Multiple sequence alignment - TraesCS5A01G150500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G150500 chr5A 100.000 4719 0 0 1 4719 328084754 328080036 0.000000e+00 8715.0
1 TraesCS5A01G150500 chr5A 100.000 358 0 0 5072 5429 328079683 328079326 0.000000e+00 662.0
2 TraesCS5A01G150500 chr5A 93.333 195 8 3 4043 4234 328030880 328030688 3.200000e-72 283.0
3 TraesCS5A01G150500 chr5A 95.783 166 5 2 5265 5429 123269769 123269933 3.220000e-67 267.0
4 TraesCS5A01G150500 chr5A 98.026 152 2 1 5279 5429 585952228 585952379 4.170000e-66 263.0
5 TraesCS5A01G150500 chr5A 100.000 139 0 0 5291 5429 623899806 623899668 1.940000e-64 257.0
6 TraesCS5A01G150500 chr5A 91.111 45 4 0 3403 3447 77787483 77787527 1.630000e-05 62.1
7 TraesCS5A01G150500 chr5A 94.737 38 2 0 271 308 130702789 130702826 5.870000e-05 60.2
8 TraesCS5A01G150500 chr5D 93.891 3421 120 47 1333 4714 243882320 243878950 0.000000e+00 5077.0
9 TraesCS5A01G150500 chr5D 95.073 954 43 2 269 1221 243883367 243882417 0.000000e+00 1498.0
10 TraesCS5A01G150500 chr5D 96.654 269 9 0 1 269 243883718 243883450 1.070000e-121 448.0
11 TraesCS5A01G150500 chr5D 91.011 89 8 0 5119 5207 243878644 243878556 2.660000e-23 121.0
12 TraesCS5A01G150500 chr5D 92.500 40 3 0 3403 3442 81734457 81734496 2.110000e-04 58.4
13 TraesCS5A01G150500 chr5B 97.011 2810 58 10 1411 4220 277131205 277128422 0.000000e+00 4700.0
14 TraesCS5A01G150500 chr5B 89.965 568 53 4 509 1074 277239849 277239284 0.000000e+00 730.0
15 TraesCS5A01G150500 chr5B 88.701 531 58 2 693 1221 277132277 277131747 0.000000e+00 647.0
16 TraesCS5A01G150500 chr5B 88.764 267 30 0 1 267 82313086 82313352 1.460000e-85 327.0
17 TraesCS5A01G150500 chr5B 90.341 176 11 5 522 693 277132862 277132689 5.470000e-55 226.0
18 TraesCS5A01G150500 chr6B 90.391 281 24 2 1963 2241 635002280 635002559 3.090000e-97 366.0
19 TraesCS5A01G150500 chr6B 85.515 359 35 7 1976 2334 578773696 578774037 5.170000e-95 359.0
20 TraesCS5A01G150500 chr6B 91.235 251 22 0 2084 2334 719099995 719100245 5.210000e-90 342.0
21 TraesCS5A01G150500 chr6B 93.529 170 6 3 5260 5429 112863440 112863604 1.170000e-61 248.0
22 TraesCS5A01G150500 chr3B 90.672 268 25 0 1 268 94686139 94685872 1.860000e-94 357.0
23 TraesCS5A01G150500 chr3B 90.000 270 26 1 1 269 507432725 507432994 1.120000e-91 348.0
24 TraesCS5A01G150500 chr7D 85.143 350 37 5 1985 2334 561874525 561874859 1.450000e-90 344.0
25 TraesCS5A01G150500 chr7D 96.795 156 3 2 5274 5429 15416086 15415933 5.390000e-65 259.0
26 TraesCS5A01G150500 chr7D 92.000 50 4 0 443 492 130887083 130887132 2.710000e-08 71.3
27 TraesCS5A01G150500 chr7D 97.297 37 1 0 271 307 35983982 35984018 4.540000e-06 63.9
28 TraesCS5A01G150500 chr2D 84.680 359 38 7 1976 2334 22814693 22815034 5.210000e-90 342.0
29 TraesCS5A01G150500 chr2D 92.308 182 14 0 2535 2716 453569726 453569545 5.390000e-65 259.0
30 TraesCS5A01G150500 chr2D 89.535 86 9 0 2333 2418 453569433 453569518 5.750000e-20 110.0
31 TraesCS5A01G150500 chr2D 95.000 40 1 1 271 309 545304635 545304674 1.630000e-05 62.1
32 TraesCS5A01G150500 chr2B 87.956 274 29 4 2968 3239 159480258 159480529 2.440000e-83 320.0
33 TraesCS5A01G150500 chr2B 96.000 50 2 0 442 491 514887304 514887353 1.250000e-11 82.4
34 TraesCS5A01G150500 chr2B 89.796 49 5 0 443 491 765293132 765293180 4.540000e-06 63.9
35 TraesCS5A01G150500 chr2B 92.683 41 1 2 271 310 487812636 487812597 2.110000e-04 58.4
36 TraesCS5A01G150500 chr1B 91.379 232 20 0 1 232 91826633 91826864 8.780000e-83 318.0
37 TraesCS5A01G150500 chrUn 89.600 250 25 1 1 250 71385966 71385718 3.160000e-82 316.0
38 TraesCS5A01G150500 chr6D 88.104 269 29 2 1 267 13300520 13300787 3.160000e-82 316.0
39 TraesCS5A01G150500 chr6D 92.857 42 1 2 271 310 331449415 331449456 5.870000e-05 60.2
40 TraesCS5A01G150500 chr6D 90.909 44 2 2 271 313 183026121 183026079 2.110000e-04 58.4
41 TraesCS5A01G150500 chr1A 89.286 252 26 1 1 252 478253775 478254025 1.140000e-81 315.0
42 TraesCS5A01G150500 chr1A 95.181 166 7 1 5264 5429 107116592 107116428 1.500000e-65 261.0
43 TraesCS5A01G150500 chr3D 86.792 265 35 0 1 265 456200355 456200091 4.110000e-76 296.0
44 TraesCS5A01G150500 chr2A 97.403 154 3 1 5277 5429 604889686 604889839 1.500000e-65 261.0
45 TraesCS5A01G150500 chr2A 91.758 182 15 0 2535 2716 596358066 596357885 2.510000e-63 254.0
46 TraesCS5A01G150500 chr2A 87.209 86 11 0 2333 2418 596357774 596357859 1.240000e-16 99.0
47 TraesCS5A01G150500 chr4D 96.795 156 3 2 5275 5429 40549556 40549402 5.390000e-65 259.0
48 TraesCS5A01G150500 chr4A 95.062 162 6 2 5268 5429 446359235 446359394 2.510000e-63 254.0
49 TraesCS5A01G150500 chr4A 91.837 49 4 0 443 491 743841477 743841429 9.760000e-08 69.4
50 TraesCS5A01G150500 chr4A 97.222 36 1 0 270 305 73269036 73269001 1.630000e-05 62.1
51 TraesCS5A01G150500 chr4A 92.683 41 1 1 271 309 566729987 566729947 2.110000e-04 58.4
52 TraesCS5A01G150500 chr4B 86.458 192 26 0 301 492 187012007 187012198 1.530000e-50 211.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G150500 chr5A 328079326 328084754 5428 True 4688.500000 8715 100.000000 1 5429 2 chr5A.!!$R3 5428
1 TraesCS5A01G150500 chr5D 243878556 243883718 5162 True 1786.000000 5077 94.157250 1 5207 4 chr5D.!!$R1 5206
2 TraesCS5A01G150500 chr5B 277128422 277132862 4440 True 1857.666667 4700 92.017667 522 4220 3 chr5B.!!$R2 3698
3 TraesCS5A01G150500 chr5B 277239284 277239849 565 True 730.000000 730 89.965000 509 1074 1 chr5B.!!$R1 565

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
311 395 0.898320 ACTCCCTCATCGACCACTTG 59.102 55.0 0.00 0.00 0.00 3.16 F
1280 1813 0.179034 GATGGGCAGGCTAGAGTTGG 60.179 60.0 0.00 0.00 0.00 3.77 F
2864 3729 0.179134 AGCATTACTCGACGCTGACC 60.179 55.0 0.00 0.00 32.33 4.02 F
4274 5168 0.395312 TGTGGGAGGAGAAACGGTTC 59.605 55.0 4.63 4.63 0.00 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2303 3168 0.325296 AGGAGGCGAGGATGTTGGTA 60.325 55.0 0.0 0.0 0.00 3.25 R
2910 3775 0.465824 CCTGTCGGGTCGTAGAGGAT 60.466 60.0 0.0 0.0 36.95 3.24 R
4277 5171 0.399806 ATCTCCAGCCTTCCTCCTCC 60.400 60.0 0.0 0.0 0.00 4.30 R
5239 6141 0.030807 TGCTGGATGAGGAGGATGGA 60.031 55.0 0.0 0.0 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.600790 TCGAAGAGGTCAAACCCTACA 58.399 47.619 0.00 0.00 39.75 2.74
26 27 3.679083 CGAAGAGGTCAAACCCTACATCC 60.679 52.174 0.00 0.00 39.75 3.51
99 100 3.381949 CGAGATCGGATGAACTAAACCC 58.618 50.000 0.00 0.00 35.37 4.11
102 103 5.563085 CGAGATCGGATGAACTAAACCCTAG 60.563 48.000 0.00 0.00 35.37 3.02
133 134 1.328430 GGTGGTTCTCCCCCTCTACG 61.328 65.000 0.00 0.00 0.00 3.51
148 149 2.688958 CTCTACGGACTAAACCCTCTGG 59.311 54.545 0.00 0.00 37.80 3.86
226 227 1.790387 CACACGAGCTAAGCCAAGC 59.210 57.895 0.00 0.00 43.11 4.01
311 395 0.898320 ACTCCCTCATCGACCACTTG 59.102 55.000 0.00 0.00 0.00 3.16
344 428 3.712907 GGCTCACCCTAACGGCCA 61.713 66.667 2.24 0.00 42.08 5.36
373 457 4.758251 CGCCATCAGCCGTGTCCA 62.758 66.667 0.00 0.00 38.78 4.02
388 472 3.443044 TCCAACGTGGACCTGACTA 57.557 52.632 0.00 0.00 42.67 2.59
390 474 1.202964 TCCAACGTGGACCTGACTAGA 60.203 52.381 0.00 0.00 42.67 2.43
427 511 7.587028 TGTCGTAAAAAGGCTTAAAATGTAACG 59.413 33.333 0.00 3.14 0.00 3.18
428 512 7.798052 GTCGTAAAAAGGCTTAAAATGTAACGA 59.202 33.333 0.00 5.42 0.00 3.85
433 517 9.535878 AAAAAGGCTTAAAATGTAACGATTTGA 57.464 25.926 0.00 0.00 0.00 2.69
506 590 9.145865 TGAAAGAGTAATTTTGAACAACAAACC 57.854 29.630 0.00 0.00 46.32 3.27
507 591 9.145865 GAAAGAGTAATTTTGAACAACAAACCA 57.854 29.630 0.00 0.00 46.32 3.67
515 599 8.785329 ATTTTGAACAACAAACCAATACTTGT 57.215 26.923 0.00 0.00 46.32 3.16
517 601 6.516739 TGAACAACAAACCAATACTTGTGA 57.483 33.333 0.00 0.00 35.95 3.58
698 1198 2.614481 GGAGTTTCGGGTCAGTATGCAA 60.614 50.000 0.00 0.00 34.76 4.08
747 1248 4.520111 TGTAGATGAATATGCCCACATTGC 59.480 41.667 0.00 0.00 37.74 3.56
879 1380 1.355720 AGTGGTGCAATTAGAGGGCTT 59.644 47.619 0.00 0.00 0.00 4.35
1034 1535 9.869844 GTCGAGATTTGAATTAAGATATTGTGG 57.130 33.333 0.00 0.00 0.00 4.17
1041 1542 7.514784 TGAATTAAGATATTGTGGCATCTGG 57.485 36.000 0.00 0.00 31.87 3.86
1042 1543 7.062322 TGAATTAAGATATTGTGGCATCTGGT 58.938 34.615 0.00 0.00 31.87 4.00
1088 1589 7.201696 GGAAAATTGAGATATTTGCGAGTACCA 60.202 37.037 0.00 0.00 0.00 3.25
1120 1621 2.048603 GGGGCAGCTCGAGCAATTT 61.049 57.895 36.87 15.76 45.16 1.82
1181 1683 5.747342 TGTAGTTGGTATGGGGTTTATGTC 58.253 41.667 0.00 0.00 0.00 3.06
1196 1698 2.957402 ATGTCTGCCAAAGGAAGTGA 57.043 45.000 0.00 0.00 28.40 3.41
1201 1703 3.760684 GTCTGCCAAAGGAAGTGATCAAT 59.239 43.478 0.00 0.00 28.40 2.57
1243 1776 4.457257 GCCCTCTCAATACTTGGATTATGC 59.543 45.833 0.00 0.00 0.00 3.14
1269 1802 6.044682 GGAATCAAGTTTTTATGATGGGCAG 58.955 40.000 0.00 0.00 36.44 4.85
1270 1803 5.603170 ATCAAGTTTTTATGATGGGCAGG 57.397 39.130 0.00 0.00 35.06 4.85
1271 1804 3.195396 TCAAGTTTTTATGATGGGCAGGC 59.805 43.478 0.00 0.00 0.00 4.85
1273 1806 4.249638 AGTTTTTATGATGGGCAGGCTA 57.750 40.909 0.00 0.00 0.00 3.93
1275 1808 4.079787 AGTTTTTATGATGGGCAGGCTAGA 60.080 41.667 0.00 0.00 0.00 2.43
1276 1809 3.777106 TTTATGATGGGCAGGCTAGAG 57.223 47.619 0.00 0.00 0.00 2.43
1277 1810 2.405618 TATGATGGGCAGGCTAGAGT 57.594 50.000 0.00 0.00 0.00 3.24
1278 1811 1.516110 ATGATGGGCAGGCTAGAGTT 58.484 50.000 0.00 0.00 0.00 3.01
1279 1812 0.543277 TGATGGGCAGGCTAGAGTTG 59.457 55.000 0.00 0.00 0.00 3.16
1280 1813 0.179034 GATGGGCAGGCTAGAGTTGG 60.179 60.000 0.00 0.00 0.00 3.77
1281 1814 0.916358 ATGGGCAGGCTAGAGTTGGT 60.916 55.000 0.00 0.00 0.00 3.67
1282 1815 1.222113 GGGCAGGCTAGAGTTGGTC 59.778 63.158 0.00 0.00 0.00 4.02
1283 1816 1.222113 GGCAGGCTAGAGTTGGTCC 59.778 63.158 0.00 0.00 0.00 4.46
1284 1817 1.268283 GGCAGGCTAGAGTTGGTCCT 61.268 60.000 0.00 0.00 0.00 3.85
1285 1818 1.486211 GCAGGCTAGAGTTGGTCCTA 58.514 55.000 0.00 0.00 0.00 2.94
1286 1819 1.410882 GCAGGCTAGAGTTGGTCCTAG 59.589 57.143 0.00 0.00 36.38 3.02
1310 1843 7.832769 AGTACTTTACAAGCTTTGGTGAAAAA 58.167 30.769 0.00 0.00 34.12 1.94
1328 1861 4.568152 AAAAATGTGAAGCTAGCGTTGT 57.432 36.364 9.55 0.00 0.00 3.32
1331 1864 1.948104 TGTGAAGCTAGCGTTGTGTT 58.052 45.000 9.55 0.00 0.00 3.32
1332 1865 2.285083 TGTGAAGCTAGCGTTGTGTTT 58.715 42.857 9.55 0.00 0.00 2.83
1333 1866 2.680841 TGTGAAGCTAGCGTTGTGTTTT 59.319 40.909 9.55 0.00 0.00 2.43
1334 1867 3.127895 TGTGAAGCTAGCGTTGTGTTTTT 59.872 39.130 9.55 0.00 0.00 1.94
1335 1868 3.482110 GTGAAGCTAGCGTTGTGTTTTTG 59.518 43.478 9.55 0.00 0.00 2.44
1336 1869 2.774439 AGCTAGCGTTGTGTTTTTGG 57.226 45.000 9.55 0.00 0.00 3.28
1337 1870 1.128513 GCTAGCGTTGTGTTTTTGGC 58.871 50.000 0.00 0.00 0.00 4.52
1338 1871 1.535015 GCTAGCGTTGTGTTTTTGGCA 60.535 47.619 0.00 0.00 0.00 4.92
1339 1872 2.803451 CTAGCGTTGTGTTTTTGGCAA 58.197 42.857 0.00 0.00 0.00 4.52
1340 1873 2.086054 AGCGTTGTGTTTTTGGCAAA 57.914 40.000 8.93 8.93 0.00 3.68
1341 1874 1.729517 AGCGTTGTGTTTTTGGCAAAC 59.270 42.857 13.10 3.38 0.00 2.93
1346 1879 1.275291 TGTGTTTTTGGCAAACGGGAA 59.725 42.857 13.10 1.07 33.05 3.97
1348 1881 1.134670 TGTTTTTGGCAAACGGGAAGG 60.135 47.619 13.10 0.00 33.05 3.46
1350 1883 1.486211 TTTTGGCAAACGGGAAGGAA 58.514 45.000 13.10 0.00 0.00 3.36
1367 1900 6.427853 GGGAAGGAATTGTTTGAATTTGGAAG 59.572 38.462 0.00 0.00 0.00 3.46
1368 1901 6.427853 GGAAGGAATTGTTTGAATTTGGAAGG 59.572 38.462 0.00 0.00 0.00 3.46
1370 1903 5.062528 GGAATTGTTTGAATTTGGAAGGCA 58.937 37.500 0.00 0.00 0.00 4.75
1380 1913 1.734655 TTGGAAGGCAGGAGAAGAGT 58.265 50.000 0.00 0.00 0.00 3.24
1428 2293 2.798499 CGTCCACACGGCTAAGAATAGG 60.798 54.545 0.00 0.00 42.73 2.57
1469 2334 2.108952 AGCCAAACAAGAAGAGGACCAT 59.891 45.455 0.00 0.00 0.00 3.55
1505 2370 0.809385 ACGTAGTGTCATCCTCACCG 59.191 55.000 0.00 0.00 42.51 4.94
2120 2985 1.946156 CATCACCGAGATCGCCGTG 60.946 63.158 10.76 10.76 38.18 4.94
2303 3168 2.034879 CAAGTCGCCCGCATTCACT 61.035 57.895 0.00 0.00 0.00 3.41
2309 3174 1.800681 GCCCGCATTCACTACCAAC 59.199 57.895 0.00 0.00 0.00 3.77
2864 3729 0.179134 AGCATTACTCGACGCTGACC 60.179 55.000 0.00 0.00 32.33 4.02
2888 3753 1.746239 CATGGTGCTCATCACGGCA 60.746 57.895 0.00 0.00 46.56 5.69
2910 3775 2.125552 CCACGCCGCTCATCAAGA 60.126 61.111 0.00 0.00 0.00 3.02
2939 3804 4.796231 CCGACAGGGAGGTTCGCG 62.796 72.222 0.00 0.00 38.47 5.87
3151 4016 1.222115 AAGCCGCACAAGAAGTCGTC 61.222 55.000 0.00 0.00 0.00 4.20
3152 4017 2.668280 GCCGCACAAGAAGTCGTCC 61.668 63.158 0.00 0.00 0.00 4.79
3153 4018 1.300620 CCGCACAAGAAGTCGTCCA 60.301 57.895 0.00 0.00 0.00 4.02
3154 4019 1.557443 CCGCACAAGAAGTCGTCCAC 61.557 60.000 0.00 0.00 0.00 4.02
3155 4020 1.853319 GCACAAGAAGTCGTCCACG 59.147 57.895 0.00 0.00 41.45 4.94
3156 4021 0.874607 GCACAAGAAGTCGTCCACGT 60.875 55.000 0.00 0.00 40.80 4.49
3347 4212 1.374252 CCCGTTCCACAAGTCCTCG 60.374 63.158 0.00 0.00 0.00 4.63
3689 4554 1.440618 TCTGGCAAAGGTACAGGGAA 58.559 50.000 0.00 0.00 33.19 3.97
3740 4605 4.393778 GAGGACGGGGAGGGGACA 62.394 72.222 0.00 0.00 0.00 4.02
4086 4951 7.068226 AGCAAGGTAATTTTGTTCACTTGTAGT 59.932 33.333 0.00 0.00 36.96 2.73
4088 4953 9.878599 CAAGGTAATTTTGTTCACTTGTAGTAG 57.121 33.333 0.00 0.00 31.73 2.57
4089 4954 8.095937 AGGTAATTTTGTTCACTTGTAGTAGC 57.904 34.615 0.00 0.00 0.00 3.58
4090 4955 7.717875 AGGTAATTTTGTTCACTTGTAGTAGCA 59.282 33.333 0.00 0.00 0.00 3.49
4127 4992 4.584327 ATTGTTACTTTCCCTGTGCAAC 57.416 40.909 0.00 0.00 37.35 4.17
4236 5120 4.493547 TGTTGCACCTTGCTATATTTTGC 58.506 39.130 0.00 0.00 45.31 3.68
4237 5121 4.021632 TGTTGCACCTTGCTATATTTTGCA 60.022 37.500 0.00 0.00 45.31 4.08
4239 5123 5.341872 TGCACCTTGCTATATTTTGCAAT 57.658 34.783 0.00 0.00 46.20 3.56
4241 5125 7.053316 TGCACCTTGCTATATTTTGCAATAT 57.947 32.000 0.00 3.39 46.20 1.28
4242 5126 6.924612 TGCACCTTGCTATATTTTGCAATATG 59.075 34.615 12.07 8.00 46.20 1.78
4266 5160 4.453480 AAGTCAATTTTGTGGGAGGAGA 57.547 40.909 0.00 0.00 0.00 3.71
4274 5168 0.395312 TGTGGGAGGAGAAACGGTTC 59.605 55.000 4.63 4.63 0.00 3.62
4277 5171 0.108756 GGGAGGAGAAACGGTTCGAG 60.109 60.000 7.71 0.00 38.90 4.04
4278 5172 0.108756 GGAGGAGAAACGGTTCGAGG 60.109 60.000 7.71 0.00 38.90 4.63
4280 5174 0.889306 AGGAGAAACGGTTCGAGGAG 59.111 55.000 7.71 0.00 38.90 3.69
4283 5177 0.889306 AGAAACGGTTCGAGGAGGAG 59.111 55.000 7.71 0.00 38.90 3.69
4286 5180 0.541296 AACGGTTCGAGGAGGAGGAA 60.541 55.000 0.00 0.00 0.00 3.36
4289 5183 1.518302 GTTCGAGGAGGAGGAAGGC 59.482 63.158 0.00 0.00 0.00 4.35
4305 5199 4.408596 AGGAAGGCTGGAGATAGAAGAAAG 59.591 45.833 0.00 0.00 0.00 2.62
4307 5201 5.104735 GGAAGGCTGGAGATAGAAGAAAGAA 60.105 44.000 0.00 0.00 0.00 2.52
4308 5202 6.380079 AAGGCTGGAGATAGAAGAAAGAAA 57.620 37.500 0.00 0.00 0.00 2.52
4310 5204 6.967897 AGGCTGGAGATAGAAGAAAGAAAAT 58.032 36.000 0.00 0.00 0.00 1.82
4311 5205 7.053498 AGGCTGGAGATAGAAGAAAGAAAATC 58.947 38.462 0.00 0.00 0.00 2.17
4312 5206 6.018343 GGCTGGAGATAGAAGAAAGAAAATCG 60.018 42.308 0.00 0.00 0.00 3.34
4313 5207 6.758886 GCTGGAGATAGAAGAAAGAAAATCGA 59.241 38.462 0.00 0.00 0.00 3.59
4314 5208 7.254286 GCTGGAGATAGAAGAAAGAAAATCGAC 60.254 40.741 0.00 0.00 0.00 4.20
4315 5209 7.841956 TGGAGATAGAAGAAAGAAAATCGACT 58.158 34.615 0.00 0.00 0.00 4.18
4316 5210 7.761704 TGGAGATAGAAGAAAGAAAATCGACTG 59.238 37.037 0.00 0.00 0.00 3.51
4317 5211 7.762159 GGAGATAGAAGAAAGAAAATCGACTGT 59.238 37.037 0.00 0.00 0.00 3.55
4318 5212 9.145865 GAGATAGAAGAAAGAAAATCGACTGTT 57.854 33.333 0.00 0.00 0.00 3.16
4320 5214 8.833231 ATAGAAGAAAGAAAATCGACTGTTCA 57.167 30.769 7.17 0.00 0.00 3.18
4387 5285 6.604735 ATTTTTGGACGACTGACATATAGC 57.395 37.500 0.00 0.00 0.00 2.97
4422 5324 2.112297 GGACTTTGACCCACGGCA 59.888 61.111 0.00 0.00 0.00 5.69
4426 5328 0.744281 ACTTTGACCCACGGCAAAAG 59.256 50.000 0.00 4.83 32.00 2.27
4430 5332 1.698506 TGACCCACGGCAAAAGAAAT 58.301 45.000 0.00 0.00 0.00 2.17
4431 5333 2.865079 TGACCCACGGCAAAAGAAATA 58.135 42.857 0.00 0.00 0.00 1.40
4432 5334 3.223435 TGACCCACGGCAAAAGAAATAA 58.777 40.909 0.00 0.00 0.00 1.40
4433 5335 3.637229 TGACCCACGGCAAAAGAAATAAA 59.363 39.130 0.00 0.00 0.00 1.40
4435 5337 4.627058 ACCCACGGCAAAAGAAATAAAAG 58.373 39.130 0.00 0.00 0.00 2.27
4437 5339 4.502431 CCCACGGCAAAAGAAATAAAAGGT 60.502 41.667 0.00 0.00 0.00 3.50
4438 5340 4.684242 CCACGGCAAAAGAAATAAAAGGTC 59.316 41.667 0.00 0.00 0.00 3.85
4440 5342 5.402270 CACGGCAAAAGAAATAAAAGGTCAG 59.598 40.000 0.00 0.00 0.00 3.51
4443 5345 6.308766 CGGCAAAAGAAATAAAAGGTCAGATG 59.691 38.462 0.00 0.00 0.00 2.90
4444 5346 7.378181 GGCAAAAGAAATAAAAGGTCAGATGA 58.622 34.615 0.00 0.00 0.00 2.92
4445 5347 7.872483 GGCAAAAGAAATAAAAGGTCAGATGAA 59.128 33.333 0.00 0.00 0.00 2.57
4457 5359 9.696917 AAAAGGTCAGATGAAAACAAATATCAC 57.303 29.630 0.00 0.00 0.00 3.06
4458 5360 8.641498 AAGGTCAGATGAAAACAAATATCACT 57.359 30.769 0.00 0.00 0.00 3.41
4459 5361 8.641498 AGGTCAGATGAAAACAAATATCACTT 57.359 30.769 0.00 0.00 0.00 3.16
4460 5362 9.082313 AGGTCAGATGAAAACAAATATCACTTT 57.918 29.630 0.00 0.00 0.00 2.66
4461 5363 9.346725 GGTCAGATGAAAACAAATATCACTTTC 57.653 33.333 0.00 0.00 0.00 2.62
4490 5392 6.370453 ACTTGGGAAAACTATACCAACAACT 58.630 36.000 0.00 0.00 38.02 3.16
4532 5434 5.393068 ACCAACAATCATATGGAGGTGAT 57.607 39.130 2.13 0.00 37.66 3.06
4538 5440 8.517878 CAACAATCATATGGAGGTGATTAATCC 58.482 37.037 12.90 4.44 41.70 3.01
4539 5441 7.993416 ACAATCATATGGAGGTGATTAATCCT 58.007 34.615 12.90 4.20 41.70 3.24
4547 5449 5.024785 GAGGTGATTAATCCTCGGTCTTT 57.975 43.478 12.90 0.00 40.36 2.52
4573 5475 4.951715 TCTTTGGACTCTATGCGTTAGGTA 59.048 41.667 0.00 0.00 0.00 3.08
4576 5478 3.501062 TGGACTCTATGCGTTAGGTATCG 59.499 47.826 0.00 0.00 0.00 2.92
4582 5484 6.092955 TCTATGCGTTAGGTATCGGAAAAT 57.907 37.500 0.00 0.00 0.00 1.82
4600 5502 6.507023 GGAAAATGTTTCAGTTGTCAGTCAT 58.493 36.000 3.35 0.00 0.00 3.06
4606 5508 7.156876 TGTTTCAGTTGTCAGTCATTTTTCT 57.843 32.000 0.00 0.00 0.00 2.52
4615 5517 4.821805 GTCAGTCATTTTTCTCAGGAACCA 59.178 41.667 0.00 0.00 0.00 3.67
4616 5518 5.474876 GTCAGTCATTTTTCTCAGGAACCAT 59.525 40.000 0.00 0.00 0.00 3.55
4624 5526 5.768980 TTTCTCAGGAACCATCAGATCTT 57.231 39.130 0.00 0.00 0.00 2.40
4627 5529 5.028802 TCTCAGGAACCATCAGATCTTTCT 58.971 41.667 0.00 0.00 0.00 2.52
4628 5530 5.128499 TCTCAGGAACCATCAGATCTTTCTC 59.872 44.000 0.00 0.00 0.00 2.87
4630 5532 5.249163 TCAGGAACCATCAGATCTTTCTCAA 59.751 40.000 0.00 0.00 0.00 3.02
4631 5533 5.942236 CAGGAACCATCAGATCTTTCTCAAA 59.058 40.000 0.00 0.00 0.00 2.69
4632 5534 5.942826 AGGAACCATCAGATCTTTCTCAAAC 59.057 40.000 0.00 0.00 0.00 2.93
4633 5535 5.163814 GGAACCATCAGATCTTTCTCAAACG 60.164 44.000 0.00 0.00 0.00 3.60
4634 5536 4.256920 ACCATCAGATCTTTCTCAAACGG 58.743 43.478 0.00 0.00 0.00 4.44
4642 5544 2.100087 TCTTTCTCAAACGGCCCAAAAC 59.900 45.455 0.00 0.00 0.00 2.43
4657 5559 5.105392 GGCCCAAAACAGATCATTGTTCATA 60.105 40.000 0.00 0.00 40.24 2.15
4660 5562 7.223387 GCCCAAAACAGATCATTGTTCATATTC 59.777 37.037 1.21 0.00 40.24 1.75
4677 5579 5.966935 TCATATTCAACCTCCCTCTCTCTTT 59.033 40.000 0.00 0.00 0.00 2.52
4681 5583 3.328050 TCAACCTCCCTCTCTCTTTTTCC 59.672 47.826 0.00 0.00 0.00 3.13
4685 5587 3.055458 CCTCCCTCTCTCTTTTTCCTCAC 60.055 52.174 0.00 0.00 0.00 3.51
4688 5590 1.989165 CTCTCTCTTTTTCCTCACGCG 59.011 52.381 3.53 3.53 0.00 6.01
4700 5602 4.227134 CACGCGCCTCCAGCCTAT 62.227 66.667 5.73 0.00 38.78 2.57
4714 5616 3.476419 CTATCCCGCCCCAACCGT 61.476 66.667 0.00 0.00 0.00 4.83
4715 5617 3.456105 CTATCCCGCCCCAACCGTC 62.456 68.421 0.00 0.00 0.00 4.79
5088 5990 2.445614 TCTTCCTCGCCTCCACCT 59.554 61.111 0.00 0.00 0.00 4.00
5089 5991 1.695465 TCTTCCTCGCCTCCACCTA 59.305 57.895 0.00 0.00 0.00 3.08
5090 5992 0.395862 TCTTCCTCGCCTCCACCTAG 60.396 60.000 0.00 0.00 0.00 3.02
5091 5993 1.381327 TTCCTCGCCTCCACCTAGG 60.381 63.158 7.41 7.41 39.87 3.02
5092 5994 1.870941 TTCCTCGCCTCCACCTAGGA 61.871 60.000 17.98 0.00 46.75 2.94
5100 6002 3.127099 TCCACCTAGGATACCGCAG 57.873 57.895 17.98 0.00 43.07 5.18
5101 6003 1.113517 TCCACCTAGGATACCGCAGC 61.114 60.000 17.98 0.00 43.07 5.25
5102 6004 1.115930 CCACCTAGGATACCGCAGCT 61.116 60.000 17.98 0.00 41.22 4.24
5103 6005 0.315568 CACCTAGGATACCGCAGCTC 59.684 60.000 17.98 0.00 37.17 4.09
5104 6006 0.106167 ACCTAGGATACCGCAGCTCA 60.106 55.000 17.98 0.00 37.17 4.26
5105 6007 1.040646 CCTAGGATACCGCAGCTCAA 58.959 55.000 1.05 0.00 37.17 3.02
5106 6008 1.620819 CCTAGGATACCGCAGCTCAAT 59.379 52.381 1.05 0.00 37.17 2.57
5107 6009 2.611473 CCTAGGATACCGCAGCTCAATG 60.611 54.545 1.05 0.00 37.17 2.82
5108 6010 0.533755 AGGATACCGCAGCTCAATGC 60.534 55.000 0.00 0.00 42.95 3.56
5109 6011 1.510480 GGATACCGCAGCTCAATGCC 61.510 60.000 0.00 0.00 43.49 4.40
5110 6012 1.835483 GATACCGCAGCTCAATGCCG 61.835 60.000 0.00 0.00 43.49 5.69
5113 6015 4.233635 CGCAGCTCAATGCCGCTC 62.234 66.667 0.00 0.00 42.56 5.03
5114 6016 4.233635 GCAGCTCAATGCCGCTCG 62.234 66.667 0.00 0.00 41.58 5.03
5115 6017 4.233635 CAGCTCAATGCCGCTCGC 62.234 66.667 0.00 0.00 44.23 5.03
5150 6052 2.864471 AACACCTCACGTCGTCCCC 61.864 63.158 0.00 0.00 0.00 4.81
5158 6060 3.622826 CGTCGTCCCCACCTTGGT 61.623 66.667 0.00 0.00 35.17 3.67
5165 6067 2.358737 CCCACCTTGGTCTCGTGC 60.359 66.667 0.00 0.00 35.17 5.34
5172 6074 1.284657 CTTGGTCTCGTGCATAGCAG 58.715 55.000 0.00 0.00 40.08 4.24
5177 6079 2.939103 GGTCTCGTGCATAGCAGAAATT 59.061 45.455 0.00 0.00 40.08 1.82
5192 6094 5.758296 AGCAGAAATTAACTGACGACAAGAA 59.242 36.000 14.18 0.00 37.54 2.52
5212 6114 0.877071 AAAAGTCAGGCACATGCTCG 59.123 50.000 3.48 0.00 41.70 5.03
5213 6115 1.580845 AAAGTCAGGCACATGCTCGC 61.581 55.000 3.48 0.00 41.70 5.03
5219 6121 4.471726 GCACATGCTCGCCACAGC 62.472 66.667 0.00 0.00 40.13 4.40
5229 6131 3.414700 GCCACAGCGGAGTTCGTG 61.415 66.667 0.00 0.00 41.72 4.35
5230 6132 2.029073 CCACAGCGGAGTTCGTGT 59.971 61.111 0.00 0.00 41.72 4.49
5231 6133 2.022129 CCACAGCGGAGTTCGTGTC 61.022 63.158 0.00 0.00 41.72 3.67
5232 6134 2.022129 CACAGCGGAGTTCGTGTCC 61.022 63.158 0.00 0.00 41.72 4.02
5233 6135 2.338620 CAGCGGAGTTCGTGTCCA 59.661 61.111 0.00 0.00 41.72 4.02
5234 6136 1.300620 CAGCGGAGTTCGTGTCCAA 60.301 57.895 0.00 0.00 41.72 3.53
5235 6137 0.878523 CAGCGGAGTTCGTGTCCAAA 60.879 55.000 0.00 0.00 41.72 3.28
5236 6138 0.600255 AGCGGAGTTCGTGTCCAAAG 60.600 55.000 0.00 0.00 41.72 2.77
5237 6139 0.878961 GCGGAGTTCGTGTCCAAAGT 60.879 55.000 0.00 0.00 41.72 2.66
5238 6140 0.859232 CGGAGTTCGTGTCCAAAGTG 59.141 55.000 0.00 0.00 33.14 3.16
5239 6141 1.805120 CGGAGTTCGTGTCCAAAGTGT 60.805 52.381 0.00 0.00 33.14 3.55
5240 6142 1.865340 GGAGTTCGTGTCCAAAGTGTC 59.135 52.381 0.00 0.00 33.84 3.67
5241 6143 1.865340 GAGTTCGTGTCCAAAGTGTCC 59.135 52.381 0.00 0.00 0.00 4.02
5242 6144 1.208535 AGTTCGTGTCCAAAGTGTCCA 59.791 47.619 0.00 0.00 0.00 4.02
5243 6145 2.158813 AGTTCGTGTCCAAAGTGTCCAT 60.159 45.455 0.00 0.00 0.00 3.41
5244 6146 2.163818 TCGTGTCCAAAGTGTCCATC 57.836 50.000 0.00 0.00 0.00 3.51
5245 6147 1.156736 CGTGTCCAAAGTGTCCATCC 58.843 55.000 0.00 0.00 0.00 3.51
5246 6148 1.270839 CGTGTCCAAAGTGTCCATCCT 60.271 52.381 0.00 0.00 0.00 3.24
5247 6149 2.427506 GTGTCCAAAGTGTCCATCCTC 58.572 52.381 0.00 0.00 0.00 3.71
5248 6150 1.351017 TGTCCAAAGTGTCCATCCTCC 59.649 52.381 0.00 0.00 0.00 4.30
5249 6151 1.630878 GTCCAAAGTGTCCATCCTCCT 59.369 52.381 0.00 0.00 0.00 3.69
5250 6152 1.909302 TCCAAAGTGTCCATCCTCCTC 59.091 52.381 0.00 0.00 0.00 3.71
5251 6153 1.630369 CCAAAGTGTCCATCCTCCTCA 59.370 52.381 0.00 0.00 0.00 3.86
5252 6154 2.240667 CCAAAGTGTCCATCCTCCTCAT 59.759 50.000 0.00 0.00 0.00 2.90
5253 6155 3.539604 CAAAGTGTCCATCCTCCTCATC 58.460 50.000 0.00 0.00 0.00 2.92
5254 6156 1.799933 AGTGTCCATCCTCCTCATCC 58.200 55.000 0.00 0.00 0.00 3.51
5255 6157 1.008815 AGTGTCCATCCTCCTCATCCA 59.991 52.381 0.00 0.00 0.00 3.41
5256 6158 1.415659 GTGTCCATCCTCCTCATCCAG 59.584 57.143 0.00 0.00 0.00 3.86
5257 6159 0.396060 GTCCATCCTCCTCATCCAGC 59.604 60.000 0.00 0.00 0.00 4.85
5258 6160 0.030807 TCCATCCTCCTCATCCAGCA 60.031 55.000 0.00 0.00 0.00 4.41
5259 6161 0.397187 CCATCCTCCTCATCCAGCAG 59.603 60.000 0.00 0.00 0.00 4.24
5260 6162 0.250381 CATCCTCCTCATCCAGCAGC 60.250 60.000 0.00 0.00 0.00 5.25
5261 6163 0.693430 ATCCTCCTCATCCAGCAGCA 60.693 55.000 0.00 0.00 0.00 4.41
5262 6164 1.146485 CCTCCTCATCCAGCAGCAG 59.854 63.158 0.00 0.00 0.00 4.24
5263 6165 1.146485 CTCCTCATCCAGCAGCAGG 59.854 63.158 0.00 0.00 0.00 4.85
5264 6166 2.516460 CCTCATCCAGCAGCAGGC 60.516 66.667 0.00 0.00 45.30 4.85
5265 6167 2.516460 CTCATCCAGCAGCAGGCC 60.516 66.667 0.00 0.00 46.50 5.19
5266 6168 4.478371 TCATCCAGCAGCAGGCCG 62.478 66.667 0.00 0.00 46.50 6.13
5277 6179 4.796495 CAGGCCGGGCTTACCACC 62.796 72.222 30.73 4.83 40.22 4.61
5285 6187 4.752879 GCTTACCACCGGCAGCGA 62.753 66.667 0.00 0.00 0.00 4.93
5286 6188 2.047655 CTTACCACCGGCAGCGAA 60.048 61.111 0.00 0.00 0.00 4.70
5287 6189 2.047655 TTACCACCGGCAGCGAAG 60.048 61.111 0.00 0.00 0.00 3.79
5303 6205 3.615849 CGAAGCCTGAAGGAAATATGC 57.384 47.619 0.00 0.00 37.39 3.14
5304 6206 2.291741 CGAAGCCTGAAGGAAATATGCC 59.708 50.000 0.00 0.00 37.39 4.40
5305 6207 2.371658 AGCCTGAAGGAAATATGCCC 57.628 50.000 0.00 0.00 37.39 5.36
5306 6208 1.855599 AGCCTGAAGGAAATATGCCCT 59.144 47.619 0.00 0.00 37.39 5.19
5307 6209 3.056080 AGCCTGAAGGAAATATGCCCTA 58.944 45.455 0.00 0.00 37.39 3.53
5308 6210 3.073650 AGCCTGAAGGAAATATGCCCTAG 59.926 47.826 0.00 0.00 37.39 3.02
5309 6211 3.073062 GCCTGAAGGAAATATGCCCTAGA 59.927 47.826 0.00 0.00 37.39 2.43
5310 6212 4.805609 GCCTGAAGGAAATATGCCCTAGAG 60.806 50.000 0.00 0.00 37.39 2.43
5311 6213 4.263243 CCTGAAGGAAATATGCCCTAGAGG 60.263 50.000 0.00 0.00 37.39 3.69
5386 6288 7.490962 TTCATGCTAGAATTGTATTAACCGG 57.509 36.000 0.00 0.00 0.00 5.28
5387 6289 6.822442 TCATGCTAGAATTGTATTAACCGGA 58.178 36.000 9.46 0.00 0.00 5.14
5388 6290 7.276658 TCATGCTAGAATTGTATTAACCGGAA 58.723 34.615 9.46 0.00 0.00 4.30
5389 6291 7.771361 TCATGCTAGAATTGTATTAACCGGAAA 59.229 33.333 9.46 1.61 0.00 3.13
5390 6292 7.311364 TGCTAGAATTGTATTAACCGGAAAC 57.689 36.000 9.46 0.00 0.00 2.78
5391 6293 6.879993 TGCTAGAATTGTATTAACCGGAAACA 59.120 34.615 9.46 1.34 0.00 2.83
5392 6294 7.554835 TGCTAGAATTGTATTAACCGGAAACAT 59.445 33.333 9.46 0.00 0.00 2.71
5393 6295 9.048446 GCTAGAATTGTATTAACCGGAAACATA 57.952 33.333 9.46 0.00 0.00 2.29
5401 6303 9.616156 TGTATTAACCGGAAACATAATACATGT 57.384 29.630 22.31 2.69 42.13 3.21
5402 6304 9.872757 GTATTAACCGGAAACATAATACATGTG 57.127 33.333 9.46 0.00 39.40 3.21
5403 6305 7.925043 TTAACCGGAAACATAATACATGTGT 57.075 32.000 9.46 0.00 31.80 3.72
5404 6306 5.811399 ACCGGAAACATAATACATGTGTG 57.189 39.130 9.46 4.81 31.80 3.82
5405 6307 5.492895 ACCGGAAACATAATACATGTGTGA 58.507 37.500 9.46 0.00 31.80 3.58
5406 6308 5.941058 ACCGGAAACATAATACATGTGTGAA 59.059 36.000 9.46 0.00 31.80 3.18
5407 6309 6.601613 ACCGGAAACATAATACATGTGTGAAT 59.398 34.615 9.46 0.00 31.80 2.57
5408 6310 7.771361 ACCGGAAACATAATACATGTGTGAATA 59.229 33.333 9.46 0.00 31.80 1.75
5409 6311 8.067784 CCGGAAACATAATACATGTGTGAATAC 58.932 37.037 9.11 0.00 31.80 1.89
5410 6312 8.608317 CGGAAACATAATACATGTGTGAATACA 58.392 33.333 9.11 0.00 34.63 2.29
5420 6322 7.977789 ACATGTGTGAATACATAGACAAACA 57.022 32.000 0.00 0.00 39.17 2.83
5421 6323 8.032952 ACATGTGTGAATACATAGACAAACAG 57.967 34.615 0.00 0.00 39.17 3.16
5422 6324 7.877612 ACATGTGTGAATACATAGACAAACAGA 59.122 33.333 0.00 0.00 39.17 3.41
5423 6325 7.889589 TGTGTGAATACATAGACAAACAGAG 57.110 36.000 0.00 0.00 39.39 3.35
5424 6326 7.441836 TGTGTGAATACATAGACAAACAGAGT 58.558 34.615 0.00 0.00 39.39 3.24
5425 6327 7.384932 TGTGTGAATACATAGACAAACAGAGTG 59.615 37.037 0.00 0.00 39.39 3.51
5426 6328 7.385205 GTGTGAATACATAGACAAACAGAGTGT 59.615 37.037 0.00 0.00 39.39 3.55
5427 6329 7.598869 TGTGAATACATAGACAAACAGAGTGTC 59.401 37.037 0.00 0.00 44.75 3.67
5428 6330 7.598869 GTGAATACATAGACAAACAGAGTGTCA 59.401 37.037 7.26 0.00 46.44 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 3.071874 TCAAGCAGGATGTAGGGTTTG 57.928 47.619 0.00 0.00 39.31 2.93
23 24 7.722728 ACACACATCAATATAATCAAGCAGGAT 59.277 33.333 0.00 0.00 0.00 3.24
99 100 6.239176 GGAGAACCACCATCTTACTCATCTAG 60.239 46.154 0.00 0.00 35.97 2.43
102 103 4.443598 GGGAGAACCACCATCTTACTCATC 60.444 50.000 0.00 0.00 39.85 2.92
148 149 5.842874 AGGTACCCCTGGTGTCTATATAAAC 59.157 44.000 8.74 0.00 40.58 2.01
226 227 3.520290 TGGCGTATACTCCAAGTCTTG 57.480 47.619 12.21 5.53 0.00 3.02
290 374 0.684805 AGTGGTCGATGAGGGAGTCC 60.685 60.000 0.00 0.00 0.00 3.85
311 395 2.048503 CCGTTCCGACCAGGTGAC 60.049 66.667 0.00 0.00 41.99 3.67
344 428 2.595463 ATGGCGCGCATGGCTAAT 60.595 55.556 34.42 10.92 40.44 1.73
373 457 1.546961 CCTCTAGTCAGGTCCACGTT 58.453 55.000 0.00 0.00 0.00 3.99
526 610 7.148705 CGACATTATGAACCGTCTTCTAAAACA 60.149 37.037 0.00 0.00 0.00 2.83
616 704 3.803021 GCCAAGTTGTCCAATTGCATTCA 60.803 43.478 0.00 0.00 0.00 2.57
747 1248 4.507021 CACGGATGATGACAAGATCTTCTG 59.493 45.833 4.57 0.00 38.21 3.02
1034 1535 2.738314 GTTGGAAAATGCAACCAGATGC 59.262 45.455 3.66 0.00 41.94 3.91
1088 1589 2.738743 CTGCCCCATAATGAAACCACT 58.261 47.619 0.00 0.00 0.00 4.00
1120 1621 4.469657 AGCAAGGGATACACAACTGAAAA 58.530 39.130 0.00 0.00 39.74 2.29
1128 1629 6.543465 CAGAATCAATTAGCAAGGGATACACA 59.457 38.462 0.00 0.00 39.74 3.72
1132 1633 6.899089 TGTCAGAATCAATTAGCAAGGGATA 58.101 36.000 0.00 0.00 0.00 2.59
1134 1635 5.178096 TGTCAGAATCAATTAGCAAGGGA 57.822 39.130 0.00 0.00 0.00 4.20
1181 1683 4.337555 CCTATTGATCACTTCCTTTGGCAG 59.662 45.833 0.00 0.00 0.00 4.85
1196 1698 7.161404 GCAAAAAGTTTTCCTTCCCTATTGAT 58.839 34.615 0.32 0.00 31.27 2.57
1201 1703 3.644265 GGGCAAAAAGTTTTCCTTCCCTA 59.356 43.478 0.32 0.00 31.27 3.53
1243 1776 6.044682 GCCCATCATAAAAACTTGATTCCTG 58.955 40.000 0.00 0.00 30.24 3.86
1269 1802 3.900971 AGTACTAGGACCAACTCTAGCC 58.099 50.000 0.00 0.00 37.16 3.93
1270 1803 5.918426 AAAGTACTAGGACCAACTCTAGC 57.082 43.478 0.00 0.00 37.16 3.42
1271 1804 7.934855 TGTAAAGTACTAGGACCAACTCTAG 57.065 40.000 0.00 0.00 38.98 2.43
1273 1806 7.229581 CTTGTAAAGTACTAGGACCAACTCT 57.770 40.000 0.00 0.00 39.70 3.24
1310 1843 2.494059 ACACAACGCTAGCTTCACATT 58.506 42.857 13.93 0.00 0.00 2.71
1311 1844 2.169832 ACACAACGCTAGCTTCACAT 57.830 45.000 13.93 0.00 0.00 3.21
1312 1845 1.948104 AACACAACGCTAGCTTCACA 58.052 45.000 13.93 0.00 0.00 3.58
1322 1855 1.525983 CGTTTGCCAAAAACACAACGC 60.526 47.619 0.00 0.00 0.00 4.84
1328 1861 1.134670 CCTTCCCGTTTGCCAAAAACA 60.135 47.619 0.00 0.00 0.00 2.83
1331 1864 1.486211 TTCCTTCCCGTTTGCCAAAA 58.514 45.000 0.00 0.00 0.00 2.44
1332 1865 1.710816 ATTCCTTCCCGTTTGCCAAA 58.289 45.000 0.00 0.00 0.00 3.28
1333 1866 1.342819 CAATTCCTTCCCGTTTGCCAA 59.657 47.619 0.00 0.00 0.00 4.52
1334 1867 0.965439 CAATTCCTTCCCGTTTGCCA 59.035 50.000 0.00 0.00 0.00 4.92
1335 1868 0.966179 ACAATTCCTTCCCGTTTGCC 59.034 50.000 0.00 0.00 0.00 4.52
1336 1869 2.799978 CAAACAATTCCTTCCCGTTTGC 59.200 45.455 0.00 0.00 39.76 3.68
1337 1870 4.314740 TCAAACAATTCCTTCCCGTTTG 57.685 40.909 0.00 0.00 44.84 2.93
1338 1871 5.545063 ATTCAAACAATTCCTTCCCGTTT 57.455 34.783 0.00 0.00 0.00 3.60
1339 1872 5.545063 AATTCAAACAATTCCTTCCCGTT 57.455 34.783 0.00 0.00 0.00 4.44
1340 1873 5.296748 CAAATTCAAACAATTCCTTCCCGT 58.703 37.500 0.00 0.00 0.00 5.28
1341 1874 4.690280 CCAAATTCAAACAATTCCTTCCCG 59.310 41.667 0.00 0.00 0.00 5.14
1346 1879 5.163216 TGCCTTCCAAATTCAAACAATTCCT 60.163 36.000 0.00 0.00 0.00 3.36
1348 1881 5.179929 CCTGCCTTCCAAATTCAAACAATTC 59.820 40.000 0.00 0.00 0.00 2.17
1350 1883 4.347583 TCCTGCCTTCCAAATTCAAACAAT 59.652 37.500 0.00 0.00 0.00 2.71
1367 1900 3.197549 AGAGATTGAACTCTTCTCCTGCC 59.802 47.826 0.00 0.00 43.62 4.85
1368 1901 4.470334 AGAGATTGAACTCTTCTCCTGC 57.530 45.455 0.00 0.00 43.62 4.85
1380 1913 5.043732 AGGGAGAGTAGAGGAAGAGATTGAA 60.044 44.000 0.00 0.00 0.00 2.69
1428 2293 2.183046 GCTCGAGCAGGGTGAGAC 59.817 66.667 31.91 0.00 41.59 3.36
1487 2352 0.525668 GCGGTGAGGATGACACTACG 60.526 60.000 0.00 0.00 0.00 3.51
1490 2355 1.913262 TGGCGGTGAGGATGACACT 60.913 57.895 0.00 0.00 0.00 3.55
1492 2357 1.888436 GAGTGGCGGTGAGGATGACA 61.888 60.000 0.00 0.00 0.00 3.58
1493 2358 1.153549 GAGTGGCGGTGAGGATGAC 60.154 63.158 0.00 0.00 0.00 3.06
1494 2359 2.359169 GGAGTGGCGGTGAGGATGA 61.359 63.158 0.00 0.00 0.00 2.92
1495 2360 1.976132 ATGGAGTGGCGGTGAGGATG 61.976 60.000 0.00 0.00 0.00 3.51
1496 2361 1.274703 AATGGAGTGGCGGTGAGGAT 61.275 55.000 0.00 0.00 0.00 3.24
1497 2362 1.918293 AATGGAGTGGCGGTGAGGA 60.918 57.895 0.00 0.00 0.00 3.71
1498 2363 1.746615 CAATGGAGTGGCGGTGAGG 60.747 63.158 0.00 0.00 0.00 3.86
1499 2364 2.401766 GCAATGGAGTGGCGGTGAG 61.402 63.158 0.00 0.00 0.00 3.51
1500 2365 2.359850 GCAATGGAGTGGCGGTGA 60.360 61.111 0.00 0.00 0.00 4.02
1501 2366 1.597797 AATGCAATGGAGTGGCGGTG 61.598 55.000 0.00 0.00 0.00 4.94
1502 2367 0.899717 AAATGCAATGGAGTGGCGGT 60.900 50.000 0.00 0.00 0.00 5.68
1503 2368 0.458889 CAAATGCAATGGAGTGGCGG 60.459 55.000 0.00 0.00 0.00 6.13
1504 2369 1.079875 GCAAATGCAATGGAGTGGCG 61.080 55.000 0.00 0.00 41.59 5.69
1505 2370 2.758497 GCAAATGCAATGGAGTGGC 58.242 52.632 0.00 0.00 41.59 5.01
2294 3159 2.609459 GAGGATGTTGGTAGTGAATGCG 59.391 50.000 0.00 0.00 0.00 4.73
2303 3168 0.325296 AGGAGGCGAGGATGTTGGTA 60.325 55.000 0.00 0.00 0.00 3.25
2309 3174 1.066587 GACGAAGGAGGCGAGGATG 59.933 63.158 0.00 0.00 0.00 3.51
2699 3564 2.025863 GCTATGCAGCCCACCATCTTT 61.026 52.381 0.00 0.00 42.37 2.52
2849 3714 0.956633 ACAAGGTCAGCGTCGAGTAA 59.043 50.000 0.00 0.00 0.00 2.24
2864 3729 1.741706 GTGATGAGCACCATGGACAAG 59.258 52.381 21.47 6.32 41.78 3.16
2910 3775 0.465824 CCTGTCGGGTCGTAGAGGAT 60.466 60.000 0.00 0.00 36.95 3.24
3137 4002 0.874607 ACGTGGACGACTTCTTGTGC 60.875 55.000 6.12 0.00 43.02 4.57
3151 4016 2.125147 ATGATGCGGTGGACGTGG 60.125 61.111 0.00 0.00 46.52 4.94
3152 4017 2.516589 CGATGATGCGGTGGACGTG 61.517 63.158 0.00 0.00 46.52 4.49
3153 4018 2.202743 CGATGATGCGGTGGACGT 60.203 61.111 0.00 0.00 46.52 4.34
3155 4020 3.272334 GGCGATGATGCGGTGGAC 61.272 66.667 0.00 0.00 35.06 4.02
3156 4021 4.889856 CGGCGATGATGCGGTGGA 62.890 66.667 0.00 0.00 35.06 4.02
3164 4029 4.266070 CGGTCCGACGGCGATGAT 62.266 66.667 15.16 0.00 40.82 2.45
3470 4335 2.280524 TTCCTGTTGGACGCCGTG 60.281 61.111 0.00 0.00 43.06 4.94
3668 4533 1.992557 TCCCTGTACCTTTGCCAGAAT 59.007 47.619 0.00 0.00 0.00 2.40
3689 4554 0.959372 CGTACACCACCCTCTCGTCT 60.959 60.000 0.00 0.00 0.00 4.18
3740 4605 3.681835 GACCTCACCACCGACGCT 61.682 66.667 0.00 0.00 0.00 5.07
3869 4734 4.760047 ATGTCACCGAGCACGCCC 62.760 66.667 0.00 0.00 38.29 6.13
4010 4875 8.651391 TTCAACGAGAAAGAAACAATGTACTA 57.349 30.769 0.00 0.00 32.05 1.82
4011 4876 7.548196 TTCAACGAGAAAGAAACAATGTACT 57.452 32.000 0.00 0.00 32.05 2.73
4049 4914 8.860088 ACAAAATTACCTTGCTTTCACTAGAAT 58.140 29.630 0.00 0.00 32.89 2.40
4052 4917 8.134895 TGAACAAAATTACCTTGCTTTCACTAG 58.865 33.333 0.00 0.00 0.00 2.57
4236 5120 7.835822 TCCCACAAAATTGACTTACCATATTG 58.164 34.615 0.00 0.00 0.00 1.90
4237 5121 7.124147 CCTCCCACAAAATTGACTTACCATATT 59.876 37.037 0.00 0.00 0.00 1.28
4239 5123 5.949354 CCTCCCACAAAATTGACTTACCATA 59.051 40.000 0.00 0.00 0.00 2.74
4241 5125 4.141135 TCCTCCCACAAAATTGACTTACCA 60.141 41.667 0.00 0.00 0.00 3.25
4242 5126 4.403734 TCCTCCCACAAAATTGACTTACC 58.596 43.478 0.00 0.00 0.00 2.85
4266 5160 0.541296 TCCTCCTCCTCGAACCGTTT 60.541 55.000 0.00 0.00 0.00 3.60
4274 5168 2.430610 CCAGCCTTCCTCCTCCTCG 61.431 68.421 0.00 0.00 0.00 4.63
4277 5171 0.399806 ATCTCCAGCCTTCCTCCTCC 60.400 60.000 0.00 0.00 0.00 4.30
4278 5172 2.158385 TCTATCTCCAGCCTTCCTCCTC 60.158 54.545 0.00 0.00 0.00 3.71
4280 5174 2.390225 TCTATCTCCAGCCTTCCTCC 57.610 55.000 0.00 0.00 0.00 4.30
4283 5177 4.407296 TCTTTCTTCTATCTCCAGCCTTCC 59.593 45.833 0.00 0.00 0.00 3.46
4286 5180 6.380079 TTTTCTTTCTTCTATCTCCAGCCT 57.620 37.500 0.00 0.00 0.00 4.58
4289 5183 7.978975 AGTCGATTTTCTTTCTTCTATCTCCAG 59.021 37.037 0.00 0.00 0.00 3.86
4311 5205 9.840427 ACCATTAGATTAAAAATTGAACAGTCG 57.160 29.630 0.00 0.00 0.00 4.18
4368 5266 2.034179 CGGCTATATGTCAGTCGTCCAA 59.966 50.000 0.00 0.00 36.41 3.53
4370 5268 1.068472 CCGGCTATATGTCAGTCGTCC 60.068 57.143 0.00 0.00 39.44 4.79
4374 5272 1.272769 GGGACCGGCTATATGTCAGTC 59.727 57.143 0.00 0.00 0.00 3.51
4376 5274 1.338107 TGGGACCGGCTATATGTCAG 58.662 55.000 0.00 0.00 0.00 3.51
4378 5276 4.755266 AATATGGGACCGGCTATATGTC 57.245 45.455 0.00 0.00 0.00 3.06
4408 5310 1.028905 TCTTTTGCCGTGGGTCAAAG 58.971 50.000 5.06 3.99 33.18 2.77
4420 5322 8.816640 TTCATCTGACCTTTTATTTCTTTTGC 57.183 30.769 0.00 0.00 0.00 3.68
4431 5333 9.696917 GTGATATTTGTTTTCATCTGACCTTTT 57.303 29.630 0.00 0.00 0.00 2.27
4432 5334 9.082313 AGTGATATTTGTTTTCATCTGACCTTT 57.918 29.630 0.00 0.00 0.00 3.11
4433 5335 8.641498 AGTGATATTTGTTTTCATCTGACCTT 57.359 30.769 0.00 0.00 0.00 3.50
4435 5337 9.346725 GAAAGTGATATTTGTTTTCATCTGACC 57.653 33.333 0.00 0.00 0.00 4.02
4447 5349 9.362151 TCCCAAGTAAAAGAAAGTGATATTTGT 57.638 29.630 0.00 0.00 0.00 2.83
4452 5354 9.416284 AGTTTTCCCAAGTAAAAGAAAGTGATA 57.584 29.630 0.00 0.00 30.49 2.15
4453 5355 8.306313 AGTTTTCCCAAGTAAAAGAAAGTGAT 57.694 30.769 0.00 0.00 30.49 3.06
4454 5356 7.712204 AGTTTTCCCAAGTAAAAGAAAGTGA 57.288 32.000 0.00 0.00 30.49 3.41
4458 5360 9.643735 TGGTATAGTTTTCCCAAGTAAAAGAAA 57.356 29.630 0.00 0.00 0.00 2.52
4459 5361 9.643735 TTGGTATAGTTTTCCCAAGTAAAAGAA 57.356 29.630 0.00 0.00 33.25 2.52
4460 5362 9.070179 GTTGGTATAGTTTTCCCAAGTAAAAGA 57.930 33.333 0.00 0.00 37.63 2.52
4461 5363 8.852135 TGTTGGTATAGTTTTCCCAAGTAAAAG 58.148 33.333 0.00 0.00 37.63 2.27
4466 5368 6.370453 AGTTGTTGGTATAGTTTTCCCAAGT 58.630 36.000 0.00 0.00 37.63 3.16
4468 5370 7.663043 AAAGTTGTTGGTATAGTTTTCCCAA 57.337 32.000 0.00 0.00 34.69 4.12
4501 5403 9.784531 CTCCATATGATTGTTGGTATAGTCTTT 57.215 33.333 3.65 0.00 0.00 2.52
4502 5404 8.378565 CCTCCATATGATTGTTGGTATAGTCTT 58.621 37.037 3.65 0.00 0.00 3.01
4503 5405 7.514127 ACCTCCATATGATTGTTGGTATAGTCT 59.486 37.037 3.65 0.00 0.00 3.24
4504 5406 7.604164 CACCTCCATATGATTGTTGGTATAGTC 59.396 40.741 3.65 0.00 0.00 2.59
4505 5407 7.292356 TCACCTCCATATGATTGTTGGTATAGT 59.708 37.037 3.65 0.00 0.00 2.12
4506 5408 7.679783 TCACCTCCATATGATTGTTGGTATAG 58.320 38.462 3.65 0.00 0.00 1.31
4507 5409 7.625498 TCACCTCCATATGATTGTTGGTATA 57.375 36.000 3.65 0.00 0.00 1.47
4508 5410 6.514012 TCACCTCCATATGATTGTTGGTAT 57.486 37.500 3.65 0.00 0.00 2.73
4509 5411 5.966853 TCACCTCCATATGATTGTTGGTA 57.033 39.130 3.65 0.00 0.00 3.25
4510 5412 4.860802 TCACCTCCATATGATTGTTGGT 57.139 40.909 3.65 0.40 0.00 3.67
4511 5413 7.822161 TTAATCACCTCCATATGATTGTTGG 57.178 36.000 3.65 0.00 43.66 3.77
4512 5414 8.517878 GGATTAATCACCTCCATATGATTGTTG 58.482 37.037 17.07 0.00 43.66 3.33
4523 5425 2.698797 GACCGAGGATTAATCACCTCCA 59.301 50.000 17.07 0.00 46.87 3.86
4524 5426 2.966516 AGACCGAGGATTAATCACCTCC 59.033 50.000 17.07 0.76 46.87 4.30
4525 5427 4.674281 AAGACCGAGGATTAATCACCTC 57.326 45.455 17.07 14.01 46.31 3.85
4547 5449 5.642063 CCTAACGCATAGAGTCCAAAGAAAA 59.358 40.000 0.00 0.00 33.04 2.29
4551 5453 4.124851 ACCTAACGCATAGAGTCCAAAG 57.875 45.455 0.00 0.00 33.04 2.77
4553 5455 4.023450 CGATACCTAACGCATAGAGTCCAA 60.023 45.833 0.00 0.00 33.04 3.53
4554 5456 3.501062 CGATACCTAACGCATAGAGTCCA 59.499 47.826 0.00 0.00 33.04 4.02
4555 5457 3.119919 CCGATACCTAACGCATAGAGTCC 60.120 52.174 0.00 0.00 33.04 3.85
4556 5458 3.750130 TCCGATACCTAACGCATAGAGTC 59.250 47.826 0.00 0.00 33.04 3.36
4557 5459 3.748083 TCCGATACCTAACGCATAGAGT 58.252 45.455 0.00 0.00 33.04 3.24
4565 5467 6.091713 ACTGAAACATTTTCCGATACCTAACG 59.908 38.462 0.00 0.00 0.00 3.18
4573 5475 5.299279 ACTGACAACTGAAACATTTTCCGAT 59.701 36.000 0.00 0.00 0.00 4.18
4576 5478 5.890334 TGACTGACAACTGAAACATTTTCC 58.110 37.500 0.00 0.00 0.00 3.13
4582 5484 7.094420 TGAGAAAAATGACTGACAACTGAAACA 60.094 33.333 0.00 0.00 0.00 2.83
4600 5502 6.131972 AGATCTGATGGTTCCTGAGAAAAA 57.868 37.500 0.00 0.00 32.58 1.94
4606 5508 4.779489 TGAGAAAGATCTGATGGTTCCTGA 59.221 41.667 0.00 0.00 35.54 3.86
4615 5517 3.274288 GGCCGTTTGAGAAAGATCTGAT 58.726 45.455 0.00 0.00 35.54 2.90
4616 5518 2.615493 GGGCCGTTTGAGAAAGATCTGA 60.615 50.000 0.00 0.00 35.54 3.27
4624 5526 1.407258 CTGTTTTGGGCCGTTTGAGAA 59.593 47.619 0.00 0.00 0.00 2.87
4627 5529 1.611491 GATCTGTTTTGGGCCGTTTGA 59.389 47.619 0.00 0.00 0.00 2.69
4628 5530 1.339610 TGATCTGTTTTGGGCCGTTTG 59.660 47.619 0.00 0.00 0.00 2.93
4630 5532 1.923356 ATGATCTGTTTTGGGCCGTT 58.077 45.000 0.00 0.00 0.00 4.44
4631 5533 1.545582 CAATGATCTGTTTTGGGCCGT 59.454 47.619 0.00 0.00 0.00 5.68
4632 5534 1.545582 ACAATGATCTGTTTTGGGCCG 59.454 47.619 0.00 0.00 0.00 6.13
4633 5535 3.006752 TGAACAATGATCTGTTTTGGGCC 59.993 43.478 0.00 0.00 39.63 5.80
4634 5536 4.255833 TGAACAATGATCTGTTTTGGGC 57.744 40.909 2.22 0.00 39.63 5.36
4642 5544 7.255381 GGGAGGTTGAATATGAACAATGATCTG 60.255 40.741 0.00 0.00 0.00 2.90
4657 5559 5.515710 GGAAAAAGAGAGAGGGAGGTTGAAT 60.516 44.000 0.00 0.00 0.00 2.57
4660 5562 3.329225 AGGAAAAAGAGAGAGGGAGGTTG 59.671 47.826 0.00 0.00 0.00 3.77
4677 5579 3.589654 CTGGAGGCGCGTGAGGAAA 62.590 63.158 7.63 0.00 0.00 3.13
4685 5587 4.671569 GGATAGGCTGGAGGCGCG 62.672 72.222 0.00 0.00 46.23 6.86
4688 5590 4.321966 GCGGGATAGGCTGGAGGC 62.322 72.222 0.00 0.00 41.43 4.70
4697 5599 3.456105 GACGGTTGGGGCGGGATAG 62.456 68.421 0.00 0.00 0.00 2.08
5071 5973 0.395862 CTAGGTGGAGGCGAGGAAGA 60.396 60.000 0.00 0.00 0.00 2.87
5072 5974 1.395826 CCTAGGTGGAGGCGAGGAAG 61.396 65.000 0.00 0.00 38.35 3.46
5073 5975 1.381327 CCTAGGTGGAGGCGAGGAA 60.381 63.158 0.00 0.00 38.35 3.36
5074 5976 2.279073 CCTAGGTGGAGGCGAGGA 59.721 66.667 0.00 0.00 38.35 3.71
5075 5977 2.279073 TCCTAGGTGGAGGCGAGG 59.721 66.667 9.08 0.00 40.56 4.63
5083 5985 1.115930 AGCTGCGGTATCCTAGGTGG 61.116 60.000 9.08 0.00 37.10 4.61
5084 5986 0.315568 GAGCTGCGGTATCCTAGGTG 59.684 60.000 9.08 0.00 0.00 4.00
5085 5987 0.106167 TGAGCTGCGGTATCCTAGGT 60.106 55.000 9.08 0.00 0.00 3.08
5086 5988 1.040646 TTGAGCTGCGGTATCCTAGG 58.959 55.000 0.82 0.82 0.00 3.02
5087 5989 2.681706 CATTGAGCTGCGGTATCCTAG 58.318 52.381 0.00 0.00 0.00 3.02
5088 5990 1.270305 GCATTGAGCTGCGGTATCCTA 60.270 52.381 0.00 0.00 41.15 2.94
5089 5991 0.533755 GCATTGAGCTGCGGTATCCT 60.534 55.000 0.00 0.00 41.15 3.24
5090 5992 1.510480 GGCATTGAGCTGCGGTATCC 61.510 60.000 0.00 0.00 43.23 2.59
5091 5993 1.835483 CGGCATTGAGCTGCGGTATC 61.835 60.000 0.00 0.00 43.88 2.24
5092 5994 1.889105 CGGCATTGAGCTGCGGTAT 60.889 57.895 0.00 0.00 43.88 2.73
5093 5995 2.511373 CGGCATTGAGCTGCGGTA 60.511 61.111 0.00 0.00 43.88 4.02
5109 6011 3.918220 GATGAGCGTTGGCGAGCG 61.918 66.667 0.00 0.00 46.35 5.03
5110 6012 2.815211 TGATGAGCGTTGGCGAGC 60.815 61.111 0.00 0.00 46.35 5.03
5111 6013 1.446792 AGTGATGAGCGTTGGCGAG 60.447 57.895 0.00 0.00 46.35 5.03
5112 6014 1.737735 CAGTGATGAGCGTTGGCGA 60.738 57.895 0.00 0.00 46.35 5.54
5113 6015 2.780643 CAGTGATGAGCGTTGGCG 59.219 61.111 0.00 0.00 46.35 5.69
5114 6016 1.855213 TTGCAGTGATGAGCGTTGGC 61.855 55.000 0.00 0.00 40.37 4.52
5115 6017 0.110056 GTTGCAGTGATGAGCGTTGG 60.110 55.000 0.00 0.00 0.00 3.77
5116 6018 0.587768 TGTTGCAGTGATGAGCGTTG 59.412 50.000 0.00 0.00 0.00 4.10
5117 6019 0.588252 GTGTTGCAGTGATGAGCGTT 59.412 50.000 0.00 0.00 0.00 4.84
5150 6052 1.645034 CTATGCACGAGACCAAGGTG 58.355 55.000 0.00 0.00 34.85 4.00
5158 6060 5.291858 CAGTTAATTTCTGCTATGCACGAGA 59.708 40.000 1.59 0.00 33.79 4.04
5165 6067 6.647212 TGTCGTCAGTTAATTTCTGCTATG 57.353 37.500 5.73 0.00 33.48 2.23
5192 6094 1.267806 CGAGCATGTGCCTGACTTTTT 59.732 47.619 0.57 0.00 43.38 1.94
5196 6098 2.435586 GCGAGCATGTGCCTGACT 60.436 61.111 0.57 0.00 43.38 3.41
5212 6114 3.414700 CACGAACTCCGCTGTGGC 61.415 66.667 1.39 0.00 43.32 5.01
5213 6115 2.022129 GACACGAACTCCGCTGTGG 61.022 63.158 0.00 0.00 43.32 4.17
5214 6116 2.022129 GGACACGAACTCCGCTGTG 61.022 63.158 0.00 0.00 43.32 3.66
5215 6117 2.023414 TTGGACACGAACTCCGCTGT 62.023 55.000 0.00 0.00 43.32 4.40
5216 6118 0.878523 TTTGGACACGAACTCCGCTG 60.879 55.000 0.00 0.00 43.32 5.18
5217 6119 0.600255 CTTTGGACACGAACTCCGCT 60.600 55.000 0.00 0.00 43.32 5.52
5218 6120 0.878961 ACTTTGGACACGAACTCCGC 60.879 55.000 0.00 0.00 43.32 5.54
5219 6121 0.859232 CACTTTGGACACGAACTCCG 59.141 55.000 0.00 0.00 45.44 4.63
5220 6122 1.865340 GACACTTTGGACACGAACTCC 59.135 52.381 0.00 0.00 0.00 3.85
5221 6123 1.865340 GGACACTTTGGACACGAACTC 59.135 52.381 0.00 0.00 0.00 3.01
5222 6124 1.208535 TGGACACTTTGGACACGAACT 59.791 47.619 0.00 0.00 0.00 3.01
5223 6125 1.658994 TGGACACTTTGGACACGAAC 58.341 50.000 0.00 0.00 0.00 3.95
5224 6126 2.489971 GATGGACACTTTGGACACGAA 58.510 47.619 0.00 0.00 0.00 3.85
5225 6127 1.270625 GGATGGACACTTTGGACACGA 60.271 52.381 0.00 0.00 0.00 4.35
5226 6128 1.156736 GGATGGACACTTTGGACACG 58.843 55.000 0.00 0.00 0.00 4.49
5227 6129 2.427506 GAGGATGGACACTTTGGACAC 58.572 52.381 0.00 0.00 0.00 3.67
5228 6130 1.351017 GGAGGATGGACACTTTGGACA 59.649 52.381 0.00 0.00 0.00 4.02
5229 6131 1.630878 AGGAGGATGGACACTTTGGAC 59.369 52.381 0.00 0.00 0.00 4.02
5230 6132 1.909302 GAGGAGGATGGACACTTTGGA 59.091 52.381 0.00 0.00 0.00 3.53
5231 6133 1.630369 TGAGGAGGATGGACACTTTGG 59.370 52.381 0.00 0.00 0.00 3.28
5232 6134 3.539604 GATGAGGAGGATGGACACTTTG 58.460 50.000 0.00 0.00 0.00 2.77
5233 6135 2.507471 GGATGAGGAGGATGGACACTTT 59.493 50.000 0.00 0.00 0.00 2.66
5234 6136 2.122768 GGATGAGGAGGATGGACACTT 58.877 52.381 0.00 0.00 0.00 3.16
5235 6137 1.008815 TGGATGAGGAGGATGGACACT 59.991 52.381 0.00 0.00 0.00 3.55
5236 6138 1.415659 CTGGATGAGGAGGATGGACAC 59.584 57.143 0.00 0.00 0.00 3.67
5237 6139 1.798626 CTGGATGAGGAGGATGGACA 58.201 55.000 0.00 0.00 0.00 4.02
5238 6140 0.396060 GCTGGATGAGGAGGATGGAC 59.604 60.000 0.00 0.00 0.00 4.02
5239 6141 0.030807 TGCTGGATGAGGAGGATGGA 60.031 55.000 0.00 0.00 0.00 3.41
5240 6142 0.397187 CTGCTGGATGAGGAGGATGG 59.603 60.000 0.00 0.00 36.50 3.51
5241 6143 0.250381 GCTGCTGGATGAGGAGGATG 60.250 60.000 0.00 0.00 40.48 3.51
5242 6144 0.693430 TGCTGCTGGATGAGGAGGAT 60.693 55.000 0.00 0.00 40.48 3.24
5243 6145 1.306397 TGCTGCTGGATGAGGAGGA 60.306 57.895 0.00 0.00 40.48 3.71
5244 6146 1.146485 CTGCTGCTGGATGAGGAGG 59.854 63.158 0.00 0.00 40.48 4.30
5245 6147 1.146485 CCTGCTGCTGGATGAGGAG 59.854 63.158 19.63 0.00 43.00 3.69
5246 6148 3.040206 GCCTGCTGCTGGATGAGGA 62.040 63.158 27.16 0.00 36.87 3.71
5247 6149 2.516460 GCCTGCTGCTGGATGAGG 60.516 66.667 27.16 12.88 36.87 3.86
5248 6150 2.516460 GGCCTGCTGCTGGATGAG 60.516 66.667 27.16 2.56 40.92 2.90
5249 6151 4.478371 CGGCCTGCTGCTGGATGA 62.478 66.667 27.16 0.00 43.04 2.92
5260 6162 4.796495 GGTGGTAAGCCCGGCCTG 62.796 72.222 5.55 0.00 35.15 4.85
5268 6170 4.752879 TCGCTGCCGGTGGTAAGC 62.753 66.667 1.90 4.25 33.35 3.09
5269 6171 2.047655 TTCGCTGCCGGTGGTAAG 60.048 61.111 1.90 0.00 34.56 2.34
5270 6172 2.047655 CTTCGCTGCCGGTGGTAA 60.048 61.111 1.90 0.00 34.56 2.85
5271 6173 4.752879 GCTTCGCTGCCGGTGGTA 62.753 66.667 1.90 0.00 34.56 3.25
5279 6181 1.237285 TTTCCTTCAGGCTTCGCTGC 61.237 55.000 0.00 0.00 34.44 5.25
5280 6182 1.457346 ATTTCCTTCAGGCTTCGCTG 58.543 50.000 0.00 0.00 34.44 5.18
5281 6183 3.209410 CATATTTCCTTCAGGCTTCGCT 58.791 45.455 0.00 0.00 34.44 4.93
5282 6184 2.287248 GCATATTTCCTTCAGGCTTCGC 60.287 50.000 0.00 0.00 34.44 4.70
5283 6185 2.291741 GGCATATTTCCTTCAGGCTTCG 59.708 50.000 0.00 0.00 34.44 3.79
5284 6186 2.625314 GGGCATATTTCCTTCAGGCTTC 59.375 50.000 0.00 0.00 34.44 3.86
5285 6187 2.245806 AGGGCATATTTCCTTCAGGCTT 59.754 45.455 0.00 0.00 34.44 4.35
5286 6188 1.855599 AGGGCATATTTCCTTCAGGCT 59.144 47.619 0.00 0.00 34.44 4.58
5287 6189 2.371658 AGGGCATATTTCCTTCAGGC 57.628 50.000 0.00 0.00 34.44 4.85
5288 6190 4.263243 CCTCTAGGGCATATTTCCTTCAGG 60.263 50.000 0.00 2.64 34.75 3.86
5289 6191 4.904241 CCTCTAGGGCATATTTCCTTCAG 58.096 47.826 0.00 0.00 34.75 3.02
5290 6192 4.982241 CCTCTAGGGCATATTTCCTTCA 57.018 45.455 0.00 0.00 34.75 3.02
5302 6204 8.637196 AATAACTTTATTATTGCCTCTAGGGC 57.363 34.615 13.60 13.60 44.71 5.19
5360 6262 9.214957 CCGGTTAATACAATTCTAGCATGAATA 57.785 33.333 0.00 0.00 35.82 1.75
5361 6263 7.936847 TCCGGTTAATACAATTCTAGCATGAAT 59.063 33.333 0.00 0.00 38.19 2.57
5362 6264 7.276658 TCCGGTTAATACAATTCTAGCATGAA 58.723 34.615 0.00 0.00 0.00 2.57
5363 6265 6.822442 TCCGGTTAATACAATTCTAGCATGA 58.178 36.000 0.00 0.00 0.00 3.07
5364 6266 7.490962 TTCCGGTTAATACAATTCTAGCATG 57.509 36.000 0.00 0.00 0.00 4.06
5365 6267 7.554835 TGTTTCCGGTTAATACAATTCTAGCAT 59.445 33.333 0.00 0.00 0.00 3.79
5366 6268 6.879993 TGTTTCCGGTTAATACAATTCTAGCA 59.120 34.615 0.00 0.00 0.00 3.49
5367 6269 7.311364 TGTTTCCGGTTAATACAATTCTAGC 57.689 36.000 0.00 0.00 0.00 3.42
5375 6277 9.616156 ACATGTATTATGTTTCCGGTTAATACA 57.384 29.630 22.83 22.83 44.85 2.29
5376 6278 9.872757 CACATGTATTATGTTTCCGGTTAATAC 57.127 33.333 0.00 12.47 37.73 1.89
5377 6279 9.616156 ACACATGTATTATGTTTCCGGTTAATA 57.384 29.630 0.00 0.00 0.00 0.98
5378 6280 8.402472 CACACATGTATTATGTTTCCGGTTAAT 58.598 33.333 0.00 1.95 0.00 1.40
5379 6281 7.606839 TCACACATGTATTATGTTTCCGGTTAA 59.393 33.333 0.00 0.00 0.00 2.01
5380 6282 7.104290 TCACACATGTATTATGTTTCCGGTTA 58.896 34.615 0.00 0.00 0.00 2.85
5381 6283 5.941058 TCACACATGTATTATGTTTCCGGTT 59.059 36.000 0.00 0.00 0.00 4.44
5382 6284 5.492895 TCACACATGTATTATGTTTCCGGT 58.507 37.500 0.00 0.00 0.00 5.28
5383 6285 6.429791 TTCACACATGTATTATGTTTCCGG 57.570 37.500 0.00 0.00 0.00 5.14
5384 6286 8.608317 TGTATTCACACATGTATTATGTTTCCG 58.392 33.333 0.00 0.00 0.00 4.30
5394 6296 9.665719 TGTTTGTCTATGTATTCACACATGTAT 57.334 29.630 0.00 0.00 39.46 2.29
5395 6297 9.150348 CTGTTTGTCTATGTATTCACACATGTA 57.850 33.333 0.00 0.00 39.46 2.29
5396 6298 7.877612 TCTGTTTGTCTATGTATTCACACATGT 59.122 33.333 0.00 0.00 39.46 3.21
5397 6299 8.255394 TCTGTTTGTCTATGTATTCACACATG 57.745 34.615 0.00 0.00 39.46 3.21
5398 6300 8.097038 ACTCTGTTTGTCTATGTATTCACACAT 58.903 33.333 0.00 0.00 41.88 3.21
5399 6301 7.384932 CACTCTGTTTGTCTATGTATTCACACA 59.615 37.037 0.00 0.00 37.54 3.72
5400 6302 7.385205 ACACTCTGTTTGTCTATGTATTCACAC 59.615 37.037 0.00 0.00 37.54 3.82
5401 6303 7.441836 ACACTCTGTTTGTCTATGTATTCACA 58.558 34.615 0.00 0.00 39.52 3.58
5402 6304 7.598869 TGACACTCTGTTTGTCTATGTATTCAC 59.401 37.037 11.01 0.00 43.30 3.18
5403 6305 7.666623 TGACACTCTGTTTGTCTATGTATTCA 58.333 34.615 11.01 0.00 43.30 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.