Multiple sequence alignment - TraesCS5A01G149900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G149900 chr5A 100.000 3732 0 0 1 3732 327724716 327728447 0.000000e+00 6892.0
1 TraesCS5A01G149900 chr5D 97.077 2155 44 5 583 2735 229143185 229141048 0.000000e+00 3613.0
2 TraesCS5A01G149900 chr5D 84.072 609 62 11 3155 3732 297306475 297305871 4.210000e-154 555.0
3 TraesCS5A01G149900 chr5D 90.102 394 32 5 6 395 229143570 229143180 4.300000e-139 505.0
4 TraesCS5A01G149900 chr5D 88.390 267 23 3 2730 2996 229140953 229140695 7.780000e-82 315.0
5 TraesCS5A01G149900 chr5B 96.692 2116 51 5 622 2733 276823050 276825150 0.000000e+00 3502.0
6 TraesCS5A01G149900 chr5B 89.169 397 39 2 1 395 276802842 276803236 3.350000e-135 492.0
7 TraesCS5A01G149900 chr5B 88.861 404 29 8 3343 3732 709529073 709529474 2.020000e-132 483.0
8 TraesCS5A01G149900 chr2D 90.942 552 31 6 3200 3732 422784436 422784987 0.000000e+00 725.0
9 TraesCS5A01G149900 chr2D 86.833 600 53 12 3147 3732 127944360 127943773 0.000000e+00 647.0
10 TraesCS5A01G149900 chr2D 83.226 620 57 23 3147 3732 603207899 603207293 3.300000e-145 525.0
11 TraesCS5A01G149900 chr7B 88.689 557 35 13 3202 3732 334790394 334789840 0.000000e+00 654.0
12 TraesCS5A01G149900 chr7B 85.246 610 67 8 3143 3732 453115233 453115839 1.150000e-169 606.0
13 TraesCS5A01G149900 chr7B 84.740 616 58 18 3147 3732 43749652 43750261 5.370000e-163 584.0
14 TraesCS5A01G149900 chr4D 85.974 606 61 8 3146 3732 402562234 402562834 8.800000e-176 627.0
15 TraesCS5A01G149900 chr4D 72.737 939 181 59 1310 2197 329300936 329301850 2.880000e-61 246.0
16 TraesCS5A01G149900 chr4D 89.444 180 17 2 396 574 385734011 385733833 3.750000e-55 226.0
17 TraesCS5A01G149900 chr2B 85.507 621 43 17 3143 3732 631728832 631729436 4.120000e-169 604.0
18 TraesCS5A01G149900 chr2B 81.178 611 77 19 3147 3732 419325918 419325321 1.220000e-124 457.0
19 TraesCS5A01G149900 chr2B 89.831 177 16 2 399 574 430220906 430221081 3.750000e-55 226.0
20 TraesCS5A01G149900 chr3D 85.314 606 46 9 3143 3732 580092198 580092776 1.490000e-163 586.0
21 TraesCS5A01G149900 chr6A 84.754 610 55 19 3142 3732 559420896 559420306 8.990000e-161 577.0
22 TraesCS5A01G149900 chr6A 75.938 320 56 17 1889 2197 100652727 100652418 1.080000e-30 145.0
23 TraesCS5A01G149900 chr1A 84.411 603 68 12 3147 3730 561220766 561220171 1.500000e-158 569.0
24 TraesCS5A01G149900 chr1A 84.080 603 69 14 3147 3730 561161512 561160918 1.170000e-154 556.0
25 TraesCS5A01G149900 chr6B 83.213 554 78 11 3187 3732 487769665 487770211 9.310000e-136 494.0
26 TraesCS5A01G149900 chr6B 76.324 321 53 19 1889 2197 159129167 159129476 2.320000e-32 150.0
27 TraesCS5A01G149900 chr7A 95.849 265 10 1 3469 3732 228259585 228259321 9.580000e-116 427.0
28 TraesCS5A01G149900 chr7A 89.444 180 18 1 396 574 115736259 115736438 3.750000e-55 226.0
29 TraesCS5A01G149900 chr7D 92.537 201 12 3 391 590 585489962 585490160 6.100000e-73 285.0
30 TraesCS5A01G149900 chr7D 88.542 192 20 2 399 590 616210111 616210300 8.060000e-57 231.0
31 TraesCS5A01G149900 chr2A 89.418 189 16 4 392 579 83713168 83712983 6.230000e-58 235.0
32 TraesCS5A01G149900 chr2A 87.000 200 19 7 392 590 25378820 25379013 6.280000e-53 219.0
33 TraesCS5A01G149900 chr2A 86.139 202 23 3 392 590 29644766 29644965 2.920000e-51 213.0
34 TraesCS5A01G149900 chr4A 85.714 203 23 6 388 588 47138084 47137886 3.780000e-50 209.0
35 TraesCS5A01G149900 chr4A 77.778 333 60 13 1872 2197 140772694 140772369 3.800000e-45 193.0
36 TraesCS5A01G149900 chr1B 78.078 333 59 13 1872 2197 135245742 135245417 8.180000e-47 198.0
37 TraesCS5A01G149900 chr4B 75.052 481 76 31 1872 2343 409249835 409250280 2.290000e-42 183.0
38 TraesCS5A01G149900 chr6D 75.938 320 56 17 1889 2197 83426331 83426640 1.080000e-30 145.0
39 TraesCS5A01G149900 chr3A 94.118 34 2 0 3141 3174 57783923 57783956 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G149900 chr5A 327724716 327728447 3731 False 6892.000000 6892 100.000000 1 3732 1 chr5A.!!$F1 3731
1 TraesCS5A01G149900 chr5D 229140695 229143570 2875 True 1477.666667 3613 91.856333 6 2996 3 chr5D.!!$R2 2990
2 TraesCS5A01G149900 chr5D 297305871 297306475 604 True 555.000000 555 84.072000 3155 3732 1 chr5D.!!$R1 577
3 TraesCS5A01G149900 chr5B 276823050 276825150 2100 False 3502.000000 3502 96.692000 622 2733 1 chr5B.!!$F2 2111
4 TraesCS5A01G149900 chr2D 422784436 422784987 551 False 725.000000 725 90.942000 3200 3732 1 chr2D.!!$F1 532
5 TraesCS5A01G149900 chr2D 127943773 127944360 587 True 647.000000 647 86.833000 3147 3732 1 chr2D.!!$R1 585
6 TraesCS5A01G149900 chr2D 603207293 603207899 606 True 525.000000 525 83.226000 3147 3732 1 chr2D.!!$R2 585
7 TraesCS5A01G149900 chr7B 334789840 334790394 554 True 654.000000 654 88.689000 3202 3732 1 chr7B.!!$R1 530
8 TraesCS5A01G149900 chr7B 453115233 453115839 606 False 606.000000 606 85.246000 3143 3732 1 chr7B.!!$F2 589
9 TraesCS5A01G149900 chr7B 43749652 43750261 609 False 584.000000 584 84.740000 3147 3732 1 chr7B.!!$F1 585
10 TraesCS5A01G149900 chr4D 402562234 402562834 600 False 627.000000 627 85.974000 3146 3732 1 chr4D.!!$F2 586
11 TraesCS5A01G149900 chr4D 329300936 329301850 914 False 246.000000 246 72.737000 1310 2197 1 chr4D.!!$F1 887
12 TraesCS5A01G149900 chr2B 631728832 631729436 604 False 604.000000 604 85.507000 3143 3732 1 chr2B.!!$F2 589
13 TraesCS5A01G149900 chr2B 419325321 419325918 597 True 457.000000 457 81.178000 3147 3732 1 chr2B.!!$R1 585
14 TraesCS5A01G149900 chr3D 580092198 580092776 578 False 586.000000 586 85.314000 3143 3732 1 chr3D.!!$F1 589
15 TraesCS5A01G149900 chr6A 559420306 559420896 590 True 577.000000 577 84.754000 3142 3732 1 chr6A.!!$R2 590
16 TraesCS5A01G149900 chr1A 561220171 561220766 595 True 569.000000 569 84.411000 3147 3730 1 chr1A.!!$R2 583
17 TraesCS5A01G149900 chr1A 561160918 561161512 594 True 556.000000 556 84.080000 3147 3730 1 chr1A.!!$R1 583
18 TraesCS5A01G149900 chr6B 487769665 487770211 546 False 494.000000 494 83.213000 3187 3732 1 chr6B.!!$F2 545

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
491 496 0.665835 TTCGTGCAACCATTTTCGCT 59.334 45.0 0.00 0.00 0.00 4.93 F
1016 1022 0.169672 GCAACGTACGTAGCTGAGGA 59.830 55.0 23.12 0.00 0.00 3.71 F
1030 1036 0.545071 TGAGGACAGCCATGGAGTCA 60.545 55.0 28.27 13.81 36.29 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1774 1783 1.941734 GAGCGCGATCTTCTGTCCG 60.942 63.158 18.63 0.0 0.00 4.79 R
2598 2652 0.528466 TAGCGATCTTGCTTGGCTCG 60.528 55.000 0.19 0.0 44.46 5.03 R
2793 2948 1.269517 GGTGGCGTTCAAAGAAATGCA 60.270 47.619 0.00 0.0 41.88 3.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 25 3.678072 CAGAAAGTCGGCGATTTAGACAA 59.322 43.478 18.06 0.00 37.36 3.18
51 53 4.478206 AGACGATGACCATGAACTGATT 57.522 40.909 0.00 0.00 0.00 2.57
57 59 3.084039 TGACCATGAACTGATTGCCTTC 58.916 45.455 0.00 0.00 0.00 3.46
127 130 1.409790 CAGACAGATGAGAGGCCTCTG 59.590 57.143 39.86 26.52 40.61 3.35
128 131 0.752054 GACAGATGAGAGGCCTCTGG 59.248 60.000 39.86 23.15 40.61 3.86
145 148 6.295067 GGCCTCTGGTACATGTTAAACAAAAT 60.295 38.462 2.30 0.00 38.20 1.82
163 166 9.887629 AAACAAAATATTTGCCATGATGACATA 57.112 25.926 0.39 0.00 35.09 2.29
189 192 5.644188 TGTCTCCAAGGGAAAGATTGAATT 58.356 37.500 0.00 0.00 0.00 2.17
196 199 6.146021 CCAAGGGAAAGATTGAATTTTGTTCG 59.854 38.462 0.00 0.00 0.00 3.95
205 208 9.507280 AAGATTGAATTTTGTTCGCATACATAG 57.493 29.630 0.00 0.00 0.00 2.23
206 209 8.677300 AGATTGAATTTTGTTCGCATACATAGT 58.323 29.630 0.00 0.00 0.00 2.12
215 220 5.302313 TGTTCGCATACATAGTGGTATACCA 59.698 40.000 21.05 21.05 45.30 3.25
251 256 9.231297 ACAATACATGGCAATAACAGATATACC 57.769 33.333 0.00 0.00 0.00 2.73
275 280 7.556275 ACCATCTTATCAAATCGGTTACAACAT 59.444 33.333 0.00 0.00 0.00 2.71
350 355 8.295569 CAGTTAGTCTGTTAACTTGAGTTACC 57.704 38.462 7.22 0.00 40.86 2.85
352 357 8.702819 AGTTAGTCTGTTAACTTGAGTTACCTT 58.297 33.333 7.22 0.00 40.11 3.50
358 363 6.285990 TGTTAACTTGAGTTACCTTGAGTCC 58.714 40.000 7.22 0.00 39.92 3.85
389 394 2.767960 TGAGCCTGCAGAAGATCATACA 59.232 45.455 17.39 0.00 0.00 2.29
390 395 3.181468 TGAGCCTGCAGAAGATCATACAG 60.181 47.826 17.39 0.00 0.00 2.74
391 396 3.036819 AGCCTGCAGAAGATCATACAGA 58.963 45.455 17.39 0.00 0.00 3.41
392 397 3.453717 AGCCTGCAGAAGATCATACAGAA 59.546 43.478 17.39 0.00 0.00 3.02
393 398 4.080695 AGCCTGCAGAAGATCATACAGAAA 60.081 41.667 17.39 0.00 0.00 2.52
394 399 4.637534 GCCTGCAGAAGATCATACAGAAAA 59.362 41.667 17.39 0.00 0.00 2.29
395 400 5.448360 GCCTGCAGAAGATCATACAGAAAAC 60.448 44.000 17.39 0.00 0.00 2.43
396 401 5.645067 CCTGCAGAAGATCATACAGAAAACA 59.355 40.000 17.39 0.00 0.00 2.83
397 402 6.183360 CCTGCAGAAGATCATACAGAAAACAG 60.183 42.308 17.39 0.00 0.00 3.16
398 403 6.233434 TGCAGAAGATCATACAGAAAACAGT 58.767 36.000 0.00 0.00 0.00 3.55
399 404 6.712095 TGCAGAAGATCATACAGAAAACAGTT 59.288 34.615 0.00 0.00 0.00 3.16
400 405 7.229306 TGCAGAAGATCATACAGAAAACAGTTT 59.771 33.333 0.00 0.00 0.00 2.66
401 406 8.078596 GCAGAAGATCATACAGAAAACAGTTTT 58.921 33.333 11.22 11.22 35.12 2.43
402 407 9.390795 CAGAAGATCATACAGAAAACAGTTTTG 57.609 33.333 16.21 6.11 31.94 2.44
403 408 8.078596 AGAAGATCATACAGAAAACAGTTTTGC 58.921 33.333 16.21 7.83 31.94 3.68
404 409 7.516198 AGATCATACAGAAAACAGTTTTGCT 57.484 32.000 16.21 9.81 29.47 3.91
405 410 8.621532 AGATCATACAGAAAACAGTTTTGCTA 57.378 30.769 16.21 3.10 28.31 3.49
406 411 9.066892 AGATCATACAGAAAACAGTTTTGCTAA 57.933 29.630 16.21 5.74 28.31 3.09
407 412 9.677567 GATCATACAGAAAACAGTTTTGCTAAA 57.322 29.630 16.21 5.46 28.31 1.85
408 413 9.683069 ATCATACAGAAAACAGTTTTGCTAAAG 57.317 29.630 16.21 2.85 28.31 1.85
409 414 7.647715 TCATACAGAAAACAGTTTTGCTAAAGC 59.352 33.333 16.21 0.00 42.50 3.51
433 438 8.954950 GCATATCTAGATGTGCCATAAGTATT 57.045 34.615 32.93 0.41 46.14 1.89
434 439 8.824781 GCATATCTAGATGTGCCATAAGTATTG 58.175 37.037 32.93 6.69 46.14 1.90
435 440 8.824781 CATATCTAGATGTGCCATAAGTATTGC 58.175 37.037 15.51 0.00 0.00 3.56
436 441 6.173427 TCTAGATGTGCCATAAGTATTGCA 57.827 37.500 0.00 0.00 32.69 4.08
444 449 6.866010 TGCCATAAGTATTGCACATCTAAG 57.134 37.500 0.00 0.00 30.49 2.18
445 450 6.356556 TGCCATAAGTATTGCACATCTAAGT 58.643 36.000 0.00 0.00 30.49 2.24
446 451 6.483307 TGCCATAAGTATTGCACATCTAAGTC 59.517 38.462 0.00 0.00 30.49 3.01
447 452 6.483307 GCCATAAGTATTGCACATCTAAGTCA 59.517 38.462 0.00 0.00 0.00 3.41
448 453 7.173907 GCCATAAGTATTGCACATCTAAGTCAT 59.826 37.037 0.00 0.00 0.00 3.06
449 454 9.710900 CCATAAGTATTGCACATCTAAGTCATA 57.289 33.333 0.00 0.00 0.00 2.15
452 457 7.664082 AGTATTGCACATCTAAGTCATATGC 57.336 36.000 0.00 0.00 0.00 3.14
453 458 5.954296 ATTGCACATCTAAGTCATATGCC 57.046 39.130 0.00 0.00 0.00 4.40
454 459 4.420522 TGCACATCTAAGTCATATGCCA 57.579 40.909 0.00 0.00 0.00 4.92
455 460 4.779696 TGCACATCTAAGTCATATGCCAA 58.220 39.130 0.00 0.00 0.00 4.52
456 461 5.379187 TGCACATCTAAGTCATATGCCAAT 58.621 37.500 0.00 0.00 0.00 3.16
457 462 5.239963 TGCACATCTAAGTCATATGCCAATG 59.760 40.000 0.00 0.00 0.00 2.82
458 463 5.471116 GCACATCTAAGTCATATGCCAATGA 59.529 40.000 0.00 0.00 33.48 2.57
459 464 6.150641 GCACATCTAAGTCATATGCCAATGAT 59.849 38.462 0.00 0.00 38.13 2.45
460 465 7.309012 GCACATCTAAGTCATATGCCAATGATT 60.309 37.037 0.00 0.00 38.13 2.57
461 466 8.573885 CACATCTAAGTCATATGCCAATGATTT 58.426 33.333 0.00 9.88 38.13 2.17
462 467 9.139734 ACATCTAAGTCATATGCCAATGATTTT 57.860 29.630 10.15 7.13 38.13 1.82
465 470 8.773645 TCTAAGTCATATGCCAATGATTTTACG 58.226 33.333 10.15 0.00 38.13 3.18
466 471 6.942532 AGTCATATGCCAATGATTTTACGT 57.057 33.333 0.00 0.00 38.13 3.57
467 472 6.728200 AGTCATATGCCAATGATTTTACGTG 58.272 36.000 0.00 0.00 38.13 4.49
468 473 6.542005 AGTCATATGCCAATGATTTTACGTGA 59.458 34.615 0.00 0.00 38.13 4.35
469 474 7.066887 AGTCATATGCCAATGATTTTACGTGAA 59.933 33.333 0.00 0.00 38.13 3.18
470 475 7.376866 GTCATATGCCAATGATTTTACGTGAAG 59.623 37.037 0.00 0.00 38.13 3.02
471 476 5.895636 ATGCCAATGATTTTACGTGAAGA 57.104 34.783 0.00 0.00 0.00 2.87
472 477 5.895636 TGCCAATGATTTTACGTGAAGAT 57.104 34.783 0.00 0.00 0.00 2.40
473 478 6.266168 TGCCAATGATTTTACGTGAAGATT 57.734 33.333 0.00 0.00 0.00 2.40
474 479 6.321717 TGCCAATGATTTTACGTGAAGATTC 58.678 36.000 0.00 0.00 0.00 2.52
475 480 5.452302 GCCAATGATTTTACGTGAAGATTCG 59.548 40.000 0.00 0.00 0.00 3.34
476 481 6.542852 CCAATGATTTTACGTGAAGATTCGT 58.457 36.000 0.00 0.00 42.82 3.85
477 482 6.465781 CCAATGATTTTACGTGAAGATTCGTG 59.534 38.462 0.00 0.00 40.50 4.35
478 483 4.953269 TGATTTTACGTGAAGATTCGTGC 58.047 39.130 0.00 0.00 40.50 5.34
479 484 4.449405 TGATTTTACGTGAAGATTCGTGCA 59.551 37.500 0.00 0.00 40.50 4.57
480 485 4.797693 TTTTACGTGAAGATTCGTGCAA 57.202 36.364 0.00 0.00 40.50 4.08
481 486 3.781341 TTACGTGAAGATTCGTGCAAC 57.219 42.857 0.00 0.00 40.50 4.17
482 487 0.865769 ACGTGAAGATTCGTGCAACC 59.134 50.000 0.00 0.00 38.85 3.77
483 488 0.865111 CGTGAAGATTCGTGCAACCA 59.135 50.000 0.00 0.00 0.00 3.67
484 489 1.464608 CGTGAAGATTCGTGCAACCAT 59.535 47.619 0.00 0.00 0.00 3.55
485 490 2.095768 CGTGAAGATTCGTGCAACCATT 60.096 45.455 0.00 0.00 0.00 3.16
486 491 3.609175 CGTGAAGATTCGTGCAACCATTT 60.609 43.478 0.00 0.00 0.00 2.32
487 492 4.298332 GTGAAGATTCGTGCAACCATTTT 58.702 39.130 0.00 0.00 0.00 1.82
488 493 4.382754 GTGAAGATTCGTGCAACCATTTTC 59.617 41.667 0.00 0.00 0.00 2.29
489 494 3.201726 AGATTCGTGCAACCATTTTCG 57.798 42.857 0.00 0.00 0.00 3.46
490 495 1.648681 GATTCGTGCAACCATTTTCGC 59.351 47.619 0.00 0.00 0.00 4.70
491 496 0.665835 TTCGTGCAACCATTTTCGCT 59.334 45.000 0.00 0.00 0.00 4.93
492 497 1.514003 TCGTGCAACCATTTTCGCTA 58.486 45.000 0.00 0.00 0.00 4.26
493 498 1.463056 TCGTGCAACCATTTTCGCTAG 59.537 47.619 0.00 0.00 0.00 3.42
494 499 1.196808 CGTGCAACCATTTTCGCTAGT 59.803 47.619 0.00 0.00 0.00 2.57
495 500 2.724839 CGTGCAACCATTTTCGCTAGTC 60.725 50.000 0.00 0.00 0.00 2.59
496 501 2.484264 GTGCAACCATTTTCGCTAGTCT 59.516 45.455 0.00 0.00 0.00 3.24
497 502 3.058224 GTGCAACCATTTTCGCTAGTCTT 60.058 43.478 0.00 0.00 0.00 3.01
498 503 3.568007 TGCAACCATTTTCGCTAGTCTTT 59.432 39.130 0.00 0.00 0.00 2.52
499 504 4.037446 TGCAACCATTTTCGCTAGTCTTTT 59.963 37.500 0.00 0.00 0.00 2.27
500 505 4.982295 GCAACCATTTTCGCTAGTCTTTTT 59.018 37.500 0.00 0.00 0.00 1.94
537 542 9.778741 TTTAGTTTCATTGAGTCACTTAGATGT 57.221 29.630 0.00 0.00 0.00 3.06
538 543 7.664082 AGTTTCATTGAGTCACTTAGATGTG 57.336 36.000 0.00 0.00 39.15 3.21
539 544 6.148480 AGTTTCATTGAGTCACTTAGATGTGC 59.852 38.462 0.00 0.00 37.81 4.57
540 545 5.151297 TCATTGAGTCACTTAGATGTGCA 57.849 39.130 0.00 0.00 37.81 4.57
541 546 5.550290 TCATTGAGTCACTTAGATGTGCAA 58.450 37.500 0.00 0.00 37.81 4.08
542 547 6.175471 TCATTGAGTCACTTAGATGTGCAAT 58.825 36.000 0.00 0.00 37.81 3.56
543 548 7.330262 TCATTGAGTCACTTAGATGTGCAATA 58.670 34.615 0.00 0.00 37.81 1.90
544 549 7.823799 TCATTGAGTCACTTAGATGTGCAATAA 59.176 33.333 0.00 0.00 37.81 1.40
545 550 6.968131 TGAGTCACTTAGATGTGCAATAAC 57.032 37.500 0.00 0.00 37.81 1.89
546 551 6.701340 TGAGTCACTTAGATGTGCAATAACT 58.299 36.000 0.00 0.00 37.81 2.24
547 552 7.836842 TGAGTCACTTAGATGTGCAATAACTA 58.163 34.615 0.00 0.00 37.81 2.24
548 553 7.976175 TGAGTCACTTAGATGTGCAATAACTAG 59.024 37.037 0.00 0.00 37.81 2.57
549 554 8.067751 AGTCACTTAGATGTGCAATAACTAGA 57.932 34.615 0.00 0.00 37.81 2.43
550 555 8.194104 AGTCACTTAGATGTGCAATAACTAGAG 58.806 37.037 0.00 0.00 37.81 2.43
551 556 6.980978 TCACTTAGATGTGCAATAACTAGAGC 59.019 38.462 0.00 0.00 37.81 4.09
552 557 6.758416 CACTTAGATGTGCAATAACTAGAGCA 59.242 38.462 0.00 0.00 34.10 4.26
553 558 7.440556 CACTTAGATGTGCAATAACTAGAGCAT 59.559 37.037 0.00 0.00 39.43 3.79
554 559 7.655328 ACTTAGATGTGCAATAACTAGAGCATC 59.345 37.037 0.00 0.00 39.43 3.91
601 606 6.034044 TCCGAAAGAAAAATCAAAACGTGTTG 59.966 34.615 12.50 12.50 0.00 3.33
611 616 9.667989 AAAATCAAAACGTGTTGGTAATACTAC 57.332 29.630 18.25 0.00 0.00 2.73
612 617 8.611654 AATCAAAACGTGTTGGTAATACTACT 57.388 30.769 18.25 0.00 0.00 2.57
648 653 2.034066 TTGGTGCTGCCCTGCTAC 59.966 61.111 0.00 0.00 36.04 3.58
657 662 2.202851 CCCTGCTACTCTGCTGCG 60.203 66.667 0.00 0.00 0.00 5.18
692 697 2.866156 CGAAACAGTTCTCAGCTTCACA 59.134 45.455 0.00 0.00 0.00 3.58
693 698 3.496130 CGAAACAGTTCTCAGCTTCACAT 59.504 43.478 0.00 0.00 0.00 3.21
694 699 4.686091 CGAAACAGTTCTCAGCTTCACATA 59.314 41.667 0.00 0.00 0.00 2.29
695 700 5.177511 CGAAACAGTTCTCAGCTTCACATAA 59.822 40.000 0.00 0.00 0.00 1.90
696 701 6.128445 CGAAACAGTTCTCAGCTTCACATAAT 60.128 38.462 0.00 0.00 0.00 1.28
697 702 6.734104 AACAGTTCTCAGCTTCACATAATC 57.266 37.500 0.00 0.00 0.00 1.75
698 703 5.798132 ACAGTTCTCAGCTTCACATAATCA 58.202 37.500 0.00 0.00 0.00 2.57
699 704 5.641209 ACAGTTCTCAGCTTCACATAATCAC 59.359 40.000 0.00 0.00 0.00 3.06
716 721 8.627403 ACATAATCACATGTTCAGATGATTTCC 58.373 33.333 11.00 0.00 41.06 3.13
780 786 3.492421 CTGGAAGCAAACGCACATATT 57.508 42.857 0.00 0.00 0.00 1.28
821 827 4.638865 ACAACTGAACCCTAACTGTGTTTC 59.361 41.667 0.00 0.00 0.00 2.78
1016 1022 0.169672 GCAACGTACGTAGCTGAGGA 59.830 55.000 23.12 0.00 0.00 3.71
1030 1036 0.545071 TGAGGACAGCCATGGAGTCA 60.545 55.000 28.27 13.81 36.29 3.41
1774 1783 3.537874 ATGGTCTACGGCCCGCTC 61.538 66.667 1.23 0.00 0.00 5.03
2092 2146 4.002506 AGCATCCGTGACGCCACA 62.003 61.111 1.96 0.00 43.34 4.17
2542 2596 4.692625 ACGTCTGTCTGATCAAGAAAATGG 59.307 41.667 0.00 0.00 36.40 3.16
2598 2652 0.940833 GCTAGAATTTGAGCCGAGCC 59.059 55.000 0.00 0.00 32.25 4.70
2599 2653 1.212616 CTAGAATTTGAGCCGAGCCG 58.787 55.000 0.00 0.00 0.00 5.52
2600 2654 0.821517 TAGAATTTGAGCCGAGCCGA 59.178 50.000 0.00 0.00 0.00 5.54
2601 2655 0.460987 AGAATTTGAGCCGAGCCGAG 60.461 55.000 0.00 0.00 0.00 4.63
2602 2656 2.041366 GAATTTGAGCCGAGCCGAGC 62.041 60.000 0.00 0.00 0.00 5.03
2649 2703 2.031682 CAGCTGGACTTGTGTAACTTGC 60.032 50.000 5.57 0.00 38.04 4.01
2834 2989 3.282021 CAAATCATTCCACCTCGGATGT 58.718 45.455 0.00 0.00 45.80 3.06
2840 2995 4.919653 CACCTCGGATGTGGAGTG 57.080 61.111 5.61 0.00 32.93 3.51
2853 3008 5.123979 GGATGTGGAGTGGTTTCAAATAGAC 59.876 44.000 0.00 0.00 0.00 2.59
2956 3111 4.824289 TGTTTTACATACTCGAACCTCCC 58.176 43.478 0.00 0.00 0.00 4.30
2960 3115 1.762957 ACATACTCGAACCTCCCCATG 59.237 52.381 0.00 0.00 0.00 3.66
2961 3116 1.762957 CATACTCGAACCTCCCCATGT 59.237 52.381 0.00 0.00 0.00 3.21
2966 3121 1.006758 TCGAACCTCCCCATGTAGTCT 59.993 52.381 0.00 0.00 0.00 3.24
2979 3134 5.527582 CCCATGTAGTCTTATTTTTCCTCCG 59.472 44.000 0.00 0.00 0.00 4.63
2985 3140 5.374071 AGTCTTATTTTTCCTCCGTGTTGT 58.626 37.500 0.00 0.00 0.00 3.32
2989 3144 6.488683 TCTTATTTTTCCTCCGTGTTGTCAAT 59.511 34.615 0.00 0.00 0.00 2.57
2996 3151 3.325870 CTCCGTGTTGTCAATGAGCTAA 58.674 45.455 0.00 0.00 0.00 3.09
2997 3152 3.734463 TCCGTGTTGTCAATGAGCTAAA 58.266 40.909 0.00 0.00 0.00 1.85
2998 3153 4.130857 TCCGTGTTGTCAATGAGCTAAAA 58.869 39.130 0.00 0.00 0.00 1.52
2999 3154 4.213270 TCCGTGTTGTCAATGAGCTAAAAG 59.787 41.667 0.00 0.00 0.00 2.27
3000 3155 4.213270 CCGTGTTGTCAATGAGCTAAAAGA 59.787 41.667 0.00 0.00 0.00 2.52
3001 3156 5.106555 CCGTGTTGTCAATGAGCTAAAAGAT 60.107 40.000 0.00 0.00 0.00 2.40
3002 3157 6.017933 CGTGTTGTCAATGAGCTAAAAGATC 58.982 40.000 0.00 0.00 0.00 2.75
3003 3158 6.017933 GTGTTGTCAATGAGCTAAAAGATCG 58.982 40.000 0.00 0.00 32.29 3.69
3004 3159 4.864916 TGTCAATGAGCTAAAAGATCGC 57.135 40.909 0.00 0.00 32.29 4.58
3005 3160 4.252878 TGTCAATGAGCTAAAAGATCGCA 58.747 39.130 0.00 0.00 32.29 5.10
3006 3161 4.694982 TGTCAATGAGCTAAAAGATCGCAA 59.305 37.500 0.00 0.00 32.29 4.85
3007 3162 5.181056 TGTCAATGAGCTAAAAGATCGCAAA 59.819 36.000 0.00 0.00 32.29 3.68
3008 3163 5.509622 GTCAATGAGCTAAAAGATCGCAAAC 59.490 40.000 0.00 0.00 32.29 2.93
3009 3164 5.412594 TCAATGAGCTAAAAGATCGCAAACT 59.587 36.000 0.00 0.00 32.29 2.66
3010 3165 4.928661 TGAGCTAAAAGATCGCAAACTC 57.071 40.909 0.00 0.00 32.29 3.01
3011 3166 4.569943 TGAGCTAAAAGATCGCAAACTCT 58.430 39.130 0.00 0.00 32.29 3.24
3012 3167 4.997395 TGAGCTAAAAGATCGCAAACTCTT 59.003 37.500 0.00 0.00 32.29 2.85
3013 3168 5.120830 TGAGCTAAAAGATCGCAAACTCTTC 59.879 40.000 0.00 0.00 32.29 2.87
3014 3169 5.241662 AGCTAAAAGATCGCAAACTCTTCT 58.758 37.500 0.00 0.00 31.45 2.85
3015 3170 5.703130 AGCTAAAAGATCGCAAACTCTTCTT 59.297 36.000 0.00 0.00 31.45 2.52
3016 3171 6.205658 AGCTAAAAGATCGCAAACTCTTCTTT 59.794 34.615 0.00 0.00 38.04 2.52
3017 3172 6.304208 GCTAAAAGATCGCAAACTCTTCTTTG 59.696 38.462 0.00 0.00 36.89 2.77
3018 3173 4.756084 AAGATCGCAAACTCTTCTTTGG 57.244 40.909 0.00 0.00 32.59 3.28
3019 3174 4.008074 AGATCGCAAACTCTTCTTTGGA 57.992 40.909 0.00 0.00 32.59 3.53
3020 3175 4.583871 AGATCGCAAACTCTTCTTTGGAT 58.416 39.130 0.00 0.00 32.59 3.41
3021 3176 5.006386 AGATCGCAAACTCTTCTTTGGATT 58.994 37.500 0.00 0.00 32.59 3.01
3022 3177 6.173339 AGATCGCAAACTCTTCTTTGGATTA 58.827 36.000 0.00 0.00 32.59 1.75
3023 3178 6.655003 AGATCGCAAACTCTTCTTTGGATTAA 59.345 34.615 0.00 0.00 32.59 1.40
3024 3179 6.241207 TCGCAAACTCTTCTTTGGATTAAG 57.759 37.500 0.00 0.00 32.59 1.85
3025 3180 5.181245 TCGCAAACTCTTCTTTGGATTAAGG 59.819 40.000 0.00 0.00 32.59 2.69
3026 3181 5.048713 CGCAAACTCTTCTTTGGATTAAGGT 60.049 40.000 0.00 0.00 32.59 3.50
3027 3182 6.152379 GCAAACTCTTCTTTGGATTAAGGTG 58.848 40.000 0.00 0.00 32.59 4.00
3028 3183 6.681777 CAAACTCTTCTTTGGATTAAGGTGG 58.318 40.000 0.00 0.00 0.00 4.61
3029 3184 5.584551 ACTCTTCTTTGGATTAAGGTGGT 57.415 39.130 0.00 0.00 0.00 4.16
3030 3185 6.697641 ACTCTTCTTTGGATTAAGGTGGTA 57.302 37.500 0.00 0.00 0.00 3.25
3031 3186 6.712276 ACTCTTCTTTGGATTAAGGTGGTAG 58.288 40.000 0.00 0.00 0.00 3.18
3032 3187 5.497474 TCTTCTTTGGATTAAGGTGGTAGC 58.503 41.667 0.00 0.00 0.00 3.58
3033 3188 5.250774 TCTTCTTTGGATTAAGGTGGTAGCT 59.749 40.000 0.00 0.00 0.00 3.32
3034 3189 4.843728 TCTTTGGATTAAGGTGGTAGCTG 58.156 43.478 0.00 0.00 0.00 4.24
3035 3190 4.288626 TCTTTGGATTAAGGTGGTAGCTGT 59.711 41.667 0.00 0.00 0.00 4.40
3036 3191 5.486063 TCTTTGGATTAAGGTGGTAGCTGTA 59.514 40.000 0.00 0.00 0.00 2.74
3037 3192 5.765576 TTGGATTAAGGTGGTAGCTGTAA 57.234 39.130 0.00 0.00 0.00 2.41
3038 3193 5.353394 TGGATTAAGGTGGTAGCTGTAAG 57.647 43.478 0.00 0.00 0.00 2.34
3039 3194 4.781087 TGGATTAAGGTGGTAGCTGTAAGT 59.219 41.667 0.00 0.00 35.30 2.24
3040 3195 5.959594 TGGATTAAGGTGGTAGCTGTAAGTA 59.040 40.000 0.00 0.00 35.30 2.24
3041 3196 6.441284 TGGATTAAGGTGGTAGCTGTAAGTAA 59.559 38.462 0.00 0.00 35.30 2.24
3042 3197 6.760298 GGATTAAGGTGGTAGCTGTAAGTAAC 59.240 42.308 0.00 0.00 35.30 2.50
3043 3198 4.548451 AAGGTGGTAGCTGTAAGTAACC 57.452 45.455 0.00 0.00 40.10 2.85
3044 3199 3.513517 AGGTGGTAGCTGTAAGTAACCA 58.486 45.455 0.00 0.00 44.81 3.67
3047 3202 4.380841 TGGTAGCTGTAAGTAACCATCG 57.619 45.455 0.00 0.00 43.05 3.84
3048 3203 4.018490 TGGTAGCTGTAAGTAACCATCGA 58.982 43.478 0.00 0.00 43.05 3.59
3049 3204 4.142315 TGGTAGCTGTAAGTAACCATCGAC 60.142 45.833 0.00 0.00 43.05 4.20
3050 3205 4.097589 GGTAGCTGTAAGTAACCATCGACT 59.902 45.833 0.00 0.00 39.65 4.18
3051 3206 5.297776 GGTAGCTGTAAGTAACCATCGACTA 59.702 44.000 0.00 0.00 39.65 2.59
3052 3207 6.016443 GGTAGCTGTAAGTAACCATCGACTAT 60.016 42.308 0.00 0.00 39.65 2.12
3053 3208 6.466885 AGCTGTAAGTAACCATCGACTATT 57.533 37.500 0.00 0.00 35.30 1.73
3054 3209 6.875076 AGCTGTAAGTAACCATCGACTATTT 58.125 36.000 0.00 0.00 35.30 1.40
3055 3210 6.757010 AGCTGTAAGTAACCATCGACTATTTG 59.243 38.462 0.00 0.00 35.30 2.32
3056 3211 6.018994 GCTGTAAGTAACCATCGACTATTTGG 60.019 42.308 0.36 0.36 35.30 3.28
3057 3212 7.172868 TGTAAGTAACCATCGACTATTTGGA 57.827 36.000 8.96 0.00 34.52 3.53
3058 3213 7.613585 TGTAAGTAACCATCGACTATTTGGAA 58.386 34.615 8.96 0.00 34.52 3.53
3059 3214 8.095792 TGTAAGTAACCATCGACTATTTGGAAA 58.904 33.333 8.96 0.00 34.52 3.13
3060 3215 9.106070 GTAAGTAACCATCGACTATTTGGAAAT 57.894 33.333 8.96 0.00 34.52 2.17
3061 3216 7.553881 AGTAACCATCGACTATTTGGAAATG 57.446 36.000 8.96 0.00 34.52 2.32
3062 3217 7.335627 AGTAACCATCGACTATTTGGAAATGA 58.664 34.615 8.96 0.00 34.52 2.57
3063 3218 7.993183 AGTAACCATCGACTATTTGGAAATGAT 59.007 33.333 8.96 0.00 34.52 2.45
3064 3219 6.624352 ACCATCGACTATTTGGAAATGATG 57.376 37.500 8.96 0.00 34.52 3.07
3065 3220 5.009010 ACCATCGACTATTTGGAAATGATGC 59.991 40.000 8.96 0.00 34.52 3.91
3066 3221 5.008911 CCATCGACTATTTGGAAATGATGCA 59.991 40.000 0.00 0.00 30.13 3.96
3067 3222 5.484173 TCGACTATTTGGAAATGATGCAC 57.516 39.130 0.00 0.00 0.00 4.57
3068 3223 5.185454 TCGACTATTTGGAAATGATGCACT 58.815 37.500 0.00 0.00 0.00 4.40
3069 3224 5.065090 TCGACTATTTGGAAATGATGCACTG 59.935 40.000 0.00 0.00 0.00 3.66
3070 3225 5.002464 ACTATTTGGAAATGATGCACTGC 57.998 39.130 0.00 0.00 0.00 4.40
3071 3226 3.965379 ATTTGGAAATGATGCACTGCA 57.035 38.095 6.09 6.09 44.86 4.41
3072 3227 2.728690 TTGGAAATGATGCACTGCAC 57.271 45.000 5.67 1.38 43.04 4.57
3073 3228 1.618487 TGGAAATGATGCACTGCACA 58.382 45.000 5.67 7.26 43.04 4.57
3074 3229 1.962100 TGGAAATGATGCACTGCACAA 59.038 42.857 5.67 0.00 43.04 3.33
3075 3230 2.288334 TGGAAATGATGCACTGCACAAC 60.288 45.455 5.67 2.00 43.04 3.32
3076 3231 2.029649 GGAAATGATGCACTGCACAACT 60.030 45.455 5.67 0.00 43.04 3.16
3077 3232 2.717580 AATGATGCACTGCACAACTG 57.282 45.000 5.67 0.00 43.04 3.16
3078 3233 1.900245 ATGATGCACTGCACAACTGA 58.100 45.000 5.67 0.00 43.04 3.41
3079 3234 0.946528 TGATGCACTGCACAACTGAC 59.053 50.000 5.67 0.00 43.04 3.51
3080 3235 0.946528 GATGCACTGCACAACTGACA 59.053 50.000 5.67 0.00 43.04 3.58
3081 3236 1.334556 GATGCACTGCACAACTGACAA 59.665 47.619 5.67 0.00 43.04 3.18
3082 3237 0.451383 TGCACTGCACAACTGACAAC 59.549 50.000 0.00 0.00 31.71 3.32
3083 3238 0.451383 GCACTGCACAACTGACAACA 59.549 50.000 0.00 0.00 0.00 3.33
3084 3239 1.135431 GCACTGCACAACTGACAACAA 60.135 47.619 0.00 0.00 0.00 2.83
3085 3240 2.480073 GCACTGCACAACTGACAACAAT 60.480 45.455 0.00 0.00 0.00 2.71
3086 3241 3.365832 CACTGCACAACTGACAACAATC 58.634 45.455 0.00 0.00 0.00 2.67
3087 3242 3.016031 ACTGCACAACTGACAACAATCA 58.984 40.909 0.00 0.00 0.00 2.57
3088 3243 3.443329 ACTGCACAACTGACAACAATCAA 59.557 39.130 0.00 0.00 0.00 2.57
3089 3244 3.768406 TGCACAACTGACAACAATCAAC 58.232 40.909 0.00 0.00 0.00 3.18
3090 3245 3.192212 TGCACAACTGACAACAATCAACA 59.808 39.130 0.00 0.00 0.00 3.33
3091 3246 4.172505 GCACAACTGACAACAATCAACAA 58.827 39.130 0.00 0.00 0.00 2.83
3092 3247 4.031652 GCACAACTGACAACAATCAACAAC 59.968 41.667 0.00 0.00 0.00 3.32
3093 3248 5.159925 CACAACTGACAACAATCAACAACA 58.840 37.500 0.00 0.00 0.00 3.33
3094 3249 5.286797 CACAACTGACAACAATCAACAACAG 59.713 40.000 0.00 0.00 0.00 3.16
3095 3250 5.048083 ACAACTGACAACAATCAACAACAGT 60.048 36.000 0.00 0.00 38.67 3.55
3096 3251 6.150307 ACAACTGACAACAATCAACAACAGTA 59.850 34.615 0.00 0.00 36.55 2.74
3097 3252 6.942532 ACTGACAACAATCAACAACAGTAT 57.057 33.333 0.00 0.00 35.95 2.12
3098 3253 7.333528 ACTGACAACAATCAACAACAGTATT 57.666 32.000 0.00 0.00 35.95 1.89
3099 3254 7.195646 ACTGACAACAATCAACAACAGTATTG 58.804 34.615 0.00 0.00 35.95 1.90
3100 3255 6.502652 TGACAACAATCAACAACAGTATTGG 58.497 36.000 0.00 0.00 34.38 3.16
3101 3256 6.096141 TGACAACAATCAACAACAGTATTGGT 59.904 34.615 0.00 0.00 34.38 3.67
3102 3257 7.283354 TGACAACAATCAACAACAGTATTGGTA 59.717 33.333 0.00 0.00 34.38 3.25
3103 3258 8.177119 ACAACAATCAACAACAGTATTGGTAT 57.823 30.769 0.00 0.00 34.38 2.73
3104 3259 8.637986 ACAACAATCAACAACAGTATTGGTATT 58.362 29.630 0.00 0.00 34.38 1.89
3105 3260 9.474920 CAACAATCAACAACAGTATTGGTATTT 57.525 29.630 0.00 0.00 34.38 1.40
3106 3261 9.474920 AACAATCAACAACAGTATTGGTATTTG 57.525 29.630 0.00 0.00 34.38 2.32
3107 3262 8.637986 ACAATCAACAACAGTATTGGTATTTGT 58.362 29.630 0.00 0.00 34.38 2.83
3108 3263 9.128107 CAATCAACAACAGTATTGGTATTTGTC 57.872 33.333 0.00 0.00 0.00 3.18
3109 3264 6.893759 TCAACAACAGTATTGGTATTTGTCG 58.106 36.000 0.00 0.00 0.00 4.35
3110 3265 5.291293 ACAACAGTATTGGTATTTGTCGC 57.709 39.130 0.00 0.00 0.00 5.19
3111 3266 4.757657 ACAACAGTATTGGTATTTGTCGCA 59.242 37.500 0.00 0.00 0.00 5.10
3112 3267 5.414454 ACAACAGTATTGGTATTTGTCGCAT 59.586 36.000 0.00 0.00 0.00 4.73
3113 3268 5.484173 ACAGTATTGGTATTTGTCGCATG 57.516 39.130 0.00 0.00 0.00 4.06
3114 3269 4.941263 ACAGTATTGGTATTTGTCGCATGT 59.059 37.500 0.00 0.00 0.00 3.21
3115 3270 6.110033 ACAGTATTGGTATTTGTCGCATGTA 58.890 36.000 0.00 0.00 0.00 2.29
3116 3271 6.036735 ACAGTATTGGTATTTGTCGCATGTAC 59.963 38.462 0.00 0.00 0.00 2.90
3117 3272 6.036626 CAGTATTGGTATTTGTCGCATGTACA 59.963 38.462 0.00 0.00 0.00 2.90
3118 3273 6.765989 AGTATTGGTATTTGTCGCATGTACAT 59.234 34.615 1.41 1.41 0.00 2.29
3119 3274 5.888691 TTGGTATTTGTCGCATGTACATT 57.111 34.783 5.37 0.00 0.00 2.71
3120 3275 6.986904 TTGGTATTTGTCGCATGTACATTA 57.013 33.333 5.37 0.00 0.00 1.90
3121 3276 7.561021 TTGGTATTTGTCGCATGTACATTAT 57.439 32.000 5.37 4.60 0.00 1.28
3122 3277 6.953843 TGGTATTTGTCGCATGTACATTATG 58.046 36.000 5.37 0.00 0.00 1.90
3123 3278 6.763610 TGGTATTTGTCGCATGTACATTATGA 59.236 34.615 5.37 1.43 0.00 2.15
3124 3279 7.042119 TGGTATTTGTCGCATGTACATTATGAG 60.042 37.037 5.37 0.00 0.00 2.90
3125 3280 6.925610 ATTTGTCGCATGTACATTATGAGT 57.074 33.333 5.37 0.00 0.00 3.41
3126 3281 8.974408 GTATTTGTCGCATGTACATTATGAGTA 58.026 33.333 5.37 0.00 0.00 2.59
3127 3282 6.822073 TTGTCGCATGTACATTATGAGTAC 57.178 37.500 5.37 0.00 41.63 2.73
3128 3283 5.286438 TGTCGCATGTACATTATGAGTACC 58.714 41.667 5.37 0.00 40.79 3.34
3129 3284 4.381863 GTCGCATGTACATTATGAGTACCG 59.618 45.833 5.37 0.00 40.79 4.02
3130 3285 4.276431 TCGCATGTACATTATGAGTACCGA 59.724 41.667 5.37 0.00 40.79 4.69
3131 3286 4.617223 CGCATGTACATTATGAGTACCGAG 59.383 45.833 5.37 0.00 40.79 4.63
3132 3287 5.562113 CGCATGTACATTATGAGTACCGAGA 60.562 44.000 5.37 0.00 40.79 4.04
3133 3288 6.390721 GCATGTACATTATGAGTACCGAGAT 58.609 40.000 5.37 0.00 40.79 2.75
3134 3289 6.868864 GCATGTACATTATGAGTACCGAGATT 59.131 38.462 5.37 0.00 40.79 2.40
3135 3290 8.027189 GCATGTACATTATGAGTACCGAGATTA 58.973 37.037 5.37 0.00 40.79 1.75
3136 3291 9.908152 CATGTACATTATGAGTACCGAGATTAA 57.092 33.333 5.37 0.00 40.79 1.40
3174 3329 3.714487 ATGGGGCGATCCAAACGGG 62.714 63.158 1.33 0.00 40.62 5.28
3198 3353 1.850441 CGATTTCGTCCGCTATTCGTT 59.150 47.619 0.00 0.00 33.49 3.85
3215 3371 3.753806 TTCGTTTGGGTCGGCCGTT 62.754 57.895 27.15 0.00 34.97 4.44
3543 3795 3.692101 TGGATGAACTGTTCAAACGTTGT 59.308 39.130 25.26 8.64 43.95 3.32
3602 3856 4.345859 ACTGAAACCCTTGATCGTACAA 57.654 40.909 0.00 0.00 0.00 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.057104 TGTCTAAATCGCCGACTTTCTGA 60.057 43.478 0.00 0.00 0.00 3.27
1 2 3.250744 TGTCTAAATCGCCGACTTTCTG 58.749 45.455 0.00 0.00 0.00 3.02
3 4 4.657075 TTTGTCTAAATCGCCGACTTTC 57.343 40.909 0.00 0.00 0.00 2.62
4 5 5.427036 TTTTTGTCTAAATCGCCGACTTT 57.573 34.783 0.00 0.00 0.00 2.66
40 42 1.402968 CGGGAAGGCAATCAGTTCATG 59.597 52.381 0.00 0.00 0.00 3.07
43 45 2.482326 CCGGGAAGGCAATCAGTTC 58.518 57.895 0.00 0.00 0.00 3.01
62 64 2.802667 CTTCTCGGTGCCGCATTCG 61.803 63.158 5.64 11.34 39.59 3.34
65 67 4.473520 CCCTTCTCGGTGCCGCAT 62.474 66.667 5.64 0.00 39.59 4.73
86 88 3.061848 CGCGATGGGGTTGCCTTT 61.062 61.111 0.00 0.00 33.31 3.11
107 110 1.409790 CAGAGGCCTCTCATCTGTCTG 59.590 57.143 33.06 15.11 45.68 3.51
113 116 1.781786 TGTACCAGAGGCCTCTCATC 58.218 55.000 33.06 21.34 42.34 2.92
127 130 9.209175 TGGCAAATATTTTGTTTAACATGTACC 57.791 29.630 0.00 0.00 0.00 3.34
175 178 4.987912 TGCGAACAAAATTCAATCTTTCCC 59.012 37.500 0.00 0.00 0.00 3.97
189 192 6.702723 GGTATACCACTATGTATGCGAACAAA 59.297 38.462 17.44 0.00 35.43 2.83
196 199 6.818644 CCAATCTGGTATACCACTATGTATGC 59.181 42.308 21.05 0.00 42.01 3.14
205 208 5.031066 TGTAAGCCAATCTGGTATACCAC 57.969 43.478 21.05 9.98 42.01 4.16
206 209 5.702065 TTGTAAGCCAATCTGGTATACCA 57.298 39.130 23.23 23.23 45.30 3.25
215 220 4.535781 TGCCATGTATTGTAAGCCAATCT 58.464 39.130 0.00 0.00 42.81 2.40
218 223 6.153510 TGTTATTGCCATGTATTGTAAGCCAA 59.846 34.615 0.00 0.00 37.49 4.52
248 253 8.041919 TGTTGTAACCGATTTGATAAGATGGTA 58.958 33.333 0.00 0.00 0.00 3.25
249 254 6.882140 TGTTGTAACCGATTTGATAAGATGGT 59.118 34.615 0.00 0.00 0.00 3.55
250 255 7.315247 TGTTGTAACCGATTTGATAAGATGG 57.685 36.000 0.00 0.00 0.00 3.51
251 256 8.611757 TGATGTTGTAACCGATTTGATAAGATG 58.388 33.333 0.00 0.00 0.00 2.90
275 280 4.227073 TCATGGTTGGTTCATAGGTCATGA 59.773 41.667 0.00 0.00 42.07 3.07
365 370 1.835531 TGATCTTCTGCAGGCTCATGA 59.164 47.619 15.13 2.49 0.00 3.07
402 407 5.240891 TGGCACATCTAGATATGCTTTAGC 58.759 41.667 29.70 16.46 40.81 3.09
421 426 6.356556 ACTTAGATGTGCAATACTTATGGCA 58.643 36.000 0.00 0.00 40.19 4.92
422 427 6.483307 TGACTTAGATGTGCAATACTTATGGC 59.517 38.462 0.00 0.00 33.16 4.40
423 428 8.613060 ATGACTTAGATGTGCAATACTTATGG 57.387 34.615 0.00 0.00 0.00 2.74
426 431 9.208022 GCATATGACTTAGATGTGCAATACTTA 57.792 33.333 6.97 0.00 37.74 2.24
427 432 7.173907 GGCATATGACTTAGATGTGCAATACTT 59.826 37.037 6.97 0.00 39.11 2.24
428 433 6.652481 GGCATATGACTTAGATGTGCAATACT 59.348 38.462 6.97 0.00 39.11 2.12
429 434 6.427853 TGGCATATGACTTAGATGTGCAATAC 59.572 38.462 10.60 0.00 39.11 1.89
430 435 6.532826 TGGCATATGACTTAGATGTGCAATA 58.467 36.000 10.60 0.00 39.11 1.90
431 436 5.379187 TGGCATATGACTTAGATGTGCAAT 58.621 37.500 10.60 0.00 39.11 3.56
432 437 4.779696 TGGCATATGACTTAGATGTGCAA 58.220 39.130 10.60 0.00 39.11 4.08
433 438 4.420522 TGGCATATGACTTAGATGTGCA 57.579 40.909 10.60 0.00 39.11 4.57
434 439 5.471116 TCATTGGCATATGACTTAGATGTGC 59.529 40.000 10.60 0.00 37.25 4.57
435 440 7.683437 ATCATTGGCATATGACTTAGATGTG 57.317 36.000 10.60 0.00 37.36 3.21
436 441 8.701908 AAATCATTGGCATATGACTTAGATGT 57.298 30.769 10.60 2.63 37.36 3.06
439 444 8.773645 CGTAAAATCATTGGCATATGACTTAGA 58.226 33.333 10.60 5.04 37.36 2.10
440 445 8.559536 ACGTAAAATCATTGGCATATGACTTAG 58.440 33.333 10.60 0.00 37.36 2.18
441 446 8.341903 CACGTAAAATCATTGGCATATGACTTA 58.658 33.333 10.60 0.00 37.36 2.24
442 447 7.066887 TCACGTAAAATCATTGGCATATGACTT 59.933 33.333 10.60 7.28 37.36 3.01
443 448 6.542005 TCACGTAAAATCATTGGCATATGACT 59.458 34.615 10.60 2.29 37.36 3.41
444 449 6.724263 TCACGTAAAATCATTGGCATATGAC 58.276 36.000 6.97 3.57 37.36 3.06
445 450 6.934048 TCACGTAAAATCATTGGCATATGA 57.066 33.333 6.97 12.51 38.78 2.15
446 451 7.416817 TCTTCACGTAAAATCATTGGCATATG 58.583 34.615 0.00 0.00 0.00 1.78
447 452 7.566760 TCTTCACGTAAAATCATTGGCATAT 57.433 32.000 0.00 0.00 0.00 1.78
448 453 6.993786 TCTTCACGTAAAATCATTGGCATA 57.006 33.333 0.00 0.00 0.00 3.14
449 454 5.895636 TCTTCACGTAAAATCATTGGCAT 57.104 34.783 0.00 0.00 0.00 4.40
450 455 5.895636 ATCTTCACGTAAAATCATTGGCA 57.104 34.783 0.00 0.00 0.00 4.92
451 456 5.452302 CGAATCTTCACGTAAAATCATTGGC 59.548 40.000 0.00 0.00 0.00 4.52
452 457 6.465781 CACGAATCTTCACGTAAAATCATTGG 59.534 38.462 0.00 0.00 40.76 3.16
453 458 6.022251 GCACGAATCTTCACGTAAAATCATTG 60.022 38.462 0.00 0.00 40.76 2.82
454 459 6.021596 GCACGAATCTTCACGTAAAATCATT 58.978 36.000 0.00 0.00 40.76 2.57
455 460 5.121611 TGCACGAATCTTCACGTAAAATCAT 59.878 36.000 0.00 0.00 40.76 2.45
456 461 4.449405 TGCACGAATCTTCACGTAAAATCA 59.551 37.500 0.00 0.00 40.76 2.57
457 462 4.953269 TGCACGAATCTTCACGTAAAATC 58.047 39.130 0.00 0.00 40.76 2.17
458 463 5.144359 GTTGCACGAATCTTCACGTAAAAT 58.856 37.500 0.00 0.00 40.76 1.82
459 464 4.520078 GTTGCACGAATCTTCACGTAAAA 58.480 39.130 0.00 0.00 40.76 1.52
460 465 3.059461 GGTTGCACGAATCTTCACGTAAA 60.059 43.478 0.00 0.00 40.76 2.01
461 466 2.477375 GGTTGCACGAATCTTCACGTAA 59.523 45.455 0.00 0.00 40.76 3.18
462 467 2.063266 GGTTGCACGAATCTTCACGTA 58.937 47.619 0.00 0.00 40.76 3.57
463 468 0.865769 GGTTGCACGAATCTTCACGT 59.134 50.000 0.00 0.00 43.50 4.49
464 469 0.865111 TGGTTGCACGAATCTTCACG 59.135 50.000 0.00 0.00 0.00 4.35
465 470 3.559238 AATGGTTGCACGAATCTTCAC 57.441 42.857 0.00 0.00 0.00 3.18
466 471 4.545610 GAAAATGGTTGCACGAATCTTCA 58.454 39.130 0.00 0.00 0.00 3.02
467 472 3.603770 CGAAAATGGTTGCACGAATCTTC 59.396 43.478 0.00 0.00 0.00 2.87
468 473 3.564511 CGAAAATGGTTGCACGAATCTT 58.435 40.909 0.00 0.00 0.00 2.40
469 474 2.668279 GCGAAAATGGTTGCACGAATCT 60.668 45.455 0.00 0.00 0.00 2.40
470 475 1.648681 GCGAAAATGGTTGCACGAATC 59.351 47.619 0.00 0.00 0.00 2.52
471 476 1.269448 AGCGAAAATGGTTGCACGAAT 59.731 42.857 0.00 0.00 0.00 3.34
472 477 0.665835 AGCGAAAATGGTTGCACGAA 59.334 45.000 0.00 0.00 0.00 3.85
473 478 1.463056 CTAGCGAAAATGGTTGCACGA 59.537 47.619 0.00 0.00 0.00 4.35
474 479 1.196808 ACTAGCGAAAATGGTTGCACG 59.803 47.619 0.00 0.00 0.00 5.34
475 480 2.484264 AGACTAGCGAAAATGGTTGCAC 59.516 45.455 0.00 0.00 0.00 4.57
476 481 2.778299 AGACTAGCGAAAATGGTTGCA 58.222 42.857 0.00 0.00 0.00 4.08
477 482 3.831715 AAGACTAGCGAAAATGGTTGC 57.168 42.857 0.00 0.00 0.00 4.17
511 516 9.778741 ACATCTAAGTGACTCAATGAAACTAAA 57.221 29.630 8.27 0.00 0.00 1.85
512 517 9.208022 CACATCTAAGTGACTCAATGAAACTAA 57.792 33.333 8.27 0.00 42.05 2.24
513 518 7.331934 GCACATCTAAGTGACTCAATGAAACTA 59.668 37.037 8.27 0.00 42.05 2.24
514 519 6.148480 GCACATCTAAGTGACTCAATGAAACT 59.852 38.462 8.27 0.00 42.05 2.66
515 520 6.073058 TGCACATCTAAGTGACTCAATGAAAC 60.073 38.462 8.27 0.00 42.05 2.78
516 521 5.997129 TGCACATCTAAGTGACTCAATGAAA 59.003 36.000 8.27 0.00 42.05 2.69
517 522 5.550290 TGCACATCTAAGTGACTCAATGAA 58.450 37.500 8.27 0.00 42.05 2.57
518 523 5.151297 TGCACATCTAAGTGACTCAATGA 57.849 39.130 8.27 0.00 42.05 2.57
519 524 5.868043 TTGCACATCTAAGTGACTCAATG 57.132 39.130 0.00 0.00 42.05 2.82
520 525 7.826252 AGTTATTGCACATCTAAGTGACTCAAT 59.174 33.333 0.00 0.00 42.05 2.57
521 526 7.161404 AGTTATTGCACATCTAAGTGACTCAA 58.839 34.615 0.00 0.00 42.05 3.02
522 527 6.701340 AGTTATTGCACATCTAAGTGACTCA 58.299 36.000 0.00 0.00 42.05 3.41
523 528 8.191446 TCTAGTTATTGCACATCTAAGTGACTC 58.809 37.037 0.00 0.00 42.05 3.36
524 529 8.067751 TCTAGTTATTGCACATCTAAGTGACT 57.932 34.615 0.00 0.00 42.05 3.41
525 530 7.043059 GCTCTAGTTATTGCACATCTAAGTGAC 60.043 40.741 0.00 0.00 42.05 3.67
526 531 6.980978 GCTCTAGTTATTGCACATCTAAGTGA 59.019 38.462 0.00 0.00 42.05 3.41
527 532 6.758416 TGCTCTAGTTATTGCACATCTAAGTG 59.242 38.462 0.00 0.00 42.37 3.16
528 533 6.878317 TGCTCTAGTTATTGCACATCTAAGT 58.122 36.000 0.00 0.00 0.00 2.24
529 534 7.871973 AGATGCTCTAGTTATTGCACATCTAAG 59.128 37.037 7.20 0.00 40.75 2.18
530 535 7.730084 AGATGCTCTAGTTATTGCACATCTAA 58.270 34.615 7.20 0.00 40.75 2.10
531 536 7.232330 AGAGATGCTCTAGTTATTGCACATCTA 59.768 37.037 8.56 0.00 42.14 1.98
532 537 6.041865 AGAGATGCTCTAGTTATTGCACATCT 59.958 38.462 8.38 8.38 44.11 2.90
533 538 6.222389 AGAGATGCTCTAGTTATTGCACATC 58.778 40.000 0.00 0.00 39.28 3.06
534 539 6.172136 AGAGATGCTCTAGTTATTGCACAT 57.828 37.500 0.00 0.00 39.28 3.21
535 540 5.604758 AGAGATGCTCTAGTTATTGCACA 57.395 39.130 0.00 0.00 39.28 4.57
563 568 3.427573 TCTTTCGGATGTGTCTAGGACA 58.572 45.455 0.00 0.00 40.50 4.02
564 569 4.451629 TTCTTTCGGATGTGTCTAGGAC 57.548 45.455 0.00 0.00 0.00 3.85
565 570 5.477607 TTTTCTTTCGGATGTGTCTAGGA 57.522 39.130 0.00 0.00 0.00 2.94
566 571 6.371548 TGATTTTTCTTTCGGATGTGTCTAGG 59.628 38.462 0.00 0.00 0.00 3.02
567 572 7.364522 TGATTTTTCTTTCGGATGTGTCTAG 57.635 36.000 0.00 0.00 0.00 2.43
568 573 7.737972 TTGATTTTTCTTTCGGATGTGTCTA 57.262 32.000 0.00 0.00 0.00 2.59
569 574 6.633500 TTGATTTTTCTTTCGGATGTGTCT 57.367 33.333 0.00 0.00 0.00 3.41
570 575 7.555582 GTTTTGATTTTTCTTTCGGATGTGTC 58.444 34.615 0.00 0.00 0.00 3.67
571 576 6.198216 CGTTTTGATTTTTCTTTCGGATGTGT 59.802 34.615 0.00 0.00 0.00 3.72
572 577 6.198216 ACGTTTTGATTTTTCTTTCGGATGTG 59.802 34.615 0.00 0.00 0.00 3.21
573 578 6.198216 CACGTTTTGATTTTTCTTTCGGATGT 59.802 34.615 0.00 0.00 0.00 3.06
574 579 6.198216 ACACGTTTTGATTTTTCTTTCGGATG 59.802 34.615 0.00 0.00 0.00 3.51
575 580 6.270064 ACACGTTTTGATTTTTCTTTCGGAT 58.730 32.000 0.00 0.00 0.00 4.18
576 581 5.642686 ACACGTTTTGATTTTTCTTTCGGA 58.357 33.333 0.00 0.00 0.00 4.55
577 582 5.942325 ACACGTTTTGATTTTTCTTTCGG 57.058 34.783 0.00 0.00 0.00 4.30
578 583 6.175087 CCAACACGTTTTGATTTTTCTTTCG 58.825 36.000 15.82 0.00 0.00 3.46
579 584 7.056002 ACCAACACGTTTTGATTTTTCTTTC 57.944 32.000 15.82 0.00 0.00 2.62
580 585 8.535690 TTACCAACACGTTTTGATTTTTCTTT 57.464 26.923 15.82 0.00 0.00 2.52
581 586 8.710835 ATTACCAACACGTTTTGATTTTTCTT 57.289 26.923 15.82 0.00 0.00 2.52
601 606 6.616774 AAGCAGAGTACGAGTAGTATTACC 57.383 41.667 0.00 0.00 37.69 2.85
610 615 1.068472 CGGACAAAGCAGAGTACGAGT 60.068 52.381 1.36 0.00 44.61 4.18
611 616 1.068472 ACGGACAAAGCAGAGTACGAG 60.068 52.381 12.96 0.00 44.61 4.18
612 617 0.956633 ACGGACAAAGCAGAGTACGA 59.043 50.000 12.96 0.00 44.61 3.43
657 662 3.746492 ACTGTTTCGAGTTGGTGAATAGC 59.254 43.478 0.00 0.00 0.00 2.97
692 697 7.040892 CCGGAAATCATCTGAACATGTGATTAT 60.041 37.037 0.00 0.00 39.61 1.28
693 698 6.260714 CCGGAAATCATCTGAACATGTGATTA 59.739 38.462 0.00 0.00 39.61 1.75
694 699 5.066893 CCGGAAATCATCTGAACATGTGATT 59.933 40.000 0.00 0.00 41.60 2.57
695 700 4.577693 CCGGAAATCATCTGAACATGTGAT 59.422 41.667 0.00 0.00 36.44 3.06
696 701 3.940852 CCGGAAATCATCTGAACATGTGA 59.059 43.478 0.00 0.00 36.44 3.58
697 702 3.940852 TCCGGAAATCATCTGAACATGTG 59.059 43.478 0.00 0.00 36.44 3.21
698 703 4.194640 CTCCGGAAATCATCTGAACATGT 58.805 43.478 5.23 0.00 36.44 3.21
699 704 3.003068 GCTCCGGAAATCATCTGAACATG 59.997 47.826 5.23 0.00 36.44 3.21
716 721 0.608035 TACCCCTGCTTTTTGCTCCG 60.608 55.000 0.00 0.00 43.37 4.63
730 736 2.897326 ACAGGACTTTGCAAATTACCCC 59.103 45.455 13.23 9.39 0.00 4.95
775 781 3.000925 GGCGTACGGTGACAAGAAATATG 59.999 47.826 18.39 0.00 0.00 1.78
780 786 0.598158 GTGGCGTACGGTGACAAGAA 60.598 55.000 18.39 0.00 0.00 2.52
821 827 4.489771 GATGGACCCAGCCCACGG 62.490 72.222 0.00 0.00 36.36 4.94
1016 1022 0.837691 TCCTGTGACTCCATGGCTGT 60.838 55.000 6.96 8.49 0.00 4.40
1774 1783 1.941734 GAGCGCGATCTTCTGTCCG 60.942 63.158 18.63 0.00 0.00 4.79
1940 1979 2.738521 GGTGCACGACAGCGACAT 60.739 61.111 11.45 0.00 41.64 3.06
2092 2146 2.437359 CCGACGAGGTACCCGAGT 60.437 66.667 23.94 15.15 30.68 4.18
2598 2652 0.528466 TAGCGATCTTGCTTGGCTCG 60.528 55.000 0.19 0.00 44.46 5.03
2599 2653 1.876322 ATAGCGATCTTGCTTGGCTC 58.124 50.000 0.19 0.00 44.46 4.70
2600 2654 3.692257 ATATAGCGATCTTGCTTGGCT 57.308 42.857 0.19 0.00 44.46 4.75
2601 2655 4.756084 AAATATAGCGATCTTGCTTGGC 57.244 40.909 0.19 0.00 44.46 4.52
2602 2656 7.865707 ACTTTAAATATAGCGATCTTGCTTGG 58.134 34.615 0.19 0.00 44.46 3.61
2649 2703 3.323243 ACGAATTGAACGACCTAACTGG 58.677 45.455 0.00 0.00 42.93 4.00
2793 2948 1.269517 GGTGGCGTTCAAAGAAATGCA 60.270 47.619 0.00 0.00 41.88 3.96
2794 2949 1.269517 TGGTGGCGTTCAAAGAAATGC 60.270 47.619 0.00 0.00 39.85 3.56
2809 2964 1.745087 CGAGGTGGAATGATTTGGTGG 59.255 52.381 0.00 0.00 0.00 4.61
2834 2989 4.345859 ACGTCTATTTGAAACCACTCCA 57.654 40.909 0.00 0.00 0.00 3.86
2840 2995 4.276431 TGGGTTGAACGTCTATTTGAAACC 59.724 41.667 0.00 0.00 36.03 3.27
2853 3008 1.734163 GGTGGAGTATGGGTTGAACG 58.266 55.000 0.00 0.00 0.00 3.95
2883 3038 9.816354 AACATTGCTAAAGTTTATGAGTTTTGT 57.184 25.926 3.62 0.00 33.11 2.83
2948 3103 5.632034 AATAAGACTACATGGGGAGGTTC 57.368 43.478 0.00 0.00 0.00 3.62
2950 3105 6.402981 AAAAATAAGACTACATGGGGAGGT 57.597 37.500 0.00 0.00 0.00 3.85
2956 3111 6.037172 CACGGAGGAAAAATAAGACTACATGG 59.963 42.308 0.00 0.00 0.00 3.66
2960 3115 6.426025 ACAACACGGAGGAAAAATAAGACTAC 59.574 38.462 0.00 0.00 0.00 2.73
2961 3116 6.527423 ACAACACGGAGGAAAAATAAGACTA 58.473 36.000 0.00 0.00 0.00 2.59
2966 3121 6.263392 TCATTGACAACACGGAGGAAAAATAA 59.737 34.615 0.00 0.00 0.00 1.40
2979 3134 6.017933 CGATCTTTTAGCTCATTGACAACAC 58.982 40.000 0.00 0.00 0.00 3.32
2985 3140 5.412594 AGTTTGCGATCTTTTAGCTCATTGA 59.587 36.000 0.00 0.00 0.00 2.57
2989 3144 4.569943 AGAGTTTGCGATCTTTTAGCTCA 58.430 39.130 0.00 0.00 0.00 4.26
2996 3151 4.821805 TCCAAAGAAGAGTTTGCGATCTTT 59.178 37.500 0.00 0.00 40.06 2.52
2997 3152 4.389374 TCCAAAGAAGAGTTTGCGATCTT 58.611 39.130 0.00 0.00 38.46 2.40
2998 3153 4.008074 TCCAAAGAAGAGTTTGCGATCT 57.992 40.909 0.00 0.00 36.29 2.75
2999 3154 4.954092 ATCCAAAGAAGAGTTTGCGATC 57.046 40.909 0.00 0.00 36.29 3.69
3000 3155 6.127897 CCTTAATCCAAAGAAGAGTTTGCGAT 60.128 38.462 0.00 0.00 36.29 4.58
3001 3156 5.181245 CCTTAATCCAAAGAAGAGTTTGCGA 59.819 40.000 0.00 0.00 36.29 5.10
3002 3157 5.048713 ACCTTAATCCAAAGAAGAGTTTGCG 60.049 40.000 0.00 0.00 36.29 4.85
3003 3158 6.152379 CACCTTAATCCAAAGAAGAGTTTGC 58.848 40.000 0.00 0.00 36.29 3.68
3004 3159 6.265422 ACCACCTTAATCCAAAGAAGAGTTTG 59.735 38.462 0.00 0.00 37.20 2.93
3005 3160 6.373759 ACCACCTTAATCCAAAGAAGAGTTT 58.626 36.000 0.00 0.00 0.00 2.66
3006 3161 5.953571 ACCACCTTAATCCAAAGAAGAGTT 58.046 37.500 0.00 0.00 0.00 3.01
3007 3162 5.584551 ACCACCTTAATCCAAAGAAGAGT 57.415 39.130 0.00 0.00 0.00 3.24
3008 3163 5.586643 GCTACCACCTTAATCCAAAGAAGAG 59.413 44.000 0.00 0.00 0.00 2.85
3009 3164 5.250774 AGCTACCACCTTAATCCAAAGAAGA 59.749 40.000 0.00 0.00 0.00 2.87
3010 3165 5.355350 CAGCTACCACCTTAATCCAAAGAAG 59.645 44.000 0.00 0.00 0.00 2.85
3011 3166 5.222048 ACAGCTACCACCTTAATCCAAAGAA 60.222 40.000 0.00 0.00 0.00 2.52
3012 3167 4.288626 ACAGCTACCACCTTAATCCAAAGA 59.711 41.667 0.00 0.00 0.00 2.52
3013 3168 4.589908 ACAGCTACCACCTTAATCCAAAG 58.410 43.478 0.00 0.00 0.00 2.77
3014 3169 4.650972 ACAGCTACCACCTTAATCCAAA 57.349 40.909 0.00 0.00 0.00 3.28
3015 3170 5.249852 ACTTACAGCTACCACCTTAATCCAA 59.750 40.000 0.00 0.00 0.00 3.53
3016 3171 4.781087 ACTTACAGCTACCACCTTAATCCA 59.219 41.667 0.00 0.00 0.00 3.41
3017 3172 5.354842 ACTTACAGCTACCACCTTAATCC 57.645 43.478 0.00 0.00 0.00 3.01
3018 3173 6.760298 GGTTACTTACAGCTACCACCTTAATC 59.240 42.308 0.00 0.00 0.00 1.75
3019 3174 6.214005 TGGTTACTTACAGCTACCACCTTAAT 59.786 38.462 0.00 0.00 34.13 1.40
3020 3175 5.543405 TGGTTACTTACAGCTACCACCTTAA 59.457 40.000 0.00 0.00 34.13 1.85
3021 3176 5.085920 TGGTTACTTACAGCTACCACCTTA 58.914 41.667 0.00 0.00 34.13 2.69
3022 3177 3.905591 TGGTTACTTACAGCTACCACCTT 59.094 43.478 0.00 0.00 34.13 3.50
3023 3178 3.513517 TGGTTACTTACAGCTACCACCT 58.486 45.455 0.00 0.00 34.13 4.00
3024 3179 3.967332 TGGTTACTTACAGCTACCACC 57.033 47.619 0.00 0.00 34.13 4.61
3025 3180 4.110482 CGATGGTTACTTACAGCTACCAC 58.890 47.826 4.41 0.00 41.31 4.16
3026 3181 4.018490 TCGATGGTTACTTACAGCTACCA 58.982 43.478 4.78 4.78 42.57 3.25
3027 3182 4.097589 AGTCGATGGTTACTTACAGCTACC 59.902 45.833 0.00 0.00 0.00 3.18
3028 3183 5.246145 AGTCGATGGTTACTTACAGCTAC 57.754 43.478 0.00 0.00 0.00 3.58
3029 3184 7.578310 AATAGTCGATGGTTACTTACAGCTA 57.422 36.000 0.00 0.00 0.00 3.32
3030 3185 6.466885 AATAGTCGATGGTTACTTACAGCT 57.533 37.500 0.00 0.00 0.00 4.24
3031 3186 6.018994 CCAAATAGTCGATGGTTACTTACAGC 60.019 42.308 0.00 0.00 0.00 4.40
3032 3187 7.262772 TCCAAATAGTCGATGGTTACTTACAG 58.737 38.462 2.09 0.00 35.66 2.74
3033 3188 7.172868 TCCAAATAGTCGATGGTTACTTACA 57.827 36.000 2.09 0.00 35.66 2.41
3034 3189 8.483307 TTTCCAAATAGTCGATGGTTACTTAC 57.517 34.615 2.09 0.00 35.66 2.34
3035 3190 9.104965 CATTTCCAAATAGTCGATGGTTACTTA 57.895 33.333 2.09 0.00 35.66 2.24
3036 3191 7.827236 TCATTTCCAAATAGTCGATGGTTACTT 59.173 33.333 2.09 0.00 35.66 2.24
3037 3192 7.335627 TCATTTCCAAATAGTCGATGGTTACT 58.664 34.615 2.09 0.00 35.66 2.24
3038 3193 7.548196 TCATTTCCAAATAGTCGATGGTTAC 57.452 36.000 2.09 0.00 35.66 2.50
3039 3194 7.255104 GCATCATTTCCAAATAGTCGATGGTTA 60.255 37.037 2.09 0.00 35.66 2.85
3040 3195 6.460123 GCATCATTTCCAAATAGTCGATGGTT 60.460 38.462 2.09 0.00 35.66 3.67
3041 3196 5.009010 GCATCATTTCCAAATAGTCGATGGT 59.991 40.000 2.09 0.00 35.66 3.55
3042 3197 5.008911 TGCATCATTTCCAAATAGTCGATGG 59.991 40.000 10.06 0.00 31.23 3.51
3043 3198 5.911280 GTGCATCATTTCCAAATAGTCGATG 59.089 40.000 0.00 0.00 32.55 3.84
3044 3199 5.824624 AGTGCATCATTTCCAAATAGTCGAT 59.175 36.000 0.00 0.00 0.00 3.59
3045 3200 5.065090 CAGTGCATCATTTCCAAATAGTCGA 59.935 40.000 0.00 0.00 0.00 4.20
3046 3201 5.268544 CAGTGCATCATTTCCAAATAGTCG 58.731 41.667 0.00 0.00 0.00 4.18
3047 3202 5.039333 GCAGTGCATCATTTCCAAATAGTC 58.961 41.667 11.09 0.00 0.00 2.59
3048 3203 4.463539 TGCAGTGCATCATTTCCAAATAGT 59.536 37.500 15.37 0.00 31.71 2.12
3049 3204 4.802039 GTGCAGTGCATCATTTCCAAATAG 59.198 41.667 22.87 0.00 41.91 1.73
3050 3205 4.220163 TGTGCAGTGCATCATTTCCAAATA 59.780 37.500 22.87 0.00 41.91 1.40
3051 3206 3.007074 TGTGCAGTGCATCATTTCCAAAT 59.993 39.130 22.87 0.00 41.91 2.32
3052 3207 2.364647 TGTGCAGTGCATCATTTCCAAA 59.635 40.909 22.87 0.00 41.91 3.28
3053 3208 1.962100 TGTGCAGTGCATCATTTCCAA 59.038 42.857 22.87 0.00 41.91 3.53
3054 3209 1.618487 TGTGCAGTGCATCATTTCCA 58.382 45.000 22.87 9.74 41.91 3.53
3055 3210 2.029649 AGTTGTGCAGTGCATCATTTCC 60.030 45.455 22.87 6.89 41.91 3.13
3056 3211 2.984471 CAGTTGTGCAGTGCATCATTTC 59.016 45.455 22.87 7.69 41.91 2.17
3057 3212 2.624364 TCAGTTGTGCAGTGCATCATTT 59.376 40.909 22.87 9.28 41.91 2.32
3058 3213 2.030540 GTCAGTTGTGCAGTGCATCATT 60.031 45.455 22.87 4.85 41.91 2.57
3059 3214 1.538512 GTCAGTTGTGCAGTGCATCAT 59.461 47.619 22.87 5.15 41.91 2.45
3060 3215 0.946528 GTCAGTTGTGCAGTGCATCA 59.053 50.000 22.87 17.57 41.91 3.07
3061 3216 0.946528 TGTCAGTTGTGCAGTGCATC 59.053 50.000 22.87 15.14 41.91 3.91
3062 3217 1.066002 GTTGTCAGTTGTGCAGTGCAT 59.934 47.619 22.87 1.23 41.91 3.96
3063 3218 0.451383 GTTGTCAGTTGTGCAGTGCA 59.549 50.000 15.37 15.37 35.60 4.57
3064 3219 0.451383 TGTTGTCAGTTGTGCAGTGC 59.549 50.000 8.58 8.58 0.00 4.40
3065 3220 2.917701 TTGTTGTCAGTTGTGCAGTG 57.082 45.000 0.00 0.00 0.00 3.66
3066 3221 3.016031 TGATTGTTGTCAGTTGTGCAGT 58.984 40.909 0.00 0.00 0.00 4.40
3067 3222 3.696281 TGATTGTTGTCAGTTGTGCAG 57.304 42.857 0.00 0.00 0.00 4.41
3068 3223 3.192212 TGTTGATTGTTGTCAGTTGTGCA 59.808 39.130 0.00 0.00 0.00 4.57
3069 3224 3.768406 TGTTGATTGTTGTCAGTTGTGC 58.232 40.909 0.00 0.00 0.00 4.57
3070 3225 5.159925 TGTTGTTGATTGTTGTCAGTTGTG 58.840 37.500 0.00 0.00 0.00 3.33
3071 3226 5.048083 ACTGTTGTTGATTGTTGTCAGTTGT 60.048 36.000 0.00 0.00 32.15 3.32
3072 3227 5.401550 ACTGTTGTTGATTGTTGTCAGTTG 58.598 37.500 0.00 0.00 32.15 3.16
3073 3228 5.643379 ACTGTTGTTGATTGTTGTCAGTT 57.357 34.783 0.00 0.00 32.15 3.16
3074 3229 6.942532 ATACTGTTGTTGATTGTTGTCAGT 57.057 33.333 0.00 0.00 38.26 3.41
3075 3230 6.638063 CCAATACTGTTGTTGATTGTTGTCAG 59.362 38.462 7.05 0.00 0.00 3.51
3076 3231 6.096141 ACCAATACTGTTGTTGATTGTTGTCA 59.904 34.615 7.05 0.00 0.00 3.58
3077 3232 6.503524 ACCAATACTGTTGTTGATTGTTGTC 58.496 36.000 7.05 0.00 0.00 3.18
3078 3233 6.463995 ACCAATACTGTTGTTGATTGTTGT 57.536 33.333 7.05 0.00 0.00 3.32
3079 3234 9.474920 AAATACCAATACTGTTGTTGATTGTTG 57.525 29.630 7.05 0.00 0.00 3.33
3080 3235 9.474920 CAAATACCAATACTGTTGTTGATTGTT 57.525 29.630 7.05 0.00 0.00 2.83
3081 3236 8.637986 ACAAATACCAATACTGTTGTTGATTGT 58.362 29.630 7.05 8.78 0.00 2.71
3082 3237 9.128107 GACAAATACCAATACTGTTGTTGATTG 57.872 33.333 7.05 1.42 29.75 2.67
3083 3238 8.020819 CGACAAATACCAATACTGTTGTTGATT 58.979 33.333 7.05 0.00 33.90 2.57
3084 3239 7.526608 CGACAAATACCAATACTGTTGTTGAT 58.473 34.615 7.05 0.00 33.90 2.57
3085 3240 6.566942 GCGACAAATACCAATACTGTTGTTGA 60.567 38.462 5.90 0.00 33.90 3.18
3086 3241 5.567534 GCGACAAATACCAATACTGTTGTTG 59.432 40.000 0.00 0.00 34.75 3.33
3087 3242 5.239744 TGCGACAAATACCAATACTGTTGTT 59.760 36.000 0.00 0.00 29.75 2.83
3088 3243 4.757657 TGCGACAAATACCAATACTGTTGT 59.242 37.500 0.00 0.00 32.15 3.32
3089 3244 5.289917 TGCGACAAATACCAATACTGTTG 57.710 39.130 0.00 0.00 0.00 3.33
3090 3245 5.414454 ACATGCGACAAATACCAATACTGTT 59.586 36.000 0.00 0.00 0.00 3.16
3091 3246 4.941263 ACATGCGACAAATACCAATACTGT 59.059 37.500 0.00 0.00 0.00 3.55
3092 3247 5.484173 ACATGCGACAAATACCAATACTG 57.516 39.130 0.00 0.00 0.00 2.74
3093 3248 6.110033 TGTACATGCGACAAATACCAATACT 58.890 36.000 0.00 0.00 0.00 2.12
3094 3249 6.352682 TGTACATGCGACAAATACCAATAC 57.647 37.500 0.00 0.00 0.00 1.89
3095 3250 7.561021 AATGTACATGCGACAAATACCAATA 57.439 32.000 9.63 0.00 0.00 1.90
3096 3251 6.449635 AATGTACATGCGACAAATACCAAT 57.550 33.333 9.63 0.00 0.00 3.16
3097 3252 5.888691 AATGTACATGCGACAAATACCAA 57.111 34.783 9.63 0.00 0.00 3.67
3098 3253 6.763610 TCATAATGTACATGCGACAAATACCA 59.236 34.615 9.63 0.00 0.00 3.25
3099 3254 7.042051 ACTCATAATGTACATGCGACAAATACC 60.042 37.037 9.63 0.00 0.00 2.73
3100 3255 7.851508 ACTCATAATGTACATGCGACAAATAC 58.148 34.615 9.63 0.00 0.00 1.89
3101 3256 8.974408 GTACTCATAATGTACATGCGACAAATA 58.026 33.333 9.63 0.00 39.79 1.40
3102 3257 6.925610 ACTCATAATGTACATGCGACAAAT 57.074 33.333 9.63 0.00 0.00 2.32
3103 3258 6.256975 GGTACTCATAATGTACATGCGACAAA 59.743 38.462 9.63 0.00 41.27 2.83
3104 3259 5.751509 GGTACTCATAATGTACATGCGACAA 59.248 40.000 9.63 0.00 41.27 3.18
3105 3260 5.286438 GGTACTCATAATGTACATGCGACA 58.714 41.667 9.63 3.69 41.27 4.35
3106 3261 4.381863 CGGTACTCATAATGTACATGCGAC 59.618 45.833 9.63 1.50 41.27 5.19
3107 3262 4.276431 TCGGTACTCATAATGTACATGCGA 59.724 41.667 9.63 5.60 41.27 5.10
3108 3263 4.542735 TCGGTACTCATAATGTACATGCG 58.457 43.478 9.63 1.07 41.27 4.73
3109 3264 5.769367 TCTCGGTACTCATAATGTACATGC 58.231 41.667 9.63 0.00 41.27 4.06
3110 3265 9.908152 TTAATCTCGGTACTCATAATGTACATG 57.092 33.333 9.63 0.00 41.27 3.21
3115 3270 8.861086 ACTGATTAATCTCGGTACTCATAATGT 58.139 33.333 16.24 0.00 32.95 2.71
3116 3271 9.698309 AACTGATTAATCTCGGTACTCATAATG 57.302 33.333 16.24 0.00 33.59 1.90
3121 3276 9.582431 CTTTTAACTGATTAATCTCGGTACTCA 57.418 33.333 16.24 0.00 33.59 3.41
3122 3277 8.541312 GCTTTTAACTGATTAATCTCGGTACTC 58.459 37.037 16.24 0.00 33.59 2.59
3123 3278 8.038944 TGCTTTTAACTGATTAATCTCGGTACT 58.961 33.333 16.24 2.79 33.59 2.73
3124 3279 8.193250 TGCTTTTAACTGATTAATCTCGGTAC 57.807 34.615 16.24 0.00 33.59 3.34
3125 3280 8.662141 GTTGCTTTTAACTGATTAATCTCGGTA 58.338 33.333 16.24 7.78 33.59 4.02
3126 3281 7.390718 AGTTGCTTTTAACTGATTAATCTCGGT 59.609 33.333 16.24 8.69 39.33 4.69
3127 3282 7.752695 AGTTGCTTTTAACTGATTAATCTCGG 58.247 34.615 16.24 8.99 39.33 4.63
3128 3283 9.267096 GAAGTTGCTTTTAACTGATTAATCTCG 57.733 33.333 16.24 9.77 40.58 4.04
3133 3288 9.474920 CCATTGAAGTTGCTTTTAACTGATTAA 57.525 29.630 0.00 0.00 40.58 1.40
3134 3289 8.087750 CCCATTGAAGTTGCTTTTAACTGATTA 58.912 33.333 0.00 0.00 40.58 1.75
3135 3290 6.930722 CCCATTGAAGTTGCTTTTAACTGATT 59.069 34.615 0.00 0.00 40.58 2.57
3136 3291 6.458210 CCCATTGAAGTTGCTTTTAACTGAT 58.542 36.000 0.00 0.00 40.58 2.90
3137 3292 5.221422 CCCCATTGAAGTTGCTTTTAACTGA 60.221 40.000 0.00 0.00 40.58 3.41
3138 3293 4.990426 CCCCATTGAAGTTGCTTTTAACTG 59.010 41.667 0.00 0.00 40.58 3.16
3139 3294 4.503123 GCCCCATTGAAGTTGCTTTTAACT 60.503 41.667 0.00 0.00 42.43 2.24
3140 3295 3.745975 GCCCCATTGAAGTTGCTTTTAAC 59.254 43.478 0.00 0.00 0.00 2.01
3192 3347 1.571215 GCCGACCCAAACGAACGAAT 61.571 55.000 0.14 0.00 0.00 3.34
3195 3350 3.719144 GGCCGACCCAAACGAACG 61.719 66.667 0.00 0.00 0.00 3.95
3198 3353 4.238654 AACGGCCGACCCAAACGA 62.239 61.111 35.90 0.00 0.00 3.85
3226 3382 2.775384 ACCCATATCTAAAACAGGGCGA 59.225 45.455 0.00 0.00 39.97 5.54
3296 3452 0.110147 TTTGTTGAAATACGGCGGCG 60.110 50.000 31.06 31.06 0.00 6.46
3303 3459 9.745323 GCAAAATTGAGCTATTTGTTGAAATAC 57.255 29.630 12.51 0.00 36.63 1.89
3401 3607 3.425193 CGGCTTGCAAAACTATGTGAAAC 59.575 43.478 0.00 0.00 37.35 2.78
3403 3622 2.881513 TCGGCTTGCAAAACTATGTGAA 59.118 40.909 0.00 0.00 0.00 3.18
3543 3795 3.086391 GCCTGAGCATGGAGAGCGA 62.086 63.158 0.00 0.00 39.53 4.93
3602 3856 4.388499 ACGAGCGCCCGGAACATT 62.388 61.111 17.66 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.