Multiple sequence alignment - TraesCS5A01G150600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G150600 chr5A 100.000 4646 0 0 1 4646 328544716 328549361 0.000000e+00 8580.0
1 TraesCS5A01G150600 chr5A 92.556 712 40 7 3866 4569 426300768 426300062 0.000000e+00 1009.0
2 TraesCS5A01G150600 chr5A 92.553 94 7 0 3682 3775 273458472 273458379 8.110000e-28 135.0
3 TraesCS5A01G150600 chr5D 92.910 3921 152 53 779 4639 243994330 243998184 0.000000e+00 5585.0
4 TraesCS5A01G150600 chr5D 86.600 1888 203 23 1763 3618 544457377 544459246 0.000000e+00 2039.0
5 TraesCS5A01G150600 chr5D 88.856 1023 109 4 1840 2858 544477785 544478806 0.000000e+00 1253.0
6 TraesCS5A01G150600 chr5D 86.326 841 91 10 2849 3680 544478913 544479738 0.000000e+00 894.0
7 TraesCS5A01G150600 chr5D 82.058 797 97 17 2061 2846 544392934 544392173 5.070000e-179 638.0
8 TraesCS5A01G150600 chr5D 85.278 557 73 5 2948 3501 544371295 544370745 2.430000e-157 566.0
9 TraesCS5A01G150600 chr5D 74.253 1305 274 49 1925 3182 543835729 543837018 4.180000e-135 492.0
10 TraesCS5A01G150600 chr5D 76.584 884 184 18 1952 2827 544693341 544694209 9.110000e-127 464.0
11 TraesCS5A01G150600 chr5D 95.385 65 3 0 3773 3837 376660745 376660809 2.290000e-18 104.0
12 TraesCS5A01G150600 chr4A 93.436 1889 109 9 1804 3680 624140980 624142865 0.000000e+00 2787.0
13 TraesCS5A01G150600 chr4A 88.883 1907 177 21 1802 3680 624227935 624229834 0.000000e+00 2314.0
14 TraesCS5A01G150600 chr4A 86.095 1877 218 19 1834 3680 624342813 624344676 0.000000e+00 1980.0
15 TraesCS5A01G150600 chr4A 88.141 995 112 6 1853 2843 624355879 624356871 0.000000e+00 1179.0
16 TraesCS5A01G150600 chr4A 92.546 711 43 7 3866 4569 115287735 115288442 0.000000e+00 1011.0
17 TraesCS5A01G150600 chr4A 92.405 711 43 8 3866 4569 208830496 208829790 0.000000e+00 1003.0
18 TraesCS5A01G150600 chr4A 87.155 724 78 5 2849 3565 624362132 624362847 0.000000e+00 808.0
19 TraesCS5A01G150600 chr4A 82.441 467 42 15 2643 3081 624263073 624263527 5.680000e-99 372.0
20 TraesCS5A01G150600 chr4A 90.230 174 16 1 543 715 467292647 467292820 4.680000e-55 226.0
21 TraesCS5A01G150600 chr4A 82.000 250 23 11 1457 1684 624227490 624227739 4.740000e-45 193.0
22 TraesCS5A01G150600 chr4A 84.034 119 16 2 843 958 624050937 624051055 1.370000e-20 111.0
23 TraesCS5A01G150600 chr4A 91.935 62 5 0 4574 4635 7828826 7828887 2.300000e-13 87.9
24 TraesCS5A01G150600 chr5B 87.893 1908 181 32 1802 3680 686541775 686543661 0.000000e+00 2198.0
25 TraesCS5A01G150600 chr5B 81.598 1402 198 37 2254 3637 686474019 686472660 0.000000e+00 1105.0
26 TraesCS5A01G150600 chr5B 92.201 718 44 9 3866 4576 153897071 153897783 0.000000e+00 1005.0
27 TraesCS5A01G150600 chr5B 98.664 524 5 2 259 782 648738240 648738761 0.000000e+00 928.0
28 TraesCS5A01G150600 chr5B 84.722 144 18 3 817 958 686456685 686456826 1.740000e-29 141.0
29 TraesCS5A01G150600 chrUn 87.875 1435 134 17 1452 2846 48437098 48438532 0.000000e+00 1650.0
30 TraesCS5A01G150600 chrUn 84.358 716 94 13 2948 3655 48438676 48439381 0.000000e+00 686.0
31 TraesCS5A01G150600 chrUn 84.536 388 26 17 425 786 326758259 326757880 2.060000e-93 353.0
32 TraesCS5A01G150600 chrUn 84.399 391 27 17 419 783 381260160 381260542 2.060000e-93 353.0
33 TraesCS5A01G150600 chr7A 92.926 721 42 6 3855 4569 216731650 216730933 0.000000e+00 1040.0
34 TraesCS5A01G150600 chr4D 92.466 730 45 6 3855 4575 175790419 175791147 0.000000e+00 1035.0
35 TraesCS5A01G150600 chr4D 90.909 242 18 4 543 782 20328769 20329008 5.800000e-84 322.0
36 TraesCS5A01G150600 chr4D 91.489 94 8 0 3682 3775 252510186 252510279 3.770000e-26 130.0
37 TraesCS5A01G150600 chr4D 91.489 94 8 0 3682 3775 351731852 351731945 3.770000e-26 130.0
38 TraesCS5A01G150600 chr4D 90.769 65 6 0 4574 4638 348134312 348134248 2.300000e-13 87.9
39 TraesCS5A01G150600 chr1A 92.424 726 44 8 3855 4573 581434877 581435598 0.000000e+00 1026.0
40 TraesCS5A01G150600 chr1A 75.082 919 205 21 1934 2840 569459092 569458186 1.560000e-109 407.0
41 TraesCS5A01G150600 chr1A 98.077 156 1 2 259 414 561620329 561620482 2.130000e-68 270.0
42 TraesCS5A01G150600 chr4B 91.504 718 42 11 3866 4576 563222243 563222948 0.000000e+00 970.0
43 TraesCS5A01G150600 chr3B 90.897 725 54 7 3855 4572 354030657 354031376 0.000000e+00 963.0
44 TraesCS5A01G150600 chr3B 83.636 385 29 17 425 783 168305684 168306060 9.640000e-87 331.0
45 TraesCS5A01G150600 chr3D 88.649 555 26 20 259 782 208844856 208845404 3.920000e-180 641.0
46 TraesCS5A01G150600 chr3D 93.774 257 14 2 3 258 8543779 8544034 7.290000e-103 385.0
47 TraesCS5A01G150600 chr3D 92.424 66 5 0 4574 4639 60546285 60546220 1.380000e-15 95.3
48 TraesCS5A01G150600 chr3D 92.308 65 5 0 4574 4638 199694708 199694772 4.950000e-15 93.5
49 TraesCS5A01G150600 chr3D 90.769 65 6 0 4574 4638 237090416 237090352 2.300000e-13 87.9
50 TraesCS5A01G150600 chr6B 86.347 542 38 12 268 783 388073184 388072653 4.060000e-155 558.0
51 TraesCS5A01G150600 chr6B 83.854 384 28 17 425 782 600598613 600598238 7.450000e-88 335.0
52 TraesCS5A01G150600 chr6B 92.553 94 7 0 3682 3775 635043941 635044034 8.110000e-28 135.0
53 TraesCS5A01G150600 chr7B 83.243 555 31 15 272 783 263156052 263156587 1.970000e-123 453.0
54 TraesCS5A01G150600 chr7B 93.411 258 11 5 2 258 704474936 704475188 1.220000e-100 377.0
55 TraesCS5A01G150600 chr7B 88.148 135 10 1 263 397 253910994 253911122 6.220000e-34 156.0
56 TraesCS5A01G150600 chr7B 86.567 67 9 0 3775 3841 323200939 323200873 1.790000e-09 75.0
57 TraesCS5A01G150600 chr2B 98.450 258 3 1 1 258 770712800 770712544 1.970000e-123 453.0
58 TraesCS5A01G150600 chr2B 83.763 388 29 17 425 786 623519137 623518758 2.070000e-88 337.0
59 TraesCS5A01G150600 chr2B 93.846 65 4 0 4574 4638 555093237 555093173 1.060000e-16 99.0
60 TraesCS5A01G150600 chr7D 94.961 258 11 2 2 258 573795259 573795515 2.010000e-108 403.0
61 TraesCS5A01G150600 chr7D 91.489 94 8 0 3682 3775 21251530 21251437 3.770000e-26 130.0
62 TraesCS5A01G150600 chr7D 91.489 94 8 0 3682 3775 403413485 403413578 3.770000e-26 130.0
63 TraesCS5A01G150600 chr2D 87.234 329 30 7 455 782 633233937 633234254 9.500000e-97 364.0
64 TraesCS5A01G150600 chr2D 90.769 65 6 0 4574 4638 246397888 246397824 2.300000e-13 87.9
65 TraesCS5A01G150600 chr1B 97.927 193 4 0 266 458 372095341 372095149 7.450000e-88 335.0
66 TraesCS5A01G150600 chr3A 97.006 167 4 1 264 429 10625069 10625235 3.540000e-71 279.0
67 TraesCS5A01G150600 chr3A 94.400 125 4 3 667 790 10625476 10625598 6.140000e-44 189.0
68 TraesCS5A01G150600 chr2A 99.329 149 1 0 266 414 37024389 37024241 2.130000e-68 270.0
69 TraesCS5A01G150600 chr2A 92.308 65 5 0 4574 4638 365316921 365316857 4.950000e-15 93.5
70 TraesCS5A01G150600 chr6D 92.473 93 7 0 3683 3775 129054454 129054546 2.920000e-27 134.0
71 TraesCS5A01G150600 chr6D 91.489 94 8 0 3682 3775 333315528 333315621 3.770000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G150600 chr5A 328544716 328549361 4645 False 8580.0 8580 100.0000 1 4646 1 chr5A.!!$F1 4645
1 TraesCS5A01G150600 chr5A 426300062 426300768 706 True 1009.0 1009 92.5560 3866 4569 1 chr5A.!!$R2 703
2 TraesCS5A01G150600 chr5D 243994330 243998184 3854 False 5585.0 5585 92.9100 779 4639 1 chr5D.!!$F1 3860
3 TraesCS5A01G150600 chr5D 544457377 544459246 1869 False 2039.0 2039 86.6000 1763 3618 1 chr5D.!!$F4 1855
4 TraesCS5A01G150600 chr5D 544477785 544479738 1953 False 1073.5 1253 87.5910 1840 3680 2 chr5D.!!$F6 1840
5 TraesCS5A01G150600 chr5D 544392173 544392934 761 True 638.0 638 82.0580 2061 2846 1 chr5D.!!$R2 785
6 TraesCS5A01G150600 chr5D 544370745 544371295 550 True 566.0 566 85.2780 2948 3501 1 chr5D.!!$R1 553
7 TraesCS5A01G150600 chr5D 543835729 543837018 1289 False 492.0 492 74.2530 1925 3182 1 chr5D.!!$F3 1257
8 TraesCS5A01G150600 chr5D 544693341 544694209 868 False 464.0 464 76.5840 1952 2827 1 chr5D.!!$F5 875
9 TraesCS5A01G150600 chr4A 624140980 624142865 1885 False 2787.0 2787 93.4360 1804 3680 1 chr4A.!!$F5 1876
10 TraesCS5A01G150600 chr4A 624342813 624344676 1863 False 1980.0 1980 86.0950 1834 3680 1 chr4A.!!$F7 1846
11 TraesCS5A01G150600 chr4A 624227490 624229834 2344 False 1253.5 2314 85.4415 1457 3680 2 chr4A.!!$F10 2223
12 TraesCS5A01G150600 chr4A 624355879 624356871 992 False 1179.0 1179 88.1410 1853 2843 1 chr4A.!!$F8 990
13 TraesCS5A01G150600 chr4A 115287735 115288442 707 False 1011.0 1011 92.5460 3866 4569 1 chr4A.!!$F2 703
14 TraesCS5A01G150600 chr4A 208829790 208830496 706 True 1003.0 1003 92.4050 3866 4569 1 chr4A.!!$R1 703
15 TraesCS5A01G150600 chr4A 624362132 624362847 715 False 808.0 808 87.1550 2849 3565 1 chr4A.!!$F9 716
16 TraesCS5A01G150600 chr5B 686541775 686543661 1886 False 2198.0 2198 87.8930 1802 3680 1 chr5B.!!$F4 1878
17 TraesCS5A01G150600 chr5B 686472660 686474019 1359 True 1105.0 1105 81.5980 2254 3637 1 chr5B.!!$R1 1383
18 TraesCS5A01G150600 chr5B 153897071 153897783 712 False 1005.0 1005 92.2010 3866 4576 1 chr5B.!!$F1 710
19 TraesCS5A01G150600 chr5B 648738240 648738761 521 False 928.0 928 98.6640 259 782 1 chr5B.!!$F2 523
20 TraesCS5A01G150600 chrUn 48437098 48439381 2283 False 1168.0 1650 86.1165 1452 3655 2 chrUn.!!$F2 2203
21 TraesCS5A01G150600 chr7A 216730933 216731650 717 True 1040.0 1040 92.9260 3855 4569 1 chr7A.!!$R1 714
22 TraesCS5A01G150600 chr4D 175790419 175791147 728 False 1035.0 1035 92.4660 3855 4575 1 chr4D.!!$F2 720
23 TraesCS5A01G150600 chr1A 581434877 581435598 721 False 1026.0 1026 92.4240 3855 4573 1 chr1A.!!$F2 718
24 TraesCS5A01G150600 chr1A 569458186 569459092 906 True 407.0 407 75.0820 1934 2840 1 chr1A.!!$R1 906
25 TraesCS5A01G150600 chr4B 563222243 563222948 705 False 970.0 970 91.5040 3866 4576 1 chr4B.!!$F1 710
26 TraesCS5A01G150600 chr3B 354030657 354031376 719 False 963.0 963 90.8970 3855 4572 1 chr3B.!!$F2 717
27 TraesCS5A01G150600 chr3D 208844856 208845404 548 False 641.0 641 88.6490 259 782 1 chr3D.!!$F3 523
28 TraesCS5A01G150600 chr6B 388072653 388073184 531 True 558.0 558 86.3470 268 783 1 chr6B.!!$R1 515
29 TraesCS5A01G150600 chr7B 263156052 263156587 535 False 453.0 453 83.2430 272 783 1 chr7B.!!$F2 511
30 TraesCS5A01G150600 chr3A 10625069 10625598 529 False 234.0 279 95.7030 264 790 2 chr3A.!!$F1 526

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
41 42 0.039618 ATCCCGGTTTTGGCAGTCAT 59.960 50.0 0.00 0.0 0.0 3.06 F
953 1022 0.322456 TCATTCCAAGCCTTGTCGGG 60.322 55.0 3.37 0.0 0.0 5.14 F
1308 1377 0.383949 TGGGTTCAAAGTTTCGCTGC 59.616 50.0 0.00 0.0 0.0 5.25 F
1638 1729 1.123077 TGCAAGTATCAGAGGGCGAT 58.877 50.0 0.00 0.0 0.0 4.58 F
3400 3872 1.257743 TAGCAGCTCCGAGAACAAGT 58.742 50.0 0.00 0.0 0.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1308 1377 0.318614 AAAACAAAGTCATGGCGGCG 60.319 50.000 0.51 0.51 0.00 6.46 R
2405 2679 0.412244 TGGAGCACACTAGGGTAGGT 59.588 55.000 0.00 0.00 0.00 3.08 R
3195 3660 2.270986 GCTCCAAGTGTGGGCAAGG 61.271 63.158 0.00 0.00 46.01 3.61 R
3554 4026 1.804151 CCTTGCGTGGAAATCTCGAAA 59.196 47.619 0.00 0.00 0.00 3.46 R
4605 5150 1.552792 TGGTACATCGAGATTGTGCCA 59.447 47.619 19.55 19.55 43.96 4.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 2.453983 CATGTTTGCAATCCCGGTTT 57.546 45.000 0.00 0.00 0.00 3.27
32 33 2.765122 CATGTTTGCAATCCCGGTTTT 58.235 42.857 0.00 0.00 0.00 2.43
33 34 2.231215 TGTTTGCAATCCCGGTTTTG 57.769 45.000 0.00 4.88 0.00 2.44
34 35 1.202580 TGTTTGCAATCCCGGTTTTGG 60.203 47.619 13.63 0.00 0.00 3.28
35 36 0.250081 TTTGCAATCCCGGTTTTGGC 60.250 50.000 13.63 5.74 0.00 4.52
36 37 1.402896 TTGCAATCCCGGTTTTGGCA 61.403 50.000 13.63 8.05 0.00 4.92
37 38 1.079888 GCAATCCCGGTTTTGGCAG 60.080 57.895 13.63 0.00 0.00 4.85
38 39 1.815817 GCAATCCCGGTTTTGGCAGT 61.816 55.000 13.63 0.00 0.00 4.40
39 40 0.243636 CAATCCCGGTTTTGGCAGTC 59.756 55.000 0.00 0.00 0.00 3.51
40 41 0.178975 AATCCCGGTTTTGGCAGTCA 60.179 50.000 0.00 0.00 0.00 3.41
41 42 0.039618 ATCCCGGTTTTGGCAGTCAT 59.960 50.000 0.00 0.00 0.00 3.06
42 43 0.693622 TCCCGGTTTTGGCAGTCATA 59.306 50.000 0.00 0.00 0.00 2.15
43 44 1.074084 TCCCGGTTTTGGCAGTCATAA 59.926 47.619 0.00 0.00 0.00 1.90
44 45 1.889829 CCCGGTTTTGGCAGTCATAAA 59.110 47.619 0.00 0.00 0.00 1.40
45 46 2.094752 CCCGGTTTTGGCAGTCATAAAG 60.095 50.000 0.00 0.00 0.00 1.85
46 47 2.817258 CCGGTTTTGGCAGTCATAAAGA 59.183 45.455 0.00 0.00 0.00 2.52
60 61 5.461526 GTCATAAAGACAAGCCAAAACTCC 58.538 41.667 0.00 0.00 46.77 3.85
61 62 5.241728 GTCATAAAGACAAGCCAAAACTCCT 59.758 40.000 0.00 0.00 46.77 3.69
62 63 5.833131 TCATAAAGACAAGCCAAAACTCCTT 59.167 36.000 0.00 0.00 0.00 3.36
63 64 4.655762 AAAGACAAGCCAAAACTCCTTC 57.344 40.909 0.00 0.00 0.00 3.46
64 65 3.297134 AGACAAGCCAAAACTCCTTCA 57.703 42.857 0.00 0.00 0.00 3.02
65 66 3.837355 AGACAAGCCAAAACTCCTTCAT 58.163 40.909 0.00 0.00 0.00 2.57
66 67 4.985538 AGACAAGCCAAAACTCCTTCATA 58.014 39.130 0.00 0.00 0.00 2.15
67 68 4.762251 AGACAAGCCAAAACTCCTTCATAC 59.238 41.667 0.00 0.00 0.00 2.39
68 69 4.729868 ACAAGCCAAAACTCCTTCATACT 58.270 39.130 0.00 0.00 0.00 2.12
69 70 5.140454 ACAAGCCAAAACTCCTTCATACTT 58.860 37.500 0.00 0.00 0.00 2.24
70 71 5.598417 ACAAGCCAAAACTCCTTCATACTTT 59.402 36.000 0.00 0.00 0.00 2.66
71 72 6.098266 ACAAGCCAAAACTCCTTCATACTTTT 59.902 34.615 0.00 0.00 0.00 2.27
72 73 6.332735 AGCCAAAACTCCTTCATACTTTTC 57.667 37.500 0.00 0.00 0.00 2.29
73 74 5.243954 AGCCAAAACTCCTTCATACTTTTCC 59.756 40.000 0.00 0.00 0.00 3.13
74 75 5.566826 GCCAAAACTCCTTCATACTTTTCCC 60.567 44.000 0.00 0.00 0.00 3.97
75 76 5.775195 CCAAAACTCCTTCATACTTTTCCCT 59.225 40.000 0.00 0.00 0.00 4.20
76 77 6.294731 CCAAAACTCCTTCATACTTTTCCCTG 60.295 42.308 0.00 0.00 0.00 4.45
77 78 5.584551 AACTCCTTCATACTTTTCCCTGT 57.415 39.130 0.00 0.00 0.00 4.00
78 79 5.584551 ACTCCTTCATACTTTTCCCTGTT 57.415 39.130 0.00 0.00 0.00 3.16
79 80 5.953571 ACTCCTTCATACTTTTCCCTGTTT 58.046 37.500 0.00 0.00 0.00 2.83
80 81 7.086685 ACTCCTTCATACTTTTCCCTGTTTA 57.913 36.000 0.00 0.00 0.00 2.01
81 82 7.523415 ACTCCTTCATACTTTTCCCTGTTTAA 58.477 34.615 0.00 0.00 0.00 1.52
82 83 8.002459 ACTCCTTCATACTTTTCCCTGTTTAAA 58.998 33.333 0.00 0.00 0.00 1.52
83 84 8.950007 TCCTTCATACTTTTCCCTGTTTAAAT 57.050 30.769 0.00 0.00 0.00 1.40
84 85 9.020731 TCCTTCATACTTTTCCCTGTTTAAATC 57.979 33.333 0.00 0.00 0.00 2.17
85 86 8.251026 CCTTCATACTTTTCCCTGTTTAAATCC 58.749 37.037 0.00 0.00 0.00 3.01
86 87 7.385778 TCATACTTTTCCCTGTTTAAATCCG 57.614 36.000 0.00 0.00 0.00 4.18
87 88 7.169591 TCATACTTTTCCCTGTTTAAATCCGA 58.830 34.615 0.00 0.00 0.00 4.55
88 89 7.666388 TCATACTTTTCCCTGTTTAAATCCGAA 59.334 33.333 0.00 0.00 0.00 4.30
89 90 6.080648 ACTTTTCCCTGTTTAAATCCGAAC 57.919 37.500 0.00 0.00 0.00 3.95
90 91 4.752661 TTTCCCTGTTTAAATCCGAACG 57.247 40.909 0.00 0.00 0.00 3.95
91 92 2.702261 TCCCTGTTTAAATCCGAACGG 58.298 47.619 6.94 6.94 33.06 4.44
100 101 4.667420 TCCGAACGGAGCAACTTC 57.333 55.556 12.04 0.00 39.76 3.01
101 102 1.005394 TCCGAACGGAGCAACTTCC 60.005 57.895 12.04 0.00 39.76 3.46
102 103 1.301401 CCGAACGGAGCAACTTCCA 60.301 57.895 7.53 0.00 37.05 3.53
103 104 0.673644 CCGAACGGAGCAACTTCCAT 60.674 55.000 7.53 0.00 37.05 3.41
104 105 1.404986 CCGAACGGAGCAACTTCCATA 60.405 52.381 7.53 0.00 37.05 2.74
105 106 2.550978 CGAACGGAGCAACTTCCATAT 58.449 47.619 0.00 0.00 37.05 1.78
106 107 2.936498 CGAACGGAGCAACTTCCATATT 59.064 45.455 0.00 0.00 37.05 1.28
107 108 3.001330 CGAACGGAGCAACTTCCATATTC 59.999 47.826 0.00 0.00 37.05 1.75
108 109 2.919228 ACGGAGCAACTTCCATATTCC 58.081 47.619 0.00 0.00 37.05 3.01
109 110 1.867233 CGGAGCAACTTCCATATTCCG 59.133 52.381 0.00 0.00 39.90 4.30
110 111 2.741878 CGGAGCAACTTCCATATTCCGT 60.742 50.000 2.11 0.00 40.73 4.69
111 112 2.614057 GGAGCAACTTCCATATTCCGTG 59.386 50.000 0.00 0.00 37.20 4.94
112 113 2.614057 GAGCAACTTCCATATTCCGTGG 59.386 50.000 0.00 0.00 38.11 4.94
113 114 2.238646 AGCAACTTCCATATTCCGTGGA 59.761 45.455 0.00 0.00 43.77 4.02
114 115 3.117888 AGCAACTTCCATATTCCGTGGAT 60.118 43.478 0.00 0.00 44.75 3.41
115 116 4.102524 AGCAACTTCCATATTCCGTGGATA 59.897 41.667 0.00 0.00 44.75 2.59
116 117 4.819630 GCAACTTCCATATTCCGTGGATAA 59.180 41.667 0.00 0.00 44.75 1.75
117 118 5.277828 GCAACTTCCATATTCCGTGGATAAC 60.278 44.000 0.00 0.00 44.75 1.89
131 132 6.184580 CGTGGATAACGCTATTAGAGATCT 57.815 41.667 0.00 0.00 46.99 2.75
132 133 6.613233 CGTGGATAACGCTATTAGAGATCTT 58.387 40.000 0.00 0.00 46.99 2.40
133 134 7.085116 CGTGGATAACGCTATTAGAGATCTTT 58.915 38.462 0.00 0.00 46.99 2.52
134 135 7.595502 CGTGGATAACGCTATTAGAGATCTTTT 59.404 37.037 0.00 0.00 46.99 2.27
135 136 8.704234 GTGGATAACGCTATTAGAGATCTTTTG 58.296 37.037 0.00 0.00 0.00 2.44
136 137 7.385205 TGGATAACGCTATTAGAGATCTTTTGC 59.615 37.037 0.00 0.00 0.00 3.68
137 138 7.600752 GGATAACGCTATTAGAGATCTTTTGCT 59.399 37.037 0.00 0.00 0.00 3.91
138 139 8.894768 ATAACGCTATTAGAGATCTTTTGCTT 57.105 30.769 0.00 0.00 0.00 3.91
139 140 7.617041 AACGCTATTAGAGATCTTTTGCTTT 57.383 32.000 0.00 0.00 0.00 3.51
140 141 8.718102 AACGCTATTAGAGATCTTTTGCTTTA 57.282 30.769 0.00 0.00 0.00 1.85
141 142 8.132604 ACGCTATTAGAGATCTTTTGCTTTAC 57.867 34.615 0.00 0.00 0.00 2.01
142 143 7.224949 ACGCTATTAGAGATCTTTTGCTTTACC 59.775 37.037 0.00 0.00 0.00 2.85
143 144 7.307455 CGCTATTAGAGATCTTTTGCTTTACCC 60.307 40.741 0.00 0.00 0.00 3.69
144 145 7.717436 GCTATTAGAGATCTTTTGCTTTACCCT 59.283 37.037 0.00 0.00 0.00 4.34
145 146 9.267084 CTATTAGAGATCTTTTGCTTTACCCTC 57.733 37.037 0.00 0.00 0.00 4.30
146 147 5.770685 AGAGATCTTTTGCTTTACCCTCT 57.229 39.130 0.00 0.00 0.00 3.69
147 148 5.739959 AGAGATCTTTTGCTTTACCCTCTC 58.260 41.667 0.00 0.00 0.00 3.20
148 149 5.487131 AGAGATCTTTTGCTTTACCCTCTCT 59.513 40.000 0.00 0.00 33.83 3.10
149 150 5.739959 AGATCTTTTGCTTTACCCTCTCTC 58.260 41.667 0.00 0.00 0.00 3.20
150 151 5.487131 AGATCTTTTGCTTTACCCTCTCTCT 59.513 40.000 0.00 0.00 0.00 3.10
151 152 5.153950 TCTTTTGCTTTACCCTCTCTCTC 57.846 43.478 0.00 0.00 0.00 3.20
152 153 3.594603 TTTGCTTTACCCTCTCTCTCG 57.405 47.619 0.00 0.00 0.00 4.04
153 154 2.509166 TGCTTTACCCTCTCTCTCGA 57.491 50.000 0.00 0.00 0.00 4.04
154 155 2.803956 TGCTTTACCCTCTCTCTCGAA 58.196 47.619 0.00 0.00 0.00 3.71
155 156 3.366396 TGCTTTACCCTCTCTCTCGAAT 58.634 45.455 0.00 0.00 0.00 3.34
156 157 3.131223 TGCTTTACCCTCTCTCTCGAATG 59.869 47.826 0.00 0.00 0.00 2.67
157 158 3.381908 GCTTTACCCTCTCTCTCGAATGA 59.618 47.826 0.00 0.00 0.00 2.57
158 159 4.735283 GCTTTACCCTCTCTCTCGAATGAC 60.735 50.000 0.00 0.00 0.00 3.06
159 160 2.818751 ACCCTCTCTCTCGAATGACT 57.181 50.000 0.00 0.00 0.00 3.41
160 161 2.374184 ACCCTCTCTCTCGAATGACTG 58.626 52.381 0.00 0.00 0.00 3.51
161 162 2.291282 ACCCTCTCTCTCGAATGACTGT 60.291 50.000 0.00 0.00 0.00 3.55
162 163 2.757868 CCCTCTCTCTCGAATGACTGTT 59.242 50.000 0.00 0.00 0.00 3.16
163 164 3.194542 CCCTCTCTCTCGAATGACTGTTT 59.805 47.826 0.00 0.00 0.00 2.83
164 165 4.420168 CCTCTCTCTCGAATGACTGTTTC 58.580 47.826 0.00 0.00 0.00 2.78
165 166 4.082517 CCTCTCTCTCGAATGACTGTTTCA 60.083 45.833 0.00 0.00 39.11 2.69
166 167 5.453567 TCTCTCTCGAATGACTGTTTCAA 57.546 39.130 0.00 0.00 37.92 2.69
167 168 6.030548 TCTCTCTCGAATGACTGTTTCAAT 57.969 37.500 0.00 0.00 37.92 2.57
168 169 6.096036 TCTCTCTCGAATGACTGTTTCAATC 58.904 40.000 0.00 0.00 37.92 2.67
169 170 6.030548 TCTCTCGAATGACTGTTTCAATCT 57.969 37.500 0.00 0.00 37.92 2.40
170 171 7.121315 TCTCTCTCGAATGACTGTTTCAATCTA 59.879 37.037 0.00 0.00 37.92 1.98
171 172 7.030165 TCTCTCGAATGACTGTTTCAATCTAC 58.970 38.462 0.00 0.00 37.92 2.59
172 173 6.925211 TCTCGAATGACTGTTTCAATCTACT 58.075 36.000 0.00 0.00 37.92 2.57
173 174 6.808704 TCTCGAATGACTGTTTCAATCTACTG 59.191 38.462 0.00 0.00 37.92 2.74
174 175 6.455647 TCGAATGACTGTTTCAATCTACTGT 58.544 36.000 0.00 0.00 37.92 3.55
175 176 7.599171 TCGAATGACTGTTTCAATCTACTGTA 58.401 34.615 0.00 0.00 37.92 2.74
176 177 8.085909 TCGAATGACTGTTTCAATCTACTGTAA 58.914 33.333 0.00 0.00 37.92 2.41
177 178 8.376203 CGAATGACTGTTTCAATCTACTGTAAG 58.624 37.037 0.00 0.00 37.92 2.34
178 179 9.209175 GAATGACTGTTTCAATCTACTGTAAGT 57.791 33.333 0.00 0.00 44.89 2.24
196 197 6.827641 TGTAAGTATTTGTTCACTCAATCGC 58.172 36.000 0.00 0.00 0.00 4.58
197 198 4.946784 AGTATTTGTTCACTCAATCGCC 57.053 40.909 0.00 0.00 0.00 5.54
198 199 4.579869 AGTATTTGTTCACTCAATCGCCT 58.420 39.130 0.00 0.00 0.00 5.52
199 200 5.730550 AGTATTTGTTCACTCAATCGCCTA 58.269 37.500 0.00 0.00 0.00 3.93
200 201 4.946784 ATTTGTTCACTCAATCGCCTAC 57.053 40.909 0.00 0.00 0.00 3.18
201 202 3.678056 TTGTTCACTCAATCGCCTACT 57.322 42.857 0.00 0.00 0.00 2.57
202 203 2.959516 TGTTCACTCAATCGCCTACTG 58.040 47.619 0.00 0.00 0.00 2.74
203 204 2.299013 TGTTCACTCAATCGCCTACTGT 59.701 45.455 0.00 0.00 0.00 3.55
204 205 3.508402 TGTTCACTCAATCGCCTACTGTA 59.492 43.478 0.00 0.00 0.00 2.74
205 206 4.159693 TGTTCACTCAATCGCCTACTGTAT 59.840 41.667 0.00 0.00 0.00 2.29
206 207 4.569761 TCACTCAATCGCCTACTGTATC 57.430 45.455 0.00 0.00 0.00 2.24
207 208 4.207955 TCACTCAATCGCCTACTGTATCT 58.792 43.478 0.00 0.00 0.00 1.98
208 209 4.036852 TCACTCAATCGCCTACTGTATCTG 59.963 45.833 0.00 0.00 0.00 2.90
209 210 3.243569 ACTCAATCGCCTACTGTATCTGC 60.244 47.826 0.00 0.00 0.00 4.26
210 211 2.959030 TCAATCGCCTACTGTATCTGCT 59.041 45.455 0.00 0.00 0.00 4.24
211 212 4.142038 TCAATCGCCTACTGTATCTGCTA 58.858 43.478 0.00 0.00 0.00 3.49
212 213 4.767409 TCAATCGCCTACTGTATCTGCTAT 59.233 41.667 0.00 0.00 0.00 2.97
213 214 5.243954 TCAATCGCCTACTGTATCTGCTATT 59.756 40.000 0.00 0.00 0.00 1.73
214 215 4.768130 TCGCCTACTGTATCTGCTATTC 57.232 45.455 0.00 0.00 0.00 1.75
215 216 3.506455 TCGCCTACTGTATCTGCTATTCC 59.494 47.826 0.00 0.00 0.00 3.01
216 217 3.367498 CGCCTACTGTATCTGCTATTCCC 60.367 52.174 0.00 0.00 0.00 3.97
217 218 3.578716 GCCTACTGTATCTGCTATTCCCA 59.421 47.826 0.00 0.00 0.00 4.37
218 219 4.040461 GCCTACTGTATCTGCTATTCCCAA 59.960 45.833 0.00 0.00 0.00 4.12
219 220 5.280215 GCCTACTGTATCTGCTATTCCCAAT 60.280 44.000 0.00 0.00 0.00 3.16
220 221 6.169094 CCTACTGTATCTGCTATTCCCAATG 58.831 44.000 0.00 0.00 0.00 2.82
221 222 4.392940 ACTGTATCTGCTATTCCCAATGC 58.607 43.478 0.00 0.00 0.00 3.56
222 223 4.141413 ACTGTATCTGCTATTCCCAATGCA 60.141 41.667 0.00 0.00 0.00 3.96
223 224 4.790937 TGTATCTGCTATTCCCAATGCAA 58.209 39.130 0.00 0.00 34.90 4.08
224 225 5.387788 TGTATCTGCTATTCCCAATGCAAT 58.612 37.500 0.00 0.00 34.90 3.56
225 226 6.541907 TGTATCTGCTATTCCCAATGCAATA 58.458 36.000 0.00 0.00 34.90 1.90
226 227 7.177184 TGTATCTGCTATTCCCAATGCAATAT 58.823 34.615 0.00 0.00 34.90 1.28
227 228 7.670979 TGTATCTGCTATTCCCAATGCAATATT 59.329 33.333 0.00 0.00 34.90 1.28
228 229 9.177608 GTATCTGCTATTCCCAATGCAATATTA 57.822 33.333 0.00 0.00 34.90 0.98
229 230 7.692460 TCTGCTATTCCCAATGCAATATTAG 57.308 36.000 0.00 0.00 34.90 1.73
230 231 6.151648 TCTGCTATTCCCAATGCAATATTAGC 59.848 38.462 0.00 0.00 34.90 3.09
231 232 6.012113 TGCTATTCCCAATGCAATATTAGCT 58.988 36.000 0.00 0.00 32.12 3.32
232 233 6.071784 TGCTATTCCCAATGCAATATTAGCTG 60.072 38.462 0.00 3.28 32.12 4.24
233 234 6.071728 GCTATTCCCAATGCAATATTAGCTGT 60.072 38.462 0.00 0.00 0.00 4.40
234 235 6.736110 ATTCCCAATGCAATATTAGCTGTT 57.264 33.333 0.00 0.00 0.00 3.16
235 236 5.772825 TCCCAATGCAATATTAGCTGTTC 57.227 39.130 0.00 0.00 0.00 3.18
236 237 5.448654 TCCCAATGCAATATTAGCTGTTCT 58.551 37.500 0.00 0.00 0.00 3.01
237 238 6.600388 TCCCAATGCAATATTAGCTGTTCTA 58.400 36.000 0.00 0.00 0.00 2.10
238 239 6.712095 TCCCAATGCAATATTAGCTGTTCTAG 59.288 38.462 0.00 0.00 0.00 2.43
239 240 6.712095 CCCAATGCAATATTAGCTGTTCTAGA 59.288 38.462 0.00 0.00 0.00 2.43
240 241 7.094890 CCCAATGCAATATTAGCTGTTCTAGAG 60.095 40.741 0.00 0.00 0.00 2.43
241 242 7.296660 CAATGCAATATTAGCTGTTCTAGAGC 58.703 38.462 0.00 0.00 36.65 4.09
243 244 6.586344 TGCAATATTAGCTGTTCTAGAGCTT 58.414 36.000 9.96 0.00 44.65 3.74
244 245 7.726216 TGCAATATTAGCTGTTCTAGAGCTTA 58.274 34.615 9.96 2.40 44.65 3.09
245 246 7.653713 TGCAATATTAGCTGTTCTAGAGCTTAC 59.346 37.037 9.96 0.00 44.65 2.34
246 247 7.653713 GCAATATTAGCTGTTCTAGAGCTTACA 59.346 37.037 9.96 2.86 44.65 2.41
247 248 9.703892 CAATATTAGCTGTTCTAGAGCTTACAT 57.296 33.333 9.96 4.28 44.65 2.29
251 252 8.928270 TTAGCTGTTCTAGAGCTTACATTAAC 57.072 34.615 9.96 0.00 44.65 2.01
252 253 6.936279 AGCTGTTCTAGAGCTTACATTAACA 58.064 36.000 8.15 0.00 44.65 2.41
253 254 7.386851 AGCTGTTCTAGAGCTTACATTAACAA 58.613 34.615 8.15 0.00 44.65 2.83
254 255 8.043710 AGCTGTTCTAGAGCTTACATTAACAAT 58.956 33.333 8.15 0.00 44.65 2.71
255 256 9.314321 GCTGTTCTAGAGCTTACATTAACAATA 57.686 33.333 8.15 0.00 33.37 1.90
263 264 9.838339 AGAGCTTACATTAACAATATTAGCTGT 57.162 29.630 8.02 2.49 0.00 4.40
798 867 8.512956 GTCATCTAGTAAGAGTAATAATCGGCA 58.487 37.037 0.00 0.00 34.49 5.69
803 872 6.217294 AGTAAGAGTAATAATCGGCAAGCTC 58.783 40.000 0.00 0.00 0.00 4.09
839 908 2.204228 TGGGAGGGGGCTTTGCTA 60.204 61.111 0.00 0.00 0.00 3.49
922 991 2.750637 TCGAGAGCCTCCACGGTC 60.751 66.667 8.58 0.00 34.25 4.79
945 1014 3.853475 CCTGAAACATTCATTCCAAGCC 58.147 45.455 0.00 0.00 39.30 4.35
946 1015 3.512724 CCTGAAACATTCATTCCAAGCCT 59.487 43.478 0.00 0.00 39.30 4.58
947 1016 4.020839 CCTGAAACATTCATTCCAAGCCTT 60.021 41.667 0.00 0.00 39.30 4.35
948 1017 4.885413 TGAAACATTCATTCCAAGCCTTG 58.115 39.130 0.00 0.00 34.08 3.61
949 1018 4.344679 TGAAACATTCATTCCAAGCCTTGT 59.655 37.500 3.37 0.00 34.08 3.16
950 1019 4.525912 AACATTCATTCCAAGCCTTGTC 57.474 40.909 3.37 0.00 0.00 3.18
951 1020 2.489329 ACATTCATTCCAAGCCTTGTCG 59.511 45.455 3.37 0.00 0.00 4.35
952 1021 1.533625 TTCATTCCAAGCCTTGTCGG 58.466 50.000 3.37 0.00 0.00 4.79
953 1022 0.322456 TCATTCCAAGCCTTGTCGGG 60.322 55.000 3.37 0.00 0.00 5.14
1002 1071 0.668096 TCGACCGAACCACCGAAATG 60.668 55.000 0.00 0.00 0.00 2.32
1014 1083 1.135315 CGAAATGCAGCTTCCCACG 59.865 57.895 0.00 0.00 0.00 4.94
1035 1104 1.133915 TCGCCAATGGAGGGGAATAAC 60.134 52.381 2.05 0.00 46.25 1.89
1038 1107 2.949447 CCAATGGAGGGGAATAACAGG 58.051 52.381 0.00 0.00 0.00 4.00
1066 1135 1.230635 CGACAGTTCCCACAGCCAAG 61.231 60.000 0.00 0.00 0.00 3.61
1112 1181 4.261489 GCCATGCCTCTCTGTTCATATTTG 60.261 45.833 0.00 0.00 0.00 2.32
1155 1224 7.439108 ACACTATAAGCTCTTGAGGGTTATT 57.561 36.000 0.00 0.00 38.07 1.40
1156 1225 7.275920 ACACTATAAGCTCTTGAGGGTTATTG 58.724 38.462 0.00 0.00 38.07 1.90
1157 1226 7.092846 ACACTATAAGCTCTTGAGGGTTATTGT 60.093 37.037 0.00 0.00 40.59 2.71
1158 1227 8.421784 CACTATAAGCTCTTGAGGGTTATTGTA 58.578 37.037 10.41 0.00 39.24 2.41
1191 1260 7.130917 TGCAATGTAAATGTTGAATGTTTTGC 58.869 30.769 0.00 0.00 0.00 3.68
1224 1293 3.552604 TTTTCTTGCGTGTTATGAGCC 57.447 42.857 0.00 0.00 0.00 4.70
1265 1334 4.580580 GGTGGTTTTGACAGAGTGAAGAAT 59.419 41.667 0.00 0.00 0.00 2.40
1278 1347 9.956720 ACAGAGTGAAGAATTAGTCAAAAATTG 57.043 29.630 0.00 0.00 0.00 2.32
1286 1355 8.635765 AGAATTAGTCAAAAATTGTAGCCAGA 57.364 30.769 0.00 0.00 0.00 3.86
1308 1377 0.383949 TGGGTTCAAAGTTTCGCTGC 59.616 50.000 0.00 0.00 0.00 5.25
1329 1398 1.139163 CCGCCATGACTTTGTTTTGC 58.861 50.000 0.00 0.00 0.00 3.68
1351 1420 4.739137 GCTTTTGCCCACTTCAACATGTAA 60.739 41.667 0.00 0.00 40.15 2.41
1371 1440 6.668645 TGTAAAACTATGAACCTGGCCATAT 58.331 36.000 5.51 0.00 0.00 1.78
1376 1445 8.602472 AAACTATGAACCTGGCCATATTTTTA 57.398 30.769 5.51 0.00 29.59 1.52
1481 1551 5.700846 TGTCTCTCTTTGTTCTGACGATAC 58.299 41.667 0.00 0.00 0.00 2.24
1485 1555 7.169308 GTCTCTCTTTGTTCTGACGATACAAAA 59.831 37.037 6.78 0.16 40.17 2.44
1488 1558 7.494625 TCTCTTTGTTCTGACGATACAAAACTT 59.505 33.333 6.78 0.00 40.17 2.66
1489 1559 7.981142 TCTTTGTTCTGACGATACAAAACTTT 58.019 30.769 6.78 0.00 40.17 2.66
1570 1651 5.643421 ACTCCTGCATCCATTCTCTTAAT 57.357 39.130 0.00 0.00 0.00 1.40
1581 1662 5.937540 TCCATTCTCTTAATGCTTTTCGACA 59.062 36.000 0.00 0.00 0.00 4.35
1638 1729 1.123077 TGCAAGTATCAGAGGGCGAT 58.877 50.000 0.00 0.00 0.00 4.58
1785 2006 8.542953 GTTGTTTCCATCTTGAATTCAAAGTTC 58.457 33.333 20.82 7.75 35.15 3.01
1946 2181 2.268762 TATGTTGCAGCAACTGGACA 57.731 45.000 32.99 18.06 43.85 4.02
2165 2401 2.071778 ACAAGCCATGGTGTCTTTGT 57.928 45.000 14.67 12.96 0.00 2.83
2356 2624 2.818432 GACAAAGACTCTGGACCGTAGA 59.182 50.000 0.11 0.00 0.00 2.59
2394 2668 2.692557 AGCGAGCTCAAGACATAGATGT 59.307 45.455 15.40 0.00 45.16 3.06
2641 2917 2.671682 GACCTTGTCTGCCTCCCC 59.328 66.667 0.00 0.00 0.00 4.81
2876 3292 5.902613 ATTTGGTTTCATCATGTCGTCAT 57.097 34.783 0.00 0.00 34.21 3.06
3195 3660 8.017946 GGTGATGTCTTTGTCTATGTTTCTTTC 58.982 37.037 0.00 0.00 0.00 2.62
3400 3872 1.257743 TAGCAGCTCCGAGAACAAGT 58.742 50.000 0.00 0.00 0.00 3.16
3502 3974 6.721318 TCTCCCAACTTGCAAAAGATAGTAT 58.279 36.000 0.00 0.00 0.00 2.12
3554 4026 2.286523 CCCTTGAGGCACCTCGTCT 61.287 63.158 11.96 0.00 45.48 4.18
3650 4125 9.018582 GGAGATAAATTTTCATGGATAAGGAGG 57.981 37.037 0.00 0.00 0.00 4.30
3680 4157 9.521503 GACTTATCTCAGGCCAAATAATTTTTC 57.478 33.333 5.01 0.00 0.00 2.29
3684 4161 4.831107 TCAGGCCAAATAATTTTTCAGGC 58.169 39.130 5.01 13.24 39.86 4.85
3696 4173 6.555463 AATTTTTCAGGCCATCTTCATCAT 57.445 33.333 5.01 0.00 0.00 2.45
3699 4176 1.422781 TCAGGCCATCTTCATCATCCC 59.577 52.381 5.01 0.00 0.00 3.85
3706 4183 1.595382 CTTCATCATCCCGGCGGTC 60.595 63.158 26.32 0.00 0.00 4.79
3709 4186 2.123251 ATCATCCCGGCGGTCTCT 60.123 61.111 26.32 2.83 0.00 3.10
3740 4217 2.090719 AGGGAGTAATTCATCCTCGGGA 60.091 50.000 8.37 0.00 35.80 5.14
3741 4218 2.037381 GGGAGTAATTCATCCTCGGGAC 59.963 54.545 8.37 0.00 32.98 4.46
3754 4231 2.877866 CTCGGGACTGAGGGTATGTAT 58.122 52.381 0.07 0.00 32.18 2.29
3767 4244 9.907229 CTGAGGGTATGTATCAGTAGATATGTA 57.093 37.037 0.00 0.00 38.88 2.29
3785 4262 9.273016 AGATATGTATTTGATCCAAGGTTTACG 57.727 33.333 0.00 0.00 0.00 3.18
3808 4285 4.828409 ACGAGTCGTCCCAAGGTA 57.172 55.556 13.56 0.00 33.69 3.08
3809 4286 2.564471 ACGAGTCGTCCCAAGGTAG 58.436 57.895 13.56 0.00 33.69 3.18
3810 4287 0.037303 ACGAGTCGTCCCAAGGTAGA 59.963 55.000 13.56 0.00 33.69 2.59
3811 4288 0.733729 CGAGTCGTCCCAAGGTAGAG 59.266 60.000 3.82 0.00 0.00 2.43
3812 4289 1.678123 CGAGTCGTCCCAAGGTAGAGA 60.678 57.143 3.82 0.00 0.00 3.10
3813 4290 1.744522 GAGTCGTCCCAAGGTAGAGAC 59.255 57.143 0.00 0.00 0.00 3.36
3814 4291 1.355043 AGTCGTCCCAAGGTAGAGACT 59.645 52.381 0.00 0.00 33.27 3.24
3815 4292 1.744522 GTCGTCCCAAGGTAGAGACTC 59.255 57.143 0.00 0.00 0.00 3.36
3816 4293 1.353358 TCGTCCCAAGGTAGAGACTCA 59.647 52.381 5.02 0.00 0.00 3.41
3817 4294 2.025226 TCGTCCCAAGGTAGAGACTCAT 60.025 50.000 5.02 0.00 0.00 2.90
3818 4295 3.201487 TCGTCCCAAGGTAGAGACTCATA 59.799 47.826 5.02 0.00 0.00 2.15
3819 4296 3.566322 CGTCCCAAGGTAGAGACTCATAG 59.434 52.174 5.02 0.00 0.00 2.23
3955 4477 0.921896 AGTGGGCATGCAATAGGACT 59.078 50.000 21.36 8.20 0.00 3.85
3978 4500 4.290942 AGCCACTGTCTAAATACTAGCCT 58.709 43.478 0.00 0.00 0.00 4.58
3994 4517 2.047844 CTAGCACCACGCAGCACT 60.048 61.111 0.00 0.00 46.13 4.40
4046 4569 1.062488 CCTACTTAGCCCCCAGCCAT 61.062 60.000 0.00 0.00 45.47 4.40
4160 4691 4.003788 CCGGTCCCAGTCGTTGCT 62.004 66.667 0.00 0.00 0.00 3.91
4237 4769 4.019681 TCTCTCTTCCTTCTCTCTCGTCTT 60.020 45.833 0.00 0.00 0.00 3.01
4329 4868 4.498520 CTGCGCCATCCGTCGTCT 62.499 66.667 4.18 0.00 39.71 4.18
4442 4981 7.436430 GACTCATATATGTCGACTAGTCCAA 57.564 40.000 17.92 2.90 0.00 3.53
4469 5008 1.376543 GTCGACTAGTCCATCCACGA 58.623 55.000 17.23 6.88 0.00 4.35
4519 5059 5.419155 AGAAAATGAGTCGACATCCACTCTA 59.581 40.000 19.50 0.00 39.92 2.43
4520 5060 5.860941 AAATGAGTCGACATCCACTCTAT 57.139 39.130 19.50 0.00 39.92 1.98
4605 5150 4.075682 TGTCTCTCTCGTGTTCTTGATCT 58.924 43.478 0.00 0.00 0.00 2.75
4610 5155 1.728971 CTCGTGTTCTTGATCTGGCAC 59.271 52.381 0.00 0.00 0.00 5.01
4639 5184 3.034721 TGTACCACGAGCTTTGTTAGG 57.965 47.619 0.00 0.00 0.00 2.69
4640 5185 2.629137 TGTACCACGAGCTTTGTTAGGA 59.371 45.455 0.00 0.00 0.00 2.94
4641 5186 2.457366 ACCACGAGCTTTGTTAGGAG 57.543 50.000 0.00 0.00 0.00 3.69
4642 5187 1.079503 CCACGAGCTTTGTTAGGAGC 58.920 55.000 0.00 0.00 39.17 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 1.184322 ACCGGGATTGCAAACATGCA 61.184 50.000 6.32 0.00 43.81 3.96
11 12 0.037419 AACCGGGATTGCAAACATGC 60.037 50.000 6.32 0.00 0.00 4.06
12 13 2.453983 AAACCGGGATTGCAAACATG 57.546 45.000 6.32 0.00 0.00 3.21
13 14 2.549778 CCAAAACCGGGATTGCAAACAT 60.550 45.455 6.32 0.00 0.00 2.71
14 15 1.202580 CCAAAACCGGGATTGCAAACA 60.203 47.619 6.32 0.00 0.00 2.83
15 16 1.507562 CCAAAACCGGGATTGCAAAC 58.492 50.000 6.32 0.00 0.00 2.93
16 17 0.250081 GCCAAAACCGGGATTGCAAA 60.250 50.000 6.32 0.00 0.00 3.68
17 18 1.369321 GCCAAAACCGGGATTGCAA 59.631 52.632 6.32 0.00 0.00 4.08
18 19 1.814772 CTGCCAAAACCGGGATTGCA 61.815 55.000 6.32 11.43 0.00 4.08
19 20 1.079888 CTGCCAAAACCGGGATTGC 60.080 57.895 6.32 7.55 0.00 3.56
20 21 0.243636 GACTGCCAAAACCGGGATTG 59.756 55.000 6.32 10.56 0.00 2.67
21 22 0.178975 TGACTGCCAAAACCGGGATT 60.179 50.000 6.32 0.00 0.00 3.01
22 23 0.039618 ATGACTGCCAAAACCGGGAT 59.960 50.000 6.32 0.00 0.00 3.85
23 24 0.693622 TATGACTGCCAAAACCGGGA 59.306 50.000 6.32 0.00 0.00 5.14
24 25 1.540267 TTATGACTGCCAAAACCGGG 58.460 50.000 6.32 0.00 0.00 5.73
25 26 2.817258 TCTTTATGACTGCCAAAACCGG 59.183 45.455 0.00 0.00 0.00 5.28
26 27 3.252215 TGTCTTTATGACTGCCAAAACCG 59.748 43.478 0.17 0.00 45.54 4.44
27 28 4.846779 TGTCTTTATGACTGCCAAAACC 57.153 40.909 0.17 0.00 45.54 3.27
28 29 4.681483 GCTTGTCTTTATGACTGCCAAAAC 59.319 41.667 0.17 0.00 45.54 2.43
29 30 4.870363 GCTTGTCTTTATGACTGCCAAAA 58.130 39.130 0.17 0.00 45.54 2.44
30 31 4.503741 GCTTGTCTTTATGACTGCCAAA 57.496 40.909 0.17 0.00 45.54 3.28
34 35 4.503741 TTTGGCTTGTCTTTATGACTGC 57.496 40.909 0.17 4.60 45.54 4.40
35 36 6.076981 AGTTTTGGCTTGTCTTTATGACTG 57.923 37.500 0.17 0.00 45.54 3.51
36 37 5.241728 GGAGTTTTGGCTTGTCTTTATGACT 59.758 40.000 0.17 0.00 45.54 3.41
37 38 5.241728 AGGAGTTTTGGCTTGTCTTTATGAC 59.758 40.000 0.00 0.00 45.54 3.06
38 39 5.385198 AGGAGTTTTGGCTTGTCTTTATGA 58.615 37.500 0.00 0.00 0.00 2.15
39 40 5.712152 AGGAGTTTTGGCTTGTCTTTATG 57.288 39.130 0.00 0.00 0.00 1.90
40 41 5.833131 TGAAGGAGTTTTGGCTTGTCTTTAT 59.167 36.000 0.00 0.00 0.00 1.40
41 42 5.197451 TGAAGGAGTTTTGGCTTGTCTTTA 58.803 37.500 0.00 0.00 0.00 1.85
42 43 4.023291 TGAAGGAGTTTTGGCTTGTCTTT 58.977 39.130 0.00 0.00 0.00 2.52
43 44 3.631250 TGAAGGAGTTTTGGCTTGTCTT 58.369 40.909 0.00 0.00 0.00 3.01
44 45 3.297134 TGAAGGAGTTTTGGCTTGTCT 57.703 42.857 0.00 0.00 0.00 3.41
45 46 4.762251 AGTATGAAGGAGTTTTGGCTTGTC 59.238 41.667 0.00 0.00 0.00 3.18
46 47 4.729868 AGTATGAAGGAGTTTTGGCTTGT 58.270 39.130 0.00 0.00 0.00 3.16
47 48 5.712152 AAGTATGAAGGAGTTTTGGCTTG 57.288 39.130 0.00 0.00 0.00 4.01
48 49 6.239317 GGAAAAGTATGAAGGAGTTTTGGCTT 60.239 38.462 0.00 0.00 31.19 4.35
49 50 5.243954 GGAAAAGTATGAAGGAGTTTTGGCT 59.756 40.000 0.00 0.00 31.19 4.75
50 51 5.470368 GGAAAAGTATGAAGGAGTTTTGGC 58.530 41.667 0.00 0.00 31.19 4.52
51 52 5.775195 AGGGAAAAGTATGAAGGAGTTTTGG 59.225 40.000 0.00 0.00 31.19 3.28
52 53 6.265422 ACAGGGAAAAGTATGAAGGAGTTTTG 59.735 38.462 0.00 0.00 31.19 2.44
53 54 6.373759 ACAGGGAAAAGTATGAAGGAGTTTT 58.626 36.000 0.00 0.00 33.20 2.43
54 55 5.953571 ACAGGGAAAAGTATGAAGGAGTTT 58.046 37.500 0.00 0.00 0.00 2.66
55 56 5.584551 ACAGGGAAAAGTATGAAGGAGTT 57.415 39.130 0.00 0.00 0.00 3.01
56 57 5.584551 AACAGGGAAAAGTATGAAGGAGT 57.415 39.130 0.00 0.00 0.00 3.85
57 58 7.996098 TTAAACAGGGAAAAGTATGAAGGAG 57.004 36.000 0.00 0.00 0.00 3.69
58 59 8.950007 ATTTAAACAGGGAAAAGTATGAAGGA 57.050 30.769 0.00 0.00 0.00 3.36
59 60 8.251026 GGATTTAAACAGGGAAAAGTATGAAGG 58.749 37.037 0.00 0.00 0.00 3.46
60 61 7.968405 CGGATTTAAACAGGGAAAAGTATGAAG 59.032 37.037 0.00 0.00 0.00 3.02
61 62 7.666388 TCGGATTTAAACAGGGAAAAGTATGAA 59.334 33.333 0.00 0.00 0.00 2.57
62 63 7.169591 TCGGATTTAAACAGGGAAAAGTATGA 58.830 34.615 0.00 0.00 0.00 2.15
63 64 7.385778 TCGGATTTAAACAGGGAAAAGTATG 57.614 36.000 0.00 0.00 0.00 2.39
64 65 7.361457 CGTTCGGATTTAAACAGGGAAAAGTAT 60.361 37.037 0.00 0.00 0.00 2.12
65 66 6.073112 CGTTCGGATTTAAACAGGGAAAAGTA 60.073 38.462 0.00 0.00 0.00 2.24
66 67 5.278120 CGTTCGGATTTAAACAGGGAAAAGT 60.278 40.000 0.00 0.00 0.00 2.66
67 68 5.151389 CGTTCGGATTTAAACAGGGAAAAG 58.849 41.667 0.00 0.00 0.00 2.27
68 69 4.023021 CCGTTCGGATTTAAACAGGGAAAA 60.023 41.667 5.19 0.00 0.00 2.29
69 70 3.502979 CCGTTCGGATTTAAACAGGGAAA 59.497 43.478 5.19 0.00 0.00 3.13
70 71 3.075884 CCGTTCGGATTTAAACAGGGAA 58.924 45.455 5.19 0.00 0.00 3.97
71 72 2.302445 TCCGTTCGGATTTAAACAGGGA 59.698 45.455 10.00 0.00 0.00 4.20
72 73 2.676342 CTCCGTTCGGATTTAAACAGGG 59.324 50.000 14.34 0.00 33.34 4.45
73 74 2.095372 GCTCCGTTCGGATTTAAACAGG 59.905 50.000 14.34 1.23 33.34 4.00
74 75 2.739913 TGCTCCGTTCGGATTTAAACAG 59.260 45.455 14.34 1.90 33.34 3.16
75 76 2.768698 TGCTCCGTTCGGATTTAAACA 58.231 42.857 14.34 4.28 33.34 2.83
76 77 3.187842 AGTTGCTCCGTTCGGATTTAAAC 59.812 43.478 14.34 14.48 33.34 2.01
77 78 3.404899 AGTTGCTCCGTTCGGATTTAAA 58.595 40.909 14.34 4.58 33.34 1.52
78 79 3.048337 AGTTGCTCCGTTCGGATTTAA 57.952 42.857 14.34 7.46 33.34 1.52
79 80 2.754946 AGTTGCTCCGTTCGGATTTA 57.245 45.000 14.34 1.81 33.34 1.40
80 81 1.804748 GAAGTTGCTCCGTTCGGATTT 59.195 47.619 14.34 4.97 33.34 2.17
81 82 1.439679 GAAGTTGCTCCGTTCGGATT 58.560 50.000 14.34 5.64 33.34 3.01
82 83 0.391263 GGAAGTTGCTCCGTTCGGAT 60.391 55.000 14.34 0.00 33.34 4.18
83 84 1.005394 GGAAGTTGCTCCGTTCGGA 60.005 57.895 13.34 13.34 0.00 4.55
84 85 0.673644 ATGGAAGTTGCTCCGTTCGG 60.674 55.000 4.74 4.74 38.44 4.30
85 86 2.004583 TATGGAAGTTGCTCCGTTCG 57.995 50.000 0.00 0.00 38.44 3.95
86 87 3.312697 GGAATATGGAAGTTGCTCCGTTC 59.687 47.826 0.00 0.00 38.44 3.95
87 88 3.279434 GGAATATGGAAGTTGCTCCGTT 58.721 45.455 0.00 0.00 38.44 4.44
88 89 2.741878 CGGAATATGGAAGTTGCTCCGT 60.742 50.000 12.72 0.00 39.54 4.69
89 90 1.867233 CGGAATATGGAAGTTGCTCCG 59.133 52.381 8.10 8.10 38.44 4.63
90 91 2.614057 CACGGAATATGGAAGTTGCTCC 59.386 50.000 0.00 0.00 35.88 4.70
91 92 2.614057 CCACGGAATATGGAAGTTGCTC 59.386 50.000 0.00 0.00 39.87 4.26
92 93 2.238646 TCCACGGAATATGGAAGTTGCT 59.761 45.455 0.00 0.00 43.43 3.91
93 94 2.639065 TCCACGGAATATGGAAGTTGC 58.361 47.619 0.00 0.00 43.43 4.17
109 110 8.704234 CAAAAGATCTCTAATAGCGTTATCCAC 58.296 37.037 0.00 0.00 0.00 4.02
110 111 7.385205 GCAAAAGATCTCTAATAGCGTTATCCA 59.615 37.037 0.00 0.00 0.00 3.41
111 112 7.600752 AGCAAAAGATCTCTAATAGCGTTATCC 59.399 37.037 0.00 0.00 0.00 2.59
112 113 8.527567 AGCAAAAGATCTCTAATAGCGTTATC 57.472 34.615 0.00 0.00 0.00 1.75
113 114 8.894768 AAGCAAAAGATCTCTAATAGCGTTAT 57.105 30.769 0.00 0.00 0.00 1.89
114 115 8.718102 AAAGCAAAAGATCTCTAATAGCGTTA 57.282 30.769 0.00 0.00 0.00 3.18
115 116 7.617041 AAAGCAAAAGATCTCTAATAGCGTT 57.383 32.000 0.00 0.00 0.00 4.84
116 117 7.224949 GGTAAAGCAAAAGATCTCTAATAGCGT 59.775 37.037 0.00 0.00 0.00 5.07
117 118 7.307455 GGGTAAAGCAAAAGATCTCTAATAGCG 60.307 40.741 0.00 0.00 0.00 4.26
118 119 7.717436 AGGGTAAAGCAAAAGATCTCTAATAGC 59.283 37.037 0.00 0.00 0.00 2.97
119 120 9.267084 GAGGGTAAAGCAAAAGATCTCTAATAG 57.733 37.037 0.00 0.00 0.00 1.73
120 121 8.993424 AGAGGGTAAAGCAAAAGATCTCTAATA 58.007 33.333 0.00 0.00 0.00 0.98
121 122 7.866870 AGAGGGTAAAGCAAAAGATCTCTAAT 58.133 34.615 0.00 0.00 0.00 1.73
122 123 7.181125 AGAGAGGGTAAAGCAAAAGATCTCTAA 59.819 37.037 0.00 0.00 39.25 2.10
123 124 6.670027 AGAGAGGGTAAAGCAAAAGATCTCTA 59.330 38.462 0.00 0.00 39.25 2.43
124 125 5.487131 AGAGAGGGTAAAGCAAAAGATCTCT 59.513 40.000 0.00 0.00 36.93 3.10
125 126 5.739959 AGAGAGGGTAAAGCAAAAGATCTC 58.260 41.667 0.00 0.00 0.00 2.75
126 127 5.487131 AGAGAGAGGGTAAAGCAAAAGATCT 59.513 40.000 0.00 0.00 0.00 2.75
127 128 5.739959 AGAGAGAGGGTAAAGCAAAAGATC 58.260 41.667 0.00 0.00 0.00 2.75
128 129 5.625656 CGAGAGAGAGGGTAAAGCAAAAGAT 60.626 44.000 0.00 0.00 0.00 2.40
129 130 4.322049 CGAGAGAGAGGGTAAAGCAAAAGA 60.322 45.833 0.00 0.00 0.00 2.52
130 131 3.929610 CGAGAGAGAGGGTAAAGCAAAAG 59.070 47.826 0.00 0.00 0.00 2.27
131 132 3.576982 TCGAGAGAGAGGGTAAAGCAAAA 59.423 43.478 0.00 0.00 34.84 2.44
132 133 3.162666 TCGAGAGAGAGGGTAAAGCAAA 58.837 45.455 0.00 0.00 34.84 3.68
133 134 2.803956 TCGAGAGAGAGGGTAAAGCAA 58.196 47.619 0.00 0.00 34.84 3.91
134 135 2.509166 TCGAGAGAGAGGGTAAAGCA 57.491 50.000 0.00 0.00 34.84 3.91
135 136 3.381908 TCATTCGAGAGAGAGGGTAAAGC 59.618 47.826 0.00 0.00 43.69 3.51
136 137 4.642885 AGTCATTCGAGAGAGAGGGTAAAG 59.357 45.833 0.00 0.00 43.69 1.85
137 138 4.399618 CAGTCATTCGAGAGAGAGGGTAAA 59.600 45.833 0.00 0.00 43.69 2.01
138 139 3.948473 CAGTCATTCGAGAGAGAGGGTAA 59.052 47.826 0.00 0.00 43.69 2.85
139 140 3.054287 ACAGTCATTCGAGAGAGAGGGTA 60.054 47.826 0.00 0.00 43.69 3.69
140 141 2.291282 ACAGTCATTCGAGAGAGAGGGT 60.291 50.000 0.00 0.00 43.69 4.34
141 142 2.374184 ACAGTCATTCGAGAGAGAGGG 58.626 52.381 0.00 0.00 43.69 4.30
142 143 4.082517 TGAAACAGTCATTCGAGAGAGAGG 60.083 45.833 0.00 0.00 43.69 3.69
143 144 5.053140 TGAAACAGTCATTCGAGAGAGAG 57.947 43.478 0.00 0.00 43.69 3.20
144 145 5.453567 TTGAAACAGTCATTCGAGAGAGA 57.546 39.130 0.00 0.00 43.69 3.10
145 146 6.098679 AGATTGAAACAGTCATTCGAGAGAG 58.901 40.000 0.00 0.00 43.69 3.20
146 147 6.030548 AGATTGAAACAGTCATTCGAGAGA 57.969 37.500 0.00 0.00 40.21 3.10
147 148 7.009083 CAGTAGATTGAAACAGTCATTCGAGAG 59.991 40.741 0.00 0.00 40.21 3.20
148 149 6.808704 CAGTAGATTGAAACAGTCATTCGAGA 59.191 38.462 0.00 0.00 40.21 4.04
149 150 6.587990 ACAGTAGATTGAAACAGTCATTCGAG 59.412 38.462 0.00 0.00 40.21 4.04
150 151 6.455647 ACAGTAGATTGAAACAGTCATTCGA 58.544 36.000 0.00 0.00 40.21 3.71
151 152 6.712241 ACAGTAGATTGAAACAGTCATTCG 57.288 37.500 0.00 0.00 40.21 3.34
152 153 9.209175 ACTTACAGTAGATTGAAACAGTCATTC 57.791 33.333 0.00 0.00 35.70 2.67
169 170 9.135843 CGATTGAGTGAACAAATACTTACAGTA 57.864 33.333 0.00 0.00 34.82 2.74
170 171 7.360101 GCGATTGAGTGAACAAATACTTACAGT 60.360 37.037 0.00 0.00 33.44 3.55
171 172 6.955963 GCGATTGAGTGAACAAATACTTACAG 59.044 38.462 0.00 0.00 33.44 2.74
172 173 6.128391 GGCGATTGAGTGAACAAATACTTACA 60.128 38.462 0.00 0.00 33.44 2.41
173 174 6.092259 AGGCGATTGAGTGAACAAATACTTAC 59.908 38.462 0.00 0.00 33.44 2.34
174 175 6.170506 AGGCGATTGAGTGAACAAATACTTA 58.829 36.000 0.00 0.00 33.44 2.24
175 176 5.003804 AGGCGATTGAGTGAACAAATACTT 58.996 37.500 0.00 0.00 33.44 2.24
176 177 4.579869 AGGCGATTGAGTGAACAAATACT 58.420 39.130 0.00 0.00 33.44 2.12
177 178 4.946784 AGGCGATTGAGTGAACAAATAC 57.053 40.909 0.00 0.00 33.44 1.89
178 179 5.580691 CAGTAGGCGATTGAGTGAACAAATA 59.419 40.000 0.00 0.00 33.44 1.40
179 180 4.393062 CAGTAGGCGATTGAGTGAACAAAT 59.607 41.667 0.00 0.00 33.44 2.32
180 181 3.745975 CAGTAGGCGATTGAGTGAACAAA 59.254 43.478 0.00 0.00 33.44 2.83
181 182 3.244078 ACAGTAGGCGATTGAGTGAACAA 60.244 43.478 0.00 0.00 0.00 2.83
182 183 2.299013 ACAGTAGGCGATTGAGTGAACA 59.701 45.455 0.00 0.00 0.00 3.18
183 184 2.960819 ACAGTAGGCGATTGAGTGAAC 58.039 47.619 0.00 0.00 0.00 3.18
184 185 4.645136 AGATACAGTAGGCGATTGAGTGAA 59.355 41.667 0.00 0.00 0.00 3.18
185 186 4.036852 CAGATACAGTAGGCGATTGAGTGA 59.963 45.833 0.00 0.00 0.00 3.41
186 187 4.294232 CAGATACAGTAGGCGATTGAGTG 58.706 47.826 0.00 0.00 0.00 3.51
187 188 3.243569 GCAGATACAGTAGGCGATTGAGT 60.244 47.826 0.00 0.00 0.00 3.41
188 189 3.005261 AGCAGATACAGTAGGCGATTGAG 59.995 47.826 0.00 0.00 0.00 3.02
189 190 2.959030 AGCAGATACAGTAGGCGATTGA 59.041 45.455 0.00 0.00 0.00 2.57
190 191 3.377346 AGCAGATACAGTAGGCGATTG 57.623 47.619 0.00 0.00 0.00 2.67
191 192 5.336849 GGAATAGCAGATACAGTAGGCGATT 60.337 44.000 8.68 8.68 33.52 3.34
192 193 4.158764 GGAATAGCAGATACAGTAGGCGAT 59.841 45.833 0.00 0.00 0.00 4.58
193 194 3.506455 GGAATAGCAGATACAGTAGGCGA 59.494 47.826 0.00 0.00 0.00 5.54
194 195 3.367498 GGGAATAGCAGATACAGTAGGCG 60.367 52.174 0.00 0.00 0.00 5.52
195 196 3.578716 TGGGAATAGCAGATACAGTAGGC 59.421 47.826 0.00 0.00 0.00 3.93
196 197 5.808366 TTGGGAATAGCAGATACAGTAGG 57.192 43.478 0.00 0.00 0.00 3.18
197 198 5.641209 GCATTGGGAATAGCAGATACAGTAG 59.359 44.000 0.00 0.00 0.00 2.57
198 199 5.071653 TGCATTGGGAATAGCAGATACAGTA 59.928 40.000 0.00 0.00 32.48 2.74
199 200 4.141413 TGCATTGGGAATAGCAGATACAGT 60.141 41.667 0.00 0.00 32.48 3.55
200 201 4.392047 TGCATTGGGAATAGCAGATACAG 58.608 43.478 0.00 0.00 32.48 2.74
201 202 4.436113 TGCATTGGGAATAGCAGATACA 57.564 40.909 0.00 0.00 32.48 2.29
202 203 5.972107 ATTGCATTGGGAATAGCAGATAC 57.028 39.130 0.00 0.00 38.35 2.24
203 204 9.399797 CTAATATTGCATTGGGAATAGCAGATA 57.600 33.333 0.00 0.00 40.10 1.98
204 205 7.147949 GCTAATATTGCATTGGGAATAGCAGAT 60.148 37.037 0.00 0.00 40.10 2.90
205 206 6.151648 GCTAATATTGCATTGGGAATAGCAGA 59.848 38.462 0.00 0.00 40.10 4.26
206 207 6.152323 AGCTAATATTGCATTGGGAATAGCAG 59.848 38.462 0.00 0.00 40.10 4.24
207 208 6.012113 AGCTAATATTGCATTGGGAATAGCA 58.988 36.000 0.00 0.00 40.10 3.49
208 209 6.071728 ACAGCTAATATTGCATTGGGAATAGC 60.072 38.462 0.00 0.00 40.10 2.97
209 210 7.458409 ACAGCTAATATTGCATTGGGAATAG 57.542 36.000 0.00 0.00 40.10 1.73
210 211 7.725397 AGAACAGCTAATATTGCATTGGGAATA 59.275 33.333 0.00 0.00 40.86 1.75
211 212 6.552350 AGAACAGCTAATATTGCATTGGGAAT 59.448 34.615 0.00 0.00 38.69 3.01
212 213 5.893255 AGAACAGCTAATATTGCATTGGGAA 59.107 36.000 0.00 0.00 0.00 3.97
213 214 5.448654 AGAACAGCTAATATTGCATTGGGA 58.551 37.500 0.00 0.00 0.00 4.37
214 215 5.779529 AGAACAGCTAATATTGCATTGGG 57.220 39.130 0.00 0.00 0.00 4.12
215 216 7.572724 GCTCTAGAACAGCTAATATTGCATTGG 60.573 40.741 0.00 0.00 33.75 3.16
216 217 7.172875 AGCTCTAGAACAGCTAATATTGCATTG 59.827 37.037 3.27 0.00 45.76 2.82
217 218 7.222872 AGCTCTAGAACAGCTAATATTGCATT 58.777 34.615 3.27 0.00 45.76 3.56
218 219 6.767456 AGCTCTAGAACAGCTAATATTGCAT 58.233 36.000 3.27 0.00 45.76 3.96
219 220 6.166984 AGCTCTAGAACAGCTAATATTGCA 57.833 37.500 3.27 0.00 45.76 4.08
220 221 7.653713 TGTAAGCTCTAGAACAGCTAATATTGC 59.346 37.037 5.48 0.09 46.96 3.56
221 222 9.703892 ATGTAAGCTCTAGAACAGCTAATATTG 57.296 33.333 5.48 0.00 46.96 1.90
225 226 9.535878 GTTAATGTAAGCTCTAGAACAGCTAAT 57.464 33.333 5.48 0.00 46.96 1.73
226 227 8.528643 TGTTAATGTAAGCTCTAGAACAGCTAA 58.471 33.333 5.48 1.87 46.96 3.09
227 228 8.063200 TGTTAATGTAAGCTCTAGAACAGCTA 57.937 34.615 5.48 0.00 46.96 3.32
229 230 7.596749 TTGTTAATGTAAGCTCTAGAACAGC 57.403 36.000 0.00 0.00 37.12 4.40
237 238 9.838339 ACAGCTAATATTGTTAATGTAAGCTCT 57.162 29.630 0.00 0.00 0.00 4.09
244 245 9.342308 AGCACATACAGCTAATATTGTTAATGT 57.658 29.630 0.00 0.00 41.32 2.71
249 250 8.522830 ACAAAAGCACATACAGCTAATATTGTT 58.477 29.630 0.00 0.00 42.53 2.83
250 251 7.970061 CACAAAAGCACATACAGCTAATATTGT 59.030 33.333 0.00 0.00 42.53 2.71
251 252 7.433131 CCACAAAAGCACATACAGCTAATATTG 59.567 37.037 0.00 0.00 42.53 1.90
252 253 7.483307 CCACAAAAGCACATACAGCTAATATT 58.517 34.615 0.00 0.00 42.53 1.28
253 254 6.460123 GCCACAAAAGCACATACAGCTAATAT 60.460 38.462 0.00 0.00 42.53 1.28
254 255 5.163663 GCCACAAAAGCACATACAGCTAATA 60.164 40.000 0.00 0.00 42.53 0.98
255 256 4.380867 GCCACAAAAGCACATACAGCTAAT 60.381 41.667 0.00 0.00 42.53 1.73
256 257 3.057596 GCCACAAAAGCACATACAGCTAA 60.058 43.478 0.00 0.00 42.53 3.09
257 258 2.487762 GCCACAAAAGCACATACAGCTA 59.512 45.455 0.00 0.00 42.53 3.32
258 259 1.270550 GCCACAAAAGCACATACAGCT 59.729 47.619 0.00 0.00 45.97 4.24
259 260 1.669795 GGCCACAAAAGCACATACAGC 60.670 52.381 0.00 0.00 0.00 4.40
260 261 1.612950 TGGCCACAAAAGCACATACAG 59.387 47.619 0.00 0.00 0.00 2.74
261 262 1.697284 TGGCCACAAAAGCACATACA 58.303 45.000 0.00 0.00 0.00 2.29
262 263 2.810439 TTGGCCACAAAAGCACATAC 57.190 45.000 3.88 0.00 32.66 2.39
263 264 6.125719 TCTATATTGGCCACAAAAGCACATA 58.874 36.000 3.88 0.00 40.55 2.29
264 265 4.955450 TCTATATTGGCCACAAAAGCACAT 59.045 37.500 3.88 0.00 40.55 3.21
513 532 3.465403 CGACAGCAGGGCTAGGCT 61.465 66.667 16.80 0.29 42.06 4.58
803 872 1.801913 GTCGGACTGCAGCTACACG 60.802 63.158 15.27 11.42 0.00 4.49
898 967 1.067821 GTGGAGGCTCTCGACTATTGG 59.932 57.143 15.23 0.00 36.52 3.16
922 991 3.504863 CTTGGAATGAATGTTTCAGGCG 58.495 45.455 0.00 0.00 43.98 5.52
927 996 4.886579 ACAAGGCTTGGAATGAATGTTTC 58.113 39.130 29.26 0.00 34.12 2.78
945 1014 1.866925 GGCGAAGAAACCCGACAAG 59.133 57.895 0.00 0.00 33.27 3.16
946 1015 1.957186 CGGCGAAGAAACCCGACAA 60.957 57.895 0.00 0.00 44.55 3.18
947 1016 2.356553 CGGCGAAGAAACCCGACA 60.357 61.111 0.00 0.00 44.55 4.35
948 1017 3.116531 CCGGCGAAGAAACCCGAC 61.117 66.667 9.30 0.00 44.55 4.79
949 1018 3.291101 CTCCGGCGAAGAAACCCGA 62.291 63.158 9.30 0.00 44.55 5.14
950 1019 2.813908 CTCCGGCGAAGAAACCCG 60.814 66.667 9.30 0.00 41.60 5.28
951 1020 3.125573 GCTCCGGCGAAGAAACCC 61.126 66.667 9.30 0.00 0.00 4.11
952 1021 2.047179 AGCTCCGGCGAAGAAACC 60.047 61.111 9.30 0.00 44.37 3.27
953 1022 3.028366 GCAGCTCCGGCGAAGAAAC 62.028 63.158 9.30 0.00 44.37 2.78
954 1023 2.742372 GCAGCTCCGGCGAAGAAA 60.742 61.111 9.30 0.00 44.37 2.52
1014 1083 0.472471 TATTCCCCTCCATTGGCGAC 59.528 55.000 0.00 0.00 0.00 5.19
1035 1104 2.069273 GAACTGTCGTTGTGATCCCTG 58.931 52.381 0.00 0.00 32.39 4.45
1038 1107 1.270625 TGGGAACTGTCGTTGTGATCC 60.271 52.381 0.00 0.00 32.39 3.36
1066 1135 2.444421 TCAAGACGAGAGGGGACTTAC 58.556 52.381 0.00 0.00 44.43 2.34
1155 1224 7.332213 ACATTTACATTGCATGCTACATACA 57.668 32.000 20.33 1.31 0.00 2.29
1156 1225 7.914871 TCAACATTTACATTGCATGCTACATAC 59.085 33.333 20.33 0.00 0.00 2.39
1157 1226 7.994194 TCAACATTTACATTGCATGCTACATA 58.006 30.769 20.33 4.71 0.00 2.29
1158 1227 6.865411 TCAACATTTACATTGCATGCTACAT 58.135 32.000 20.33 5.51 0.00 2.29
1191 1260 7.506474 ACACGCAAGAAAAACAACTTAAAAAG 58.494 30.769 0.00 0.00 43.62 2.27
1265 1334 8.087750 CCAAATCTGGCTACAATTTTTGACTAA 58.912 33.333 0.00 0.00 35.39 2.24
1278 1347 3.826729 ACTTTGAACCCAAATCTGGCTAC 59.173 43.478 0.00 0.00 41.99 3.58
1286 1355 3.716601 CAGCGAAACTTTGAACCCAAAT 58.283 40.909 0.00 0.00 41.03 2.32
1308 1377 0.318614 AAAACAAAGTCATGGCGGCG 60.319 50.000 0.51 0.51 0.00 6.46
1329 1398 3.457610 ACATGTTGAAGTGGGCAAAAG 57.542 42.857 0.00 0.00 0.00 2.27
1351 1420 7.494922 AAAAATATGGCCAGGTTCATAGTTT 57.505 32.000 13.05 17.17 42.24 2.66
1401 1470 6.721208 TCATTGCTTTTTGTTCTCCTTCCTAT 59.279 34.615 0.00 0.00 0.00 2.57
1570 1651 1.599171 CCACGCAATTGTCGAAAAGCA 60.599 47.619 22.87 0.00 0.00 3.91
1581 1662 3.633525 AGTATGCATCAATCCACGCAATT 59.366 39.130 0.19 0.00 38.01 2.32
1629 1720 2.609747 TCCTGCTAATTATCGCCCTCT 58.390 47.619 0.00 0.00 0.00 3.69
1638 1729 9.243105 GGCCATATAAAGAAATCCTGCTAATTA 57.757 33.333 0.00 0.00 0.00 1.40
1692 1795 4.308899 CTACAGTACCATGTAGTCTGCC 57.691 50.000 12.11 0.00 45.01 4.85
1759 1976 8.424274 AACTTTGAATTCAAGATGGAAACAAC 57.576 30.769 19.64 0.00 39.80 3.32
1896 2125 6.494491 AGCATCCATTATTTAGCTGCCATAAA 59.506 34.615 0.00 0.00 0.00 1.40
1946 2181 1.746220 AGCGCTGAGTCTATCTTCGTT 59.254 47.619 10.39 0.00 0.00 3.85
2165 2401 2.031120 CAAACTCCTGGTTGCTTTGGA 58.969 47.619 0.00 0.00 38.29 3.53
2356 2624 1.719600 GCTGTTGCATCTCTTCGTCT 58.280 50.000 0.00 0.00 39.41 4.18
2405 2679 0.412244 TGGAGCACACTAGGGTAGGT 59.588 55.000 0.00 0.00 0.00 3.08
2641 2917 7.260603 ACTCACAAAAGAACTTCTCCAATTTG 58.739 34.615 10.30 10.30 32.73 2.32
3195 3660 2.270986 GCTCCAAGTGTGGGCAAGG 61.271 63.158 0.00 0.00 46.01 3.61
3269 3734 9.793252 GTATTTGTGTGAGCAATTCATTAGAAT 57.207 29.630 0.00 0.00 46.20 2.40
3400 3872 5.349817 CAGCGAATTCTAGCTCTTTCAGAAA 59.650 40.000 3.52 0.00 42.52 2.52
3502 3974 3.858247 CACACTGCTCATCATCTCTCAA 58.142 45.455 0.00 0.00 0.00 3.02
3554 4026 1.804151 CCTTGCGTGGAAATCTCGAAA 59.196 47.619 0.00 0.00 0.00 3.46
3632 4107 6.103797 AGTCATCCCTCCTTATCCATGAAAAT 59.896 38.462 0.00 0.00 0.00 1.82
3650 4125 3.845781 TTGGCCTGAGATAAGTCATCC 57.154 47.619 3.32 0.00 33.75 3.51
3680 4157 1.881072 CGGGATGATGAAGATGGCCTG 60.881 57.143 3.32 0.00 0.00 4.85
3684 4161 0.952497 CGCCGGGATGATGAAGATGG 60.952 60.000 2.18 0.00 0.00 3.51
3696 4173 1.826921 GTCATAGAGACCGCCGGGA 60.827 63.158 8.57 0.00 41.56 5.14
3699 4176 0.386100 CATCGTCATAGAGACCGCCG 60.386 60.000 0.00 0.00 44.66 6.46
3706 4183 6.207614 TGAATTACTCCCTCATCGTCATAGAG 59.792 42.308 0.00 0.00 0.00 2.43
3709 4186 6.071334 GGATGAATTACTCCCTCATCGTCATA 60.071 42.308 5.47 0.00 44.21 2.15
3741 4218 8.815565 ACATATCTACTGATACATACCCTCAG 57.184 38.462 0.00 0.00 41.69 3.35
3754 4231 9.159254 ACCTTGGATCAAATACATATCTACTGA 57.841 33.333 0.00 0.00 0.00 3.41
3761 4238 9.273016 CTCGTAAACCTTGGATCAAATACATAT 57.727 33.333 0.00 0.00 0.00 1.78
3767 4244 4.630069 CGACTCGTAAACCTTGGATCAAAT 59.370 41.667 0.00 0.00 0.00 2.32
3774 4251 1.069022 TCGTCGACTCGTAAACCTTGG 60.069 52.381 14.70 0.00 0.00 3.61
3777 4254 1.462670 GACTCGTCGACTCGTAAACCT 59.537 52.381 14.70 0.00 0.00 3.50
3799 4276 4.479056 AGTCTATGAGTCTCTACCTTGGGA 59.521 45.833 0.65 0.00 0.00 4.37
3800 4277 4.798882 AGTCTATGAGTCTCTACCTTGGG 58.201 47.826 0.65 0.00 0.00 4.12
3801 4278 7.942341 AGATTAGTCTATGAGTCTCTACCTTGG 59.058 40.741 0.65 0.00 31.36 3.61
3802 4279 8.918202 AGATTAGTCTATGAGTCTCTACCTTG 57.082 38.462 0.65 0.00 31.36 3.61
3804 4281 9.610104 TCTAGATTAGTCTATGAGTCTCTACCT 57.390 37.037 0.65 0.00 36.40 3.08
3805 4282 9.649167 GTCTAGATTAGTCTATGAGTCTCTACC 57.351 40.741 0.00 0.00 36.40 3.18
3817 4294 9.562408 CCATGTTGACTAGTCTAGATTAGTCTA 57.438 37.037 35.91 30.71 45.37 2.59
3818 4295 8.056400 ACCATGTTGACTAGTCTAGATTAGTCT 58.944 37.037 35.91 23.28 45.37 3.24
3819 4296 8.228035 ACCATGTTGACTAGTCTAGATTAGTC 57.772 38.462 32.91 32.91 45.36 2.59
3942 4464 3.136763 CAGTGGCTAGTCCTATTGCATG 58.863 50.000 0.00 0.00 35.26 4.06
3955 4477 5.455872 AGGCTAGTATTTAGACAGTGGCTA 58.544 41.667 0.01 0.01 0.00 3.93
3978 4500 2.048222 GAGTGCTGCGTGGTGCTA 60.048 61.111 0.00 0.00 46.63 3.49
3994 4517 2.037687 CAAATGGGCCAGCTGGGA 59.962 61.111 33.46 0.00 40.01 4.37
4026 4549 1.693103 GGCTGGGGGCTAAGTAGGT 60.693 63.158 0.00 0.00 41.46 3.08
4046 4569 1.079621 TCGGGAGCTAGGGTTCCAA 59.920 57.895 0.00 0.00 43.44 3.53
4191 4722 2.926329 AGAGAGAGAGGAGAGGAAAGGT 59.074 50.000 0.00 0.00 0.00 3.50
4324 4863 3.680786 CACCCACTGCCGAGACGA 61.681 66.667 0.00 0.00 0.00 4.20
4469 5008 6.401903 CGTGTAGACTACAAATACAGTCGAGT 60.402 42.308 16.84 0.00 44.77 4.18
4605 5150 1.552792 TGGTACATCGAGATTGTGCCA 59.447 47.619 19.55 19.55 43.96 4.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.