 | 0.00 | 0.00 | 0.00 | 3.02 |
906 | 916 | 5.221986 | GGTGGGGAAGAGTAAAGAAAACCTA | 60.222 | 44.000 | 0.00 | 0.00 | 0.00 | 3.08 |
907 | 917 | 4.447325 | GGTGGGGAAGAGTAAAGAAAACCT | 60.447 | 45.833 | 0.00 | 0.00 | 0.00 | 3.50 |
908 | 918 | 3.825014 | GGTGGGGAAGAGTAAAGAAAACC | 59.175 | 47.826 | 0.00 | 0.00 | 0.00 | 3.27 |
909 | 919 | 4.726583 | AGGTGGGGAAGAGTAAAGAAAAC | 58.273 | 43.478 | 0.00 | 0.00 | 0.00 | 2.43 |
910 | 920 | 5.382616 | GAAGGTGGGGAAGAGTAAAGAAAA | 58.617 | 41.667 | 0.00 | 0.00 | 0.00 | 2.29 |
911 | 921 | 4.504340 | CGAAGGTGGGGAAGAGTAAAGAAA | 60.504 | 45.833 | 0.00 | 0.00 | 0.00 | 2.52 |
912 | 922 | 3.007614 | CGAAGGTGGGGAAGAGTAAAGAA | 59.992 | 47.826 | 0.00 | 0.00 | 0.00 | 2.52 |
913 | 923 | 2.565834 | CGAAGGTGGGGAAGAGTAAAGA | 59.434 | 50.000 | 0.00 | 0.00 | 0.00 | 2.52 |
914 | 924 | 2.973945 | CGAAGGTGGGGAAGAGTAAAG | 58.026 | 52.381 | 0.00 | 0.00 | 0.00 | 1.85 |
930 | 940 | 2.169769 | TGCAAACCCTACTATCCCGAAG | 59.830 | 50.000 | 0.00 | 0.00 | 0.00 | 3.79 |
931 | 941 | 2.189676 | TGCAAACCCTACTATCCCGAA | 58.810 | 47.619 | 0.00 | 0.00 | 0.00 | 4.30 |
932 | 942 | 1.868713 | TGCAAACCCTACTATCCCGA | 58.131 | 50.000 | 0.00 | 0.00 | 0.00 | 5.14 |
933 | 943 | 2.930826 | ATGCAAACCCTACTATCCCG | 57.069 | 50.000 | 0.00 | 0.00 | 0.00 | 5.14 |
934 | 944 | 3.676093 | GCTATGCAAACCCTACTATCCC | 58.324 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
935 | 945 | 3.326747 | CGCTATGCAAACCCTACTATCC | 58.673 | 50.000 | 0.00 | 0.00 | 0.00 | 2.59 |
936 | 946 | 3.326747 | CCGCTATGCAAACCCTACTATC | 58.673 | 50.000 | 0.00 | 0.00 | 0.00 | 2.08 |
937 | 947 | 2.550208 | GCCGCTATGCAAACCCTACTAT | 60.550 | 50.000 | 0.00 | 0.00 | 0.00 | 2.12 |
938 | 948 | 1.202604 | GCCGCTATGCAAACCCTACTA | 60.203 | 52.381 | 0.00 | 0.00 | 0.00 | 1.82 |
939 | 949 | 0.463833 | GCCGCTATGCAAACCCTACT | 60.464 | 55.000 | 0.00 | 0.00 | 0.00 | 2.57 |
940 | 950 | 0.463833 | AGCCGCTATGCAAACCCTAC | 60.464 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
941 | 951 | 1.070134 | CTAGCCGCTATGCAAACCCTA | 59.930 | 52.381 | 0.00 | 0.00 | 0.00 | 3.53 |
942 | 952 | 0.179045 | CTAGCCGCTATGCAAACCCT | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 4.34 |
943 | 953 | 1.166531 | CCTAGCCGCTATGCAAACCC | 61.167 | 60.000 | 0.00 | 0.00 | 0.00 | 4.11 |
944 | 954 | 1.166531 | CCCTAGCCGCTATGCAAACC | 61.167 | 60.000 | 0.00 | 0.00 | 0.00 | 3.27 |
945 | 955 | 1.786049 | GCCCTAGCCGCTATGCAAAC | 61.786 | 60.000 | 14.18 | 0.00 | 0.00 | 2.93 |
946 | 956 | 1.525995 | GCCCTAGCCGCTATGCAAA | 60.526 | 57.895 | 14.18 | 0.00 | 0.00 | 3.68 |
947 | 957 | 2.111043 | GCCCTAGCCGCTATGCAA | 59.889 | 61.111 | 14.18 | 0.00 | 0.00 | 4.08 |
948 | 958 | 4.299547 | CGCCCTAGCCGCTATGCA | 62.300 | 66.667 | 17.46 | 0.00 | 34.57 | 3.96 |
949 | 959 | 3.991051 | TCGCCCTAGCCGCTATGC | 61.991 | 66.667 | 0.00 | 6.30 | 34.57 | 3.14 |
950 | 960 | 2.049063 | GTCGCCCTAGCCGCTATG | 60.049 | 66.667 | 0.00 | 0.00 | 34.57 | 2.23 |
951 | 961 | 3.671411 | CGTCGCCCTAGCCGCTAT | 61.671 | 66.667 | 0.00 | 0.00 | 34.57 | 2.97 |
956 | 966 | 4.525949 | GTTCCCGTCGCCCTAGCC | 62.526 | 72.222 | 0.00 | 0.00 | 34.57 | 3.93 |
957 | 967 | 2.588856 | ATTGTTCCCGTCGCCCTAGC | 62.589 | 60.000 | 0.00 | 0.00 | 0.00 | 3.42 |
958 | 968 | 0.529992 | GATTGTTCCCGTCGCCCTAG | 60.530 | 60.000 | 0.00 | 0.00 | 0.00 | 3.02 |
959 | 969 | 1.518774 | GATTGTTCCCGTCGCCCTA | 59.481 | 57.895 | 0.00 | 0.00 | 0.00 | 3.53 |
960 | 970 | 2.267961 | GATTGTTCCCGTCGCCCT | 59.732 | 61.111 | 0.00 | 0.00 | 0.00 | 5.19 |
961 | 971 | 3.192922 | CGATTGTTCCCGTCGCCC | 61.193 | 66.667 | 0.00 | 0.00 | 0.00 | 6.13 |
962 | 972 | 1.738830 | TTCGATTGTTCCCGTCGCC | 60.739 | 57.895 | 0.00 | 0.00 | 35.48 | 5.54 |
963 | 973 | 1.012486 | AGTTCGATTGTTCCCGTCGC | 61.012 | 55.000 | 0.00 | 0.00 | 35.48 | 5.19 |
993 | 1003 | 1.339610 | GTCTCCATCTCCATCTCACCG | 59.660 | 57.143 | 0.00 | 0.00 | 0.00 | 4.94 |
1007 | 1017 | 3.147595 | CCGCCTCCATCGTCTCCA | 61.148 | 66.667 | 0.00 | 0.00 | 0.00 | 3.86 |
1023 | 1033 | 3.256136 | TCAGACGTTCTCTCTTTCTTCCC | 59.744 | 47.826 | 0.00 | 0.00 | 0.00 | 3.97 |
1055 | 1065 | 1.095807 | CCGCTTTCTCCCCGATTTCC | 61.096 | 60.000 | 0.00 | 0.00 | 0.00 | 3.13 |
1251 | 1261 | 0.107993 | TCGCCATCTCTTCCTGCAAG | 60.108 | 55.000 | 0.00 | 0.00 | 0.00 | 4.01 |
1252 | 1262 | 0.107993 | CTCGCCATCTCTTCCTGCAA | 60.108 | 55.000 | 0.00 | 0.00 | 0.00 | 4.08 |
1320 | 1330 | 3.692101 | GCCTCTCTTCTTTTTCCCTTAGC | 59.308 | 47.826 | 0.00 | 0.00 | 0.00 | 3.09 |
1502 | 1512 | 5.520288 | ACTTTGTAGGAACATCAATCGATCG | 59.480 | 40.000 | 9.36 | 9.36 | 34.97 | 3.69 |
1599 | 1611 | 8.446273 | CAATCTACAATTGTTGTCAGGTTCTAG | 58.554 | 37.037 | 17.78 | 3.35 | 44.12 | 2.43 |
1634 | 1646 | 3.387374 | ACACAATTGGCAGGAACAAATCA | 59.613 | 39.130 | 10.83 | 0.00 | 0.00 | 2.57 |
1639 | 1651 | 2.665165 | AGAACACAATTGGCAGGAACA | 58.335 | 42.857 | 10.83 | 0.00 | 0.00 | 3.18 |
1653 | 1665 | 8.447053 | GGAGATTCAGATTCAGTAAAAGAACAC | 58.553 | 37.037 | 0.00 | 0.00 | 0.00 | 3.32 |
1692 | 1705 | 1.983119 | AACACATGGCGGGGATCGAT | 61.983 | 55.000 | 0.00 | 0.00 | 42.43 | 3.59 |
1795 | 1808 | 0.834687 | TCGAGGGGCCACTGTAAACT | 60.835 | 55.000 | 15.62 | 0.00 | 0.00 | 2.66 |
1863 | 1876 | 5.007724 | GTCCCTTGAGCGGTTAAAGATAATG | 59.992 | 44.000 | 11.31 | 0.00 | 0.00 | 1.90 |
2133 | 2146 | 3.815856 | TGTGTGTTGTACTTTCCCGTA | 57.184 | 42.857 | 0.00 | 0.00 | 0.00 | 4.02 |
2135 | 2148 | 7.548196 | AATATATGTGTGTTGTACTTTCCCG | 57.452 | 36.000 | 0.00 | 0.00 | 0.00 | 5.14 |
2218 | 2240 | 0.604578 | ACATGAACATGCTGGTTGCC | 59.395 | 50.000 | 13.71 | 0.00 | 42.39 | 4.52 |
2306 | 2329 | 3.747099 | AGACGCAAATACAGTTCATGC | 57.253 | 42.857 | 0.00 | 0.00 | 0.00 | 4.06 |
2393 | 2417 | 2.239654 | CCAGCCTTAGAATGAGACCCAA | 59.760 | 50.000 | 0.00 | 0.00 | 0.00 | 4.12 |
2394 | 2418 | 1.839994 | CCAGCCTTAGAATGAGACCCA | 59.160 | 52.381 | 0.00 | 0.00 | 0.00 | 4.51 |
2412 | 2436 | 1.612146 | TTCCAGATGGGTCTCGCCA | 60.612 | 57.895 | 0.00 | 0.00 | 39.65 | 5.69 |
2415 | 2439 | 0.176680 | CCACTTCCAGATGGGTCTCG | 59.823 | 60.000 | 0.00 | 0.00 | 38.11 | 4.04 |
2426 | 2450 | 3.072330 | TGCTTACACTTGATCCACTTCCA | 59.928 | 43.478 | 0.00 | 0.00 | 0.00 | 3.53 |
2568 | 2592 | 1.271001 | TGTCTGCTAATGCACTGTGCT | 60.271 | 47.619 | 30.43 | 16.01 | 45.31 | 4.40 |
2729 | 2753 | 1.438651 | TAACGTGCAGGCATTCAGAC | 58.561 | 50.000 | 6.26 | 0.00 | 0.00 | 3.51 |
2919 | 2944 | 1.681780 | GCCATCTCCCCACGATTTTCA | 60.682 | 52.381 | 0.00 | 0.00 | 0.00 | 2.69 |
2979 | 3004 | 2.308570 | TGTGATGGTGAGCCTGGTAATT | 59.691 | 45.455 | 0.00 | 0.00 | 35.27 | 1.40 |
2983 | 3008 | 0.250901 | GTTGTGATGGTGAGCCTGGT | 60.251 | 55.000 | 0.00 | 0.00 | 35.27 | 4.00 |
3092 | 3117 | 2.106566 | TGGGCACAAATCAAACACACT | 58.893 | 42.857 | 0.00 | 0.00 | 0.00 | 3.55 |
3268 | 4645 | 7.016153 | ACACTGATCAATCCTAGTTACCAAA | 57.984 | 36.000 | 0.00 | 0.00 | 0.00 | 3.28 |
3315 | 4693 | 7.761038 | ACAGGTGTCCCTTCTTTTTAATTAG | 57.239 | 36.000 | 0.00 | 0.00 | 39.89 | 1.73 |
3417 | 4799 | 5.989477 | AGGATGTCAGAATTATTTCCACGA | 58.011 | 37.500 | 0.00 | 0.00 | 31.84 | 4.35 |
3430 | 4812 | 7.232737 | TGTCTTAGTTCAGTAAAGGATGTCAGA | 59.767 | 37.037 | 0.00 | 0.00 | 0.00 | 3.27 |
3494 | 4876 | 6.215845 | CCAAGTTATCCCAGTTTCAACAAAG | 58.784 | 40.000 | 0.00 | 0.00 | 0.00 | 2.77 |
3691 | 5076 | 0.319813 | GTTGCCCTCGCATGCTTTTT | 60.320 | 50.000 | 17.13 | 0.00 | 46.67 | 1.94 |
3830 | 5215 | 2.733956 | TGGCCCATAAGATTTGGTCAC | 58.266 | 47.619 | 0.00 | 0.00 | 31.99 | 3.67 |
3905 | 5290 | 4.020751 | TGCTGGCAGAGAATAATAGCCTAG | 60.021 | 45.833 | 20.86 | 0.00 | 45.42 | 3.02 |
3940 | 5325 | 3.695556 | TCAATGTGAAGTGCATACCATGG | 59.304 | 43.478 | 11.19 | 11.19 | 0.00 | 3.66 |
3960 | 5345 | 7.440198 | TCAAAACATCACAAAATGGCTTATCA | 58.560 | 30.769 | 0.00 | 0.00 | 0.00 | 2.15 |
3966 | 5351 | 8.505625 | ACAATATTCAAAACATCACAAAATGGC | 58.494 | 29.630 | 0.00 | 0.00 | 0.00 | 4.40 |
4073 | 5458 | 7.171337 | ACAATTTGAGAAGCGCAAATAAATTGT | 59.829 | 29.630 | 28.94 | 28.94 | 45.12 | 2.71 |
4163 | 5548 | 7.962964 | GGATTATTGATCCGTTCATCAAGTA | 57.037 | 36.000 | 7.49 | 0.64 | 44.21 | 2.24 |
4197 | 5582 | 9.109393 | GGAACACATCTATTGAAGTAATAAGCA | 57.891 | 33.333 | 0.00 | 0.00 | 31.12 | 3.91 |
4429 | 5814 | 1.267806 | GCGATTTGGATGGCGATTGAT | 59.732 | 47.619 | 0.00 | 0.00 | 0.00 | 2.57 |
4471 | 5856 | 1.802960 | CCAGTGTGCTGAGCTTACTTG | 59.197 | 52.381 | 5.83 | 2.36 | 45.28 | 3.16 |
4623 | 6008 | 1.886313 | CGCCTGAATCGAGCAGCAT | 60.886 | 57.895 | 11.47 | 0.00 | 32.06 | 3.79 |
4732 | 6136 | 2.266055 | GCCTCCACCACCTTCTCG | 59.734 | 66.667 | 0.00 | 0.00 | 0.00 | 4.04 |
4741 | 6145 | 2.574399 | GACGTCTCAGCCTCCACC | 59.426 | 66.667 | 8.70 | 0.00 | 0.00 | 4.61 |
4887 | 6291 | 1.065854 | ACTAGCTAGCAACAGCCTTGG | 60.066 | 52.381 | 20.91 | 0.00 | 42.84 | 3.61 |
4889 | 6293 | 1.065854 | CCACTAGCTAGCAACAGCCTT | 60.066 | 52.381 | 20.91 | 0.00 | 42.84 | 4.35 |
5039 | 6479 | 0.899720 | ACCGCAAATCCGTTCTAGGA | 59.100 | 50.000 | 0.00 | 0.00 | 45.54 | 2.94 |
5044 | 6484 | 1.005347 | CGTGATACCGCAAATCCGTTC | 60.005 | 52.381 | 0.00 | 0.00 | 0.00 | 3.95 |
5048 | 6488 | 1.859080 | GTCTCGTGATACCGCAAATCC | 59.141 | 52.381 | 0.00 | 0.00 | 0.00 | 3.01 |
5074 | 6514 | 1.067635 | GGTTTGCGGCATCAATTCTGT | 60.068 | 47.619 | 2.28 | 0.00 | 0.00 | 3.41 |
5076 | 6516 | 1.203052 | CAGGTTTGCGGCATCAATTCT | 59.797 | 47.619 | 2.28 | 0.00 | 0.00 | 2.40 |
5080 | 6520 | 0.878416 | GTACAGGTTTGCGGCATCAA | 59.122 | 50.000 | 2.28 | 0.00 | 0.00 | 2.57 |
5081 | 6521 | 0.036164 | AGTACAGGTTTGCGGCATCA | 59.964 | 50.000 | 2.28 | 0.00 | 0.00 | 3.07 |
5152 | 6592 | 9.046296 | CCTATCTAACTAAAACAGATTTGCGAT | 57.954 | 33.333 | 0.00 | 0.00 | 31.60 | 4.58 |
5153 | 6593 | 7.011109 | GCCTATCTAACTAAAACAGATTTGCGA | 59.989 | 37.037 | 0.00 | 0.00 | 31.60 | 5.10 |
5154 | 6594 | 7.126398 | GCCTATCTAACTAAAACAGATTTGCG | 58.874 | 38.462 | 0.00 | 0.00 | 31.60 | 4.85 |
5155 | 6595 | 7.985476 | TGCCTATCTAACTAAAACAGATTTGC | 58.015 | 34.615 | 0.00 | 0.00 | 31.60 | 3.68 |
5258 | 6737 | 9.748708 | TTGCAATTAAGAGGATTATTGTATTGC | 57.251 | 29.630 | 0.00 | 0.00 | 43.24 | 3.56 |
5393 | 6873 | 1.737793 | GTTCCTGCCAGGTTTATGTCG | 59.262 | 52.381 | 11.27 | 0.00 | 36.53 | 4.35 |
5553 | 7056 | 1.330655 | TTCGTGATCCAGCCCTCCTC | 61.331 | 60.000 | 0.00 | 0.00 | 0.00 | 3.71 |
5554 | 7057 | 1.306141 | TTCGTGATCCAGCCCTCCT | 60.306 | 57.895 | 0.00 | 0.00 | 0.00 | 3.69 |
5555 | 7058 | 1.153349 | GTTCGTGATCCAGCCCTCC | 60.153 | 63.158 | 0.00 | 0.00 | 0.00 | 4.30 |
5586 | 7089 | 1.531748 | GGATCGATTTGGGCCCTGA | 59.468 | 57.895 | 25.70 | 12.16 | 0.00 | 3.86 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.