Multiple sequence alignment - TraesCS5A01G150300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G150300 chr5A 100.000 4147 0 0 1 4147 328010626 328006480 0.000000e+00 7659
1 TraesCS5A01G150300 chr5A 99.428 874 5 0 1 874 328016867 328015994 0.000000e+00 1587
2 TraesCS5A01G150300 chr5B 97.573 2184 53 0 943 3126 276960857 276958674 0.000000e+00 3740
3 TraesCS5A01G150300 chr5B 86.622 897 62 24 3126 4002 276958639 276957781 0.000000e+00 939
4 TraesCS5A01G150300 chr5D 97.437 2185 56 0 942 3126 243834759 243832575 0.000000e+00 3725
5 TraesCS5A01G150300 chr5D 85.434 714 50 26 3126 3825 243832540 243831867 0.000000e+00 693
6 TraesCS5A01G150300 chr1A 95.430 941 29 6 1 929 59587320 59586382 0.000000e+00 1487
7 TraesCS5A01G150300 chr7B 84.219 659 63 24 1 644 629787401 629786769 1.650000e-168 603
8 TraesCS5A01G150300 chr7A 87.312 465 38 14 1 450 661577317 661577775 2.860000e-141 512
9 TraesCS5A01G150300 chr7D 84.296 554 49 14 1 525 572539335 572539879 1.330000e-139 507
10 TraesCS5A01G150300 chr7D 92.920 113 8 0 23 135 138312673 138312561 9.220000e-37 165
11 TraesCS5A01G150300 chr7D 91.597 119 10 0 526 644 572539918 572540036 9.220000e-37 165
12 TraesCS5A01G150300 chr4A 87.156 218 28 0 676 893 434740901 434740684 8.900000e-62 248
13 TraesCS5A01G150300 chr3A 93.377 151 10 0 3997 4147 119265243 119265393 1.500000e-54 224


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G150300 chr5A 328006480 328010626 4146 True 7659.0 7659 100.0000 1 4147 1 chr5A.!!$R1 4146
1 TraesCS5A01G150300 chr5A 328015994 328016867 873 True 1587.0 1587 99.4280 1 874 1 chr5A.!!$R2 873
2 TraesCS5A01G150300 chr5B 276957781 276960857 3076 True 2339.5 3740 92.0975 943 4002 2 chr5B.!!$R1 3059
3 TraesCS5A01G150300 chr5D 243831867 243834759 2892 True 2209.0 3725 91.4355 942 3825 2 chr5D.!!$R1 2883
4 TraesCS5A01G150300 chr1A 59586382 59587320 938 True 1487.0 1487 95.4300 1 929 1 chr1A.!!$R1 928
5 TraesCS5A01G150300 chr7B 629786769 629787401 632 True 603.0 603 84.2190 1 644 1 chr7B.!!$R1 643
6 TraesCS5A01G150300 chr7D 572539335 572540036 701 False 336.0 507 87.9465 1 644 2 chr7D.!!$F1 643

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
340 361 1.818060 TGGATGCATAGCGCTTTGTTT 59.182 42.857 25.42 15.04 43.06 2.83 F
1364 1436 0.036952 CCTGGAACGCAGTGATCACT 60.037 55.000 22.89 22.89 45.00 3.41 F
1559 1631 1.493950 CCTCGCCGTGCAATGATCTC 61.494 60.000 0.00 0.00 0.00 2.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2105 2177 0.250234 CTCGACAAGCATCCTCCCAA 59.750 55.000 0.00 0.00 0.00 4.12 R
2999 3071 0.033208 CCCAATCCCCTTTAGCAGCA 60.033 55.000 0.00 0.00 0.00 4.41 R
3330 3445 1.077169 AGAACCTGGTTCCCCCAATTC 59.923 52.381 30.69 8.44 44.65 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
340 361 1.818060 TGGATGCATAGCGCTTTGTTT 59.182 42.857 25.42 15.04 43.06 2.83
607 679 2.735823 CATTGCTCTGTCGATCGATCA 58.264 47.619 22.50 18.53 0.00 2.92
725 797 3.078837 GCGGGTAGATTCAAACCAAAGA 58.921 45.455 9.61 0.00 37.51 2.52
885 957 6.303054 TCTAGAACCAAACCATCACATTCAA 58.697 36.000 0.00 0.00 0.00 2.69
915 987 3.262405 TGTAGGACTTCCGGTGCTTTTAT 59.738 43.478 0.00 0.00 44.21 1.40
916 988 4.467082 TGTAGGACTTCCGGTGCTTTTATA 59.533 41.667 0.00 0.00 44.21 0.98
917 989 4.563140 AGGACTTCCGGTGCTTTTATAA 57.437 40.909 0.00 0.00 44.21 0.98
918 990 4.259356 AGGACTTCCGGTGCTTTTATAAC 58.741 43.478 0.00 0.00 44.21 1.89
919 991 4.019591 AGGACTTCCGGTGCTTTTATAACT 60.020 41.667 0.00 0.00 44.21 2.24
920 992 4.331992 GGACTTCCGGTGCTTTTATAACTC 59.668 45.833 0.00 0.00 33.31 3.01
921 993 5.161943 ACTTCCGGTGCTTTTATAACTCT 57.838 39.130 0.00 0.00 0.00 3.24
922 994 5.557866 ACTTCCGGTGCTTTTATAACTCTT 58.442 37.500 0.00 0.00 0.00 2.85
923 995 5.642491 ACTTCCGGTGCTTTTATAACTCTTC 59.358 40.000 0.00 0.00 0.00 2.87
924 996 5.416271 TCCGGTGCTTTTATAACTCTTCT 57.584 39.130 0.00 0.00 0.00 2.85
925 997 5.801380 TCCGGTGCTTTTATAACTCTTCTT 58.199 37.500 0.00 0.00 0.00 2.52
926 998 6.938507 TCCGGTGCTTTTATAACTCTTCTTA 58.061 36.000 0.00 0.00 0.00 2.10
927 999 7.562135 TCCGGTGCTTTTATAACTCTTCTTAT 58.438 34.615 0.00 0.00 0.00 1.73
928 1000 8.698210 TCCGGTGCTTTTATAACTCTTCTTATA 58.302 33.333 0.00 0.00 0.00 0.98
929 1001 9.321562 CCGGTGCTTTTATAACTCTTCTTATAA 57.678 33.333 0.00 0.00 30.13 0.98
958 1030 3.743911 TGTAAGATTTGTACAGCACACCG 59.256 43.478 0.00 0.00 36.69 4.94
991 1063 3.547468 CAGTCCAAAAACTTCGCACTTTG 59.453 43.478 0.00 0.00 0.00 2.77
1026 1098 4.033776 CCCATGCCCCACGTCAGT 62.034 66.667 0.00 0.00 0.00 3.41
1237 1309 2.097728 GTTCGACGAAATGCCCGC 59.902 61.111 12.67 0.00 0.00 6.13
1364 1436 0.036952 CCTGGAACGCAGTGATCACT 60.037 55.000 22.89 22.89 45.00 3.41
1559 1631 1.493950 CCTCGCCGTGCAATGATCTC 61.494 60.000 0.00 0.00 0.00 2.75
1682 1754 1.874231 TCGGTTTTGAGTTGCGCATTA 59.126 42.857 12.75 0.00 0.00 1.90
1803 1875 1.645034 CTATGCTTCACGTGGACAGG 58.355 55.000 17.00 0.00 0.00 4.00
2072 2144 4.334759 GTCAATGACATGATAGCAGCAAGT 59.665 41.667 8.74 0.00 32.09 3.16
2105 2177 4.401925 ACTTCTACTCAAAATGCAGCCTT 58.598 39.130 0.00 0.00 0.00 4.35
2177 2249 4.157289 GTGGTGCTCAATTCAATGATCACT 59.843 41.667 0.00 0.00 42.91 3.41
2219 2291 4.364860 GGATAGAAGAGGCGAAAAGAGTC 58.635 47.826 0.00 0.00 0.00 3.36
2465 2537 2.613977 GCAGTCTGACCATGTTGTAGCT 60.614 50.000 3.32 0.00 0.00 3.32
2543 2615 4.487714 TTTCGATGGAATAGACAAGCCT 57.512 40.909 0.00 0.00 30.88 4.58
2864 2936 4.272748 CCCTTTAAAGCCGATACAGTAAGC 59.727 45.833 9.86 0.00 0.00 3.09
2981 3053 4.041567 TCACCACATTCCAGTCTGTATGTT 59.958 41.667 12.68 1.38 0.00 2.71
2993 3065 2.899900 TCTGTATGTTCAGCTGTCCAGT 59.100 45.455 14.67 0.28 35.63 4.00
2999 3071 0.181114 TTCAGCTGTCCAGTGTGCTT 59.819 50.000 14.67 0.00 33.03 3.91
3133 3240 2.034878 TCAGCTGTTGTGTCTCAGAGT 58.965 47.619 14.67 0.00 34.02 3.24
3142 3249 5.810587 TGTTGTGTCTCAGAGTAGTTGTTTC 59.189 40.000 0.00 0.00 0.00 2.78
3143 3250 5.854010 TGTGTCTCAGAGTAGTTGTTTCT 57.146 39.130 0.00 0.00 0.00 2.52
3149 3256 3.964688 TCAGAGTAGTTGTTTCTCCACCA 59.035 43.478 0.00 0.00 0.00 4.17
3209 3316 3.540314 TGCTGCTGGAAAAACACAAAT 57.460 38.095 0.00 0.00 0.00 2.32
3210 3317 3.196463 TGCTGCTGGAAAAACACAAATG 58.804 40.909 0.00 0.00 0.00 2.32
3214 3321 5.336150 TGCTGGAAAAACACAAATGAAGA 57.664 34.783 0.00 0.00 0.00 2.87
3215 3322 5.108517 TGCTGGAAAAACACAAATGAAGAC 58.891 37.500 0.00 0.00 0.00 3.01
3220 3329 6.099341 GGAAAAACACAAATGAAGACACACT 58.901 36.000 0.00 0.00 0.00 3.55
3232 3341 7.807977 ATGAAGACACACTTAGAAATGTTGT 57.192 32.000 0.00 0.00 39.13 3.32
3234 3343 6.821160 TGAAGACACACTTAGAAATGTTGTCA 59.179 34.615 0.00 0.00 39.13 3.58
3266 3381 7.823745 ACAAACTGATTCTTTTACTGACCAT 57.176 32.000 0.00 0.00 0.00 3.55
3284 3399 5.251932 TGACCATAAATAAACTCCAGTGGGA 59.748 40.000 9.92 0.00 42.29 4.37
3295 3410 1.704628 TCCAGTGGGAAAGATCTTGCA 59.295 47.619 15.58 0.00 41.32 4.08
3296 3411 2.089980 CCAGTGGGAAAGATCTTGCAG 58.910 52.381 15.58 0.00 35.59 4.41
3298 3413 2.486982 CAGTGGGAAAGATCTTGCAGTG 59.513 50.000 15.58 5.14 0.00 3.66
3299 3414 1.815003 GTGGGAAAGATCTTGCAGTGG 59.185 52.381 15.58 0.00 0.00 4.00
3307 3422 1.615392 GATCTTGCAGTGGGTTTGCTT 59.385 47.619 0.00 0.00 42.02 3.91
3313 3428 2.036992 TGCAGTGGGTTTGCTTTATTGG 59.963 45.455 0.00 0.00 42.02 3.16
3317 3432 5.568624 GCAGTGGGTTTGCTTTATTGGTTAT 60.569 40.000 0.00 0.00 38.51 1.89
3323 3438 6.405842 GGGTTTGCTTTATTGGTTATCCAGAG 60.406 42.308 0.00 0.00 45.22 3.35
3330 3445 3.634397 TTGGTTATCCAGAGCCTGAAG 57.366 47.619 4.00 0.00 45.22 3.02
3337 3452 1.283029 TCCAGAGCCTGAAGAATTGGG 59.717 52.381 4.00 0.00 32.44 4.12
3362 3477 3.252974 CCAGGTTCTGGTTAGCAGTAG 57.747 52.381 11.32 0.00 45.82 2.57
3381 3496 6.115446 CAGTAGGAAATCTGCAGGTAATTCA 58.885 40.000 15.13 0.00 0.00 2.57
3390 3505 9.860898 AAATCTGCAGGTAATTCATTTCTAAAC 57.139 29.630 15.13 0.00 0.00 2.01
3391 3506 7.072177 TCTGCAGGTAATTCATTTCTAAACG 57.928 36.000 15.13 0.00 0.00 3.60
3428 3547 2.034939 TGCCATTTTTCTGCTGTCAGTG 59.965 45.455 0.93 0.00 41.10 3.66
3435 3554 1.620822 TCTGCTGTCAGTGCTACAGA 58.379 50.000 14.47 8.13 45.89 3.41
3488 3607 5.699097 GTTGGAACCACTATTTTGTAGCA 57.301 39.130 0.00 0.00 0.00 3.49
3499 3618 6.697019 CACTATTTTGTAGCAAAACAAGCAGT 59.303 34.615 8.89 5.74 40.29 4.40
3521 3640 7.679638 GCAGTCAATTTAACTATCCGAATGCTT 60.680 37.037 0.00 0.00 39.23 3.91
3523 3642 8.398665 AGTCAATTTAACTATCCGAATGCTTTC 58.601 33.333 2.28 2.28 0.00 2.62
3613 3732 3.948735 TTTTTCTAGTGGGGGAGCG 57.051 52.632 0.00 0.00 0.00 5.03
3659 3778 9.745018 TGAGTTTTCATTTCCAATCTAAGATCT 57.255 29.630 0.00 0.00 0.00 2.75
3757 3876 5.065218 TGAAGAAAGAAAGTGCAGTCTGAAC 59.935 40.000 3.32 2.77 0.00 3.18
3774 3893 1.347378 GAACCCACCCACGGTTAGTTA 59.653 52.381 0.00 0.00 43.75 2.24
3780 3899 4.395854 CCCACCCACGGTTAGTTATTTTAC 59.604 45.833 0.00 0.00 31.02 2.01
3781 3900 4.395854 CCACCCACGGTTAGTTATTTTACC 59.604 45.833 0.00 0.00 31.02 2.85
3808 3930 0.689055 AAACTGAACGGAGTACCCCC 59.311 55.000 0.00 0.00 45.00 5.40
3844 3973 3.372440 AGAAAAGTATCCTGGGGCAAG 57.628 47.619 0.00 0.00 0.00 4.01
3863 3992 4.208873 GCAAGCTCTCTATTGAGATGAACG 59.791 45.833 7.34 0.00 46.93 3.95
3870 3999 7.260558 TCTCTATTGAGATGAACGTACGAAT 57.739 36.000 24.41 12.21 43.73 3.34
3939 4068 5.233957 TGCATTTGAATATTGAGACACGG 57.766 39.130 0.00 0.00 0.00 4.94
3950 4079 1.684450 TGAGACACGGCTAACTTCACA 59.316 47.619 0.00 0.00 0.00 3.58
3952 4081 1.411246 AGACACGGCTAACTTCACACA 59.589 47.619 0.00 0.00 0.00 3.72
3960 4089 4.333649 CGGCTAACTTCACACATCATGATT 59.666 41.667 5.16 0.00 0.00 2.57
3977 4106 6.840527 TCATGATTCAAATATGGTGCTCCTA 58.159 36.000 6.34 0.00 34.23 2.94
3985 4114 6.992123 TCAAATATGGTGCTCCTACTTACATG 59.008 38.462 6.34 0.00 34.23 3.21
4020 4149 5.779241 TTTTAGGGAAGACCATCATGACT 57.221 39.130 0.00 0.00 43.89 3.41
4021 4150 6.884472 TTTTAGGGAAGACCATCATGACTA 57.116 37.500 0.00 0.00 43.89 2.59
4022 4151 6.485830 TTTAGGGAAGACCATCATGACTAG 57.514 41.667 0.00 0.00 43.89 2.57
4023 4152 4.000928 AGGGAAGACCATCATGACTAGT 57.999 45.455 0.00 0.00 43.89 2.57
4024 4153 4.366267 AGGGAAGACCATCATGACTAGTT 58.634 43.478 0.00 0.00 43.89 2.24
4025 4154 4.785376 AGGGAAGACCATCATGACTAGTTT 59.215 41.667 0.00 0.00 43.89 2.66
4026 4155 5.251700 AGGGAAGACCATCATGACTAGTTTT 59.748 40.000 0.00 0.00 43.89 2.43
4027 4156 6.443849 AGGGAAGACCATCATGACTAGTTTTA 59.556 38.462 0.00 0.00 43.89 1.52
4028 4157 7.127955 AGGGAAGACCATCATGACTAGTTTTAT 59.872 37.037 0.00 0.00 43.89 1.40
4029 4158 7.775561 GGGAAGACCATCATGACTAGTTTTATT 59.224 37.037 0.00 0.00 39.85 1.40
4030 4159 8.616076 GGAAGACCATCATGACTAGTTTTATTG 58.384 37.037 0.00 0.00 35.97 1.90
4031 4160 8.511604 AAGACCATCATGACTAGTTTTATTGG 57.488 34.615 0.00 5.28 0.00 3.16
4032 4161 7.861629 AGACCATCATGACTAGTTTTATTGGA 58.138 34.615 17.10 2.73 0.00 3.53
4033 4162 8.328758 AGACCATCATGACTAGTTTTATTGGAA 58.671 33.333 17.10 0.00 0.00 3.53
4034 4163 8.281212 ACCATCATGACTAGTTTTATTGGAAC 57.719 34.615 17.10 0.00 0.00 3.62
4035 4164 8.109634 ACCATCATGACTAGTTTTATTGGAACT 58.890 33.333 17.10 0.00 40.28 3.01
4036 4165 8.960591 CCATCATGACTAGTTTTATTGGAACTT 58.039 33.333 0.00 0.00 38.28 2.66
4040 4169 9.774742 CATGACTAGTTTTATTGGAACTTAAGC 57.225 33.333 1.29 0.00 38.28 3.09
4041 4170 8.911918 TGACTAGTTTTATTGGAACTTAAGCA 57.088 30.769 1.29 0.00 38.28 3.91
4042 4171 8.999431 TGACTAGTTTTATTGGAACTTAAGCAG 58.001 33.333 1.29 0.00 38.28 4.24
4043 4172 9.216117 GACTAGTTTTATTGGAACTTAAGCAGA 57.784 33.333 1.29 0.00 38.28 4.26
4044 4173 9.569122 ACTAGTTTTATTGGAACTTAAGCAGAA 57.431 29.630 1.29 0.00 38.28 3.02
4053 4182 7.994425 TGGAACTTAAGCAGAAATTACATCA 57.006 32.000 1.29 0.00 0.00 3.07
4054 4183 8.579850 TGGAACTTAAGCAGAAATTACATCAT 57.420 30.769 1.29 0.00 0.00 2.45
4055 4184 8.677300 TGGAACTTAAGCAGAAATTACATCATC 58.323 33.333 1.29 0.00 0.00 2.92
4056 4185 8.131731 GGAACTTAAGCAGAAATTACATCATCC 58.868 37.037 1.29 0.00 0.00 3.51
4057 4186 8.579850 AACTTAAGCAGAAATTACATCATCCA 57.420 30.769 1.29 0.00 0.00 3.41
4058 4187 7.989826 ACTTAAGCAGAAATTACATCATCCAC 58.010 34.615 1.29 0.00 0.00 4.02
4059 4188 7.611467 ACTTAAGCAGAAATTACATCATCCACA 59.389 33.333 1.29 0.00 0.00 4.17
4060 4189 6.839124 AAGCAGAAATTACATCATCCACAA 57.161 33.333 0.00 0.00 0.00 3.33
4061 4190 6.446781 AGCAGAAATTACATCATCCACAAG 57.553 37.500 0.00 0.00 0.00 3.16
4062 4191 6.182627 AGCAGAAATTACATCATCCACAAGA 58.817 36.000 0.00 0.00 0.00 3.02
4063 4192 6.094603 AGCAGAAATTACATCATCCACAAGAC 59.905 38.462 0.00 0.00 0.00 3.01
4064 4193 6.094603 GCAGAAATTACATCATCCACAAGACT 59.905 38.462 0.00 0.00 0.00 3.24
4065 4194 7.470079 CAGAAATTACATCATCCACAAGACTG 58.530 38.462 0.00 0.00 0.00 3.51
4066 4195 6.600822 AGAAATTACATCATCCACAAGACTGG 59.399 38.462 0.00 0.00 0.00 4.00
4067 4196 5.698741 ATTACATCATCCACAAGACTGGA 57.301 39.130 0.00 0.00 44.72 3.86
4068 4197 5.497464 TTACATCATCCACAAGACTGGAA 57.503 39.130 0.00 0.00 43.79 3.53
4069 4198 4.371624 ACATCATCCACAAGACTGGAAA 57.628 40.909 0.00 0.00 43.79 3.13
4070 4199 4.074970 ACATCATCCACAAGACTGGAAAC 58.925 43.478 0.00 0.00 43.79 2.78
4071 4200 3.855255 TCATCCACAAGACTGGAAACA 57.145 42.857 0.00 0.00 43.79 2.83
4072 4201 4.163441 TCATCCACAAGACTGGAAACAA 57.837 40.909 0.00 0.00 43.79 2.83
4073 4202 4.136796 TCATCCACAAGACTGGAAACAAG 58.863 43.478 0.00 0.00 43.79 3.16
4074 4203 3.924114 TCCACAAGACTGGAAACAAGA 57.076 42.857 0.00 0.00 42.06 3.02
4075 4204 3.541632 TCCACAAGACTGGAAACAAGAC 58.458 45.455 0.00 0.00 42.06 3.01
4076 4205 3.054728 TCCACAAGACTGGAAACAAGACA 60.055 43.478 0.00 0.00 42.06 3.41
4077 4206 3.694072 CCACAAGACTGGAAACAAGACAA 59.306 43.478 0.00 0.00 42.06 3.18
4078 4207 4.201950 CCACAAGACTGGAAACAAGACAAG 60.202 45.833 0.00 0.00 42.06 3.16
4079 4208 3.378427 ACAAGACTGGAAACAAGACAAGC 59.622 43.478 0.00 0.00 42.06 4.01
4080 4209 2.576615 AGACTGGAAACAAGACAAGCC 58.423 47.619 0.00 0.00 42.06 4.35
4081 4210 1.264288 GACTGGAAACAAGACAAGCCG 59.736 52.381 0.00 0.00 42.06 5.52
4082 4211 0.593128 CTGGAAACAAGACAAGCCGG 59.407 55.000 0.00 0.00 42.06 6.13
4083 4212 0.181587 TGGAAACAAGACAAGCCGGA 59.818 50.000 5.05 0.00 37.44 5.14
4084 4213 0.875059 GGAAACAAGACAAGCCGGAG 59.125 55.000 5.05 0.00 0.00 4.63
4096 4225 3.827898 CCGGAGGCTCGTCTGTCC 61.828 72.222 8.69 0.00 46.14 4.02
4097 4226 3.062466 CGGAGGCTCGTCTGTCCA 61.062 66.667 8.69 0.00 0.00 4.02
4098 4227 2.888863 GGAGGCTCGTCTGTCCAG 59.111 66.667 8.69 0.00 0.00 3.86
4099 4228 1.979693 GGAGGCTCGTCTGTCCAGT 60.980 63.158 8.69 0.00 0.00 4.00
4100 4229 1.536943 GGAGGCTCGTCTGTCCAGTT 61.537 60.000 8.69 0.00 0.00 3.16
4101 4230 0.389166 GAGGCTCGTCTGTCCAGTTG 60.389 60.000 0.00 0.00 0.00 3.16
4102 4231 2.029844 GGCTCGTCTGTCCAGTTGC 61.030 63.158 0.00 0.00 0.00 4.17
4103 4232 1.005630 GCTCGTCTGTCCAGTTGCT 60.006 57.895 0.00 0.00 0.00 3.91
4104 4233 0.243907 GCTCGTCTGTCCAGTTGCTA 59.756 55.000 0.00 0.00 0.00 3.49
4105 4234 1.734047 GCTCGTCTGTCCAGTTGCTAG 60.734 57.143 0.00 0.00 0.00 3.42
4106 4235 1.813178 CTCGTCTGTCCAGTTGCTAGA 59.187 52.381 0.00 0.00 0.00 2.43
4107 4236 2.229062 CTCGTCTGTCCAGTTGCTAGAA 59.771 50.000 0.00 0.00 0.00 2.10
4108 4237 2.626266 TCGTCTGTCCAGTTGCTAGAAA 59.374 45.455 0.00 0.00 0.00 2.52
4109 4238 2.989840 CGTCTGTCCAGTTGCTAGAAAG 59.010 50.000 0.00 0.00 0.00 2.62
4140 4269 9.932207 TTACAAAAACTATAGTTAGCTAGCACA 57.068 29.630 18.31 0.42 37.25 4.57
4142 4271 8.883731 ACAAAAACTATAGTTAGCTAGCACATG 58.116 33.333 18.31 8.00 37.25 3.21
4143 4272 7.484035 AAAACTATAGTTAGCTAGCACATGC 57.516 36.000 18.31 0.00 37.25 4.06
4144 4273 5.223382 AACTATAGTTAGCTAGCACATGCG 58.777 41.667 18.83 0.59 40.49 4.73
4145 4274 6.300845 AACTATAGTTAGCTAGCACATGCGC 61.301 44.000 18.83 0.00 40.49 6.09
4146 4275 8.401516 AACTATAGTTAGCTAGCACATGCGCT 62.402 42.308 18.83 13.61 40.49 5.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
340 361 4.892934 ACAAACCAGATCAGCTAAAAACCA 59.107 37.500 0.00 0.00 0.00 3.67
725 797 1.506025 TTTTGCAAAGAGGCCCCTTT 58.494 45.000 12.41 6.40 36.87 3.11
885 957 2.165319 GGAAGTCCTACAACTTGCGT 57.835 50.000 0.00 0.00 39.55 5.24
927 999 9.719355 TGCTGTACAAATCTTACATTCTTCTTA 57.281 29.630 0.00 0.00 0.00 2.10
928 1000 8.507249 GTGCTGTACAAATCTTACATTCTTCTT 58.493 33.333 0.00 0.00 0.00 2.52
929 1001 7.661437 TGTGCTGTACAAATCTTACATTCTTCT 59.339 33.333 0.00 0.00 36.06 2.85
930 1002 7.746475 GTGTGCTGTACAAATCTTACATTCTTC 59.254 37.037 0.00 0.00 41.89 2.87
931 1003 7.308589 GGTGTGCTGTACAAATCTTACATTCTT 60.309 37.037 0.00 0.00 41.89 2.52
932 1004 6.149474 GGTGTGCTGTACAAATCTTACATTCT 59.851 38.462 0.00 0.00 41.89 2.40
933 1005 6.314784 GGTGTGCTGTACAAATCTTACATTC 58.685 40.000 0.00 0.00 41.89 2.67
934 1006 5.106712 CGGTGTGCTGTACAAATCTTACATT 60.107 40.000 0.00 0.00 41.89 2.71
935 1007 4.391830 CGGTGTGCTGTACAAATCTTACAT 59.608 41.667 0.00 0.00 41.89 2.29
936 1008 3.743911 CGGTGTGCTGTACAAATCTTACA 59.256 43.478 0.00 0.00 41.89 2.41
937 1009 3.124636 CCGGTGTGCTGTACAAATCTTAC 59.875 47.826 0.00 0.00 41.89 2.34
938 1010 3.244284 ACCGGTGTGCTGTACAAATCTTA 60.244 43.478 6.12 0.00 41.89 2.10
939 1011 2.151202 CCGGTGTGCTGTACAAATCTT 58.849 47.619 0.00 0.00 41.89 2.40
940 1012 1.071699 ACCGGTGTGCTGTACAAATCT 59.928 47.619 6.12 0.00 41.89 2.40
958 1030 2.341846 TTTGGACTGTTGGACTCACC 57.658 50.000 0.00 0.00 39.54 4.02
1055 1127 2.041762 AGGAGCTGGATGGAGCCA 59.958 61.111 0.00 0.00 40.08 4.75
1237 1309 1.902508 TGTAGGAGAAGCAGTTCCTGG 59.097 52.381 11.79 0.00 43.54 4.45
1364 1436 2.672908 CCTGCAGAGACCATGCCA 59.327 61.111 17.39 0.00 43.18 4.92
1491 1563 4.518211 ACCAATCTCTCTGAACAAAGCAAG 59.482 41.667 0.00 0.00 0.00 4.01
1559 1631 1.333619 ACAACCGTAGCAAGCACAAAG 59.666 47.619 0.00 0.00 0.00 2.77
1682 1754 2.104792 ACACTTGCAGTACATGTCCACT 59.895 45.455 0.00 0.00 34.59 4.00
1915 1987 4.269183 TGACCGCATCATCCTTACAAAAT 58.731 39.130 0.00 0.00 29.99 1.82
2072 2144 5.728637 TTGAGTAGAAGTCAATGAGAGCA 57.271 39.130 0.00 0.00 32.96 4.26
2105 2177 0.250234 CTCGACAAGCATCCTCCCAA 59.750 55.000 0.00 0.00 0.00 4.12
2177 2249 1.808512 CGCCCACAGTTTGAGTACACA 60.809 52.381 0.00 0.00 0.00 3.72
2219 2291 5.809562 ACTCTTGCTAGTGATCATCGAAAAG 59.190 40.000 0.00 1.57 0.00 2.27
2465 2537 5.750547 GCAATACAGATCGATGACTGAAGAA 59.249 40.000 18.18 4.25 37.54 2.52
2543 2615 2.364002 TGAGTTCCACATGACTTCGTCA 59.636 45.455 0.00 0.00 46.90 4.35
2779 2851 0.170561 CCGGACTAACAGGTCAGTCG 59.829 60.000 0.00 0.00 41.75 4.18
2981 3053 0.533531 CAAGCACACTGGACAGCTGA 60.534 55.000 23.35 0.00 37.41 4.26
2999 3071 0.033208 CCCAATCCCCTTTAGCAGCA 60.033 55.000 0.00 0.00 0.00 4.41
3110 3182 1.991264 CTGAGACACAACAGCTGATCG 59.009 52.381 23.35 10.45 0.00 3.69
3133 3240 3.949113 GGTTTGTGGTGGAGAAACAACTA 59.051 43.478 0.00 0.00 39.15 2.24
3142 3249 2.224621 ACAGAGATGGTTTGTGGTGGAG 60.225 50.000 0.00 0.00 0.00 3.86
3143 3250 1.774254 ACAGAGATGGTTTGTGGTGGA 59.226 47.619 0.00 0.00 0.00 4.02
3176 3283 4.768583 TCCAGCAGCAAAATTTGTTTCTT 58.231 34.783 7.60 0.00 0.00 2.52
3209 3316 6.821160 TGACAACATTTCTAAGTGTGTCTTCA 59.179 34.615 15.06 5.60 37.56 3.02
3210 3317 7.246674 TGACAACATTTCTAAGTGTGTCTTC 57.753 36.000 15.06 3.93 37.56 2.87
3214 3321 7.220030 AGAGATGACAACATTTCTAAGTGTGT 58.780 34.615 0.00 0.00 43.18 3.72
3215 3322 7.664082 AGAGATGACAACATTTCTAAGTGTG 57.336 36.000 0.00 0.00 43.18 3.82
3261 3376 5.751586 TCCCACTGGAGTTTATTTATGGTC 58.248 41.667 0.00 0.00 35.03 4.02
3266 3381 7.928873 AGATCTTTCCCACTGGAGTTTATTTA 58.071 34.615 0.00 0.00 43.07 1.40
3284 3399 2.036346 GCAAACCCACTGCAAGATCTTT 59.964 45.455 4.86 0.00 39.69 2.52
3295 3410 5.186992 GGATAACCAATAAAGCAAACCCACT 59.813 40.000 0.00 0.00 35.97 4.00
3296 3411 5.046950 TGGATAACCAATAAAGCAAACCCAC 60.047 40.000 0.00 0.00 43.91 4.61
3298 3413 5.420739 TCTGGATAACCAATAAAGCAAACCC 59.579 40.000 0.00 0.00 46.32 4.11
3299 3414 6.524101 TCTGGATAACCAATAAAGCAAACC 57.476 37.500 0.00 0.00 46.32 3.27
3307 3422 5.428457 TCTTCAGGCTCTGGATAACCAATAA 59.572 40.000 0.00 0.00 46.32 1.40
3313 3428 4.578105 CCAATTCTTCAGGCTCTGGATAAC 59.422 45.833 2.86 0.00 31.51 1.89
3317 3432 1.283029 CCCAATTCTTCAGGCTCTGGA 59.717 52.381 2.86 0.00 31.51 3.86
3323 3438 1.186200 GTTCCCCCAATTCTTCAGGC 58.814 55.000 0.00 0.00 0.00 4.85
3330 3445 1.077169 AGAACCTGGTTCCCCCAATTC 59.923 52.381 30.69 8.44 44.65 2.17
3362 3477 7.105241 AGAAATGAATTACCTGCAGATTTCC 57.895 36.000 17.39 5.88 31.56 3.13
3397 3516 3.760151 CAGAAAAATGGCATCAGTGAGGA 59.240 43.478 9.40 0.00 0.00 3.71
3408 3527 2.669364 CACTGACAGCAGAAAAATGGC 58.331 47.619 1.25 0.00 45.17 4.40
3428 3547 2.630098 TGTCATCCAGCCTATCTGTAGC 59.370 50.000 0.00 0.00 41.25 3.58
3473 3592 5.982516 TGCTTGTTTTGCTACAAAATAGTGG 59.017 36.000 8.57 3.12 37.55 4.00
3474 3593 6.697019 ACTGCTTGTTTTGCTACAAAATAGTG 59.303 34.615 8.57 5.06 37.55 2.74
3484 3603 7.488322 AGTTAAATTGACTGCTTGTTTTGCTA 58.512 30.769 0.00 0.00 0.00 3.49
3485 3604 6.340522 AGTTAAATTGACTGCTTGTTTTGCT 58.659 32.000 0.00 0.00 0.00 3.91
3486 3605 6.588348 AGTTAAATTGACTGCTTGTTTTGC 57.412 33.333 0.00 0.00 0.00 3.68
3487 3606 8.915654 GGATAGTTAAATTGACTGCTTGTTTTG 58.084 33.333 0.33 0.00 0.00 2.44
3488 3607 7.807907 CGGATAGTTAAATTGACTGCTTGTTTT 59.192 33.333 0.33 0.00 0.00 2.43
3521 3640 2.940994 TTGGACCATTTGTCTCCGAA 57.059 45.000 0.00 0.00 43.89 4.30
3523 3642 2.504367 ACTTTGGACCATTTGTCTCCG 58.496 47.619 0.00 0.00 43.89 4.63
3563 3682 8.859090 TGTAAAATGAATGTTGGTTTCTCTCAT 58.141 29.630 0.00 0.00 0.00 2.90
3564 3683 8.231692 TGTAAAATGAATGTTGGTTTCTCTCA 57.768 30.769 0.00 0.00 0.00 3.27
3595 3714 1.061546 ACGCTCCCCCACTAGAAAAA 58.938 50.000 0.00 0.00 0.00 1.94
3646 3765 9.393512 ACTCAAGAATTTCAGATCTTAGATTGG 57.606 33.333 0.00 0.00 34.24 3.16
3712 3831 9.753674 TCTTCATAAACAATTTAAGAGGTGGAT 57.246 29.630 0.00 0.00 0.00 3.41
3713 3832 9.581289 TTCTTCATAAACAATTTAAGAGGTGGA 57.419 29.630 0.00 0.00 0.00 4.02
3735 3854 4.336713 GGTTCAGACTGCACTTTCTTTCTT 59.663 41.667 5.22 0.00 0.00 2.52
3757 3876 2.793288 AATAACTAACCGTGGGTGGG 57.207 50.000 0.00 0.00 35.34 4.61
3808 3930 5.455392 ACTTTTCTTGCAATCTGAATGACG 58.545 37.500 0.00 0.00 0.00 4.35
3863 3992 2.589798 TGTCCGGATTCCATTCGTAC 57.410 50.000 7.81 0.00 0.00 3.67
3870 3999 4.771114 AACTTGATATGTCCGGATTCCA 57.229 40.909 7.81 0.24 0.00 3.53
3939 4068 6.426980 TGAATCATGATGTGTGAAGTTAGC 57.573 37.500 9.46 0.00 0.00 3.09
3950 4079 6.015688 GGAGCACCATATTTGAATCATGATGT 60.016 38.462 9.46 0.00 35.97 3.06
3952 4081 6.312529 AGGAGCACCATATTTGAATCATGAT 58.687 36.000 1.18 1.18 38.94 2.45
3960 4089 6.553953 TGTAAGTAGGAGCACCATATTTGA 57.446 37.500 2.07 0.00 38.94 2.69
3966 4095 5.636903 ATTCATGTAAGTAGGAGCACCAT 57.363 39.130 2.07 0.00 38.94 3.55
4003 4132 4.762289 AACTAGTCATGATGGTCTTCCC 57.238 45.455 0.00 0.00 0.00 3.97
4004 4133 8.616076 CAATAAAACTAGTCATGATGGTCTTCC 58.384 37.037 0.00 0.00 0.00 3.46
4005 4134 8.616076 CCAATAAAACTAGTCATGATGGTCTTC 58.384 37.037 0.00 0.00 0.00 2.87
4006 4135 8.328758 TCCAATAAAACTAGTCATGATGGTCTT 58.671 33.333 0.00 0.00 0.00 3.01
4007 4136 7.861629 TCCAATAAAACTAGTCATGATGGTCT 58.138 34.615 0.00 0.00 0.00 3.85
4008 4137 8.398665 GTTCCAATAAAACTAGTCATGATGGTC 58.601 37.037 0.00 7.47 0.00 4.02
4009 4138 8.109634 AGTTCCAATAAAACTAGTCATGATGGT 58.890 33.333 0.00 0.00 35.25 3.55
4010 4139 8.511604 AGTTCCAATAAAACTAGTCATGATGG 57.488 34.615 0.00 3.29 35.25 3.51
4014 4143 9.774742 GCTTAAGTTCCAATAAAACTAGTCATG 57.225 33.333 4.02 0.00 35.96 3.07
4015 4144 9.515226 TGCTTAAGTTCCAATAAAACTAGTCAT 57.485 29.630 4.02 0.00 35.96 3.06
4016 4145 8.911918 TGCTTAAGTTCCAATAAAACTAGTCA 57.088 30.769 4.02 0.00 35.96 3.41
4017 4146 9.216117 TCTGCTTAAGTTCCAATAAAACTAGTC 57.784 33.333 4.02 0.00 35.96 2.59
4018 4147 9.569122 TTCTGCTTAAGTTCCAATAAAACTAGT 57.431 29.630 4.02 0.00 35.96 2.57
4027 4156 9.023962 TGATGTAATTTCTGCTTAAGTTCCAAT 57.976 29.630 4.02 0.00 0.00 3.16
4028 4157 8.402798 TGATGTAATTTCTGCTTAAGTTCCAA 57.597 30.769 4.02 0.00 0.00 3.53
4029 4158 7.994425 TGATGTAATTTCTGCTTAAGTTCCA 57.006 32.000 4.02 0.00 0.00 3.53
4030 4159 8.131731 GGATGATGTAATTTCTGCTTAAGTTCC 58.868 37.037 4.02 0.00 0.00 3.62
4031 4160 8.677300 TGGATGATGTAATTTCTGCTTAAGTTC 58.323 33.333 4.02 0.00 0.00 3.01
4032 4161 8.462016 GTGGATGATGTAATTTCTGCTTAAGTT 58.538 33.333 4.02 0.00 0.00 2.66
4033 4162 7.611467 TGTGGATGATGTAATTTCTGCTTAAGT 59.389 33.333 4.02 0.00 0.00 2.24
4034 4163 7.988737 TGTGGATGATGTAATTTCTGCTTAAG 58.011 34.615 0.00 0.00 0.00 1.85
4035 4164 7.936496 TGTGGATGATGTAATTTCTGCTTAA 57.064 32.000 0.00 0.00 0.00 1.85
4036 4165 7.828717 TCTTGTGGATGATGTAATTTCTGCTTA 59.171 33.333 0.00 0.00 0.00 3.09
4037 4166 6.660521 TCTTGTGGATGATGTAATTTCTGCTT 59.339 34.615 0.00 0.00 0.00 3.91
4038 4167 6.094603 GTCTTGTGGATGATGTAATTTCTGCT 59.905 38.462 0.00 0.00 0.00 4.24
4039 4168 6.094603 AGTCTTGTGGATGATGTAATTTCTGC 59.905 38.462 0.00 0.00 0.00 4.26
4040 4169 7.414873 CCAGTCTTGTGGATGATGTAATTTCTG 60.415 40.741 0.00 0.00 40.44 3.02
4041 4170 6.600822 CCAGTCTTGTGGATGATGTAATTTCT 59.399 38.462 0.00 0.00 40.44 2.52
4042 4171 6.599244 TCCAGTCTTGTGGATGATGTAATTTC 59.401 38.462 0.00 0.00 41.99 2.17
4043 4172 6.484288 TCCAGTCTTGTGGATGATGTAATTT 58.516 36.000 0.00 0.00 41.99 1.82
4044 4173 6.065976 TCCAGTCTTGTGGATGATGTAATT 57.934 37.500 0.00 0.00 41.99 1.40
4045 4174 5.698741 TCCAGTCTTGTGGATGATGTAAT 57.301 39.130 0.00 0.00 41.99 1.89
4046 4175 5.497464 TTCCAGTCTTGTGGATGATGTAA 57.503 39.130 0.00 0.00 46.31 2.41
4047 4176 5.221823 TGTTTCCAGTCTTGTGGATGATGTA 60.222 40.000 0.00 0.00 46.31 2.29
4048 4177 4.074970 GTTTCCAGTCTTGTGGATGATGT 58.925 43.478 0.00 0.00 46.31 3.06
4049 4178 4.074259 TGTTTCCAGTCTTGTGGATGATG 58.926 43.478 0.00 0.00 46.31 3.07
4050 4179 4.371624 TGTTTCCAGTCTTGTGGATGAT 57.628 40.909 0.00 0.00 46.31 2.45
4051 4180 3.855255 TGTTTCCAGTCTTGTGGATGA 57.145 42.857 0.00 0.00 46.31 2.92
4052 4181 4.023707 GTCTTGTTTCCAGTCTTGTGGATG 60.024 45.833 0.00 0.00 46.31 3.51
4053 4182 4.137543 GTCTTGTTTCCAGTCTTGTGGAT 58.862 43.478 0.00 0.00 46.31 3.41
4054 4183 3.054728 TGTCTTGTTTCCAGTCTTGTGGA 60.055 43.478 0.00 0.00 45.37 4.02
4055 4184 3.278574 TGTCTTGTTTCCAGTCTTGTGG 58.721 45.455 0.00 0.00 39.19 4.17
4056 4185 4.731773 GCTTGTCTTGTTTCCAGTCTTGTG 60.732 45.833 0.00 0.00 0.00 3.33
4057 4186 3.378427 GCTTGTCTTGTTTCCAGTCTTGT 59.622 43.478 0.00 0.00 0.00 3.16
4058 4187 3.243201 GGCTTGTCTTGTTTCCAGTCTTG 60.243 47.826 0.00 0.00 0.00 3.02
4059 4188 2.952310 GGCTTGTCTTGTTTCCAGTCTT 59.048 45.455 0.00 0.00 0.00 3.01
4060 4189 2.576615 GGCTTGTCTTGTTTCCAGTCT 58.423 47.619 0.00 0.00 0.00 3.24
4061 4190 1.264288 CGGCTTGTCTTGTTTCCAGTC 59.736 52.381 0.00 0.00 0.00 3.51
4062 4191 1.308998 CGGCTTGTCTTGTTTCCAGT 58.691 50.000 0.00 0.00 0.00 4.00
4063 4192 0.593128 CCGGCTTGTCTTGTTTCCAG 59.407 55.000 0.00 0.00 0.00 3.86
4064 4193 0.181587 TCCGGCTTGTCTTGTTTCCA 59.818 50.000 0.00 0.00 0.00 3.53
4065 4194 0.875059 CTCCGGCTTGTCTTGTTTCC 59.125 55.000 0.00 0.00 0.00 3.13
4066 4195 0.875059 CCTCCGGCTTGTCTTGTTTC 59.125 55.000 0.00 0.00 0.00 2.78
4067 4196 1.172812 GCCTCCGGCTTGTCTTGTTT 61.173 55.000 0.00 0.00 46.69 2.83
4068 4197 1.600916 GCCTCCGGCTTGTCTTGTT 60.601 57.895 0.00 0.00 46.69 2.83
4069 4198 2.032681 GCCTCCGGCTTGTCTTGT 59.967 61.111 0.00 0.00 46.69 3.16
4079 4208 3.827898 GGACAGACGAGCCTCCGG 61.828 72.222 0.00 0.00 0.00 5.14
4080 4209 3.057547 CTGGACAGACGAGCCTCCG 62.058 68.421 0.00 0.00 0.00 4.63
4081 4210 1.536943 AACTGGACAGACGAGCCTCC 61.537 60.000 6.29 0.00 0.00 4.30
4082 4211 0.389166 CAACTGGACAGACGAGCCTC 60.389 60.000 6.29 0.00 0.00 4.70
4083 4212 1.668294 CAACTGGACAGACGAGCCT 59.332 57.895 6.29 0.00 0.00 4.58
4084 4213 2.029844 GCAACTGGACAGACGAGCC 61.030 63.158 6.29 0.00 0.00 4.70
4085 4214 0.243907 TAGCAACTGGACAGACGAGC 59.756 55.000 6.29 4.47 0.00 5.03
4086 4215 1.813178 TCTAGCAACTGGACAGACGAG 59.187 52.381 6.29 1.78 0.00 4.18
4087 4216 1.905637 TCTAGCAACTGGACAGACGA 58.094 50.000 6.29 0.00 0.00 4.20
4088 4217 2.724977 TTCTAGCAACTGGACAGACG 57.275 50.000 6.29 0.00 0.00 4.18
4089 4218 2.739379 GCTTTCTAGCAACTGGACAGAC 59.261 50.000 6.29 0.00 46.95 3.51
4090 4219 3.045601 GCTTTCTAGCAACTGGACAGA 57.954 47.619 6.29 0.00 46.95 3.41
4114 4243 9.932207 TGTGCTAGCTAACTATAGTTTTTGTAA 57.068 29.630 22.66 3.56 39.31 2.41
4116 4245 8.883731 CATGTGCTAGCTAACTATAGTTTTTGT 58.116 33.333 22.66 8.64 39.31 2.83
4117 4246 7.852945 GCATGTGCTAGCTAACTATAGTTTTTG 59.147 37.037 22.66 14.04 37.48 2.44
4118 4247 7.254455 CGCATGTGCTAGCTAACTATAGTTTTT 60.254 37.037 22.66 11.36 37.93 1.94
4119 4248 6.201044 CGCATGTGCTAGCTAACTATAGTTTT 59.799 38.462 22.66 11.67 37.93 2.43
4120 4249 5.692204 CGCATGTGCTAGCTAACTATAGTTT 59.308 40.000 22.66 8.35 37.93 2.66
4121 4250 5.223382 CGCATGTGCTAGCTAACTATAGTT 58.777 41.667 21.35 21.35 39.31 2.24
4122 4251 4.799678 CGCATGTGCTAGCTAACTATAGT 58.200 43.478 17.23 0.00 39.32 2.12
4123 4252 3.610242 GCGCATGTGCTAGCTAACTATAG 59.390 47.826 23.77 0.00 39.32 1.31
4124 4253 3.255888 AGCGCATGTGCTAGCTAACTATA 59.744 43.478 31.53 0.00 45.14 1.31
4125 4254 2.036475 AGCGCATGTGCTAGCTAACTAT 59.964 45.455 31.53 4.12 45.14 2.12
4126 4255 1.409064 AGCGCATGTGCTAGCTAACTA 59.591 47.619 31.53 0.00 45.14 2.24
4127 4256 0.176680 AGCGCATGTGCTAGCTAACT 59.823 50.000 31.53 5.71 45.14 2.24
4128 4257 2.682893 AGCGCATGTGCTAGCTAAC 58.317 52.632 31.53 7.29 45.14 2.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.