Multiple sequence alignment - TraesCS5A01G150800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G150800 chr5A 100.000 5393 0 0 1 5393 328661791 328656399 0.000000e+00 9960.0
1 TraesCS5A01G150800 chr5A 83.942 274 35 9 4861 5130 666596047 666595779 2.490000e-63 254.0
2 TraesCS5A01G150800 chr5B 94.180 2629 96 22 2151 4733 277267987 277265370 0.000000e+00 3954.0
3 TraesCS5A01G150800 chr5B 92.595 1715 98 13 336 2028 277269771 277268064 0.000000e+00 2436.0
4 TraesCS5A01G150800 chr5B 83.303 557 80 9 4844 5393 277263086 277262536 8.060000e-138 501.0
5 TraesCS5A01G150800 chr5B 81.919 271 46 3 4862 5130 401005554 401005285 5.430000e-55 226.0
6 TraesCS5A01G150800 chr5B 91.892 37 3 0 257 293 684097224 684097260 1.000000e-02 52.8
7 TraesCS5A01G150800 chr5D 94.202 2087 80 17 2151 4218 244209031 244206967 0.000000e+00 3145.0
8 TraesCS5A01G150800 chr5D 93.419 1717 100 7 319 2029 244210767 244209058 0.000000e+00 2532.0
9 TraesCS5A01G150800 chr5D 91.058 548 21 8 4251 4783 244206965 244206431 0.000000e+00 715.0
10 TraesCS5A01G150800 chr5D 94.570 221 7 1 1345 1565 457642296 457642081 2.410000e-88 337.0
11 TraesCS5A01G150800 chr5D 94.949 99 4 1 162 260 244210877 244210780 2.600000e-33 154.0
12 TraesCS5A01G150800 chr2B 91.423 1026 51 18 2155 3148 152135001 152133981 0.000000e+00 1373.0
13 TraesCS5A01G150800 chr2B 93.392 908 56 4 1099 2005 152135944 152135040 0.000000e+00 1341.0
14 TraesCS5A01G150800 chr2B 97.059 34 1 0 260 293 358639705 358639738 2.100000e-04 58.4
15 TraesCS5A01G150800 chr7B 91.326 1026 50 20 2155 3148 22544693 22543675 0.000000e+00 1365.0
16 TraesCS5A01G150800 chr7B 93.770 915 44 5 1099 2005 22545642 22544733 0.000000e+00 1362.0
17 TraesCS5A01G150800 chr4B 90.865 1029 57 18 2151 3148 13275135 13276157 0.000000e+00 1345.0
18 TraesCS5A01G150800 chr4B 95.088 509 21 2 1498 2005 13274592 13275097 0.000000e+00 798.0
19 TraesCS5A01G150800 chr7A 84.155 284 39 6 4851 5130 287473460 287473741 2.480000e-68 270.0
20 TraesCS5A01G150800 chr6D 84.133 271 37 5 4864 5130 9795017 9795285 1.930000e-64 257.0
21 TraesCS5A01G150800 chr6D 84.015 269 38 5 4864 5129 289050448 289050714 2.490000e-63 254.0
22 TraesCS5A01G150800 chr1A 82.877 292 41 8 4844 5130 247347457 247347744 2.490000e-63 254.0
23 TraesCS5A01G150800 chr1A 82.117 274 44 5 4860 5130 398118120 398117849 4.200000e-56 230.0
24 TraesCS5A01G150800 chr6A 83.883 273 34 9 4864 5130 601141794 601141526 8.970000e-63 252.0
25 TraesCS5A01G150800 chr2D 97.059 34 1 0 260 293 14815731 14815764 2.100000e-04 58.4
26 TraesCS5A01G150800 chr2A 97.059 34 1 0 260 293 189018932 189018899 2.100000e-04 58.4
27 TraesCS5A01G150800 chr1B 97.059 34 1 0 260 293 560255366 560255399 2.100000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G150800 chr5A 328656399 328661791 5392 True 9960.0 9960 100.0000 1 5393 1 chr5A.!!$R1 5392
1 TraesCS5A01G150800 chr5B 277262536 277269771 7235 True 2297.0 3954 90.0260 336 5393 3 chr5B.!!$R2 5057
2 TraesCS5A01G150800 chr5D 244206431 244210877 4446 True 1636.5 3145 93.4070 162 4783 4 chr5D.!!$R2 4621
3 TraesCS5A01G150800 chr2B 152133981 152135944 1963 True 1357.0 1373 92.4075 1099 3148 2 chr2B.!!$R1 2049
4 TraesCS5A01G150800 chr7B 22543675 22545642 1967 True 1363.5 1365 92.5480 1099 3148 2 chr7B.!!$R1 2049
5 TraesCS5A01G150800 chr4B 13274592 13276157 1565 False 1071.5 1345 92.9765 1498 3148 2 chr4B.!!$F1 1650

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
109 110 0.036010 ATACACAGCTTGCTTCCGCT 60.036 50.000 0.00 0.00 36.83 5.52 F
111 112 0.250295 ACACAGCTTGCTTCCGCTAA 60.250 50.000 0.00 0.00 34.58 3.09 F
464 467 0.392998 CTCCCCATTTCTCACCACCG 60.393 60.000 0.00 0.00 0.00 4.94 F
516 519 0.606096 CCCACACGTCACCATGACTA 59.394 55.000 7.33 0.00 44.85 2.59 F
669 675 0.817654 CTTTCCCCGCCATCTTTTCC 59.182 55.000 0.00 0.00 0.00 3.13 F
810 830 1.006688 AAAATGGGAAACGCGGTGC 60.007 52.632 12.47 0.12 0.00 5.01 F
2652 2722 0.108424 ACTCTTGCAGGTGCTCGATC 60.108 55.000 3.18 0.00 42.66 3.69 F
3519 3593 0.469705 TGCTCAAGGTTGCCCAATGT 60.470 50.000 0.00 0.00 0.00 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1428 1451 0.461961 CATTGGAGAGGTCGAGGTCC 59.538 60.000 0.00 0.00 0.00 4.46 R
1671 1701 0.839946 GGCTCACCATGGTGTAGGAT 59.160 55.000 37.49 3.66 45.55 3.24 R
2365 2405 1.331756 CCCGTAGTGATTTGCTGCATC 59.668 52.381 1.84 0.00 0.00 3.91 R
2493 2536 8.703604 TGCTATATTAAAATCCTAGCGACATC 57.296 34.615 10.31 0.00 38.07 3.06 R
2594 2663 3.054655 AGTTTATTGGCCACGATACTGGT 60.055 43.478 3.88 0.00 33.30 4.00 R
2760 2830 2.366590 TGCCCAGATGATGCTACTACAG 59.633 50.000 0.00 0.00 0.00 2.74 R
3587 3661 0.317269 CCAGTGTGTTCAGCTTTGCG 60.317 55.000 0.00 0.00 0.00 4.85 R
5308 7592 0.257039 AAGTTGCCCCTAGGATGCAG 59.743 55.000 20.68 1.11 36.21 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.633830 CCTATATGAATCATGCGGCTTTT 57.366 39.130 5.91 0.00 0.00 2.27
23 24 5.396484 CCTATATGAATCATGCGGCTTTTG 58.604 41.667 5.91 0.00 0.00 2.44
24 25 1.930567 ATGAATCATGCGGCTTTTGC 58.069 45.000 0.00 0.00 46.64 3.68
39 40 5.733226 GCTTTTGCCAAAATACACAACTT 57.267 34.783 2.58 0.00 40.15 2.66
40 41 5.500825 GCTTTTGCCAAAATACACAACTTG 58.499 37.500 2.58 0.00 40.15 3.16
41 42 5.476752 TTTTGCCAAAATACACAACTTGC 57.523 34.783 0.00 0.00 0.00 4.01
42 43 4.399004 TTGCCAAAATACACAACTTGCT 57.601 36.364 0.00 0.00 0.00 3.91
43 44 4.399004 TGCCAAAATACACAACTTGCTT 57.601 36.364 0.00 0.00 0.00 3.91
44 45 4.367450 TGCCAAAATACACAACTTGCTTC 58.633 39.130 0.00 0.00 0.00 3.86
45 46 3.740832 GCCAAAATACACAACTTGCTTCC 59.259 43.478 0.00 0.00 0.00 3.46
46 47 3.980775 CCAAAATACACAACTTGCTTCCG 59.019 43.478 0.00 0.00 0.00 4.30
47 48 2.989422 AATACACAACTTGCTTCCGC 57.011 45.000 0.00 0.00 0.00 5.54
48 49 2.185004 ATACACAACTTGCTTCCGCT 57.815 45.000 0.00 0.00 36.97 5.52
49 50 2.823924 TACACAACTTGCTTCCGCTA 57.176 45.000 0.00 0.00 36.97 4.26
50 51 1.961793 ACACAACTTGCTTCCGCTAA 58.038 45.000 0.00 0.00 36.97 3.09
51 52 2.294074 ACACAACTTGCTTCCGCTAAA 58.706 42.857 0.00 0.00 36.97 1.85
52 53 2.685897 ACACAACTTGCTTCCGCTAAAA 59.314 40.909 0.00 0.00 36.97 1.52
53 54 3.042887 CACAACTTGCTTCCGCTAAAAC 58.957 45.455 0.00 0.00 36.97 2.43
54 55 2.685897 ACAACTTGCTTCCGCTAAAACA 59.314 40.909 0.00 0.00 36.97 2.83
55 56 3.042887 CAACTTGCTTCCGCTAAAACAC 58.957 45.455 0.00 0.00 36.97 3.32
56 57 2.294074 ACTTGCTTCCGCTAAAACACA 58.706 42.857 0.00 0.00 36.97 3.72
57 58 2.032924 ACTTGCTTCCGCTAAAACACAC 59.967 45.455 0.00 0.00 36.97 3.82
58 59 1.669604 TGCTTCCGCTAAAACACACA 58.330 45.000 0.00 0.00 36.97 3.72
59 60 1.332375 TGCTTCCGCTAAAACACACAC 59.668 47.619 0.00 0.00 36.97 3.82
60 61 1.332375 GCTTCCGCTAAAACACACACA 59.668 47.619 0.00 0.00 0.00 3.72
61 62 2.031157 GCTTCCGCTAAAACACACACAT 60.031 45.455 0.00 0.00 0.00 3.21
62 63 3.810373 CTTCCGCTAAAACACACACATC 58.190 45.455 0.00 0.00 0.00 3.06
63 64 3.120321 TCCGCTAAAACACACACATCT 57.880 42.857 0.00 0.00 0.00 2.90
64 65 4.260139 TCCGCTAAAACACACACATCTA 57.740 40.909 0.00 0.00 0.00 1.98
65 66 4.827692 TCCGCTAAAACACACACATCTAT 58.172 39.130 0.00 0.00 0.00 1.98
66 67 5.968254 TCCGCTAAAACACACACATCTATA 58.032 37.500 0.00 0.00 0.00 1.31
67 68 6.578944 TCCGCTAAAACACACACATCTATAT 58.421 36.000 0.00 0.00 0.00 0.86
68 69 7.718525 TCCGCTAAAACACACACATCTATATA 58.281 34.615 0.00 0.00 0.00 0.86
69 70 8.198778 TCCGCTAAAACACACACATCTATATAA 58.801 33.333 0.00 0.00 0.00 0.98
70 71 8.822855 CCGCTAAAACACACACATCTATATAAA 58.177 33.333 0.00 0.00 0.00 1.40
77 78 8.021955 ACACACACATCTATATAAATCATGCG 57.978 34.615 0.00 0.00 0.00 4.73
78 79 7.118245 ACACACACATCTATATAAATCATGCGG 59.882 37.037 0.00 0.00 0.00 5.69
79 80 6.092670 ACACACATCTATATAAATCATGCGGC 59.907 38.462 0.00 0.00 0.00 6.53
80 81 6.314648 CACACATCTATATAAATCATGCGGCT 59.685 38.462 0.00 0.00 0.00 5.52
81 82 6.881065 ACACATCTATATAAATCATGCGGCTT 59.119 34.615 0.00 0.00 0.00 4.35
82 83 7.065085 ACACATCTATATAAATCATGCGGCTTC 59.935 37.037 0.00 0.00 0.00 3.86
83 84 7.279536 CACATCTATATAAATCATGCGGCTTCT 59.720 37.037 0.00 0.00 0.00 2.85
84 85 7.279536 ACATCTATATAAATCATGCGGCTTCTG 59.720 37.037 0.00 0.00 0.00 3.02
85 86 6.701340 TCTATATAAATCATGCGGCTTCTGT 58.299 36.000 0.00 0.00 0.00 3.41
86 87 5.869753 ATATAAATCATGCGGCTTCTGTC 57.130 39.130 0.00 0.00 0.00 3.51
87 88 1.825090 AAATCATGCGGCTTCTGTCA 58.175 45.000 0.00 0.00 0.00 3.58
88 89 1.825090 AATCATGCGGCTTCTGTCAA 58.175 45.000 0.00 0.00 0.00 3.18
89 90 1.825090 ATCATGCGGCTTCTGTCAAA 58.175 45.000 0.00 0.00 0.00 2.69
90 91 1.603456 TCATGCGGCTTCTGTCAAAA 58.397 45.000 0.00 0.00 0.00 2.44
91 92 2.161855 TCATGCGGCTTCTGTCAAAAT 58.838 42.857 0.00 0.00 0.00 1.82
92 93 3.342719 TCATGCGGCTTCTGTCAAAATA 58.657 40.909 0.00 0.00 0.00 1.40
93 94 3.126858 TCATGCGGCTTCTGTCAAAATAC 59.873 43.478 0.00 0.00 0.00 1.89
94 95 2.499197 TGCGGCTTCTGTCAAAATACA 58.501 42.857 0.00 0.00 0.00 2.29
95 96 2.225491 TGCGGCTTCTGTCAAAATACAC 59.775 45.455 0.00 0.00 0.00 2.90
96 97 2.225491 GCGGCTTCTGTCAAAATACACA 59.775 45.455 0.00 0.00 0.00 3.72
97 98 3.667960 GCGGCTTCTGTCAAAATACACAG 60.668 47.826 0.00 0.00 41.32 3.66
98 99 3.667960 CGGCTTCTGTCAAAATACACAGC 60.668 47.826 0.00 0.00 40.01 4.40
99 100 3.503748 GGCTTCTGTCAAAATACACAGCT 59.496 43.478 0.00 0.00 40.01 4.24
100 101 4.022849 GGCTTCTGTCAAAATACACAGCTT 60.023 41.667 0.00 0.00 40.01 3.74
101 102 4.913924 GCTTCTGTCAAAATACACAGCTTG 59.086 41.667 0.00 0.00 40.01 4.01
102 103 4.488126 TCTGTCAAAATACACAGCTTGC 57.512 40.909 0.00 0.00 40.01 4.01
103 104 4.136796 TCTGTCAAAATACACAGCTTGCT 58.863 39.130 0.00 0.00 40.01 3.91
104 105 4.580167 TCTGTCAAAATACACAGCTTGCTT 59.420 37.500 0.00 0.00 40.01 3.91
105 106 4.858935 TGTCAAAATACACAGCTTGCTTC 58.141 39.130 0.00 0.00 0.00 3.86
106 107 4.229876 GTCAAAATACACAGCTTGCTTCC 58.770 43.478 0.00 0.00 0.00 3.46
107 108 3.058293 TCAAAATACACAGCTTGCTTCCG 60.058 43.478 0.00 0.00 0.00 4.30
108 109 0.804989 AATACACAGCTTGCTTCCGC 59.195 50.000 0.00 0.00 0.00 5.54
109 110 0.036010 ATACACAGCTTGCTTCCGCT 60.036 50.000 0.00 0.00 36.83 5.52
110 111 0.606096 TACACAGCTTGCTTCCGCTA 59.394 50.000 0.00 0.00 34.58 4.26
111 112 0.250295 ACACAGCTTGCTTCCGCTAA 60.250 50.000 0.00 0.00 34.58 3.09
112 113 0.874390 CACAGCTTGCTTCCGCTAAA 59.126 50.000 0.00 0.00 34.58 1.85
113 114 1.266718 CACAGCTTGCTTCCGCTAAAA 59.733 47.619 0.00 0.00 34.58 1.52
114 115 1.266989 ACAGCTTGCTTCCGCTAAAAC 59.733 47.619 0.00 0.00 34.58 2.43
115 116 1.266718 CAGCTTGCTTCCGCTAAAACA 59.733 47.619 0.00 0.00 34.58 2.83
116 117 1.266989 AGCTTGCTTCCGCTAAAACAC 59.733 47.619 0.00 0.00 34.11 3.32
117 118 1.001815 GCTTGCTTCCGCTAAAACACA 60.002 47.619 0.00 0.00 36.97 3.72
118 119 2.650608 CTTGCTTCCGCTAAAACACAC 58.349 47.619 0.00 0.00 36.97 3.82
119 120 1.669604 TGCTTCCGCTAAAACACACA 58.330 45.000 0.00 0.00 36.97 3.72
120 121 1.332375 TGCTTCCGCTAAAACACACAC 59.668 47.619 0.00 0.00 36.97 3.82
121 122 1.332375 GCTTCCGCTAAAACACACACA 59.668 47.619 0.00 0.00 0.00 3.72
122 123 2.853281 GCTTCCGCTAAAACACACACAC 60.853 50.000 0.00 0.00 0.00 3.82
123 124 2.025589 TCCGCTAAAACACACACACA 57.974 45.000 0.00 0.00 0.00 3.72
124 125 1.666700 TCCGCTAAAACACACACACAC 59.333 47.619 0.00 0.00 0.00 3.82
125 126 1.268335 CCGCTAAAACACACACACACC 60.268 52.381 0.00 0.00 0.00 4.16
126 127 1.668751 CGCTAAAACACACACACACCT 59.331 47.619 0.00 0.00 0.00 4.00
127 128 2.867368 CGCTAAAACACACACACACCTA 59.133 45.455 0.00 0.00 0.00 3.08
128 129 3.302870 CGCTAAAACACACACACACCTAC 60.303 47.826 0.00 0.00 0.00 3.18
129 130 3.623960 GCTAAAACACACACACACCTACA 59.376 43.478 0.00 0.00 0.00 2.74
130 131 4.274950 GCTAAAACACACACACACCTACAT 59.725 41.667 0.00 0.00 0.00 2.29
131 132 4.630894 AAAACACACACACACCTACATG 57.369 40.909 0.00 0.00 0.00 3.21
132 133 1.593196 ACACACACACACCTACATGC 58.407 50.000 0.00 0.00 0.00 4.06
133 134 1.140852 ACACACACACACCTACATGCT 59.859 47.619 0.00 0.00 0.00 3.79
134 135 2.221169 CACACACACACCTACATGCTT 58.779 47.619 0.00 0.00 0.00 3.91
135 136 2.224079 CACACACACACCTACATGCTTC 59.776 50.000 0.00 0.00 0.00 3.86
136 137 2.158827 ACACACACACCTACATGCTTCA 60.159 45.455 0.00 0.00 0.00 3.02
137 138 2.224079 CACACACACCTACATGCTTCAC 59.776 50.000 0.00 0.00 0.00 3.18
138 139 1.460743 CACACACCTACATGCTTCACG 59.539 52.381 0.00 0.00 0.00 4.35
139 140 0.443869 CACACCTACATGCTTCACGC 59.556 55.000 0.00 0.00 39.77 5.34
140 141 1.014044 ACACCTACATGCTTCACGCG 61.014 55.000 3.53 3.53 43.27 6.01
141 142 1.447838 ACCTACATGCTTCACGCGG 60.448 57.895 12.47 0.00 43.27 6.46
142 143 2.703409 CTACATGCTTCACGCGGC 59.297 61.111 12.47 4.24 43.27 6.53
143 144 1.811266 CTACATGCTTCACGCGGCT 60.811 57.895 12.47 0.00 43.27 5.52
144 145 1.361668 CTACATGCTTCACGCGGCTT 61.362 55.000 12.47 0.00 43.27 4.35
145 146 1.358725 TACATGCTTCACGCGGCTTC 61.359 55.000 12.47 0.00 43.27 3.86
146 147 2.046892 ATGCTTCACGCGGCTTCT 60.047 55.556 12.47 0.00 43.27 2.85
147 148 2.393768 ATGCTTCACGCGGCTTCTG 61.394 57.895 12.47 0.00 43.27 3.02
148 149 4.451652 GCTTCACGCGGCTTCTGC 62.452 66.667 12.47 2.99 38.76 4.26
149 150 2.740055 CTTCACGCGGCTTCTGCT 60.740 61.111 12.47 0.00 39.59 4.24
150 151 1.446099 CTTCACGCGGCTTCTGCTA 60.446 57.895 12.47 0.00 39.59 3.49
151 152 0.807667 CTTCACGCGGCTTCTGCTAT 60.808 55.000 12.47 0.00 39.59 2.97
152 153 0.458260 TTCACGCGGCTTCTGCTATA 59.542 50.000 12.47 0.00 39.59 1.31
153 154 0.673985 TCACGCGGCTTCTGCTATAT 59.326 50.000 12.47 0.00 39.59 0.86
154 155 1.883926 TCACGCGGCTTCTGCTATATA 59.116 47.619 12.47 0.00 39.59 0.86
155 156 2.295070 TCACGCGGCTTCTGCTATATAA 59.705 45.455 12.47 0.00 39.59 0.98
156 157 3.057019 CACGCGGCTTCTGCTATATAAA 58.943 45.455 12.47 0.00 39.59 1.40
157 158 3.679980 CACGCGGCTTCTGCTATATAAAT 59.320 43.478 12.47 0.00 39.59 1.40
158 159 3.927142 ACGCGGCTTCTGCTATATAAATC 59.073 43.478 12.47 0.00 39.59 2.17
159 160 3.926527 CGCGGCTTCTGCTATATAAATCA 59.073 43.478 0.00 0.00 39.59 2.57
160 161 4.568359 CGCGGCTTCTGCTATATAAATCAT 59.432 41.667 0.00 0.00 39.59 2.45
261 262 2.220479 GGAGATGCCGTAACACCTAC 57.780 55.000 0.00 0.00 0.00 3.18
262 263 1.755380 GGAGATGCCGTAACACCTACT 59.245 52.381 0.00 0.00 0.00 2.57
263 264 2.223758 GGAGATGCCGTAACACCTACTC 60.224 54.545 0.00 0.00 0.00 2.59
264 265 2.688958 GAGATGCCGTAACACCTACTCT 59.311 50.000 0.00 0.00 0.00 3.24
265 266 2.688958 AGATGCCGTAACACCTACTCTC 59.311 50.000 0.00 0.00 0.00 3.20
266 267 2.211250 TGCCGTAACACCTACTCTCT 57.789 50.000 0.00 0.00 0.00 3.10
267 268 2.089980 TGCCGTAACACCTACTCTCTC 58.910 52.381 0.00 0.00 0.00 3.20
268 269 2.290768 TGCCGTAACACCTACTCTCTCT 60.291 50.000 0.00 0.00 0.00 3.10
269 270 2.097791 GCCGTAACACCTACTCTCTCTG 59.902 54.545 0.00 0.00 0.00 3.35
270 271 3.345414 CCGTAACACCTACTCTCTCTGT 58.655 50.000 0.00 0.00 0.00 3.41
271 272 3.757493 CCGTAACACCTACTCTCTCTGTT 59.243 47.826 0.00 0.00 0.00 3.16
272 273 4.217983 CCGTAACACCTACTCTCTCTGTTT 59.782 45.833 0.00 0.00 0.00 2.83
273 274 5.278858 CCGTAACACCTACTCTCTCTGTTTT 60.279 44.000 0.00 0.00 0.00 2.43
274 275 6.072286 CCGTAACACCTACTCTCTCTGTTTTA 60.072 42.308 0.00 0.00 0.00 1.52
275 276 7.365741 CGTAACACCTACTCTCTCTGTTTTAA 58.634 38.462 0.00 0.00 0.00 1.52
276 277 7.864379 CGTAACACCTACTCTCTCTGTTTTAAA 59.136 37.037 0.00 0.00 0.00 1.52
277 278 9.538508 GTAACACCTACTCTCTCTGTTTTAAAA 57.461 33.333 0.00 0.00 0.00 1.52
280 281 9.930693 ACACCTACTCTCTCTGTTTTAAAATAG 57.069 33.333 16.26 16.26 0.00 1.73
299 300 8.480643 AAAATAGATGACTCAACTTACGAAGG 57.519 34.615 0.00 0.00 0.00 3.46
300 301 7.406031 AATAGATGACTCAACTTACGAAGGA 57.594 36.000 0.00 0.00 0.00 3.36
301 302 5.723672 AGATGACTCAACTTACGAAGGAA 57.276 39.130 0.00 0.00 0.00 3.36
302 303 5.715070 AGATGACTCAACTTACGAAGGAAG 58.285 41.667 0.00 0.00 0.00 3.46
303 304 4.931661 TGACTCAACTTACGAAGGAAGT 57.068 40.909 0.00 0.00 38.81 3.01
304 305 6.433404 AGATGACTCAACTTACGAAGGAAGTA 59.567 38.462 0.00 0.00 36.10 2.24
305 306 6.585695 TGACTCAACTTACGAAGGAAGTAT 57.414 37.500 0.00 0.00 36.10 2.12
306 307 6.989659 TGACTCAACTTACGAAGGAAGTATT 58.010 36.000 0.00 0.00 36.10 1.89
307 308 7.439381 TGACTCAACTTACGAAGGAAGTATTT 58.561 34.615 0.00 0.00 36.10 1.40
308 309 7.929785 TGACTCAACTTACGAAGGAAGTATTTT 59.070 33.333 0.00 0.00 36.10 1.82
309 310 8.672823 ACTCAACTTACGAAGGAAGTATTTTT 57.327 30.769 0.00 0.00 36.10 1.94
464 467 0.392998 CTCCCCATTTCTCACCACCG 60.393 60.000 0.00 0.00 0.00 4.94
465 468 2.046285 CCCCATTTCTCACCACCGC 61.046 63.158 0.00 0.00 0.00 5.68
468 471 2.046314 ATTTCTCACCACCGCCCG 60.046 61.111 0.00 0.00 0.00 6.13
482 485 2.365635 CCCGTCCTCACCCTCCAT 60.366 66.667 0.00 0.00 0.00 3.41
485 488 1.264749 CCGTCCTCACCCTCCATCAA 61.265 60.000 0.00 0.00 0.00 2.57
487 490 0.984230 GTCCTCACCCTCCATCAACA 59.016 55.000 0.00 0.00 0.00 3.33
489 492 0.692476 CCTCACCCTCCATCAACACA 59.308 55.000 0.00 0.00 0.00 3.72
490 493 1.611673 CCTCACCCTCCATCAACACAC 60.612 57.143 0.00 0.00 0.00 3.82
491 494 1.072173 CTCACCCTCCATCAACACACA 59.928 52.381 0.00 0.00 0.00 3.72
514 517 0.949105 GACCCACACGTCACCATGAC 60.949 60.000 0.00 0.00 43.65 3.06
515 518 1.371183 CCCACACGTCACCATGACT 59.629 57.895 7.33 0.00 44.85 3.41
516 519 0.606096 CCCACACGTCACCATGACTA 59.394 55.000 7.33 0.00 44.85 2.59
519 522 2.540515 CACACGTCACCATGACTATCC 58.459 52.381 7.33 0.00 44.85 2.59
543 546 4.090588 CGGGTAAGGGCCGAAGCA 62.091 66.667 11.56 0.00 42.56 3.91
669 675 0.817654 CTTTCCCCGCCATCTTTTCC 59.182 55.000 0.00 0.00 0.00 3.13
740 746 4.892379 CGCGCAATGACCATGCCG 62.892 66.667 8.75 0.00 40.72 5.69
796 815 4.054825 CAGCACGCGGGGCAAAAT 62.055 61.111 23.75 3.58 0.00 1.82
805 825 1.375396 GGGGCAAAATGGGAAACGC 60.375 57.895 0.00 0.00 0.00 4.84
810 830 1.006688 AAAATGGGAAACGCGGTGC 60.007 52.632 12.47 0.12 0.00 5.01
867 888 2.143122 GCAGTCTCGACATTTCCAACA 58.857 47.619 0.00 0.00 0.00 3.33
885 906 4.309933 CAACATTCCTTGCTTTTTCCCTC 58.690 43.478 0.00 0.00 0.00 4.30
886 907 3.849527 ACATTCCTTGCTTTTTCCCTCT 58.150 40.909 0.00 0.00 0.00 3.69
887 908 3.829026 ACATTCCTTGCTTTTTCCCTCTC 59.171 43.478 0.00 0.00 0.00 3.20
888 909 2.586648 TCCTTGCTTTTTCCCTCTCC 57.413 50.000 0.00 0.00 0.00 3.71
913 934 1.266718 TCCTTCTTGATTGTTGCGTGC 59.733 47.619 0.00 0.00 0.00 5.34
947 969 4.887615 GCCATTGCTACTCCTCCC 57.112 61.111 0.00 0.00 33.53 4.30
956 978 1.682740 CTACTCCTCCCTCCGTTCTC 58.317 60.000 0.00 0.00 0.00 2.87
984 1006 1.008538 GCGAACAACCAACTGCCAG 60.009 57.895 0.00 0.00 0.00 4.85
987 1009 2.087462 GAACAACCAACTGCCAGCCC 62.087 60.000 0.00 0.00 0.00 5.19
1750 1780 5.320549 CATTTCTTGGATGAAGGGAGTTG 57.679 43.478 0.00 0.00 31.85 3.16
1835 1866 5.859205 AGAGAGTTGATTTTGGTGCTTTT 57.141 34.783 0.00 0.00 0.00 2.27
1878 1909 3.574396 TGTCTCTCACGTGAATTTCTCCT 59.426 43.478 20.49 0.00 0.00 3.69
1885 1916 3.367025 CACGTGAATTTCTCCTTACGGTC 59.633 47.826 10.90 0.00 36.01 4.79
2021 2053 7.476667 TCGCAGTGAAAATTACTTTTCTTGAA 58.523 30.769 16.45 7.06 46.84 2.69
2068 2100 9.801873 TTTTAAAAATATCTGCAAGGACTATGC 57.198 29.630 0.00 0.00 44.08 3.14
2079 2111 5.894807 GCAAGGACTATGCATTGTACATTT 58.105 37.500 22.93 8.83 43.29 2.32
2080 2112 5.973565 GCAAGGACTATGCATTGTACATTTC 59.026 40.000 22.93 6.57 43.29 2.17
2081 2113 6.404623 GCAAGGACTATGCATTGTACATTTCA 60.405 38.462 22.93 0.00 43.29 2.69
2082 2114 7.682741 GCAAGGACTATGCATTGTACATTTCAT 60.683 37.037 22.93 2.16 43.29 2.57
2083 2115 7.268199 AGGACTATGCATTGTACATTTCATG 57.732 36.000 22.93 6.94 0.00 3.07
2085 2117 7.722728 AGGACTATGCATTGTACATTTCATGAT 59.277 33.333 22.93 0.00 0.00 2.45
2086 2118 8.019669 GGACTATGCATTGTACATTTCATGATC 58.980 37.037 17.34 8.96 0.00 2.92
2091 2123 9.687210 ATGCATTGTACATTTCATGATCATTAC 57.313 29.630 5.16 5.79 0.00 1.89
2092 2124 8.136800 TGCATTGTACATTTCATGATCATTACC 58.863 33.333 5.16 0.00 0.00 2.85
2093 2125 8.355169 GCATTGTACATTTCATGATCATTACCT 58.645 33.333 5.16 0.00 0.00 3.08
2094 2126 9.888878 CATTGTACATTTCATGATCATTACCTC 57.111 33.333 5.16 0.00 0.00 3.85
2098 2130 7.798596 ACATTTCATGATCATTACCTCACTC 57.201 36.000 5.16 0.00 0.00 3.51
2099 2131 7.571919 ACATTTCATGATCATTACCTCACTCT 58.428 34.615 5.16 0.00 0.00 3.24
2100 2132 8.051535 ACATTTCATGATCATTACCTCACTCTT 58.948 33.333 5.16 0.00 0.00 2.85
2103 2135 6.343703 TCATGATCATTACCTCACTCTTGTG 58.656 40.000 5.16 0.00 45.07 3.33
2114 2146 2.704572 CACTCTTGTGAGGATGGGAAC 58.295 52.381 0.00 0.00 46.55 3.62
2115 2147 2.409948 CTCTTGTGAGGATGGGAACC 57.590 55.000 0.00 0.00 42.54 3.62
2134 2166 7.625828 GGAACCAGTAGTACATTTTATTGCT 57.374 36.000 2.52 0.00 0.00 3.91
2135 2167 8.051901 GGAACCAGTAGTACATTTTATTGCTT 57.948 34.615 2.52 0.00 0.00 3.91
2136 2168 9.169592 GGAACCAGTAGTACATTTTATTGCTTA 57.830 33.333 2.52 0.00 0.00 3.09
2189 2229 3.529319 AGGATGGGAATGGCTACTTTCTT 59.471 43.478 0.00 0.00 32.86 2.52
2190 2230 3.885901 GGATGGGAATGGCTACTTTCTTC 59.114 47.826 0.00 0.00 32.86 2.87
2222 2262 8.200792 TGCCAAATAGACAAACACACTAATTTT 58.799 29.630 0.00 0.00 0.00 1.82
2233 2273 8.803799 CAAACACACTAATTTTGTTGGACTAAC 58.196 33.333 0.00 0.00 39.80 2.34
2365 2405 3.878778 CCCTTAGTGGTCTTGAGAATGG 58.121 50.000 0.00 0.00 0.00 3.16
2446 2486 2.997980 TGTGTGTGTCATGTCACCTTT 58.002 42.857 18.43 0.00 37.51 3.11
2489 2532 8.947115 GCTCAACTCTTTGTGTAGGTTTATATT 58.053 33.333 0.00 0.00 34.02 1.28
2532 2593 2.113860 ATAGCATGTTTGGCACGTCT 57.886 45.000 0.00 0.00 0.00 4.18
2580 2649 5.810587 AGTTACATTAGAACATGTGTAGGCG 59.189 40.000 0.00 0.00 37.93 5.52
2594 2663 3.249080 GTGTAGGCGCTCAACAAAGTTTA 59.751 43.478 7.64 0.00 0.00 2.01
2652 2722 0.108424 ACTCTTGCAGGTGCTCGATC 60.108 55.000 3.18 0.00 42.66 3.69
2760 2830 9.167239 CGTACTGCTGTAATGTAAGTATCTAAC 57.833 37.037 4.88 0.00 0.00 2.34
2868 2938 4.996788 ATGCTTCCAAATGCTTCCTAAG 57.003 40.909 0.00 0.00 0.00 2.18
2970 3040 0.471617 AGTTGAGCCTGAGCAAGTGT 59.528 50.000 0.00 0.00 43.56 3.55
3069 3139 4.777140 TCGCAATATCACTGATGTTTCG 57.223 40.909 12.23 12.23 33.25 3.46
3076 3146 7.042725 GCAATATCACTGATGTTTCGTTAGCTA 60.043 37.037 1.42 0.00 0.00 3.32
3103 3173 1.402896 TAGCTCATGCCCTTCCCTCG 61.403 60.000 0.00 0.00 40.80 4.63
3328 3402 4.559862 AACGGTGATGAGATCTTTCCTT 57.440 40.909 0.00 0.00 0.00 3.36
3512 3586 3.375782 ACTCAAATTGCTCAAGGTTGC 57.624 42.857 0.00 0.00 0.00 4.17
3519 3593 0.469705 TGCTCAAGGTTGCCCAATGT 60.470 50.000 0.00 0.00 0.00 2.71
3587 3661 0.874390 TGGTGTCGCTCTCAAAATGC 59.126 50.000 0.00 0.00 0.00 3.56
3771 3845 3.493350 CCTCCGTCAGGTATGATCCTTTG 60.493 52.174 0.00 0.00 37.87 2.77
3778 3860 4.701651 TCAGGTATGATCCTTTGCTGTTTG 59.298 41.667 0.00 0.00 35.37 2.93
3779 3861 4.460382 CAGGTATGATCCTTTGCTGTTTGT 59.540 41.667 0.00 0.00 35.37 2.83
3780 3862 5.047802 CAGGTATGATCCTTTGCTGTTTGTT 60.048 40.000 0.00 0.00 35.37 2.83
3781 3863 5.539955 AGGTATGATCCTTTGCTGTTTGTTT 59.460 36.000 0.00 0.00 33.52 2.83
3782 3864 5.634859 GGTATGATCCTTTGCTGTTTGTTTG 59.365 40.000 0.00 0.00 0.00 2.93
3826 3908 5.006358 GTCATACCGTGTCCATAATTGTGTC 59.994 44.000 1.26 0.00 0.00 3.67
3839 3921 9.183368 TCCATAATTGTGTCATTAACATTGCTA 57.817 29.630 1.26 0.00 40.80 3.49
3871 3953 8.147704 TGACAGATAAACTTGTCATACTGTTCA 58.852 33.333 3.40 0.00 37.45 3.18
4039 4121 3.616076 CGTTCAGATCTATGATGCCTCCC 60.616 52.174 0.00 0.00 0.00 4.30
4057 4139 2.238646 TCCCCATATGCTCAAAGTCGTT 59.761 45.455 0.00 0.00 0.00 3.85
4134 4216 1.973201 GCCCCCTTACAAGCCTAGGTA 60.973 57.143 11.31 0.00 0.00 3.08
4280 4362 4.681421 TTGCAGGTCGAGCAAGAG 57.319 55.556 18.15 4.78 46.13 2.85
4349 4432 8.768019 CGATGAGATTATGAGAAATGCTTGTTA 58.232 33.333 0.00 0.00 0.00 2.41
4370 4453 1.004277 CGTCGTCTTGACTGTCAGCC 61.004 60.000 10.77 2.44 45.87 4.85
4371 4454 0.315568 GTCGTCTTGACTGTCAGCCT 59.684 55.000 10.77 0.00 44.58 4.58
4442 4532 3.703420 AGTTGTGTACAGAACAGACGTC 58.297 45.455 30.65 7.70 39.29 4.34
4586 4684 5.572126 GTCGACCTGTACTTTACTGATCAAC 59.428 44.000 3.51 0.00 0.00 3.18
4637 4735 6.744112 TGTCCAATGTGTTCTTATTTGGAAC 58.256 36.000 4.39 0.00 42.17 3.62
4718 4816 8.245195 TGGTATACTGCATGATACAACTAGAA 57.755 34.615 16.03 0.00 31.34 2.10
4746 4873 7.809650 AAAAGGAAGTTGCTTTTGCTGACCTA 61.810 38.462 27.91 0.00 44.48 3.08
4774 4905 9.764363 GGTTAATTGTTCTTTCTTCTTTTCCAT 57.236 29.630 0.00 0.00 0.00 3.41
4788 4919 8.310382 TCTTCTTTTCCATATAGATAGAGCTGC 58.690 37.037 0.00 0.00 0.00 5.25
4791 4922 5.568685 TTCCATATAGATAGAGCTGCGAC 57.431 43.478 0.00 0.00 0.00 5.19
4797 4928 1.202582 AGATAGAGCTGCGACGTTTGT 59.797 47.619 0.00 0.00 0.00 2.83
4806 4937 4.307908 GACGTTTGTTGCGCCGCT 62.308 61.111 11.67 0.00 0.00 5.52
4807 4938 4.605967 ACGTTTGTTGCGCCGCTG 62.606 61.111 11.67 0.00 0.00 5.18
4809 4940 4.629115 GTTTGTTGCGCCGCTGCT 62.629 61.111 11.67 0.00 35.36 4.24
4825 6912 4.624364 CTGTCCTGCCACGCCACA 62.624 66.667 0.00 0.00 0.00 4.17
4837 6924 1.077501 CGCCACATGTCCCCAATCT 60.078 57.895 0.00 0.00 0.00 2.40
4852 7129 5.131142 TCCCCAATCTGATCTAGGAAAGTTC 59.869 44.000 0.00 0.00 0.00 3.01
4857 7134 7.656948 CCAATCTGATCTAGGAAAGTTCTCATC 59.343 40.741 0.00 0.00 0.00 2.92
4868 7145 2.551270 AGTTCTCATCCACTTAGGCCA 58.449 47.619 5.01 0.00 37.29 5.36
4869 7146 3.118531 AGTTCTCATCCACTTAGGCCAT 58.881 45.455 5.01 0.00 37.29 4.40
4873 7150 3.782523 TCTCATCCACTTAGGCCATCTTT 59.217 43.478 5.01 0.00 37.29 2.52
4884 7161 2.091665 AGGCCATCTTTGGTTCATAGGG 60.092 50.000 5.01 0.00 45.57 3.53
4890 7167 6.423182 CCATCTTTGGTTCATAGGGTAGAAA 58.577 40.000 0.00 0.00 38.30 2.52
4892 7169 7.396055 CCATCTTTGGTTCATAGGGTAGAAAAA 59.604 37.037 0.00 0.00 38.30 1.94
4896 7173 8.893563 TTTGGTTCATAGGGTAGAAAAATCAT 57.106 30.769 0.00 0.00 0.00 2.45
4899 7176 8.998814 TGGTTCATAGGGTAGAAAAATCATAGA 58.001 33.333 0.00 0.00 0.00 1.98
5094 7377 8.456471 GGATTATATTCCTATAAACAAACGGGC 58.544 37.037 6.44 0.00 34.35 6.13
5097 7380 5.830000 ATTCCTATAAACAAACGGGCTTC 57.170 39.130 0.00 0.00 0.00 3.86
5098 7381 3.264104 TCCTATAAACAAACGGGCTTCG 58.736 45.455 0.00 0.00 45.88 3.79
5106 7389 2.424246 ACAAACGGGCTTCGAAGAAAAA 59.576 40.909 28.95 0.00 45.90 1.94
5152 7435 9.749340 CCTAAACCTTTTCCTAGGATTTCTTTA 57.251 33.333 13.57 9.88 38.73 1.85
5183 7466 3.131046 TGCGCTATCAGACATTCTCTCAA 59.869 43.478 9.73 0.00 0.00 3.02
5187 7470 6.563753 GCGCTATCAGACATTCTCTCAAATTC 60.564 42.308 0.00 0.00 0.00 2.17
5189 7472 7.864882 CGCTATCAGACATTCTCTCAAATTCTA 59.135 37.037 0.00 0.00 0.00 2.10
5196 7479 9.661954 AGACATTCTCTCAAATTCTATAGGGTA 57.338 33.333 0.00 0.00 0.00 3.69
5197 7480 9.699703 GACATTCTCTCAAATTCTATAGGGTAC 57.300 37.037 0.00 0.00 0.00 3.34
5214 7497 5.965486 AGGGTACTATAGGACATGACATCA 58.035 41.667 17.06 0.00 0.00 3.07
5254 7538 9.638239 TTTCTATTTTTCATTTTGAGAATCCCG 57.362 29.630 0.00 0.00 0.00 5.14
5266 7550 2.541762 GAGAATCCCGCGAATCAAAGAG 59.458 50.000 8.23 0.00 0.00 2.85
5267 7551 1.003438 GAATCCCGCGAATCAAAGAGC 60.003 52.381 8.23 0.00 0.00 4.09
5270 7554 1.745115 CCGCGAATCAAAGAGCCCA 60.745 57.895 8.23 0.00 0.00 5.36
5271 7555 1.425428 CGCGAATCAAAGAGCCCAC 59.575 57.895 0.00 0.00 0.00 4.61
5272 7556 1.803289 GCGAATCAAAGAGCCCACC 59.197 57.895 0.00 0.00 0.00 4.61
5273 7557 1.982073 GCGAATCAAAGAGCCCACCG 61.982 60.000 0.00 0.00 0.00 4.94
5291 7575 2.162809 ACCGATCGCCATTTACCAAAAC 59.837 45.455 10.32 0.00 0.00 2.43
5300 7584 5.656480 GCCATTTACCAAAACGAATACCAT 58.344 37.500 0.00 0.00 0.00 3.55
5308 7592 6.859017 ACCAAAACGAATACCATTGAATACC 58.141 36.000 0.00 0.00 0.00 2.73
5315 7599 5.106555 CGAATACCATTGAATACCTGCATCC 60.107 44.000 0.00 0.00 0.00 3.51
5380 7664 9.578576 ACCAAATATCTATATGCATGTTTGACT 57.421 29.630 10.16 0.00 34.64 3.41
5386 7670 7.776933 TCTATATGCATGTTTGACTCTGTTC 57.223 36.000 10.16 0.00 0.00 3.18
5387 7671 7.330262 TCTATATGCATGTTTGACTCTGTTCA 58.670 34.615 10.16 0.00 0.00 3.18
5388 7672 7.989170 TCTATATGCATGTTTGACTCTGTTCAT 59.011 33.333 10.16 0.00 0.00 2.57
5389 7673 4.492791 TGCATGTTTGACTCTGTTCATG 57.507 40.909 0.00 0.00 36.68 3.07
5390 7674 4.136051 TGCATGTTTGACTCTGTTCATGA 58.864 39.130 0.00 0.00 35.98 3.07
5391 7675 4.214758 TGCATGTTTGACTCTGTTCATGAG 59.785 41.667 0.00 0.00 35.98 2.90
5392 7676 4.453478 GCATGTTTGACTCTGTTCATGAGA 59.547 41.667 0.00 0.00 35.98 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.396484 CAAAAGCCGCATGATTCATATAGG 58.604 41.667 0.00 4.62 0.00 2.57
1 2 4.855388 GCAAAAGCCGCATGATTCATATAG 59.145 41.667 0.00 0.00 0.00 1.31
2 3 4.321156 GGCAAAAGCCGCATGATTCATATA 60.321 41.667 0.00 0.00 0.00 0.86
3 4 3.553508 GGCAAAAGCCGCATGATTCATAT 60.554 43.478 0.00 0.00 0.00 1.78
4 5 2.223782 GGCAAAAGCCGCATGATTCATA 60.224 45.455 0.00 0.00 0.00 2.15
5 6 1.472026 GGCAAAAGCCGCATGATTCAT 60.472 47.619 0.00 0.00 0.00 2.57
6 7 0.108709 GGCAAAAGCCGCATGATTCA 60.109 50.000 0.00 0.00 0.00 2.57
7 8 0.108709 TGGCAAAAGCCGCATGATTC 60.109 50.000 0.00 0.00 0.00 2.52
8 9 0.321021 TTGGCAAAAGCCGCATGATT 59.679 45.000 0.00 0.00 0.00 2.57
9 10 0.321021 TTTGGCAAAAGCCGCATGAT 59.679 45.000 10.83 0.00 0.00 2.45
10 11 0.105593 TTTTGGCAAAAGCCGCATGA 59.894 45.000 20.81 0.00 0.00 3.07
11 12 1.158434 ATTTTGGCAAAAGCCGCATG 58.842 45.000 27.21 0.00 33.22 4.06
12 13 2.289320 TGTATTTTGGCAAAAGCCGCAT 60.289 40.909 27.21 14.03 33.22 4.73
13 14 1.069204 TGTATTTTGGCAAAAGCCGCA 59.931 42.857 27.21 19.42 33.22 5.69
14 15 1.459209 GTGTATTTTGGCAAAAGCCGC 59.541 47.619 27.21 21.44 33.22 6.53
15 16 2.748605 TGTGTATTTTGGCAAAAGCCG 58.251 42.857 27.21 0.00 33.22 5.52
16 17 4.126437 AGTTGTGTATTTTGGCAAAAGCC 58.874 39.130 27.21 20.16 33.22 4.35
17 18 5.500825 CAAGTTGTGTATTTTGGCAAAAGC 58.499 37.500 27.21 21.91 33.22 3.51
18 19 5.294060 AGCAAGTTGTGTATTTTGGCAAAAG 59.706 36.000 27.21 12.73 33.22 2.27
19 20 5.181748 AGCAAGTTGTGTATTTTGGCAAAA 58.818 33.333 25.94 25.94 34.41 2.44
20 21 4.764172 AGCAAGTTGTGTATTTTGGCAAA 58.236 34.783 8.93 8.93 0.00 3.68
21 22 4.399004 AGCAAGTTGTGTATTTTGGCAA 57.601 36.364 4.48 0.00 0.00 4.52
22 23 4.367450 GAAGCAAGTTGTGTATTTTGGCA 58.633 39.130 4.48 0.00 0.00 4.92
23 24 3.740832 GGAAGCAAGTTGTGTATTTTGGC 59.259 43.478 4.48 0.00 0.00 4.52
24 25 3.980775 CGGAAGCAAGTTGTGTATTTTGG 59.019 43.478 4.48 0.00 0.00 3.28
41 42 3.498397 AGATGTGTGTGTTTTAGCGGAAG 59.502 43.478 0.00 0.00 0.00 3.46
42 43 3.472652 AGATGTGTGTGTTTTAGCGGAA 58.527 40.909 0.00 0.00 0.00 4.30
43 44 3.120321 AGATGTGTGTGTTTTAGCGGA 57.880 42.857 0.00 0.00 0.00 5.54
44 45 6.844696 ATATAGATGTGTGTGTTTTAGCGG 57.155 37.500 0.00 0.00 0.00 5.52
51 52 8.498358 CGCATGATTTATATAGATGTGTGTGTT 58.502 33.333 0.00 0.00 0.00 3.32
52 53 7.118245 CCGCATGATTTATATAGATGTGTGTGT 59.882 37.037 0.00 0.00 0.00 3.72
53 54 7.458677 CCGCATGATTTATATAGATGTGTGTG 58.541 38.462 0.00 0.00 0.00 3.82
54 55 6.092670 GCCGCATGATTTATATAGATGTGTGT 59.907 38.462 0.00 0.00 0.00 3.72
55 56 6.314648 AGCCGCATGATTTATATAGATGTGTG 59.685 38.462 0.00 0.00 0.00 3.82
56 57 6.409704 AGCCGCATGATTTATATAGATGTGT 58.590 36.000 0.00 0.00 0.00 3.72
57 58 6.915544 AGCCGCATGATTTATATAGATGTG 57.084 37.500 0.00 0.00 0.00 3.21
58 59 7.279536 CAGAAGCCGCATGATTTATATAGATGT 59.720 37.037 0.00 0.00 0.00 3.06
59 60 7.279536 ACAGAAGCCGCATGATTTATATAGATG 59.720 37.037 0.00 0.00 0.00 2.90
60 61 7.334090 ACAGAAGCCGCATGATTTATATAGAT 58.666 34.615 0.00 0.00 0.00 1.98
61 62 6.701340 ACAGAAGCCGCATGATTTATATAGA 58.299 36.000 0.00 0.00 0.00 1.98
62 63 6.591448 TGACAGAAGCCGCATGATTTATATAG 59.409 38.462 0.00 0.00 0.00 1.31
63 64 6.463360 TGACAGAAGCCGCATGATTTATATA 58.537 36.000 0.00 0.00 0.00 0.86
64 65 5.308014 TGACAGAAGCCGCATGATTTATAT 58.692 37.500 0.00 0.00 0.00 0.86
65 66 4.702831 TGACAGAAGCCGCATGATTTATA 58.297 39.130 0.00 0.00 0.00 0.98
66 67 3.544684 TGACAGAAGCCGCATGATTTAT 58.455 40.909 0.00 0.00 0.00 1.40
67 68 2.984562 TGACAGAAGCCGCATGATTTA 58.015 42.857 0.00 0.00 0.00 1.40
68 69 1.825090 TGACAGAAGCCGCATGATTT 58.175 45.000 0.00 0.00 0.00 2.17
69 70 1.825090 TTGACAGAAGCCGCATGATT 58.175 45.000 0.00 0.00 0.00 2.57
70 71 1.825090 TTTGACAGAAGCCGCATGAT 58.175 45.000 0.00 0.00 0.00 2.45
71 72 1.603456 TTTTGACAGAAGCCGCATGA 58.397 45.000 0.00 0.00 0.00 3.07
72 73 2.642139 ATTTTGACAGAAGCCGCATG 57.358 45.000 0.00 0.00 0.00 4.06
73 74 3.081061 TGTATTTTGACAGAAGCCGCAT 58.919 40.909 0.00 0.00 0.00 4.73
74 75 2.225491 GTGTATTTTGACAGAAGCCGCA 59.775 45.455 0.00 0.00 0.00 5.69
75 76 2.225491 TGTGTATTTTGACAGAAGCCGC 59.775 45.455 0.00 0.00 0.00 6.53
76 77 3.667960 GCTGTGTATTTTGACAGAAGCCG 60.668 47.826 0.00 0.00 41.90 5.52
77 78 3.503748 AGCTGTGTATTTTGACAGAAGCC 59.496 43.478 0.00 0.00 41.90 4.35
78 79 4.756084 AGCTGTGTATTTTGACAGAAGC 57.244 40.909 0.00 1.76 41.90 3.86
79 80 4.913924 GCAAGCTGTGTATTTTGACAGAAG 59.086 41.667 0.00 0.00 41.90 2.85
80 81 4.580167 AGCAAGCTGTGTATTTTGACAGAA 59.420 37.500 0.00 0.00 41.90 3.02
81 82 4.136796 AGCAAGCTGTGTATTTTGACAGA 58.863 39.130 0.00 0.00 41.90 3.41
82 83 4.494350 AGCAAGCTGTGTATTTTGACAG 57.506 40.909 0.00 0.00 42.18 3.51
83 84 4.261572 GGAAGCAAGCTGTGTATTTTGACA 60.262 41.667 0.00 0.00 0.00 3.58
84 85 4.229876 GGAAGCAAGCTGTGTATTTTGAC 58.770 43.478 0.00 0.00 0.00 3.18
85 86 3.058293 CGGAAGCAAGCTGTGTATTTTGA 60.058 43.478 0.00 0.00 0.00 2.69
86 87 3.236816 CGGAAGCAAGCTGTGTATTTTG 58.763 45.455 0.00 0.00 0.00 2.44
87 88 3.559238 CGGAAGCAAGCTGTGTATTTT 57.441 42.857 0.00 0.00 0.00 1.82
102 103 2.353269 TGTGTGTGTGTTTTAGCGGAAG 59.647 45.455 0.00 0.00 0.00 3.46
103 104 2.096174 GTGTGTGTGTGTTTTAGCGGAA 59.904 45.455 0.00 0.00 0.00 4.30
104 105 1.666700 GTGTGTGTGTGTTTTAGCGGA 59.333 47.619 0.00 0.00 0.00 5.54
105 106 1.268335 GGTGTGTGTGTGTTTTAGCGG 60.268 52.381 0.00 0.00 0.00 5.52
106 107 1.668751 AGGTGTGTGTGTGTTTTAGCG 59.331 47.619 0.00 0.00 0.00 4.26
107 108 3.623960 TGTAGGTGTGTGTGTGTTTTAGC 59.376 43.478 0.00 0.00 0.00 3.09
108 109 5.747565 CATGTAGGTGTGTGTGTGTTTTAG 58.252 41.667 0.00 0.00 0.00 1.85
109 110 4.035792 GCATGTAGGTGTGTGTGTGTTTTA 59.964 41.667 0.00 0.00 0.00 1.52
110 111 3.181491 GCATGTAGGTGTGTGTGTGTTTT 60.181 43.478 0.00 0.00 0.00 2.43
111 112 2.357637 GCATGTAGGTGTGTGTGTGTTT 59.642 45.455 0.00 0.00 0.00 2.83
112 113 1.946768 GCATGTAGGTGTGTGTGTGTT 59.053 47.619 0.00 0.00 0.00 3.32
113 114 1.140852 AGCATGTAGGTGTGTGTGTGT 59.859 47.619 0.00 0.00 0.00 3.72
114 115 1.882912 AGCATGTAGGTGTGTGTGTG 58.117 50.000 0.00 0.00 0.00 3.82
115 116 2.158827 TGAAGCATGTAGGTGTGTGTGT 60.159 45.455 0.00 0.00 0.00 3.72
116 117 2.224079 GTGAAGCATGTAGGTGTGTGTG 59.776 50.000 0.00 0.00 0.00 3.82
117 118 2.494059 GTGAAGCATGTAGGTGTGTGT 58.506 47.619 0.00 0.00 0.00 3.72
118 119 1.460743 CGTGAAGCATGTAGGTGTGTG 59.539 52.381 0.00 0.00 0.00 3.82
119 120 1.795768 CGTGAAGCATGTAGGTGTGT 58.204 50.000 0.00 0.00 0.00 3.72
131 132 4.451652 GCAGAAGCCGCGTGAAGC 62.452 66.667 4.92 0.00 43.95 3.86
132 133 0.807667 ATAGCAGAAGCCGCGTGAAG 60.808 55.000 4.92 0.00 43.56 3.02
133 134 0.458260 TATAGCAGAAGCCGCGTGAA 59.542 50.000 4.92 0.00 43.56 3.18
134 135 0.673985 ATATAGCAGAAGCCGCGTGA 59.326 50.000 4.92 0.00 43.56 4.35
135 136 2.347697 TATATAGCAGAAGCCGCGTG 57.652 50.000 4.92 0.00 43.56 5.34
136 137 3.380479 TTTATATAGCAGAAGCCGCGT 57.620 42.857 4.92 0.00 43.56 6.01
137 138 3.926527 TGATTTATATAGCAGAAGCCGCG 59.073 43.478 0.00 0.00 43.56 6.46
138 139 5.728898 GCATGATTTATATAGCAGAAGCCGC 60.729 44.000 0.00 0.00 43.56 6.53
139 140 5.352293 TGCATGATTTATATAGCAGAAGCCG 59.648 40.000 0.00 0.00 43.56 5.52
140 141 6.748333 TGCATGATTTATATAGCAGAAGCC 57.252 37.500 0.00 0.00 43.56 4.35
184 185 5.465724 AGGTGTTCTCACGTTTTCTTATCAC 59.534 40.000 0.00 0.00 44.68 3.06
188 189 4.573201 CCAAGGTGTTCTCACGTTTTCTTA 59.427 41.667 4.03 0.00 46.11 2.10
191 192 2.681344 ACCAAGGTGTTCTCACGTTTTC 59.319 45.455 4.03 0.00 46.11 2.29
196 197 1.867233 CTGAACCAAGGTGTTCTCACG 59.133 52.381 5.61 0.00 43.96 4.35
251 252 9.538508 TTTTAAAACAGAGAGAGTAGGTGTTAC 57.461 33.333 0.00 0.00 31.19 2.50
273 274 9.582431 CCTTCGTAAGTTGAGTCATCTATTTTA 57.418 33.333 4.14 0.00 39.48 1.52
274 275 8.311836 TCCTTCGTAAGTTGAGTCATCTATTTT 58.688 33.333 4.14 0.00 39.48 1.82
275 276 7.837863 TCCTTCGTAAGTTGAGTCATCTATTT 58.162 34.615 4.14 0.00 39.48 1.40
276 277 7.406031 TCCTTCGTAAGTTGAGTCATCTATT 57.594 36.000 4.14 0.00 39.48 1.73
277 278 7.122948 ACTTCCTTCGTAAGTTGAGTCATCTAT 59.877 37.037 4.14 0.00 33.39 1.98
278 279 6.433404 ACTTCCTTCGTAAGTTGAGTCATCTA 59.567 38.462 4.14 0.00 33.39 1.98
279 280 5.244178 ACTTCCTTCGTAAGTTGAGTCATCT 59.756 40.000 0.00 0.00 33.39 2.90
280 281 5.471257 ACTTCCTTCGTAAGTTGAGTCATC 58.529 41.667 0.00 0.00 33.39 2.92
281 282 5.470047 ACTTCCTTCGTAAGTTGAGTCAT 57.530 39.130 0.00 0.00 33.39 3.06
282 283 4.931661 ACTTCCTTCGTAAGTTGAGTCA 57.068 40.909 0.00 0.00 33.39 3.41
283 284 7.886405 AAATACTTCCTTCGTAAGTTGAGTC 57.114 36.000 0.00 0.00 38.18 3.36
284 285 8.672823 AAAAATACTTCCTTCGTAAGTTGAGT 57.327 30.769 0.00 0.00 38.18 3.41
323 324 8.930760 GGTTATCACTGCATAGATTATGTCTTC 58.069 37.037 6.37 0.00 38.42 2.87
328 329 6.398095 TCCGGTTATCACTGCATAGATTATG 58.602 40.000 0.00 0.00 39.18 1.90
332 333 3.898123 ACTCCGGTTATCACTGCATAGAT 59.102 43.478 0.00 6.32 0.00 1.98
451 454 2.046314 CGGGCGGTGGTGAGAAAT 60.046 61.111 0.00 0.00 0.00 2.17
465 468 2.365635 ATGGAGGGTGAGGACGGG 60.366 66.667 0.00 0.00 0.00 5.28
468 471 0.984230 TGTTGATGGAGGGTGAGGAC 59.016 55.000 0.00 0.00 0.00 3.85
479 482 1.234615 GGTCCGGTGTGTGTTGATGG 61.235 60.000 0.00 0.00 0.00 3.51
482 485 2.368011 TGGGTCCGGTGTGTGTTGA 61.368 57.895 0.00 0.00 0.00 3.18
485 488 3.084646 TGTGGGTCCGGTGTGTGT 61.085 61.111 0.00 0.00 0.00 3.72
487 490 4.230002 CGTGTGGGTCCGGTGTGT 62.230 66.667 0.00 0.00 0.00 3.72
489 492 3.920196 GACGTGTGGGTCCGGTGT 61.920 66.667 0.00 0.00 0.00 4.16
490 493 3.918977 TGACGTGTGGGTCCGGTG 61.919 66.667 0.00 0.00 36.07 4.94
491 494 3.920196 GTGACGTGTGGGTCCGGT 61.920 66.667 0.00 0.00 36.07 5.28
514 517 1.269621 CCTTACCCGCGTCTTGGATAG 60.270 57.143 4.92 2.22 0.00 2.08
515 518 0.748450 CCTTACCCGCGTCTTGGATA 59.252 55.000 4.92 0.00 0.00 2.59
516 519 1.520666 CCTTACCCGCGTCTTGGAT 59.479 57.895 4.92 0.00 0.00 3.41
519 522 2.818274 GCCCTTACCCGCGTCTTG 60.818 66.667 4.92 0.00 0.00 3.02
558 561 4.501714 GACGGGTACGATGCGCCA 62.502 66.667 4.18 0.00 44.60 5.69
561 564 4.918129 CCGGACGGGTACGATGCG 62.918 72.222 4.74 0.00 44.60 4.73
611 614 3.152400 GCGGGGAGGGTACGATGT 61.152 66.667 0.00 0.00 0.00 3.06
669 675 1.453197 GGGCAGGGGTGGAATAACG 60.453 63.158 0.00 0.00 0.00 3.18
761 767 1.381463 GGAAGGGGAGCGGAGTACT 60.381 63.158 0.00 0.00 0.00 2.73
791 809 1.281566 GCACCGCGTTTCCCATTTTG 61.282 55.000 4.92 0.00 0.00 2.44
810 830 4.821589 GGCTCCCTTGAGACGCCG 62.822 72.222 0.00 0.00 41.42 6.46
819 839 1.527370 GCCTTATCACGGCTCCCTT 59.473 57.895 0.00 0.00 44.17 3.95
820 840 2.797278 CGCCTTATCACGGCTCCCT 61.797 63.158 0.00 0.00 45.37 4.20
867 888 3.435275 GGAGAGGGAAAAAGCAAGGAAT 58.565 45.455 0.00 0.00 0.00 3.01
885 906 2.843113 ACAATCAAGAAGGAGGAGGGAG 59.157 50.000 0.00 0.00 0.00 4.30
886 907 2.921221 ACAATCAAGAAGGAGGAGGGA 58.079 47.619 0.00 0.00 0.00 4.20
887 908 3.350833 CAACAATCAAGAAGGAGGAGGG 58.649 50.000 0.00 0.00 0.00 4.30
888 909 2.751806 GCAACAATCAAGAAGGAGGAGG 59.248 50.000 0.00 0.00 0.00 4.30
963 985 2.637025 CAGTTGGTTGTTCGCCGG 59.363 61.111 0.00 0.00 0.00 6.13
965 987 2.335011 GGCAGTTGGTTGTTCGCC 59.665 61.111 0.00 0.00 0.00 5.54
1428 1451 0.461961 CATTGGAGAGGTCGAGGTCC 59.538 60.000 0.00 0.00 0.00 4.46
1507 1530 3.726517 GCAGCGCGAAAGGCAGAA 61.727 61.111 12.10 0.00 43.84 3.02
1584 1607 2.320587 GCACCAGTTGAGCGTGAGG 61.321 63.158 0.00 0.00 0.00 3.86
1671 1701 0.839946 GGCTCACCATGGTGTAGGAT 59.160 55.000 37.49 3.66 45.55 3.24
1851 1882 6.455647 AGAAATTCACGTGAGAGACATGTAA 58.544 36.000 19.11 0.00 45.61 2.41
1878 1909 1.543871 GGGAAAACTGCCAGACCGTAA 60.544 52.381 0.00 0.00 0.00 3.18
1885 1916 1.604604 TCGAAAGGGAAAACTGCCAG 58.395 50.000 0.00 0.00 0.00 4.85
2042 2074 9.801873 GCATAGTCCTTGCAGATATTTTTAAAA 57.198 29.630 0.00 0.00 39.90 1.52
2043 2075 8.965819 TGCATAGTCCTTGCAGATATTTTTAAA 58.034 29.630 0.00 0.00 44.73 1.52
2056 2088 5.505173 AATGTACAATGCATAGTCCTTGC 57.495 39.130 0.00 0.00 40.55 4.01
2057 2089 7.087409 TGAAATGTACAATGCATAGTCCTTG 57.913 36.000 0.00 0.00 0.00 3.61
2058 2090 7.557358 TCATGAAATGTACAATGCATAGTCCTT 59.443 33.333 3.97 0.00 46.80 3.36
2059 2091 7.056006 TCATGAAATGTACAATGCATAGTCCT 58.944 34.615 3.97 0.00 46.80 3.85
2060 2092 7.263100 TCATGAAATGTACAATGCATAGTCC 57.737 36.000 3.97 0.00 46.80 3.85
2061 2093 8.562052 TGATCATGAAATGTACAATGCATAGTC 58.438 33.333 3.97 6.45 46.80 2.59
2062 2094 8.454570 TGATCATGAAATGTACAATGCATAGT 57.545 30.769 3.97 0.00 46.80 2.12
2063 2095 9.908152 AATGATCATGAAATGTACAATGCATAG 57.092 29.630 9.46 0.53 46.80 2.23
2065 2097 9.687210 GTAATGATCATGAAATGTACAATGCAT 57.313 29.630 9.46 0.00 46.80 3.96
2066 2098 8.136800 GGTAATGATCATGAAATGTACAATGCA 58.863 33.333 9.46 0.00 46.80 3.96
2067 2099 8.355169 AGGTAATGATCATGAAATGTACAATGC 58.645 33.333 9.46 0.00 46.80 3.56
2068 2100 9.888878 GAGGTAATGATCATGAAATGTACAATG 57.111 33.333 9.46 0.00 46.80 2.82
2069 2101 9.631257 TGAGGTAATGATCATGAAATGTACAAT 57.369 29.630 9.46 0.02 46.80 2.71
2072 2104 8.668510 AGTGAGGTAATGATCATGAAATGTAC 57.331 34.615 9.46 6.69 46.80 2.90
2074 2106 7.571919 AGAGTGAGGTAATGATCATGAAATGT 58.428 34.615 9.46 0.00 46.80 2.71
2076 2108 8.051535 ACAAGAGTGAGGTAATGATCATGAAAT 58.948 33.333 9.46 0.00 0.00 2.17
2077 2109 7.397221 ACAAGAGTGAGGTAATGATCATGAAA 58.603 34.615 9.46 0.00 0.00 2.69
2079 2111 6.550938 ACAAGAGTGAGGTAATGATCATGA 57.449 37.500 9.46 0.00 0.00 3.07
2094 2126 6.905027 CTGGTTCCCATCCTCACAAGAGTG 62.905 54.167 0.00 0.00 38.97 3.51
2098 2130 1.352352 ACTGGTTCCCATCCTCACAAG 59.648 52.381 0.00 0.00 30.82 3.16
2099 2131 1.444933 ACTGGTTCCCATCCTCACAA 58.555 50.000 0.00 0.00 30.82 3.33
2100 2132 2.187958 CTACTGGTTCCCATCCTCACA 58.812 52.381 0.00 0.00 30.82 3.58
2103 2135 3.371965 TGTACTACTGGTTCCCATCCTC 58.628 50.000 0.00 0.00 30.82 3.71
2104 2136 3.484953 TGTACTACTGGTTCCCATCCT 57.515 47.619 0.00 0.00 30.82 3.24
2105 2137 4.772886 AATGTACTACTGGTTCCCATCC 57.227 45.455 0.00 0.00 30.82 3.51
2106 2138 8.621286 CAATAAAATGTACTACTGGTTCCCATC 58.379 37.037 0.00 0.00 30.82 3.51
2107 2139 7.068226 GCAATAAAATGTACTACTGGTTCCCAT 59.932 37.037 0.00 0.00 30.82 4.00
2108 2140 6.376018 GCAATAAAATGTACTACTGGTTCCCA 59.624 38.462 0.00 0.00 0.00 4.37
2109 2141 6.602009 AGCAATAAAATGTACTACTGGTTCCC 59.398 38.462 0.00 0.00 0.00 3.97
2110 2142 7.625828 AGCAATAAAATGTACTACTGGTTCC 57.374 36.000 0.00 0.00 0.00 3.62
2129 2161 9.921637 TTCTTTGACCGAAATTAATTAAGCAAT 57.078 25.926 0.01 0.00 0.00 3.56
2130 2162 9.751542 TTTCTTTGACCGAAATTAATTAAGCAA 57.248 25.926 0.01 0.39 0.00 3.91
2131 2163 9.751542 TTTTCTTTGACCGAAATTAATTAAGCA 57.248 25.926 0.01 0.00 31.17 3.91
2140 2172 9.040939 CAAAAGGTATTTTCTTTGACCGAAATT 57.959 29.630 0.00 0.00 36.47 1.82
2141 2173 8.417884 TCAAAAGGTATTTTCTTTGACCGAAAT 58.582 29.630 0.00 0.00 36.47 2.17
2142 2174 7.773149 TCAAAAGGTATTTTCTTTGACCGAAA 58.227 30.769 0.00 0.00 36.47 3.46
2143 2175 7.336161 TCAAAAGGTATTTTCTTTGACCGAA 57.664 32.000 0.00 0.00 36.47 4.30
2144 2176 6.016610 CCTCAAAAGGTATTTTCTTTGACCGA 60.017 38.462 0.00 0.00 36.47 4.69
2145 2177 6.016610 TCCTCAAAAGGTATTTTCTTTGACCG 60.017 38.462 0.00 0.00 43.82 4.79
2146 2178 7.284919 TCCTCAAAAGGTATTTTCTTTGACC 57.715 36.000 0.00 0.00 43.82 4.02
2147 2179 7.814587 CCATCCTCAAAAGGTATTTTCTTTGAC 59.185 37.037 0.00 0.00 43.82 3.18
2148 2180 7.039082 CCCATCCTCAAAAGGTATTTTCTTTGA 60.039 37.037 0.00 0.00 43.82 2.69
2149 2181 7.039082 TCCCATCCTCAAAAGGTATTTTCTTTG 60.039 37.037 0.00 0.00 43.82 2.77
2153 2185 6.850752 TTCCCATCCTCAAAAGGTATTTTC 57.149 37.500 0.00 0.00 43.82 2.29
2189 2229 4.072131 GTTTGTCTATTTGGCACCTCAGA 58.928 43.478 0.00 0.00 0.00 3.27
2190 2230 3.820467 TGTTTGTCTATTTGGCACCTCAG 59.180 43.478 0.00 0.00 0.00 3.35
2247 2287 4.259356 CAGTCTTTGGAGATCTGCAATGA 58.741 43.478 29.67 29.67 40.52 2.57
2365 2405 1.331756 CCCGTAGTGATTTGCTGCATC 59.668 52.381 1.84 0.00 0.00 3.91
2446 2486 8.928448 AGAGTTGAGCCTAATAGTGATCAAATA 58.072 33.333 0.00 0.00 0.00 1.40
2489 2532 8.902540 ATATTAAAATCCTAGCGACATCAACA 57.097 30.769 0.00 0.00 0.00 3.33
2493 2536 8.703604 TGCTATATTAAAATCCTAGCGACATC 57.296 34.615 10.31 0.00 38.07 3.06
2532 2593 8.248253 ACTACTTGTTTCACATCGACATGTATA 58.752 33.333 0.00 0.00 41.69 1.47
2580 2649 5.178809 ACGATACTGGTAAACTTTGTTGAGC 59.821 40.000 0.00 0.00 0.00 4.26
2594 2663 3.054655 AGTTTATTGGCCACGATACTGGT 60.055 43.478 3.88 0.00 33.30 4.00
2652 2722 3.059597 GTGACATTTCGACAGGTTGACAG 60.060 47.826 0.00 0.00 0.00 3.51
2760 2830 2.366590 TGCCCAGATGATGCTACTACAG 59.633 50.000 0.00 0.00 0.00 2.74
2868 2938 2.238521 TCCAATTTCAGGGTCTGCAAC 58.761 47.619 0.00 0.00 0.00 4.17
2970 3040 5.514169 AGATCAGTATCTGTCACTCCTGAA 58.486 41.667 0.00 0.00 41.08 3.02
3076 3146 0.471617 GGGCATGAGCTAGTGATGGT 59.528 55.000 0.00 0.00 41.70 3.55
3103 3173 4.953579 ACAGGACTCCATTCTTAGAGAGAC 59.046 45.833 4.34 0.00 33.02 3.36
3265 3339 2.158841 GCGAGAAACAGTTAATTCGGCA 59.841 45.455 12.97 0.00 33.22 5.69
3310 3384 4.012374 TGCAAAGGAAAGATCTCATCACC 58.988 43.478 0.00 0.00 0.00 4.02
3328 3402 2.358898 GACAGAGCTTTCAAACCTGCAA 59.641 45.455 0.00 0.00 0.00 4.08
3512 3586 6.051717 CAGGTTGATAGACTCTAACATTGGG 58.948 44.000 0.00 0.00 0.00 4.12
3519 3593 6.829298 CAGTAGGACAGGTTGATAGACTCTAA 59.171 42.308 0.00 0.00 0.00 2.10
3587 3661 0.317269 CCAGTGTGTTCAGCTTTGCG 60.317 55.000 0.00 0.00 0.00 4.85
3788 3870 5.465390 CACGGTATGACAAGTTCTTTTCTCA 59.535 40.000 0.00 0.00 0.00 3.27
3796 3878 3.034721 TGGACACGGTATGACAAGTTC 57.965 47.619 0.00 0.00 0.00 3.01
3826 3908 7.922837 TCTGTCATGATGTAGCAATGTTAATG 58.077 34.615 0.00 0.00 0.00 1.90
3871 3953 1.971357 AGAAGTCCAATGTCGGTGACT 59.029 47.619 0.00 0.00 39.66 3.41
4210 4292 1.677576 TCAAAGCTGCAGTTCAGTTGG 59.322 47.619 16.64 0.00 44.66 3.77
4229 4311 7.595502 ACGCTTACTATTAGACATTATGCTGTC 59.404 37.037 0.00 0.00 44.78 3.51
4280 4362 0.384725 GTTGCCATATGTCGCATCGC 60.385 55.000 7.37 0.00 34.35 4.58
4370 4453 7.464577 CGTTCTACACCATCATGTTCATGTAAG 60.465 40.741 11.73 5.34 33.85 2.34
4371 4454 6.312672 CGTTCTACACCATCATGTTCATGTAA 59.687 38.462 11.73 0.00 33.85 2.41
4418 4508 3.050619 GTCTGTTCTGTACACAACTCCG 58.949 50.000 14.06 4.51 32.10 4.63
4442 4532 8.773645 ACATACATATACAACATTGTTCCGATG 58.226 33.333 1.98 4.32 42.35 3.84
4586 4684 1.458445 CGAACTGTGCACACTCTCATG 59.542 52.381 17.42 6.97 0.00 3.07
4637 4735 1.101049 AACACAGGCCAAACACCTCG 61.101 55.000 5.01 0.00 34.42 4.63
4746 4873 9.817809 GGAAAAGAAGAAAGAACAATTAACCTT 57.182 29.630 0.00 0.00 0.00 3.50
4774 4905 4.275196 ACAAACGTCGCAGCTCTATCTATA 59.725 41.667 0.00 0.00 0.00 1.31
4808 4939 3.907260 ATGTGGCGTGGCAGGACAG 62.907 63.158 17.35 0.00 0.00 3.51
4809 4940 3.952508 ATGTGGCGTGGCAGGACA 61.953 61.111 12.49 12.49 0.00 4.02
4811 4942 3.899981 GACATGTGGCGTGGCAGGA 62.900 63.158 12.03 0.00 0.00 3.86
4825 6912 4.219392 TCCTAGATCAGATTGGGGACAT 57.781 45.455 0.00 0.00 42.32 3.06
4837 6924 5.960811 AGTGGATGAGAACTTTCCTAGATCA 59.039 40.000 0.00 0.00 0.00 2.92
4852 7129 3.853355 AAGATGGCCTAAGTGGATGAG 57.147 47.619 3.32 0.00 38.35 2.90
4868 7145 9.190317 GATTTTTCTACCCTATGAACCAAAGAT 57.810 33.333 0.00 0.00 0.00 2.40
4869 7146 8.167392 TGATTTTTCTACCCTATGAACCAAAGA 58.833 33.333 0.00 0.00 0.00 2.52
4873 7150 8.998814 TCTATGATTTTTCTACCCTATGAACCA 58.001 33.333 0.00 0.00 0.00 3.67
4988 7271 6.715280 AGCCTAGACTCAATGAAAAGAATCA 58.285 36.000 0.00 0.00 0.00 2.57
5030 7313 8.298729 GGAATTCTTCCCATTCTCTACATTTT 57.701 34.615 5.23 0.00 44.30 1.82
5046 7329 2.304751 TTCCTACGGCGGAATTCTTC 57.695 50.000 13.24 0.00 38.12 2.87
5055 7338 5.350640 GGAATATAATCCTTTTCCTACGGCG 59.649 44.000 4.80 4.80 35.74 6.46
5056 7339 6.738832 GGAATATAATCCTTTTCCTACGGC 57.261 41.667 0.00 0.00 35.74 5.68
5068 7351 8.456471 GCCCGTTTGTTTATAGGAATATAATCC 58.544 37.037 0.00 0.00 39.96 3.01
5073 7356 6.204108 CGAAGCCCGTTTGTTTATAGGAATAT 59.796 38.462 0.00 0.00 0.00 1.28
5082 7365 2.836262 TCTTCGAAGCCCGTTTGTTTA 58.164 42.857 20.56 0.00 39.75 2.01
5086 7369 2.766970 TTTTCTTCGAAGCCCGTTTG 57.233 45.000 20.56 0.00 39.75 2.93
5117 7400 8.503573 CCTAGGAAAAGGTTTAGGATAGGATTT 58.496 37.037 1.05 0.00 35.71 2.17
5158 7441 2.034878 AGAATGTCTGATAGCGCAGGA 58.965 47.619 11.47 0.00 36.55 3.86
5159 7442 2.035704 AGAGAATGTCTGATAGCGCAGG 59.964 50.000 11.47 0.00 36.55 4.85
5160 7443 3.243334 TGAGAGAATGTCTGATAGCGCAG 60.243 47.826 11.47 0.00 34.71 5.18
5161 7444 2.689983 TGAGAGAATGTCTGATAGCGCA 59.310 45.455 11.47 0.00 34.71 6.09
5162 7445 3.361794 TGAGAGAATGTCTGATAGCGC 57.638 47.619 0.00 0.00 34.71 5.92
5164 7447 9.709495 ATAGAATTTGAGAGAATGTCTGATAGC 57.291 33.333 0.00 0.00 34.71 2.97
5169 7452 8.428063 ACCCTATAGAATTTGAGAGAATGTCTG 58.572 37.037 0.00 0.00 34.71 3.51
5170 7453 8.560124 ACCCTATAGAATTTGAGAGAATGTCT 57.440 34.615 0.00 0.00 38.71 3.41
5171 7454 9.699703 GTACCCTATAGAATTTGAGAGAATGTC 57.300 37.037 0.00 0.00 0.00 3.06
5187 7470 9.344772 GATGTCATGTCCTATAGTACCCTATAG 57.655 40.741 8.98 8.98 46.92 1.31
5189 7472 7.709601 TGATGTCATGTCCTATAGTACCCTAT 58.290 38.462 0.00 0.00 37.62 2.57
5230 7513 7.257722 GCGGGATTCTCAAAATGAAAAATAGA 58.742 34.615 0.00 0.00 0.00 1.98
5233 7516 4.864247 CGCGGGATTCTCAAAATGAAAAAT 59.136 37.500 0.00 0.00 0.00 1.82
5236 7519 3.078097 TCGCGGGATTCTCAAAATGAAA 58.922 40.909 6.13 0.00 0.00 2.69
5245 7529 2.541762 CTCTTTGATTCGCGGGATTCTC 59.458 50.000 20.56 11.45 0.00 2.87
5253 7537 1.425428 GTGGGCTCTTTGATTCGCG 59.575 57.895 0.00 0.00 0.00 5.87
5254 7538 1.803289 GGTGGGCTCTTTGATTCGC 59.197 57.895 0.00 0.00 0.00 4.70
5266 7550 1.525077 TAAATGGCGATCGGTGGGC 60.525 57.895 18.30 0.00 0.00 5.36
5267 7551 1.164041 GGTAAATGGCGATCGGTGGG 61.164 60.000 18.30 0.00 0.00 4.61
5270 7554 2.116827 TTTGGTAAATGGCGATCGGT 57.883 45.000 18.30 0.00 0.00 4.69
5271 7555 2.789779 CGTTTTGGTAAATGGCGATCGG 60.790 50.000 18.30 0.00 0.00 4.18
5272 7556 2.094575 TCGTTTTGGTAAATGGCGATCG 59.905 45.455 11.69 11.69 32.28 3.69
5273 7557 3.750639 TCGTTTTGGTAAATGGCGATC 57.249 42.857 0.00 0.00 32.28 3.69
5291 7575 5.106555 GGATGCAGGTATTCAATGGTATTCG 60.107 44.000 0.00 0.00 0.00 3.34
5300 7584 2.711009 CCCCTAGGATGCAGGTATTCAA 59.289 50.000 11.48 0.00 33.47 2.69
5306 7590 1.619363 TTGCCCCTAGGATGCAGGT 60.619 57.895 20.68 0.00 36.21 4.00
5308 7592 0.257039 AAGTTGCCCCTAGGATGCAG 59.743 55.000 20.68 1.11 36.21 4.41
5315 7599 2.028385 ACTACGTTGAAGTTGCCCCTAG 60.028 50.000 3.44 0.00 0.00 3.02
5366 7650 5.939296 TCATGAACAGAGTCAAACATGCATA 59.061 36.000 0.00 0.00 36.23 3.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.