Multiple sequence alignment - TraesCS5A01G149700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G149700 chr5A 100.000 3836 0 0 1 3836 327578750 327574915 0.000000e+00 7084.0
1 TraesCS5A01G149700 chr1B 87.556 1350 74 29 2552 3833 280713176 280711853 0.000000e+00 1476.0
2 TraesCS5A01G149700 chr1B 88.454 1022 70 17 524 1535 280715330 280714347 0.000000e+00 1190.0
3 TraesCS5A01G149700 chr1B 92.617 596 31 8 1659 2246 280714145 280713555 0.000000e+00 845.0
4 TraesCS5A01G149700 chr1B 91.346 208 17 1 2284 2491 280713386 280713180 2.260000e-72 283.0
5 TraesCS5A01G149700 chr1B 85.507 138 18 2 325 461 639063125 639062989 3.990000e-30 143.0
6 TraesCS5A01G149700 chr1B 77.957 186 34 7 368 550 6758962 6759143 4.050000e-20 110.0
7 TraesCS5A01G149700 chr3A 89.078 879 50 5 1402 2246 721553475 721554341 0.000000e+00 1050.0
8 TraesCS5A01G149700 chr3A 91.812 745 38 6 2284 3014 721554514 721555249 0.000000e+00 1016.0
9 TraesCS5A01G149700 chr3A 87.875 833 46 15 3028 3833 721556723 721557527 0.000000e+00 928.0
10 TraesCS5A01G149700 chr3A 90.240 625 54 3 788 1410 721545310 721545929 0.000000e+00 809.0
11 TraesCS5A01G149700 chr3A 87.629 97 10 2 1 96 54346151 54346056 1.130000e-20 111.0
12 TraesCS5A01G149700 chr3A 100.000 41 0 0 2243 2283 721554413 721554453 4.110000e-10 76.8
13 TraesCS5A01G149700 chr3B 86.567 603 40 15 3256 3833 42601831 42602417 9.050000e-176 627.0
14 TraesCS5A01G149700 chr3B 88.482 191 18 4 3256 3446 8694785 8694971 1.070000e-55 228.0
15 TraesCS5A01G149700 chr3B 75.000 232 51 7 326 554 160147960 160147733 2.440000e-17 100.0
16 TraesCS5A01G149700 chr5D 86.076 237 24 7 94 327 229152973 229153203 2.960000e-61 246.0
17 TraesCS5A01G149700 chr5D 87.755 98 9 3 13 109 78015879 78015974 1.130000e-20 111.0
18 TraesCS5A01G149700 chr6B 89.529 191 17 3 3256 3446 691827521 691827708 4.950000e-59 239.0
19 TraesCS5A01G149700 chr6B 77.293 229 44 8 326 550 198157419 198157643 1.120000e-25 128.0
20 TraesCS5A01G149700 chr6B 88.542 96 9 2 1 95 141106404 141106498 8.710000e-22 115.0
21 TraesCS5A01G149700 chr6B 75.877 228 51 4 329 554 128127 128352 3.130000e-21 113.0
22 TraesCS5A01G149700 chr2A 89.362 188 17 3 3259 3446 635595736 635595552 2.300000e-57 233.0
23 TraesCS5A01G149700 chr2A 87.500 152 18 1 3296 3446 762903268 762903419 1.420000e-39 174.0
24 TraesCS5A01G149700 chr2A 86.765 136 16 2 324 458 775193752 775193886 2.390000e-32 150.0
25 TraesCS5A01G149700 chr2A 89.130 92 10 0 5 96 419474816 419474725 8.710000e-22 115.0
26 TraesCS5A01G149700 chr4A 88.816 152 16 1 3296 3446 648993348 648993499 6.540000e-43 185.0
27 TraesCS5A01G149700 chr2D 95.349 86 4 0 3748 3833 643666121 643666206 1.860000e-28 137.0
28 TraesCS5A01G149700 chr2D 93.548 62 4 0 3358 3419 189524613 189524674 4.080000e-15 93.5
29 TraesCS5A01G149700 chr2B 95.349 86 4 0 3748 3833 793432407 793432322 1.860000e-28 137.0
30 TraesCS5A01G149700 chr1A 87.611 113 12 2 1 112 82720019 82720130 3.110000e-26 130.0
31 TraesCS5A01G149700 chr1A 87.952 83 10 0 324 406 137922909 137922827 8.770000e-17 99.0
32 TraesCS5A01G149700 chr7D 76.596 235 50 5 319 550 629030312 629030544 1.450000e-24 124.0
33 TraesCS5A01G149700 chr7D 90.110 91 7 2 1 90 25055187 25055098 2.420000e-22 117.0
34 TraesCS5A01G149700 chr5B 76.957 230 46 7 324 550 18676288 18676513 1.450000e-24 124.0
35 TraesCS5A01G149700 chr5B 95.652 69 3 0 259 327 276668635 276668567 1.130000e-20 111.0
36 TraesCS5A01G149700 chr7B 90.110 91 9 0 5 95 304527269 304527179 6.730000e-23 119.0
37 TraesCS5A01G149700 chr4B 76.995 213 44 5 322 531 465006335 465006125 2.420000e-22 117.0
38 TraesCS5A01G149700 chr4B 88.542 96 11 0 1 96 664775712 664775617 2.420000e-22 117.0
39 TraesCS5A01G149700 chr7A 84.259 108 15 2 1 107 2585112 2585218 1.890000e-18 104.0
40 TraesCS5A01G149700 chr7A 90.123 81 7 1 97 177 142645948 142645869 1.890000e-18 104.0
41 TraesCS5A01G149700 chr3D 75.648 193 43 4 325 515 584030285 584030475 4.080000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G149700 chr5A 327574915 327578750 3835 True 7084.0 7084 100.00000 1 3836 1 chr5A.!!$R1 3835
1 TraesCS5A01G149700 chr1B 280711853 280715330 3477 True 948.5 1476 89.99325 524 3833 4 chr1B.!!$R2 3309
2 TraesCS5A01G149700 chr3A 721545310 721545929 619 False 809.0 809 90.24000 788 1410 1 chr3A.!!$F1 622
3 TraesCS5A01G149700 chr3A 721553475 721557527 4052 False 767.7 1050 92.19125 1402 3833 4 chr3A.!!$F2 2431
4 TraesCS5A01G149700 chr3B 42601831 42602417 586 False 627.0 627 86.56700 3256 3833 1 chr3B.!!$F2 577

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
518 519 0.039618 ATTCTTGGATGCGGTTGGGT 59.960 50.0 0.00 0.0 0.00 4.51 F
734 739 0.107410 TTGCGTGGTTTCTGTGGACT 60.107 50.0 0.00 0.0 0.00 3.85 F
1220 1234 0.179073 CGGCCATGTCGGAAGATTCT 60.179 55.0 2.24 0.0 45.19 2.40 F
1488 1504 0.313987 TTCACTGCTCGATGTCGTGT 59.686 50.0 2.04 0.0 40.80 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1763 1866 0.108851 CATCCACCGTCATCGTCACA 60.109 55.0 0.00 0.0 35.01 3.58 R
2545 2839 0.397535 CAATGGATTGTGGGGGAGGG 60.398 60.0 0.00 0.0 33.22 4.30 R
2783 3091 0.250684 TGACATGTGTTGGGCGATGT 60.251 50.0 1.15 0.0 0.00 3.06 R
2939 3247 0.902531 TCACTTAGGTGCCTAGTGCC 59.097 55.0 16.18 0.0 42.72 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.271936 CTCTCTTCGTCTCAAAATAAGTGTC 57.728 40.000 0.00 0.00 0.00 3.67
25 26 6.982852 TCTCTTCGTCTCAAAATAAGTGTCT 58.017 36.000 0.00 0.00 0.00 3.41
26 27 7.434492 TCTCTTCGTCTCAAAATAAGTGTCTT 58.566 34.615 0.00 0.00 0.00 3.01
27 28 8.573885 TCTCTTCGTCTCAAAATAAGTGTCTTA 58.426 33.333 0.00 0.00 0.00 2.10
28 29 9.193133 CTCTTCGTCTCAAAATAAGTGTCTTAA 57.807 33.333 0.00 0.00 0.00 1.85
29 30 8.975439 TCTTCGTCTCAAAATAAGTGTCTTAAC 58.025 33.333 0.00 0.00 0.00 2.01
30 31 7.329438 TCGTCTCAAAATAAGTGTCTTAACG 57.671 36.000 0.00 0.00 0.00 3.18
31 32 6.919662 TCGTCTCAAAATAAGTGTCTTAACGT 59.080 34.615 0.00 0.00 0.00 3.99
32 33 7.113965 TCGTCTCAAAATAAGTGTCTTAACGTC 59.886 37.037 0.00 0.00 0.00 4.34
33 34 7.096353 CGTCTCAAAATAAGTGTCTTAACGTCA 60.096 37.037 0.00 0.00 0.00 4.35
34 35 8.215132 GTCTCAAAATAAGTGTCTTAACGTCAG 58.785 37.037 0.00 0.00 0.00 3.51
35 36 7.924412 TCTCAAAATAAGTGTCTTAACGTCAGT 59.076 33.333 0.00 0.00 0.00 3.41
36 37 9.188588 CTCAAAATAAGTGTCTTAACGTCAGTA 57.811 33.333 0.00 0.00 0.00 2.74
37 38 9.701098 TCAAAATAAGTGTCTTAACGTCAGTAT 57.299 29.630 0.00 0.00 0.00 2.12
44 45 8.516811 AGTGTCTTAACGTCAGTATAACTTTG 57.483 34.615 0.00 0.00 0.00 2.77
45 46 8.139989 AGTGTCTTAACGTCAGTATAACTTTGT 58.860 33.333 0.00 0.00 0.00 2.83
46 47 9.398170 GTGTCTTAACGTCAGTATAACTTTGTA 57.602 33.333 0.00 0.00 0.00 2.41
47 48 9.398170 TGTCTTAACGTCAGTATAACTTTGTAC 57.602 33.333 0.00 0.00 0.00 2.90
48 49 9.617975 GTCTTAACGTCAGTATAACTTTGTACT 57.382 33.333 0.00 0.00 35.80 2.73
53 54 9.971922 AACGTCAGTATAACTTTGTACTAAAGT 57.028 29.630 14.04 14.04 41.82 2.66
89 90 9.665264 GTTGAGACACTTATTTTAAGACAAAGG 57.335 33.333 1.47 0.00 0.00 3.11
90 91 9.621629 TTGAGACACTTATTTTAAGACAAAGGA 57.378 29.630 1.47 0.00 0.00 3.36
91 92 9.621629 TGAGACACTTATTTTAAGACAAAGGAA 57.378 29.630 1.47 0.00 0.00 3.36
93 94 9.628500 AGACACTTATTTTAAGACAAAGGAAGT 57.372 29.630 1.47 0.00 30.96 3.01
105 106 8.463930 AAGACAAAGGAAGTATGAATCAAACA 57.536 30.769 0.00 0.00 0.00 2.83
106 107 8.463930 AGACAAAGGAAGTATGAATCAAACAA 57.536 30.769 0.00 0.00 0.00 2.83
107 108 9.082313 AGACAAAGGAAGTATGAATCAAACAAT 57.918 29.630 0.00 0.00 0.00 2.71
108 109 9.346725 GACAAAGGAAGTATGAATCAAACAATC 57.653 33.333 0.00 0.00 0.00 2.67
109 110 9.082313 ACAAAGGAAGTATGAATCAAACAATCT 57.918 29.630 0.00 0.00 0.00 2.40
113 114 9.965902 AGGAAGTATGAATCAAACAATCTAACT 57.034 29.630 0.00 0.00 0.00 2.24
164 165 8.940397 TTCTTCAAAAGTCCTATGAAAATCCT 57.060 30.769 0.00 0.00 33.08 3.24
165 166 8.940397 TCTTCAAAAGTCCTATGAAAATCCTT 57.060 30.769 0.00 0.00 33.08 3.36
166 167 9.367160 TCTTCAAAAGTCCTATGAAAATCCTTT 57.633 29.630 0.00 0.00 33.08 3.11
167 168 9.415544 CTTCAAAAGTCCTATGAAAATCCTTTG 57.584 33.333 0.00 0.00 33.08 2.77
168 169 8.704849 TCAAAAGTCCTATGAAAATCCTTTGA 57.295 30.769 0.00 0.00 0.00 2.69
169 170 9.142014 TCAAAAGTCCTATGAAAATCCTTTGAA 57.858 29.630 0.00 0.00 0.00 2.69
170 171 9.196552 CAAAAGTCCTATGAAAATCCTTTGAAC 57.803 33.333 0.00 0.00 0.00 3.18
171 172 7.468141 AAGTCCTATGAAAATCCTTTGAACC 57.532 36.000 0.00 0.00 0.00 3.62
172 173 6.552008 AGTCCTATGAAAATCCTTTGAACCA 58.448 36.000 0.00 0.00 0.00 3.67
173 174 7.010160 AGTCCTATGAAAATCCTTTGAACCAA 58.990 34.615 0.00 0.00 0.00 3.67
174 175 7.177392 AGTCCTATGAAAATCCTTTGAACCAAG 59.823 37.037 0.00 0.00 0.00 3.61
175 176 6.437162 TCCTATGAAAATCCTTTGAACCAAGG 59.563 38.462 0.00 0.00 0.00 3.61
176 177 6.437162 CCTATGAAAATCCTTTGAACCAAGGA 59.563 38.462 9.28 9.28 34.66 3.36
177 178 5.789643 TGAAAATCCTTTGAACCAAGGAG 57.210 39.130 11.85 0.00 33.55 3.69
178 179 4.039124 TGAAAATCCTTTGAACCAAGGAGC 59.961 41.667 11.85 4.21 33.55 4.70
179 180 2.222227 ATCCTTTGAACCAAGGAGCC 57.778 50.000 11.85 0.00 33.55 4.70
180 181 0.112412 TCCTTTGAACCAAGGAGCCC 59.888 55.000 3.70 0.00 0.00 5.19
181 182 0.113190 CCTTTGAACCAAGGAGCCCT 59.887 55.000 0.00 0.00 33.87 5.19
182 183 1.539157 CTTTGAACCAAGGAGCCCTC 58.461 55.000 0.00 0.00 30.89 4.30
183 184 1.074566 CTTTGAACCAAGGAGCCCTCT 59.925 52.381 0.00 0.00 30.89 3.69
184 185 1.149101 TTGAACCAAGGAGCCCTCTT 58.851 50.000 0.00 0.00 30.89 2.85
185 186 2.038863 TGAACCAAGGAGCCCTCTTA 57.961 50.000 0.00 0.00 30.89 2.10
186 187 1.909302 TGAACCAAGGAGCCCTCTTAG 59.091 52.381 0.00 0.00 30.89 2.18
187 188 0.621082 AACCAAGGAGCCCTCTTAGC 59.379 55.000 0.00 0.00 30.89 3.09
188 189 0.547712 ACCAAGGAGCCCTCTTAGCA 60.548 55.000 0.00 0.00 30.89 3.49
189 190 0.842635 CCAAGGAGCCCTCTTAGCAT 59.157 55.000 0.00 0.00 30.89 3.79
190 191 1.476471 CCAAGGAGCCCTCTTAGCATG 60.476 57.143 0.00 0.00 30.89 4.06
191 192 0.842635 AAGGAGCCCTCTTAGCATGG 59.157 55.000 0.00 0.00 30.89 3.66
192 193 0.327000 AGGAGCCCTCTTAGCATGGT 60.327 55.000 1.62 1.62 0.00 3.55
193 194 0.107643 GGAGCCCTCTTAGCATGGTC 59.892 60.000 0.00 0.00 0.00 4.02
194 195 1.127343 GAGCCCTCTTAGCATGGTCT 58.873 55.000 0.00 0.00 0.00 3.85
195 196 1.069978 GAGCCCTCTTAGCATGGTCTC 59.930 57.143 0.00 0.00 0.00 3.36
196 197 0.107643 GCCCTCTTAGCATGGTCTCC 59.892 60.000 0.00 0.00 0.00 3.71
197 198 0.761802 CCCTCTTAGCATGGTCTCCC 59.238 60.000 0.00 0.00 0.00 4.30
199 200 1.139853 CCTCTTAGCATGGTCTCCCAC 59.860 57.143 0.00 0.00 45.65 4.61
200 201 1.833630 CTCTTAGCATGGTCTCCCACA 59.166 52.381 0.00 0.00 45.65 4.17
201 202 2.437281 CTCTTAGCATGGTCTCCCACAT 59.563 50.000 0.00 0.00 45.65 3.21
202 203 2.846206 TCTTAGCATGGTCTCCCACATT 59.154 45.455 0.00 0.00 45.65 2.71
203 204 4.037222 TCTTAGCATGGTCTCCCACATTA 58.963 43.478 0.00 0.00 45.65 1.90
204 205 4.660303 TCTTAGCATGGTCTCCCACATTAT 59.340 41.667 0.00 0.00 45.65 1.28
205 206 5.843969 TCTTAGCATGGTCTCCCACATTATA 59.156 40.000 0.00 0.00 45.65 0.98
206 207 6.328934 TCTTAGCATGGTCTCCCACATTATAA 59.671 38.462 0.00 0.00 45.65 0.98
207 208 4.978099 AGCATGGTCTCCCACATTATAAG 58.022 43.478 0.00 0.00 45.65 1.73
208 209 4.413520 AGCATGGTCTCCCACATTATAAGT 59.586 41.667 0.00 0.00 45.65 2.24
209 210 5.103940 AGCATGGTCTCCCACATTATAAGTT 60.104 40.000 0.00 0.00 45.65 2.66
210 211 5.594317 GCATGGTCTCCCACATTATAAGTTT 59.406 40.000 0.00 0.00 45.65 2.66
211 212 6.770785 GCATGGTCTCCCACATTATAAGTTTA 59.229 38.462 0.00 0.00 45.65 2.01
212 213 7.448469 GCATGGTCTCCCACATTATAAGTTTAT 59.552 37.037 0.00 0.00 45.65 1.40
215 216 9.841295 TGGTCTCCCACATTATAAGTTTATAAC 57.159 33.333 6.50 0.00 35.89 1.89
235 236 7.931578 ATAACTTGTCCGAATGTATTTTGGA 57.068 32.000 0.00 0.00 44.37 3.53
236 237 5.880054 ACTTGTCCGAATGTATTTTGGAG 57.120 39.130 0.00 0.00 46.68 3.86
237 238 4.700213 ACTTGTCCGAATGTATTTTGGAGG 59.300 41.667 0.00 0.00 46.68 4.30
238 239 3.013921 TGTCCGAATGTATTTTGGAGGC 58.986 45.455 0.00 0.00 46.68 4.70
239 240 3.013921 GTCCGAATGTATTTTGGAGGCA 58.986 45.455 0.00 0.00 46.68 4.75
240 241 3.442273 GTCCGAATGTATTTTGGAGGCAA 59.558 43.478 0.00 0.00 46.68 4.52
241 242 4.097892 GTCCGAATGTATTTTGGAGGCAAT 59.902 41.667 0.00 0.00 46.68 3.56
242 243 4.709397 TCCGAATGTATTTTGGAGGCAATT 59.291 37.500 0.00 0.00 42.13 2.32
243 244 5.186797 TCCGAATGTATTTTGGAGGCAATTT 59.813 36.000 0.00 0.00 42.13 1.82
244 245 5.874261 CCGAATGTATTTTGGAGGCAATTTT 59.126 36.000 0.00 0.00 40.96 1.82
245 246 7.038659 CCGAATGTATTTTGGAGGCAATTTTA 58.961 34.615 0.00 0.00 40.96 1.52
246 247 7.010091 CCGAATGTATTTTGGAGGCAATTTTAC 59.990 37.037 0.00 0.00 40.96 2.01
247 248 7.253618 CGAATGTATTTTGGAGGCAATTTTACG 60.254 37.037 0.00 0.00 0.00 3.18
248 249 5.164954 TGTATTTTGGAGGCAATTTTACGC 58.835 37.500 0.00 0.00 0.00 4.42
249 250 4.535526 ATTTTGGAGGCAATTTTACGCT 57.464 36.364 0.00 0.00 0.00 5.07
250 251 4.329462 TTTTGGAGGCAATTTTACGCTT 57.671 36.364 0.00 0.00 0.00 4.68
251 252 5.455056 TTTTGGAGGCAATTTTACGCTTA 57.545 34.783 0.00 0.00 0.00 3.09
252 253 4.428615 TTGGAGGCAATTTTACGCTTAC 57.571 40.909 0.00 0.00 0.00 2.34
253 254 2.750712 TGGAGGCAATTTTACGCTTACC 59.249 45.455 0.00 0.00 0.00 2.85
254 255 2.750712 GGAGGCAATTTTACGCTTACCA 59.249 45.455 0.00 0.00 0.00 3.25
255 256 3.380320 GGAGGCAATTTTACGCTTACCAT 59.620 43.478 0.00 0.00 0.00 3.55
256 257 4.142249 GGAGGCAATTTTACGCTTACCATT 60.142 41.667 0.00 0.00 0.00 3.16
257 258 5.400066 AGGCAATTTTACGCTTACCATTT 57.600 34.783 0.00 0.00 0.00 2.32
258 259 5.407502 AGGCAATTTTACGCTTACCATTTC 58.592 37.500 0.00 0.00 0.00 2.17
259 260 5.185056 AGGCAATTTTACGCTTACCATTTCT 59.815 36.000 0.00 0.00 0.00 2.52
260 261 5.867174 GGCAATTTTACGCTTACCATTTCTT 59.133 36.000 0.00 0.00 0.00 2.52
261 262 6.183360 GGCAATTTTACGCTTACCATTTCTTG 60.183 38.462 0.00 0.00 0.00 3.02
273 274 4.550076 CCATTTCTTGGTTATGCCCAAA 57.450 40.909 0.00 0.00 43.68 3.28
274 275 4.904241 CCATTTCTTGGTTATGCCCAAAA 58.096 39.130 0.00 0.00 43.68 2.44
275 276 5.499313 CCATTTCTTGGTTATGCCCAAAAT 58.501 37.500 0.00 0.00 43.68 1.82
276 277 5.354792 CCATTTCTTGGTTATGCCCAAAATG 59.645 40.000 11.81 11.81 43.68 2.32
277 278 5.559148 TTTCTTGGTTATGCCCAAAATGT 57.441 34.783 0.00 0.00 43.68 2.71
278 279 4.533919 TCTTGGTTATGCCCAAAATGTG 57.466 40.909 0.00 0.00 43.68 3.21
279 280 2.758736 TGGTTATGCCCAAAATGTGC 57.241 45.000 0.00 0.00 36.04 4.57
280 281 1.973515 TGGTTATGCCCAAAATGTGCA 59.026 42.857 0.00 0.00 39.68 4.57
281 282 2.289320 TGGTTATGCCCAAAATGTGCAC 60.289 45.455 10.75 10.75 37.92 4.57
282 283 1.991965 GTTATGCCCAAAATGTGCACG 59.008 47.619 13.13 0.00 37.92 5.34
283 284 0.108898 TATGCCCAAAATGTGCACGC 60.109 50.000 13.13 8.02 37.92 5.34
284 285 3.105157 GCCCAAAATGTGCACGCG 61.105 61.111 13.13 3.53 0.00 6.01
285 286 3.105157 CCCAAAATGTGCACGCGC 61.105 61.111 13.13 0.00 39.24 6.86
286 287 2.050168 CCAAAATGTGCACGCGCT 60.050 55.556 13.13 0.00 39.64 5.92
287 288 2.366584 CCAAAATGTGCACGCGCTG 61.367 57.895 13.13 5.02 39.64 5.18
295 296 3.798650 GCACGCGCTGCAACCATA 61.799 61.111 22.75 0.00 46.29 2.74
296 297 2.866750 CACGCGCTGCAACCATAA 59.133 55.556 5.73 0.00 0.00 1.90
297 298 1.208870 CACGCGCTGCAACCATAAA 59.791 52.632 5.73 0.00 0.00 1.40
298 299 1.065031 CACGCGCTGCAACCATAAAC 61.065 55.000 5.73 0.00 0.00 2.01
299 300 1.208870 CGCGCTGCAACCATAAACA 59.791 52.632 5.56 0.00 0.00 2.83
300 301 0.794229 CGCGCTGCAACCATAAACAG 60.794 55.000 5.56 0.00 0.00 3.16
316 317 2.876052 CAGCATGTGTGTTGTGTGC 58.124 52.632 0.00 0.00 32.54 4.57
317 318 0.100861 CAGCATGTGTGTTGTGTGCA 59.899 50.000 0.00 0.00 38.23 4.57
318 319 0.816373 AGCATGTGTGTTGTGTGCAA 59.184 45.000 0.00 0.00 38.23 4.08
319 320 1.409790 AGCATGTGTGTTGTGTGCAAT 59.590 42.857 0.00 0.00 38.23 3.56
320 321 2.159071 AGCATGTGTGTTGTGTGCAATT 60.159 40.909 0.00 0.00 38.23 2.32
321 322 2.608546 GCATGTGTGTTGTGTGCAATTT 59.391 40.909 0.00 0.00 36.92 1.82
322 323 3.801050 GCATGTGTGTTGTGTGCAATTTA 59.199 39.130 0.00 0.00 36.92 1.40
323 324 4.448395 GCATGTGTGTTGTGTGCAATTTAT 59.552 37.500 0.00 0.00 36.92 1.40
324 325 5.632764 GCATGTGTGTTGTGTGCAATTTATA 59.367 36.000 0.00 0.00 36.92 0.98
325 326 6.145209 GCATGTGTGTTGTGTGCAATTTATAA 59.855 34.615 0.00 0.00 36.92 0.98
326 327 7.148606 GCATGTGTGTTGTGTGCAATTTATAAT 60.149 33.333 0.00 0.00 36.92 1.28
327 328 9.351570 CATGTGTGTTGTGTGCAATTTATAATA 57.648 29.630 0.00 0.00 36.92 0.98
328 329 9.920133 ATGTGTGTTGTGTGCAATTTATAATAA 57.080 25.926 0.00 0.00 36.92 1.40
329 330 9.186323 TGTGTGTTGTGTGCAATTTATAATAAC 57.814 29.630 0.00 0.00 36.92 1.89
330 331 8.643752 GTGTGTTGTGTGCAATTTATAATAACC 58.356 33.333 0.00 0.00 36.92 2.85
331 332 8.360390 TGTGTTGTGTGCAATTTATAATAACCA 58.640 29.630 0.00 0.00 36.92 3.67
332 333 9.197694 GTGTTGTGTGCAATTTATAATAACCAA 57.802 29.630 0.00 0.00 36.92 3.67
333 334 9.764363 TGTTGTGTGCAATTTATAATAACCAAA 57.236 25.926 0.00 0.00 36.92 3.28
335 336 9.764363 TTGTGTGCAATTTATAATAACCAAACA 57.236 25.926 0.00 0.00 0.00 2.83
336 337 9.935241 TGTGTGCAATTTATAATAACCAAACAT 57.065 25.926 0.00 0.00 0.00 2.71
347 348 6.715347 AATAACCAAACATCTATTCCAGGC 57.285 37.500 0.00 0.00 0.00 4.85
348 349 3.737559 ACCAAACATCTATTCCAGGCA 57.262 42.857 0.00 0.00 0.00 4.75
349 350 4.046286 ACCAAACATCTATTCCAGGCAA 57.954 40.909 0.00 0.00 0.00 4.52
350 351 4.415596 ACCAAACATCTATTCCAGGCAAA 58.584 39.130 0.00 0.00 0.00 3.68
351 352 4.220602 ACCAAACATCTATTCCAGGCAAAC 59.779 41.667 0.00 0.00 0.00 2.93
352 353 4.463891 CCAAACATCTATTCCAGGCAAACT 59.536 41.667 0.00 0.00 0.00 2.66
353 354 5.047092 CCAAACATCTATTCCAGGCAAACTT 60.047 40.000 0.00 0.00 0.00 2.66
354 355 6.458210 CAAACATCTATTCCAGGCAAACTTT 58.542 36.000 0.00 0.00 0.00 2.66
355 356 6.670695 AACATCTATTCCAGGCAAACTTTT 57.329 33.333 0.00 0.00 0.00 2.27
356 357 6.670695 ACATCTATTCCAGGCAAACTTTTT 57.329 33.333 0.00 0.00 0.00 1.94
357 358 6.458210 ACATCTATTCCAGGCAAACTTTTTG 58.542 36.000 0.00 0.00 0.00 2.44
358 359 4.881920 TCTATTCCAGGCAAACTTTTTGC 58.118 39.130 14.01 14.01 44.22 3.68
365 366 2.202295 GCAAACTTTTTGCCGTGAGA 57.798 45.000 11.77 0.00 39.38 3.27
366 367 2.535331 GCAAACTTTTTGCCGTGAGAA 58.465 42.857 11.77 0.00 39.38 2.87
367 368 3.123050 GCAAACTTTTTGCCGTGAGAAT 58.877 40.909 11.77 0.00 39.38 2.40
368 369 3.182372 GCAAACTTTTTGCCGTGAGAATC 59.818 43.478 11.77 0.00 39.38 2.52
369 370 5.261744 GCAAACTTTTTGCCGTGAGAATCA 61.262 41.667 11.77 0.00 40.48 2.57
370 371 7.013986 GCAAACTTTTTGCCGTGAGAATCAG 62.014 44.000 11.77 0.00 42.28 2.90
379 380 3.963733 TGAGAATCAGCCACTTGGG 57.036 52.632 0.00 0.00 42.56 4.12
380 381 1.067295 TGAGAATCAGCCACTTGGGT 58.933 50.000 0.00 0.00 42.56 4.51
388 389 2.452600 AGCCACTTGGGTGAAAAAGA 57.547 45.000 0.00 0.00 45.50 2.52
389 390 2.031870 AGCCACTTGGGTGAAAAAGAC 58.968 47.619 0.00 0.00 45.50 3.01
390 391 1.269051 GCCACTTGGGTGAAAAAGACG 60.269 52.381 0.00 0.00 45.61 4.18
391 392 1.269051 CCACTTGGGTGAAAAAGACGC 60.269 52.381 0.00 0.00 45.61 5.19
392 393 0.661020 ACTTGGGTGAAAAAGACGCG 59.339 50.000 3.53 3.53 0.00 6.01
393 394 0.661020 CTTGGGTGAAAAAGACGCGT 59.339 50.000 13.85 13.85 0.00 6.01
394 395 0.378962 TTGGGTGAAAAAGACGCGTG 59.621 50.000 20.70 0.00 0.00 5.34
395 396 0.462225 TGGGTGAAAAAGACGCGTGA 60.462 50.000 20.70 0.00 0.00 4.35
396 397 0.872388 GGGTGAAAAAGACGCGTGAT 59.128 50.000 20.70 0.73 0.00 3.06
397 398 1.399727 GGGTGAAAAAGACGCGTGATG 60.400 52.381 20.70 0.00 0.00 3.07
398 399 1.263217 GGTGAAAAAGACGCGTGATGT 59.737 47.619 20.70 0.00 0.00 3.06
399 400 2.477375 GGTGAAAAAGACGCGTGATGTA 59.523 45.455 20.70 0.00 0.00 2.29
400 401 3.466836 GTGAAAAAGACGCGTGATGTAC 58.533 45.455 20.70 0.00 0.00 2.90
401 402 3.183775 GTGAAAAAGACGCGTGATGTACT 59.816 43.478 20.70 2.40 0.00 2.73
402 403 3.183574 TGAAAAAGACGCGTGATGTACTG 59.816 43.478 20.70 0.00 0.00 2.74
403 404 1.068474 AAAGACGCGTGATGTACTGC 58.932 50.000 20.70 0.00 0.00 4.40
406 407 4.370494 CGCGTGATGTACTGCGTA 57.630 55.556 0.00 0.00 42.76 4.42
407 408 1.908089 CGCGTGATGTACTGCGTAC 59.092 57.895 0.00 10.61 42.76 3.67
420 421 4.769657 CGTACATGACGCGTGGTA 57.230 55.556 20.70 13.83 46.27 3.25
421 422 3.245443 CGTACATGACGCGTGGTAT 57.755 52.632 20.70 5.30 46.27 2.73
422 423 1.552226 CGTACATGACGCGTGGTATT 58.448 50.000 20.70 0.00 46.27 1.89
423 424 2.718663 CGTACATGACGCGTGGTATTA 58.281 47.619 20.70 0.00 46.27 0.98
424 425 3.107407 CGTACATGACGCGTGGTATTAA 58.893 45.455 20.70 0.00 46.27 1.40
425 426 3.732219 CGTACATGACGCGTGGTATTAAT 59.268 43.478 20.70 0.00 46.27 1.40
426 427 4.207635 CGTACATGACGCGTGGTATTAATT 59.792 41.667 20.70 0.00 46.27 1.40
427 428 5.276489 CGTACATGACGCGTGGTATTAATTT 60.276 40.000 20.70 0.00 46.27 1.82
428 429 4.904116 ACATGACGCGTGGTATTAATTTG 58.096 39.130 20.70 0.00 0.00 2.32
429 430 4.201871 ACATGACGCGTGGTATTAATTTGG 60.202 41.667 20.70 0.00 0.00 3.28
430 431 3.336468 TGACGCGTGGTATTAATTTGGT 58.664 40.909 20.70 0.00 0.00 3.67
431 432 4.502016 TGACGCGTGGTATTAATTTGGTA 58.498 39.130 20.70 0.00 0.00 3.25
432 433 4.567558 TGACGCGTGGTATTAATTTGGTAG 59.432 41.667 20.70 0.00 0.00 3.18
433 434 3.872771 ACGCGTGGTATTAATTTGGTAGG 59.127 43.478 12.93 0.00 0.00 3.18
434 435 3.303526 CGCGTGGTATTAATTTGGTAGGC 60.304 47.826 0.00 0.00 0.00 3.93
435 436 3.881089 GCGTGGTATTAATTTGGTAGGCT 59.119 43.478 0.00 0.00 0.00 4.58
436 437 4.261031 GCGTGGTATTAATTTGGTAGGCTG 60.261 45.833 0.00 0.00 0.00 4.85
437 438 4.274950 CGTGGTATTAATTTGGTAGGCTGG 59.725 45.833 0.00 0.00 0.00 4.85
438 439 4.583073 GTGGTATTAATTTGGTAGGCTGGG 59.417 45.833 0.00 0.00 0.00 4.45
439 440 4.149598 GGTATTAATTTGGTAGGCTGGGG 58.850 47.826 0.00 0.00 0.00 4.96
440 441 2.838637 TTAATTTGGTAGGCTGGGGG 57.161 50.000 0.00 0.00 0.00 5.40
454 455 3.689414 GGGGGTAAAAACGCCTGG 58.311 61.111 10.90 0.00 41.78 4.45
455 456 1.228644 GGGGGTAAAAACGCCTGGT 60.229 57.895 10.90 0.00 41.78 4.00
456 457 1.529152 GGGGGTAAAAACGCCTGGTG 61.529 60.000 5.54 5.54 41.78 4.17
457 458 1.529152 GGGGTAAAAACGCCTGGTGG 61.529 60.000 12.58 0.00 39.35 4.61
467 468 3.732938 CCTGGTGGCTCTAGGCTT 58.267 61.111 6.02 0.00 37.96 4.35
468 469 1.222936 CCTGGTGGCTCTAGGCTTG 59.777 63.158 6.02 0.00 37.96 4.01
469 470 1.451028 CTGGTGGCTCTAGGCTTGC 60.451 63.158 5.07 0.00 41.69 4.01
470 471 2.512515 GGTGGCTCTAGGCTTGCG 60.513 66.667 5.07 0.00 41.69 4.85
471 472 2.579201 GTGGCTCTAGGCTTGCGA 59.421 61.111 5.07 0.00 41.69 5.10
472 473 1.144936 GTGGCTCTAGGCTTGCGAT 59.855 57.895 5.07 0.00 41.69 4.58
473 474 0.878086 GTGGCTCTAGGCTTGCGATC 60.878 60.000 5.07 0.00 41.69 3.69
474 475 1.329913 TGGCTCTAGGCTTGCGATCA 61.330 55.000 5.07 0.00 41.69 2.92
475 476 0.179073 GGCTCTAGGCTTGCGATCAA 60.179 55.000 0.00 0.00 41.46 2.57
476 477 1.656652 GCTCTAGGCTTGCGATCAAA 58.343 50.000 0.00 0.00 38.06 2.69
477 478 2.216898 GCTCTAGGCTTGCGATCAAAT 58.783 47.619 0.00 0.00 38.06 2.32
478 479 2.615912 GCTCTAGGCTTGCGATCAAATT 59.384 45.455 0.00 0.00 38.06 1.82
479 480 3.065925 GCTCTAGGCTTGCGATCAAATTT 59.934 43.478 0.00 0.00 38.06 1.82
480 481 4.439289 GCTCTAGGCTTGCGATCAAATTTT 60.439 41.667 0.00 0.00 38.06 1.82
481 482 5.643379 TCTAGGCTTGCGATCAAATTTTT 57.357 34.783 0.00 0.00 0.00 1.94
482 483 5.401550 TCTAGGCTTGCGATCAAATTTTTG 58.598 37.500 0.00 0.00 39.48 2.44
483 484 3.993920 AGGCTTGCGATCAAATTTTTGT 58.006 36.364 3.18 0.00 39.18 2.83
484 485 4.379652 AGGCTTGCGATCAAATTTTTGTT 58.620 34.783 3.18 0.00 39.18 2.83
485 486 5.537188 AGGCTTGCGATCAAATTTTTGTTA 58.463 33.333 3.18 0.00 39.18 2.41
486 487 5.988561 AGGCTTGCGATCAAATTTTTGTTAA 59.011 32.000 3.18 0.00 39.18 2.01
487 488 6.070829 GGCTTGCGATCAAATTTTTGTTAAC 58.929 36.000 0.00 0.00 39.18 2.01
488 489 5.778345 GCTTGCGATCAAATTTTTGTTAACG 59.222 36.000 0.26 6.35 39.18 3.18
489 490 6.561350 GCTTGCGATCAAATTTTTGTTAACGT 60.561 34.615 0.26 0.00 39.18 3.99
490 491 6.191534 TGCGATCAAATTTTTGTTAACGTG 57.808 33.333 0.26 0.00 39.18 4.49
491 492 5.744345 TGCGATCAAATTTTTGTTAACGTGT 59.256 32.000 0.26 0.00 39.18 4.49
492 493 6.055805 GCGATCAAATTTTTGTTAACGTGTG 58.944 36.000 0.26 0.00 39.18 3.82
493 494 6.291374 GCGATCAAATTTTTGTTAACGTGTGT 60.291 34.615 0.26 0.00 39.18 3.72
494 495 7.048432 CGATCAAATTTTTGTTAACGTGTGTG 58.952 34.615 0.26 0.00 39.18 3.82
495 496 6.083925 TCAAATTTTTGTTAACGTGTGTGC 57.916 33.333 0.26 0.00 39.18 4.57
496 497 5.864474 TCAAATTTTTGTTAACGTGTGTGCT 59.136 32.000 0.26 0.00 39.18 4.40
497 498 5.694674 AATTTTTGTTAACGTGTGTGCTG 57.305 34.783 0.26 0.00 0.00 4.41
498 499 4.421033 TTTTTGTTAACGTGTGTGCTGA 57.579 36.364 0.26 0.00 0.00 4.26
499 500 4.421033 TTTTGTTAACGTGTGTGCTGAA 57.579 36.364 0.26 0.00 0.00 3.02
500 501 4.624336 TTTGTTAACGTGTGTGCTGAAT 57.376 36.364 0.26 0.00 0.00 2.57
501 502 4.624336 TTGTTAACGTGTGTGCTGAATT 57.376 36.364 0.26 0.00 0.00 2.17
502 503 4.203950 TGTTAACGTGTGTGCTGAATTC 57.796 40.909 0.00 0.00 0.00 2.17
503 504 3.874543 TGTTAACGTGTGTGCTGAATTCT 59.125 39.130 7.05 0.00 0.00 2.40
504 505 4.334203 TGTTAACGTGTGTGCTGAATTCTT 59.666 37.500 7.05 0.00 0.00 2.52
505 506 3.338818 AACGTGTGTGCTGAATTCTTG 57.661 42.857 7.05 1.00 0.00 3.02
506 507 1.603802 ACGTGTGTGCTGAATTCTTGG 59.396 47.619 7.05 0.00 0.00 3.61
507 508 1.872952 CGTGTGTGCTGAATTCTTGGA 59.127 47.619 7.05 0.00 0.00 3.53
508 509 2.485426 CGTGTGTGCTGAATTCTTGGAT 59.515 45.455 7.05 0.00 0.00 3.41
509 510 3.668757 CGTGTGTGCTGAATTCTTGGATG 60.669 47.826 7.05 0.00 0.00 3.51
510 511 2.229543 TGTGTGCTGAATTCTTGGATGC 59.770 45.455 7.05 2.75 0.00 3.91
511 512 1.469703 TGTGCTGAATTCTTGGATGCG 59.530 47.619 7.05 0.00 0.00 4.73
512 513 1.097232 TGCTGAATTCTTGGATGCGG 58.903 50.000 7.05 0.00 0.00 5.69
513 514 1.098050 GCTGAATTCTTGGATGCGGT 58.902 50.000 7.05 0.00 0.00 5.68
514 515 1.474077 GCTGAATTCTTGGATGCGGTT 59.526 47.619 7.05 0.00 0.00 4.44
515 516 2.733227 GCTGAATTCTTGGATGCGGTTG 60.733 50.000 7.05 0.00 0.00 3.77
516 517 1.818060 TGAATTCTTGGATGCGGTTGG 59.182 47.619 7.05 0.00 0.00 3.77
517 518 1.134946 GAATTCTTGGATGCGGTTGGG 59.865 52.381 0.00 0.00 0.00 4.12
518 519 0.039618 ATTCTTGGATGCGGTTGGGT 59.960 50.000 0.00 0.00 0.00 4.51
519 520 0.893270 TTCTTGGATGCGGTTGGGTG 60.893 55.000 0.00 0.00 0.00 4.61
520 521 2.988684 TTGGATGCGGTTGGGTGC 60.989 61.111 0.00 0.00 0.00 5.01
539 540 2.774439 CGGTTAGCATTATTGGGTGC 57.226 50.000 0.00 0.00 41.57 5.01
540 541 2.020720 CGGTTAGCATTATTGGGTGCA 58.979 47.619 0.00 0.00 43.63 4.57
541 542 2.223479 CGGTTAGCATTATTGGGTGCAC 60.223 50.000 8.80 8.80 43.63 4.57
579 580 2.231478 TCACGTTGAAAAGTTTGCCCAA 59.769 40.909 0.00 0.00 0.00 4.12
586 587 2.452600 AAAGTTTGCCCAACCAGAGA 57.547 45.000 0.00 0.00 35.77 3.10
591 592 1.701031 TTGCCCAACCAGAGACCGAA 61.701 55.000 0.00 0.00 0.00 4.30
598 599 2.049156 CAGAGACCGAAGCGTGCA 60.049 61.111 0.00 0.00 0.00 4.57
607 608 2.486203 ACCGAAGCGTGCATTAATTTGA 59.514 40.909 0.00 0.00 0.00 2.69
608 609 2.845967 CCGAAGCGTGCATTAATTTGAC 59.154 45.455 0.00 0.00 0.00 3.18
645 650 1.131771 GATGATCGCAGCGATTTCGA 58.868 50.000 30.30 15.44 47.00 3.71
654 659 1.393539 CAGCGATTTCGACGTGGATTT 59.606 47.619 0.00 0.00 43.02 2.17
666 671 3.081804 ACGTGGATTTGGGACATTCTTC 58.918 45.455 0.00 0.00 39.30 2.87
684 689 1.865865 TCTGGTTCTGTTGTCGCTTC 58.134 50.000 0.00 0.00 0.00 3.86
710 715 3.140814 GATTTGACTGGGCCCGCC 61.141 66.667 19.37 9.24 0.00 6.13
727 732 1.731093 CCGGTTTTGCGTGGTTTCT 59.269 52.632 0.00 0.00 0.00 2.52
734 739 0.107410 TTGCGTGGTTTCTGTGGACT 60.107 50.000 0.00 0.00 0.00 3.85
757 762 7.239438 ACTCTTCCAAATACTCCTATATCGGA 58.761 38.462 0.00 0.00 0.00 4.55
767 772 2.029020 TCCTATATCGGAGTGTGCATGC 60.029 50.000 11.82 11.82 0.00 4.06
775 780 2.977456 GTGTGCATGCGTGTCCCA 60.977 61.111 14.09 0.00 0.00 4.37
786 791 0.955178 CGTGTCCCAGATAGATCGCT 59.045 55.000 0.00 0.00 0.00 4.93
788 793 2.750166 CGTGTCCCAGATAGATCGCTAT 59.250 50.000 0.00 0.00 40.00 2.97
824 829 1.303398 TCCGCGTGTCCTTCTCTCT 60.303 57.895 4.92 0.00 0.00 3.10
840 847 3.036819 CTCTCTGTGGATGGAAGGATCA 58.963 50.000 0.00 0.00 0.00 2.92
850 857 1.902508 TGGAAGGATCACGAGAAGCTT 59.097 47.619 0.00 0.00 0.00 3.74
864 871 2.028930 AGAAGCTTCGTGGTTTCTCGAT 60.029 45.455 20.43 0.00 38.44 3.59
883 890 3.365291 CTGTGCCGCCTACCGCTTA 62.365 63.158 0.00 0.00 35.03 3.09
922 929 4.764336 CGCCGCTCAACCGTCGTA 62.764 66.667 0.00 0.00 0.00 3.43
982 989 4.129737 CGACCATGCCCGTCGTCT 62.130 66.667 12.97 0.00 46.17 4.18
998 1005 3.215568 CTGCCACAACCGTGCCAA 61.216 61.111 0.00 0.00 42.17 4.52
1010 1017 4.587520 TGCCAAGATGGGACTCCT 57.412 55.556 0.00 0.00 38.19 3.69
1062 1076 4.637489 CTCTGGCTCCGATCGGCG 62.637 72.222 29.62 24.65 40.47 6.46
1064 1078 3.983494 CTGGCTCCGATCGGCGAT 61.983 66.667 29.62 24.26 44.57 4.58
1065 1079 3.905705 CTGGCTCCGATCGGCGATC 62.906 68.421 33.90 33.90 44.57 3.69
1139 1153 3.952675 CAGCAGCGCAACAACGGT 61.953 61.111 11.47 0.00 46.12 4.83
1166 1180 1.528292 GCAGAGTGGAGTCGTGTCCT 61.528 60.000 7.24 0.00 37.52 3.85
1220 1234 0.179073 CGGCCATGTCGGAAGATTCT 60.179 55.000 2.24 0.00 45.19 2.40
1242 1256 0.396278 GGATTGCCAAAGGGGAGGAG 60.396 60.000 0.00 0.00 40.01 3.69
1243 1257 0.625849 GATTGCCAAAGGGGAGGAGA 59.374 55.000 0.00 0.00 40.01 3.71
1277 1291 3.951037 GACTCTTCAGATGGTGAGAGCTA 59.049 47.826 0.00 0.00 36.21 3.32
1280 1294 3.129462 TCTTCAGATGGTGAGAGCTAACG 59.871 47.826 0.00 0.00 36.21 3.18
1334 1348 2.414559 GCAGCGATAATGCAGTGTGTTT 60.415 45.455 0.00 0.00 43.31 2.83
1335 1349 3.165890 CAGCGATAATGCAGTGTGTTTG 58.834 45.455 0.00 0.00 37.31 2.93
1336 1350 2.813754 AGCGATAATGCAGTGTGTTTGT 59.186 40.909 0.00 0.00 37.31 2.83
1337 1351 3.253188 AGCGATAATGCAGTGTGTTTGTT 59.747 39.130 0.00 0.00 37.31 2.83
1346 1360 2.908009 CAGTGTGTTTGTTGTTCGTGTG 59.092 45.455 0.00 0.00 0.00 3.82
1361 1375 1.613255 CGTGTGCAAATAAGGGGGTCT 60.613 52.381 0.00 0.00 0.00 3.85
1397 1411 1.071239 CAGAAGCAACACAAGACGACG 60.071 52.381 0.00 0.00 0.00 5.12
1488 1504 0.313987 TTCACTGCTCGATGTCGTGT 59.686 50.000 2.04 0.00 40.80 4.49
1553 1598 1.738099 CAGTGCAGGTACAGGTCGC 60.738 63.158 0.00 0.00 0.00 5.19
1579 1624 2.699954 GTCGTGGTCTGGACATTTGAT 58.300 47.619 3.10 0.00 33.41 2.57
1587 1632 3.862267 GTCTGGACATTTGATCAGTCTCG 59.138 47.826 11.95 5.42 32.98 4.04
1600 1645 0.396001 AGTCTCGAGCTAACCTCCCC 60.396 60.000 7.81 0.00 37.27 4.81
1620 1666 3.131755 CCCTTGGATTCAATTCTTGCTCC 59.868 47.826 0.00 0.00 34.62 4.70
1629 1675 3.509967 TCAATTCTTGCTCCTCGAGTACA 59.490 43.478 12.31 3.35 31.39 2.90
1662 1708 2.159198 CCATGATTCTTTTTCCGGCCTG 60.159 50.000 0.00 0.00 0.00 4.85
1690 1736 1.422024 GCCTAGAAATCCTCCTTCCCC 59.578 57.143 0.00 0.00 0.00 4.81
1763 1866 3.011517 AGGAGGTGGCGGCAGAAT 61.012 61.111 13.91 0.00 0.00 2.40
1837 1940 1.005037 ATGCCGTTTGAGCTCGACA 60.005 52.632 17.11 7.48 0.00 4.35
1842 1945 1.954146 GTTTGAGCTCGACACCGCA 60.954 57.895 9.64 0.00 35.37 5.69
1845 1948 2.355837 GAGCTCGACACCGCAACA 60.356 61.111 0.00 0.00 35.37 3.33
1846 1949 1.954146 GAGCTCGACACCGCAACAA 60.954 57.895 0.00 0.00 35.37 2.83
1956 2062 5.162991 CCCTATATGAATTCAGGTTTGGGGA 60.163 44.000 14.54 0.00 0.00 4.81
1992 2098 7.790823 ATCCTGTTTGAAACTTGGAATTTTG 57.209 32.000 20.48 0.00 37.89 2.44
2040 2146 2.682856 GGTCGCCTGCATATTTTTCTGA 59.317 45.455 0.00 0.00 0.00 3.27
2087 2193 1.144708 TGGAATGCAGGGAGAACACAA 59.855 47.619 0.00 0.00 0.00 3.33
2134 2240 2.405618 AGATAGGCCATACTGCAGGA 57.594 50.000 19.93 10.84 0.00 3.86
2150 2256 4.711399 TGCAGGAAGAATGTGGATCTATG 58.289 43.478 0.00 0.00 0.00 2.23
2154 2260 5.008415 CAGGAAGAATGTGGATCTATGTTGC 59.992 44.000 0.00 0.00 0.00 4.17
2158 2264 5.609423 AGAATGTGGATCTATGTTGCTCTC 58.391 41.667 0.00 0.00 0.00 3.20
2159 2265 5.366186 AGAATGTGGATCTATGTTGCTCTCT 59.634 40.000 0.00 0.00 0.00 3.10
2181 2287 9.656323 TCTCTCTACTTTTATTAGATAGGGCAA 57.344 33.333 0.00 0.00 0.00 4.52
2292 2586 2.681848 CAACCAAGATTAGAGCTGCCTG 59.318 50.000 0.00 0.00 0.00 4.85
2416 2710 5.812652 TGAATGTACGTGTTTGAACCTTTC 58.187 37.500 0.00 0.00 0.00 2.62
2430 2724 3.515602 ACCTTTCTGCAGAACCTGAAT 57.484 42.857 28.46 8.62 32.44 2.57
2433 2727 3.688673 CCTTTCTGCAGAACCTGAATCTC 59.311 47.826 28.46 0.00 32.44 2.75
2440 2734 3.564644 GCAGAACCTGAATCTCATGATGG 59.435 47.826 0.00 0.00 32.44 3.51
2465 2759 2.246067 AGAGAGGGAAGTATGCCAGAGA 59.754 50.000 0.00 0.00 32.29 3.10
2478 2772 6.780031 AGTATGCCAGAGATAGACATGTTAGT 59.220 38.462 0.00 0.00 0.00 2.24
2540 2834 6.747414 TGGCCTGTTACATATTCTACTCAT 57.253 37.500 3.32 0.00 0.00 2.90
2544 2838 6.014156 GCCTGTTACATATTCTACTCATCCCT 60.014 42.308 0.00 0.00 0.00 4.20
2545 2839 7.607250 CCTGTTACATATTCTACTCATCCCTC 58.393 42.308 0.00 0.00 0.00 4.30
2546 2840 7.310113 CCTGTTACATATTCTACTCATCCCTCC 60.310 44.444 0.00 0.00 0.00 4.30
2607 2901 7.110155 GTCATTAAATAAGAGGTGGAAGGTCA 58.890 38.462 0.00 0.00 0.00 4.02
2638 2934 3.829601 AGACTCCTTGTGAAGACCACTAG 59.170 47.826 0.00 0.00 45.86 2.57
2668 2964 1.730612 CGGACTTCTTTTTAGCCGGTC 59.269 52.381 1.90 0.00 35.42 4.79
2783 3091 4.974438 ACACCAAGCGGGGAGGGA 62.974 66.667 3.55 0.00 38.36 4.20
2808 3116 1.267806 GCCCAACACATGTCAGTTCTG 59.732 52.381 0.00 0.00 0.00 3.02
2836 3144 6.122277 TCCTTCTGGGCACTATTTCAATAAG 58.878 40.000 0.00 0.00 34.39 1.73
2935 3243 2.231716 AAATTAGTTGGCCCTGGTCC 57.768 50.000 0.00 0.00 0.00 4.46
2938 3246 0.544833 TTAGTTGGCCCTGGTCCGTA 60.545 55.000 0.00 0.00 0.00 4.02
2939 3247 0.974010 TAGTTGGCCCTGGTCCGTAG 60.974 60.000 0.00 0.00 0.00 3.51
3014 3322 2.162681 GCAGTGTGCCACCTAAATTCT 58.837 47.619 0.00 0.00 37.42 2.40
3016 3324 3.612479 GCAGTGTGCCACCTAAATTCTTG 60.612 47.826 0.00 0.00 37.42 3.02
3017 3325 3.057315 CAGTGTGCCACCTAAATTCTTGG 60.057 47.826 0.00 0.00 34.49 3.61
3018 3326 3.153919 GTGTGCCACCTAAATTCTTGGA 58.846 45.455 0.00 0.00 0.00 3.53
3029 4797 8.734386 CACCTAAATTCTTGGATGATATTAGGC 58.266 37.037 7.88 0.00 37.72 3.93
3053 4821 6.292757 GCAGTGACTATGCATGTTATCTTGAG 60.293 42.308 10.16 0.00 43.31 3.02
3155 4925 6.650427 AAATGTCTGAGAAAAACTTACCCC 57.350 37.500 0.00 0.00 0.00 4.95
3179 4949 1.863454 GAGATGCATCTAAGTGCCACG 59.137 52.381 28.78 0.00 44.43 4.94
3184 4954 1.002366 CATCTAAGTGCCACGTGAGC 58.998 55.000 19.30 18.80 0.00 4.26
3204 4974 7.488150 CGTGAGCTTATATTTATATCAGCCGAA 59.512 37.037 10.72 0.00 39.59 4.30
3272 5042 9.214957 AGTTTTATTAACTCATTGACATCGTCA 57.785 29.630 0.00 0.00 41.09 4.35
3325 5096 2.586425 GCTACTCTCCAGATCTGAGCT 58.414 52.381 24.62 9.83 0.00 4.09
3462 5233 1.281867 TCCTGCTTCCTGTGGTTATGG 59.718 52.381 0.00 0.00 0.00 2.74
3496 5267 7.177568 TGCTTTGTGGCTATTGGTTAAAGAATA 59.822 33.333 0.00 0.00 0.00 1.75
3525 5298 8.990163 AGTCAATTTACCTAAGTTTTCTTCCA 57.010 30.769 0.00 0.00 40.91 3.53
3658 5431 5.127194 TGGAGGTGTGATGTAGACAAGTATC 59.873 44.000 0.00 0.00 0.00 2.24
3670 5443 2.292569 GACAAGTATCCAGCCATGCATG 59.707 50.000 20.19 20.19 0.00 4.06
3679 5452 3.761752 TCCAGCCATGCATGATGAATATG 59.238 43.478 28.31 13.69 33.31 1.78
3686 5459 8.758829 AGCCATGCATGATGAATATGATTAATT 58.241 29.630 28.31 0.00 33.31 1.40
3746 5519 7.436933 TCTGGCTCATAATGTATAGAGTTGTG 58.563 38.462 0.00 0.00 0.00 3.33
3786 5584 7.930217 TGCTAAATATTCTGTTGCAAGTATCC 58.070 34.615 0.00 0.00 0.00 2.59
3833 5631 8.826765 AGAAGAGGTTCCTACAAAATCAGATTA 58.173 33.333 0.00 0.00 32.48 1.75
3834 5632 9.103861 GAAGAGGTTCCTACAAAATCAGATTAG 57.896 37.037 0.00 0.00 0.00 1.73
3835 5633 8.380742 AGAGGTTCCTACAAAATCAGATTAGA 57.619 34.615 0.00 0.00 0.00 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.087639 AGACACTTATTTTGAGACGAAGAGAG 58.912 38.462 0.00 0.00 0.00 3.20
2 3 7.644986 AAGACACTTATTTTGAGACGAAGAG 57.355 36.000 0.00 0.00 0.00 2.85
3 4 8.975439 GTTAAGACACTTATTTTGAGACGAAGA 58.025 33.333 0.00 0.00 0.00 2.87
4 5 7.945178 CGTTAAGACACTTATTTTGAGACGAAG 59.055 37.037 0.00 0.00 0.00 3.79
5 6 7.436080 ACGTTAAGACACTTATTTTGAGACGAA 59.564 33.333 12.92 0.00 0.00 3.85
6 7 6.919662 ACGTTAAGACACTTATTTTGAGACGA 59.080 34.615 12.92 0.00 0.00 4.20
7 8 7.096353 TGACGTTAAGACACTTATTTTGAGACG 60.096 37.037 0.00 0.00 0.00 4.18
8 9 8.068893 TGACGTTAAGACACTTATTTTGAGAC 57.931 34.615 0.00 0.00 0.00 3.36
9 10 7.924412 ACTGACGTTAAGACACTTATTTTGAGA 59.076 33.333 6.24 0.00 0.00 3.27
10 11 8.073355 ACTGACGTTAAGACACTTATTTTGAG 57.927 34.615 6.24 0.00 0.00 3.02
11 12 9.701098 ATACTGACGTTAAGACACTTATTTTGA 57.299 29.630 6.24 0.00 0.00 2.69
18 19 8.975439 CAAAGTTATACTGACGTTAAGACACTT 58.025 33.333 6.24 5.64 0.00 3.16
19 20 8.139989 ACAAAGTTATACTGACGTTAAGACACT 58.860 33.333 6.24 0.78 0.00 3.55
20 21 8.290663 ACAAAGTTATACTGACGTTAAGACAC 57.709 34.615 6.24 0.00 0.00 3.67
21 22 9.398170 GTACAAAGTTATACTGACGTTAAGACA 57.602 33.333 6.24 0.00 0.00 3.41
22 23 9.617975 AGTACAAAGTTATACTGACGTTAAGAC 57.382 33.333 6.24 0.00 30.34 3.01
27 28 9.971922 ACTTTAGTACAAAGTTATACTGACGTT 57.028 29.630 14.04 0.00 37.18 3.99
28 29 9.971922 AACTTTAGTACAAAGTTATACTGACGT 57.028 29.630 23.13 0.00 45.51 4.34
63 64 9.665264 CCTTTGTCTTAAAATAAGTGTCTCAAC 57.335 33.333 0.00 0.00 0.00 3.18
64 65 9.621629 TCCTTTGTCTTAAAATAAGTGTCTCAA 57.378 29.630 0.00 0.00 0.00 3.02
65 66 9.621629 TTCCTTTGTCTTAAAATAAGTGTCTCA 57.378 29.630 0.00 0.00 0.00 3.27
67 68 9.628500 ACTTCCTTTGTCTTAAAATAAGTGTCT 57.372 29.630 0.00 0.00 30.25 3.41
79 80 9.567776 TGTTTGATTCATACTTCCTTTGTCTTA 57.432 29.630 8.42 0.00 0.00 2.10
80 81 8.463930 TGTTTGATTCATACTTCCTTTGTCTT 57.536 30.769 8.42 0.00 0.00 3.01
81 82 8.463930 TTGTTTGATTCATACTTCCTTTGTCT 57.536 30.769 8.42 0.00 0.00 3.41
82 83 9.346725 GATTGTTTGATTCATACTTCCTTTGTC 57.653 33.333 8.42 0.00 0.00 3.18
83 84 9.082313 AGATTGTTTGATTCATACTTCCTTTGT 57.918 29.630 8.42 0.00 0.00 2.83
87 88 9.965902 AGTTAGATTGTTTGATTCATACTTCCT 57.034 29.630 8.42 5.45 0.00 3.36
138 139 9.539194 AGGATTTTCATAGGACTTTTGAAGAAT 57.461 29.630 0.00 0.00 31.54 2.40
139 140 8.940397 AGGATTTTCATAGGACTTTTGAAGAA 57.060 30.769 0.00 0.00 31.54 2.52
140 141 8.940397 AAGGATTTTCATAGGACTTTTGAAGA 57.060 30.769 0.00 0.00 31.54 2.87
141 142 9.415544 CAAAGGATTTTCATAGGACTTTTGAAG 57.584 33.333 0.00 0.00 35.03 3.02
142 143 9.142014 TCAAAGGATTTTCATAGGACTTTTGAA 57.858 29.630 0.00 0.00 35.03 2.69
143 144 8.704849 TCAAAGGATTTTCATAGGACTTTTGA 57.295 30.769 0.00 0.00 35.03 2.69
144 145 9.196552 GTTCAAAGGATTTTCATAGGACTTTTG 57.803 33.333 0.00 0.00 35.03 2.44
145 146 8.367911 GGTTCAAAGGATTTTCATAGGACTTTT 58.632 33.333 0.00 0.00 35.03 2.27
146 147 7.508977 TGGTTCAAAGGATTTTCATAGGACTTT 59.491 33.333 0.00 0.00 35.03 2.66
147 148 7.010160 TGGTTCAAAGGATTTTCATAGGACTT 58.990 34.615 0.00 0.00 35.03 3.01
148 149 6.552008 TGGTTCAAAGGATTTTCATAGGACT 58.448 36.000 0.00 0.00 35.03 3.85
149 150 6.834168 TGGTTCAAAGGATTTTCATAGGAC 57.166 37.500 0.00 0.00 35.03 3.85
150 151 7.466746 CTTGGTTCAAAGGATTTTCATAGGA 57.533 36.000 0.00 0.00 35.03 2.94
162 163 0.113190 AGGGCTCCTTGGTTCAAAGG 59.887 55.000 0.00 0.00 46.99 3.11
163 164 1.074566 AGAGGGCTCCTTGGTTCAAAG 59.925 52.381 0.00 0.00 31.76 2.77
164 165 1.149101 AGAGGGCTCCTTGGTTCAAA 58.851 50.000 0.00 0.00 31.76 2.69
165 166 1.149101 AAGAGGGCTCCTTGGTTCAA 58.851 50.000 0.00 0.00 31.76 2.69
166 167 1.909302 CTAAGAGGGCTCCTTGGTTCA 59.091 52.381 0.00 0.00 31.76 3.18
167 168 1.407575 GCTAAGAGGGCTCCTTGGTTC 60.408 57.143 0.00 0.00 31.76 3.62
168 169 0.621082 GCTAAGAGGGCTCCTTGGTT 59.379 55.000 0.00 0.00 31.76 3.67
169 170 0.547712 TGCTAAGAGGGCTCCTTGGT 60.548 55.000 0.00 0.00 31.76 3.67
170 171 0.842635 ATGCTAAGAGGGCTCCTTGG 59.157 55.000 0.00 0.00 31.76 3.61
171 172 1.476471 CCATGCTAAGAGGGCTCCTTG 60.476 57.143 0.00 0.00 31.76 3.61
172 173 0.842635 CCATGCTAAGAGGGCTCCTT 59.157 55.000 0.00 0.00 31.76 3.36
173 174 0.327000 ACCATGCTAAGAGGGCTCCT 60.327 55.000 0.00 0.00 36.03 3.69
174 175 0.107643 GACCATGCTAAGAGGGCTCC 59.892 60.000 0.00 0.00 0.00 4.70
175 176 1.127343 AGACCATGCTAAGAGGGCTC 58.873 55.000 0.00 0.00 35.26 4.70
176 177 1.127343 GAGACCATGCTAAGAGGGCT 58.873 55.000 0.00 0.00 45.55 5.19
177 178 0.107643 GGAGACCATGCTAAGAGGGC 59.892 60.000 0.00 0.00 0.00 5.19
189 190 9.841295 GTTATAAACTTATAATGTGGGAGACCA 57.159 33.333 5.45 0.00 45.97 4.02
209 210 9.451002 TCCAAAATACATTCGGACAAGTTATAA 57.549 29.630 0.00 0.00 0.00 0.98
210 211 9.104965 CTCCAAAATACATTCGGACAAGTTATA 57.895 33.333 0.00 0.00 0.00 0.98
211 212 7.067008 CCTCCAAAATACATTCGGACAAGTTAT 59.933 37.037 0.00 0.00 0.00 1.89
212 213 6.373216 CCTCCAAAATACATTCGGACAAGTTA 59.627 38.462 0.00 0.00 0.00 2.24
213 214 5.183140 CCTCCAAAATACATTCGGACAAGTT 59.817 40.000 0.00 0.00 0.00 2.66
214 215 4.700213 CCTCCAAAATACATTCGGACAAGT 59.300 41.667 0.00 0.00 0.00 3.16
215 216 4.438744 GCCTCCAAAATACATTCGGACAAG 60.439 45.833 0.00 0.00 0.00 3.16
216 217 3.442273 GCCTCCAAAATACATTCGGACAA 59.558 43.478 0.00 0.00 0.00 3.18
217 218 3.013921 GCCTCCAAAATACATTCGGACA 58.986 45.455 0.00 0.00 0.00 4.02
218 219 3.013921 TGCCTCCAAAATACATTCGGAC 58.986 45.455 0.00 0.00 0.00 4.79
219 220 3.358111 TGCCTCCAAAATACATTCGGA 57.642 42.857 0.00 0.00 0.00 4.55
220 221 4.654091 ATTGCCTCCAAAATACATTCGG 57.346 40.909 0.00 0.00 34.05 4.30
221 222 6.966435 AAAATTGCCTCCAAAATACATTCG 57.034 33.333 0.00 0.00 34.05 3.34
222 223 7.464045 GCGTAAAATTGCCTCCAAAATACATTC 60.464 37.037 0.00 0.00 34.05 2.67
223 224 6.312672 GCGTAAAATTGCCTCCAAAATACATT 59.687 34.615 0.00 0.00 34.05 2.71
224 225 5.810074 GCGTAAAATTGCCTCCAAAATACAT 59.190 36.000 0.00 0.00 34.05 2.29
225 226 5.047660 AGCGTAAAATTGCCTCCAAAATACA 60.048 36.000 0.00 0.00 34.05 2.29
226 227 5.407502 AGCGTAAAATTGCCTCCAAAATAC 58.592 37.500 0.00 0.00 34.05 1.89
227 228 5.652994 AGCGTAAAATTGCCTCCAAAATA 57.347 34.783 0.00 0.00 34.05 1.40
228 229 4.535526 AGCGTAAAATTGCCTCCAAAAT 57.464 36.364 0.00 0.00 34.05 1.82
229 230 4.329462 AAGCGTAAAATTGCCTCCAAAA 57.671 36.364 0.00 0.00 34.05 2.44
230 231 4.321378 GGTAAGCGTAAAATTGCCTCCAAA 60.321 41.667 0.00 0.00 34.05 3.28
231 232 3.191791 GGTAAGCGTAAAATTGCCTCCAA 59.808 43.478 0.00 0.00 35.01 3.53
232 233 2.750712 GGTAAGCGTAAAATTGCCTCCA 59.249 45.455 0.00 0.00 0.00 3.86
233 234 2.750712 TGGTAAGCGTAAAATTGCCTCC 59.249 45.455 0.00 0.00 32.90 4.30
234 235 4.632538 ATGGTAAGCGTAAAATTGCCTC 57.367 40.909 0.00 0.00 32.90 4.70
235 236 5.185056 AGAAATGGTAAGCGTAAAATTGCCT 59.815 36.000 0.00 0.00 32.90 4.75
236 237 5.407502 AGAAATGGTAAGCGTAAAATTGCC 58.592 37.500 0.00 0.00 0.00 4.52
237 238 6.183360 CCAAGAAATGGTAAGCGTAAAATTGC 60.183 38.462 0.00 0.00 44.85 3.56
238 239 7.276953 CCAAGAAATGGTAAGCGTAAAATTG 57.723 36.000 0.00 0.00 44.85 2.32
268 269 3.105157 GCGCGTGCACATTTTGGG 61.105 61.111 17.66 9.41 42.15 4.12
269 270 2.050168 AGCGCGTGCACATTTTGG 60.050 55.556 24.79 0.00 46.23 3.28
270 271 3.140149 CAGCGCGTGCACATTTTG 58.860 55.556 24.79 7.53 46.23 2.44
279 280 1.065031 GTTTATGGTTGCAGCGCGTG 61.065 55.000 8.43 6.12 0.00 5.34
280 281 1.209127 GTTTATGGTTGCAGCGCGT 59.791 52.632 8.43 0.00 0.00 6.01
281 282 0.794229 CTGTTTATGGTTGCAGCGCG 60.794 55.000 0.00 0.00 0.00 6.86
282 283 1.072666 GCTGTTTATGGTTGCAGCGC 61.073 55.000 0.00 0.00 43.60 5.92
283 284 3.020102 GCTGTTTATGGTTGCAGCG 57.980 52.632 0.00 0.00 43.60 5.18
285 286 3.247442 CACATGCTGTTTATGGTTGCAG 58.753 45.455 0.00 0.00 37.07 4.41
286 287 2.627221 ACACATGCTGTTTATGGTTGCA 59.373 40.909 0.00 0.00 38.05 4.08
287 288 2.988493 CACACATGCTGTTTATGGTTGC 59.012 45.455 0.00 0.00 0.00 4.17
288 289 4.241590 ACACACATGCTGTTTATGGTTG 57.758 40.909 0.00 0.00 0.00 3.77
289 290 4.099266 ACAACACACATGCTGTTTATGGTT 59.901 37.500 6.62 2.41 30.81 3.67
290 291 3.636300 ACAACACACATGCTGTTTATGGT 59.364 39.130 6.62 0.80 30.81 3.55
291 292 3.982701 CACAACACACATGCTGTTTATGG 59.017 43.478 6.62 0.28 32.72 2.74
292 293 4.441744 CACACAACACACATGCTGTTTATG 59.558 41.667 6.62 10.00 32.72 1.90
293 294 4.609947 CACACAACACACATGCTGTTTAT 58.390 39.130 6.62 0.00 32.72 1.40
294 295 3.733380 GCACACAACACACATGCTGTTTA 60.733 43.478 6.62 0.00 32.72 2.01
295 296 2.878580 CACACAACACACATGCTGTTT 58.121 42.857 6.62 0.00 32.72 2.83
296 297 1.469595 GCACACAACACACATGCTGTT 60.470 47.619 3.96 3.96 32.72 3.16
297 298 0.101040 GCACACAACACACATGCTGT 59.899 50.000 0.00 0.00 35.47 4.40
298 299 0.100861 TGCACACAACACACATGCTG 59.899 50.000 0.00 0.00 37.20 4.41
299 300 0.816373 TTGCACACAACACACATGCT 59.184 45.000 0.00 0.00 37.20 3.79
300 301 1.855513 ATTGCACACAACACACATGC 58.144 45.000 0.00 0.00 38.99 4.06
301 302 7.634809 TTATAAATTGCACACAACACACATG 57.365 32.000 0.00 0.00 38.99 3.21
302 303 9.920133 TTATTATAAATTGCACACAACACACAT 57.080 25.926 0.00 0.00 38.99 3.21
303 304 9.186323 GTTATTATAAATTGCACACAACACACA 57.814 29.630 0.00 0.00 38.99 3.72
304 305 8.643752 GGTTATTATAAATTGCACACAACACAC 58.356 33.333 0.00 0.00 38.99 3.82
305 306 8.360390 TGGTTATTATAAATTGCACACAACACA 58.640 29.630 0.00 0.00 38.99 3.72
306 307 8.749841 TGGTTATTATAAATTGCACACAACAC 57.250 30.769 0.00 0.00 38.99 3.32
307 308 9.764363 TTTGGTTATTATAAATTGCACACAACA 57.236 25.926 0.00 0.00 38.99 3.33
309 310 9.764363 TGTTTGGTTATTATAAATTGCACACAA 57.236 25.926 0.00 0.00 40.87 3.33
310 311 9.935241 ATGTTTGGTTATTATAAATTGCACACA 57.065 25.926 0.00 0.00 0.00 3.72
321 322 9.515226 GCCTGGAATAGATGTTTGGTTATTATA 57.485 33.333 0.00 0.00 0.00 0.98
322 323 8.004215 TGCCTGGAATAGATGTTTGGTTATTAT 58.996 33.333 0.00 0.00 0.00 1.28
323 324 7.350382 TGCCTGGAATAGATGTTTGGTTATTA 58.650 34.615 0.00 0.00 0.00 0.98
324 325 6.194235 TGCCTGGAATAGATGTTTGGTTATT 58.806 36.000 0.00 0.00 0.00 1.40
325 326 5.765510 TGCCTGGAATAGATGTTTGGTTAT 58.234 37.500 0.00 0.00 0.00 1.89
326 327 5.186256 TGCCTGGAATAGATGTTTGGTTA 57.814 39.130 0.00 0.00 0.00 2.85
327 328 4.046286 TGCCTGGAATAGATGTTTGGTT 57.954 40.909 0.00 0.00 0.00 3.67
328 329 3.737559 TGCCTGGAATAGATGTTTGGT 57.262 42.857 0.00 0.00 0.00 3.67
329 330 4.463891 AGTTTGCCTGGAATAGATGTTTGG 59.536 41.667 0.00 0.00 0.00 3.28
330 331 5.649782 AGTTTGCCTGGAATAGATGTTTG 57.350 39.130 0.00 0.00 0.00 2.93
331 332 6.670695 AAAGTTTGCCTGGAATAGATGTTT 57.329 33.333 0.00 0.00 0.00 2.83
332 333 6.670695 AAAAGTTTGCCTGGAATAGATGTT 57.329 33.333 0.00 0.00 0.00 2.71
333 334 6.458210 CAAAAAGTTTGCCTGGAATAGATGT 58.542 36.000 0.00 0.00 0.00 3.06
334 335 5.349543 GCAAAAAGTTTGCCTGGAATAGATG 59.650 40.000 13.49 0.00 39.38 2.90
335 336 5.482006 GCAAAAAGTTTGCCTGGAATAGAT 58.518 37.500 13.49 0.00 39.38 1.98
336 337 4.881920 GCAAAAAGTTTGCCTGGAATAGA 58.118 39.130 13.49 0.00 39.38 1.98
346 347 2.202295 TCTCACGGCAAAAAGTTTGC 57.798 45.000 15.64 15.64 44.22 3.68
347 348 4.358851 TGATTCTCACGGCAAAAAGTTTG 58.641 39.130 0.00 0.00 0.00 2.93
348 349 4.610945 CTGATTCTCACGGCAAAAAGTTT 58.389 39.130 0.00 0.00 0.00 2.66
349 350 3.550842 GCTGATTCTCACGGCAAAAAGTT 60.551 43.478 0.00 0.00 39.19 2.66
350 351 2.030805 GCTGATTCTCACGGCAAAAAGT 60.031 45.455 0.00 0.00 39.19 2.66
351 352 2.589014 GCTGATTCTCACGGCAAAAAG 58.411 47.619 0.00 0.00 39.19 2.27
352 353 1.269448 GGCTGATTCTCACGGCAAAAA 59.731 47.619 0.00 0.00 40.89 1.94
353 354 0.881118 GGCTGATTCTCACGGCAAAA 59.119 50.000 0.00 0.00 40.89 2.44
354 355 0.250684 TGGCTGATTCTCACGGCAAA 60.251 50.000 0.00 0.00 40.89 3.68
355 356 0.955428 GTGGCTGATTCTCACGGCAA 60.955 55.000 0.00 0.00 40.89 4.52
356 357 1.375908 GTGGCTGATTCTCACGGCA 60.376 57.895 0.00 0.00 40.89 5.69
357 358 0.674895 AAGTGGCTGATTCTCACGGC 60.675 55.000 0.00 0.00 36.60 5.68
358 359 1.081892 CAAGTGGCTGATTCTCACGG 58.918 55.000 0.00 0.00 36.60 4.94
359 360 1.081892 CCAAGTGGCTGATTCTCACG 58.918 55.000 0.00 0.00 36.60 4.35
360 361 1.271597 ACCCAAGTGGCTGATTCTCAC 60.272 52.381 0.00 0.00 37.83 3.51
361 362 1.067295 ACCCAAGTGGCTGATTCTCA 58.933 50.000 0.00 0.00 37.83 3.27
362 363 1.003580 TCACCCAAGTGGCTGATTCTC 59.996 52.381 0.00 0.00 44.64 2.87
363 364 1.067295 TCACCCAAGTGGCTGATTCT 58.933 50.000 0.00 0.00 44.64 2.40
364 365 1.909700 TTCACCCAAGTGGCTGATTC 58.090 50.000 0.00 0.00 44.64 2.52
365 366 2.380064 TTTCACCCAAGTGGCTGATT 57.620 45.000 0.00 0.00 44.64 2.57
366 367 2.380064 TTTTCACCCAAGTGGCTGAT 57.620 45.000 0.00 0.00 44.64 2.90
367 368 2.031120 CTTTTTCACCCAAGTGGCTGA 58.969 47.619 0.00 0.00 44.64 4.26
368 369 2.031120 TCTTTTTCACCCAAGTGGCTG 58.969 47.619 0.00 0.00 44.64 4.85
369 370 2.031870 GTCTTTTTCACCCAAGTGGCT 58.968 47.619 0.00 0.00 44.64 4.75
370 371 1.269051 CGTCTTTTTCACCCAAGTGGC 60.269 52.381 0.00 0.00 44.64 5.01
371 372 1.269051 GCGTCTTTTTCACCCAAGTGG 60.269 52.381 0.00 0.00 44.64 4.00
372 373 1.596954 CGCGTCTTTTTCACCCAAGTG 60.597 52.381 0.00 0.00 46.00 3.16
373 374 0.661020 CGCGTCTTTTTCACCCAAGT 59.339 50.000 0.00 0.00 0.00 3.16
374 375 0.661020 ACGCGTCTTTTTCACCCAAG 59.339 50.000 5.58 0.00 0.00 3.61
375 376 0.378962 CACGCGTCTTTTTCACCCAA 59.621 50.000 9.86 0.00 0.00 4.12
376 377 0.462225 TCACGCGTCTTTTTCACCCA 60.462 50.000 9.86 0.00 0.00 4.51
377 378 0.872388 ATCACGCGTCTTTTTCACCC 59.128 50.000 9.86 0.00 0.00 4.61
378 379 1.263217 ACATCACGCGTCTTTTTCACC 59.737 47.619 9.86 0.00 0.00 4.02
379 380 2.663279 ACATCACGCGTCTTTTTCAC 57.337 45.000 9.86 0.00 0.00 3.18
380 381 3.183574 CAGTACATCACGCGTCTTTTTCA 59.816 43.478 9.86 0.00 0.00 2.69
381 382 3.722123 CAGTACATCACGCGTCTTTTTC 58.278 45.455 9.86 0.00 0.00 2.29
382 383 2.096417 GCAGTACATCACGCGTCTTTTT 60.096 45.455 9.86 0.00 0.00 1.94
383 384 1.459592 GCAGTACATCACGCGTCTTTT 59.540 47.619 9.86 0.00 0.00 2.27
384 385 1.068474 GCAGTACATCACGCGTCTTT 58.932 50.000 9.86 0.00 0.00 2.52
385 386 1.071019 CGCAGTACATCACGCGTCTT 61.071 55.000 9.86 0.00 41.76 3.01
386 387 1.514228 CGCAGTACATCACGCGTCT 60.514 57.895 9.86 0.00 41.76 4.18
387 388 2.987593 CGCAGTACATCACGCGTC 59.012 61.111 9.86 0.00 41.76 5.19
404 405 5.646467 AATTAATACCACGCGTCATGTAC 57.354 39.130 9.86 0.00 0.00 2.90
405 406 5.006844 CCAAATTAATACCACGCGTCATGTA 59.993 40.000 9.86 12.11 0.00 2.29
406 407 4.201871 CCAAATTAATACCACGCGTCATGT 60.202 41.667 9.86 9.99 0.00 3.21
407 408 4.201871 ACCAAATTAATACCACGCGTCATG 60.202 41.667 9.86 3.11 0.00 3.07
408 409 3.942748 ACCAAATTAATACCACGCGTCAT 59.057 39.130 9.86 2.08 0.00 3.06
409 410 3.336468 ACCAAATTAATACCACGCGTCA 58.664 40.909 9.86 0.00 0.00 4.35
410 411 4.025480 CCTACCAAATTAATACCACGCGTC 60.025 45.833 9.86 0.00 0.00 5.19
411 412 3.872771 CCTACCAAATTAATACCACGCGT 59.127 43.478 5.58 5.58 0.00 6.01
412 413 3.303526 GCCTACCAAATTAATACCACGCG 60.304 47.826 3.53 3.53 0.00 6.01
413 414 3.881089 AGCCTACCAAATTAATACCACGC 59.119 43.478 0.00 0.00 0.00 5.34
414 415 4.274950 CCAGCCTACCAAATTAATACCACG 59.725 45.833 0.00 0.00 0.00 4.94
415 416 4.583073 CCCAGCCTACCAAATTAATACCAC 59.417 45.833 0.00 0.00 0.00 4.16
416 417 4.386986 CCCCAGCCTACCAAATTAATACCA 60.387 45.833 0.00 0.00 0.00 3.25
417 418 4.149598 CCCCAGCCTACCAAATTAATACC 58.850 47.826 0.00 0.00 0.00 2.73
418 419 4.149598 CCCCCAGCCTACCAAATTAATAC 58.850 47.826 0.00 0.00 0.00 1.89
419 420 4.463050 CCCCCAGCCTACCAAATTAATA 57.537 45.455 0.00 0.00 0.00 0.98
420 421 3.328535 CCCCCAGCCTACCAAATTAAT 57.671 47.619 0.00 0.00 0.00 1.40
421 422 2.838637 CCCCCAGCCTACCAAATTAA 57.161 50.000 0.00 0.00 0.00 1.40
437 438 1.228644 ACCAGGCGTTTTTACCCCC 60.229 57.895 0.00 0.00 0.00 5.40
438 439 1.529152 CCACCAGGCGTTTTTACCCC 61.529 60.000 0.00 0.00 0.00 4.95
439 440 1.961378 CCACCAGGCGTTTTTACCC 59.039 57.895 0.00 0.00 0.00 3.69
450 451 1.222936 CAAGCCTAGAGCCACCAGG 59.777 63.158 0.00 0.00 45.47 4.45
451 452 1.451028 GCAAGCCTAGAGCCACCAG 60.451 63.158 0.00 0.00 45.47 4.00
452 453 2.671070 GCAAGCCTAGAGCCACCA 59.329 61.111 0.00 0.00 45.47 4.17
453 454 2.317149 ATCGCAAGCCTAGAGCCACC 62.317 60.000 0.00 0.00 45.47 4.61
454 455 0.878086 GATCGCAAGCCTAGAGCCAC 60.878 60.000 0.00 0.00 45.47 5.01
455 456 1.329913 TGATCGCAAGCCTAGAGCCA 61.330 55.000 0.00 0.00 45.47 4.75
456 457 0.179073 TTGATCGCAAGCCTAGAGCC 60.179 55.000 0.00 0.00 45.47 4.70
457 458 1.656652 TTTGATCGCAAGCCTAGAGC 58.343 50.000 0.00 0.00 44.25 4.09
458 459 4.889832 AAATTTGATCGCAAGCCTAGAG 57.110 40.909 0.00 0.00 35.04 2.43
459 460 5.048083 ACAAAAATTTGATCGCAAGCCTAGA 60.048 36.000 12.54 0.00 40.55 2.43
460 461 5.163513 ACAAAAATTTGATCGCAAGCCTAG 58.836 37.500 12.54 0.00 40.55 3.02
461 462 5.132897 ACAAAAATTTGATCGCAAGCCTA 57.867 34.783 12.54 0.00 40.55 3.93
462 463 3.993920 ACAAAAATTTGATCGCAAGCCT 58.006 36.364 12.54 0.00 40.55 4.58
463 464 4.730600 AACAAAAATTTGATCGCAAGCC 57.269 36.364 12.54 0.00 40.55 4.35
464 465 5.778345 CGTTAACAAAAATTTGATCGCAAGC 59.222 36.000 12.54 0.00 40.55 4.01
465 466 6.780496 CACGTTAACAAAAATTTGATCGCAAG 59.220 34.615 12.54 1.42 40.55 4.01
466 467 6.253727 ACACGTTAACAAAAATTTGATCGCAA 59.746 30.769 12.54 0.00 40.55 4.85
467 468 5.744345 ACACGTTAACAAAAATTTGATCGCA 59.256 32.000 12.54 0.00 40.55 5.10
468 469 6.055805 CACACGTTAACAAAAATTTGATCGC 58.944 36.000 12.54 0.57 40.55 4.58
469 470 7.048432 CACACACGTTAACAAAAATTTGATCG 58.952 34.615 12.54 11.87 40.55 3.69
470 471 6.838806 GCACACACGTTAACAAAAATTTGATC 59.161 34.615 12.54 0.00 40.55 2.92
471 472 6.533367 AGCACACACGTTAACAAAAATTTGAT 59.467 30.769 12.54 3.58 40.55 2.57
472 473 5.864474 AGCACACACGTTAACAAAAATTTGA 59.136 32.000 12.54 0.00 40.55 2.69
473 474 5.950924 CAGCACACACGTTAACAAAAATTTG 59.049 36.000 6.39 4.40 43.62 2.32
474 475 5.864474 TCAGCACACACGTTAACAAAAATTT 59.136 32.000 6.39 0.00 0.00 1.82
475 476 5.403246 TCAGCACACACGTTAACAAAAATT 58.597 33.333 6.39 0.00 0.00 1.82
476 477 4.987832 TCAGCACACACGTTAACAAAAAT 58.012 34.783 6.39 0.00 0.00 1.82
477 478 4.421033 TCAGCACACACGTTAACAAAAA 57.579 36.364 6.39 0.00 0.00 1.94
478 479 4.421033 TTCAGCACACACGTTAACAAAA 57.579 36.364 6.39 0.00 0.00 2.44
479 480 4.624336 ATTCAGCACACACGTTAACAAA 57.376 36.364 6.39 0.00 0.00 2.83
480 481 4.334203 AGAATTCAGCACACACGTTAACAA 59.666 37.500 8.44 0.00 0.00 2.83
481 482 3.874543 AGAATTCAGCACACACGTTAACA 59.125 39.130 8.44 0.00 0.00 2.41
482 483 4.468095 AGAATTCAGCACACACGTTAAC 57.532 40.909 8.44 0.00 0.00 2.01
483 484 4.260990 CCAAGAATTCAGCACACACGTTAA 60.261 41.667 8.44 0.00 0.00 2.01
484 485 3.249799 CCAAGAATTCAGCACACACGTTA 59.750 43.478 8.44 0.00 0.00 3.18
485 486 2.033299 CCAAGAATTCAGCACACACGTT 59.967 45.455 8.44 0.00 0.00 3.99
486 487 1.603802 CCAAGAATTCAGCACACACGT 59.396 47.619 8.44 0.00 0.00 4.49
487 488 1.872952 TCCAAGAATTCAGCACACACG 59.127 47.619 8.44 0.00 0.00 4.49
488 489 3.829948 CATCCAAGAATTCAGCACACAC 58.170 45.455 8.44 0.00 0.00 3.82
489 490 2.229543 GCATCCAAGAATTCAGCACACA 59.770 45.455 8.44 0.00 0.00 3.72
490 491 2.730090 CGCATCCAAGAATTCAGCACAC 60.730 50.000 8.44 0.00 0.00 3.82
491 492 1.469703 CGCATCCAAGAATTCAGCACA 59.530 47.619 8.44 0.00 0.00 4.57
492 493 1.202222 CCGCATCCAAGAATTCAGCAC 60.202 52.381 8.44 0.00 0.00 4.40
493 494 1.097232 CCGCATCCAAGAATTCAGCA 58.903 50.000 8.44 0.00 0.00 4.41
494 495 1.098050 ACCGCATCCAAGAATTCAGC 58.902 50.000 8.44 1.13 0.00 4.26
495 496 2.159338 CCAACCGCATCCAAGAATTCAG 60.159 50.000 8.44 0.00 0.00 3.02
496 497 1.818060 CCAACCGCATCCAAGAATTCA 59.182 47.619 8.44 0.00 0.00 2.57
497 498 1.134946 CCCAACCGCATCCAAGAATTC 59.865 52.381 0.00 0.00 0.00 2.17
498 499 1.185315 CCCAACCGCATCCAAGAATT 58.815 50.000 0.00 0.00 0.00 2.17
499 500 0.039618 ACCCAACCGCATCCAAGAAT 59.960 50.000 0.00 0.00 0.00 2.40
500 501 0.893270 CACCCAACCGCATCCAAGAA 60.893 55.000 0.00 0.00 0.00 2.52
501 502 1.303236 CACCCAACCGCATCCAAGA 60.303 57.895 0.00 0.00 0.00 3.02
502 503 2.993471 GCACCCAACCGCATCCAAG 61.993 63.158 0.00 0.00 0.00 3.61
503 504 2.988684 GCACCCAACCGCATCCAA 60.989 61.111 0.00 0.00 0.00 3.53
507 508 3.554696 TAACCGCACCCAACCGCAT 62.555 57.895 0.00 0.00 0.00 4.73
508 509 4.251771 TAACCGCACCCAACCGCA 62.252 61.111 0.00 0.00 0.00 5.69
509 510 3.428282 CTAACCGCACCCAACCGC 61.428 66.667 0.00 0.00 0.00 5.68
510 511 3.428282 GCTAACCGCACCCAACCG 61.428 66.667 0.00 0.00 38.92 4.44
511 512 2.281900 TGCTAACCGCACCCAACC 60.282 61.111 0.00 0.00 45.47 3.77
519 520 1.269051 GCACCCAATAATGCTAACCGC 60.269 52.381 0.00 0.00 38.84 5.68
520 521 2.020720 TGCACCCAATAATGCTAACCG 58.979 47.619 0.00 0.00 42.55 4.44
521 522 2.223479 CGTGCACCCAATAATGCTAACC 60.223 50.000 12.15 0.00 42.55 2.85
522 523 2.422127 ACGTGCACCCAATAATGCTAAC 59.578 45.455 12.15 0.00 42.55 2.34
528 529 1.319614 GCCCACGTGCACCCAATAAT 61.320 55.000 10.91 0.00 0.00 1.28
529 530 1.974343 GCCCACGTGCACCCAATAA 60.974 57.895 10.91 0.00 0.00 1.40
553 554 3.241520 GCAAACTTTTCAACGTGAAACCG 60.242 43.478 11.15 8.85 45.03 4.44
554 555 3.061563 GGCAAACTTTTCAACGTGAAACC 59.938 43.478 11.15 6.35 45.03 3.27
579 580 2.651361 CACGCTTCGGTCTCTGGT 59.349 61.111 0.00 0.00 0.00 4.00
586 587 2.486203 TCAAATTAATGCACGCTTCGGT 59.514 40.909 0.00 0.00 0.00 4.69
591 592 2.225491 ACGTGTCAAATTAATGCACGCT 59.775 40.909 22.91 13.91 45.68 5.07
598 599 3.245122 ACCCCTCCACGTGTCAAATTAAT 60.245 43.478 15.65 0.00 0.00 1.40
607 608 1.768888 AGGAAACCCCTCCACGTGT 60.769 57.895 15.65 0.00 43.31 4.49
608 609 1.302511 CAGGAAACCCCTCCACGTG 60.303 63.158 9.08 9.08 45.60 4.49
645 650 2.879103 AGAATGTCCCAAATCCACGT 57.121 45.000 0.00 0.00 0.00 4.49
654 659 2.711009 ACAGAACCAGAAGAATGTCCCA 59.289 45.455 0.00 0.00 0.00 4.37
666 671 0.508641 CGAAGCGACAACAGAACCAG 59.491 55.000 0.00 0.00 0.00 4.00
684 689 1.135603 CCCAGTCAAATCACATGCACG 60.136 52.381 0.00 0.00 0.00 5.34
710 715 0.099791 ACAGAAACCACGCAAAACCG 59.900 50.000 0.00 0.00 0.00 4.44
746 751 2.029020 GCATGCACACTCCGATATAGGA 60.029 50.000 14.21 4.35 38.80 2.94
747 752 2.341257 GCATGCACACTCCGATATAGG 58.659 52.381 14.21 0.00 0.00 2.57
748 753 1.988467 CGCATGCACACTCCGATATAG 59.012 52.381 19.57 0.00 0.00 1.31
749 754 1.339929 ACGCATGCACACTCCGATATA 59.660 47.619 19.57 0.00 0.00 0.86
750 755 0.104855 ACGCATGCACACTCCGATAT 59.895 50.000 19.57 0.00 0.00 1.63
757 762 2.669569 GGGACACGCATGCACACT 60.670 61.111 19.57 0.00 0.00 3.55
767 772 0.955178 AGCGATCTATCTGGGACACG 59.045 55.000 0.00 0.00 0.00 4.49
786 791 4.208746 GGAGGAAACGGAGAGAAGAGATA 58.791 47.826 0.00 0.00 0.00 1.98
788 793 2.448453 GGAGGAAACGGAGAGAAGAGA 58.552 52.381 0.00 0.00 0.00 3.10
789 794 1.133407 CGGAGGAAACGGAGAGAAGAG 59.867 57.143 0.00 0.00 0.00 2.85
793 798 2.697761 CGCGGAGGAAACGGAGAGA 61.698 63.158 0.00 0.00 0.00 3.10
824 829 1.482182 CTCGTGATCCTTCCATCCACA 59.518 52.381 0.00 0.00 0.00 4.17
850 857 1.668919 GCACAGATCGAGAAACCACGA 60.669 52.381 0.00 0.00 42.49 4.35
905 912 4.764336 TACGACGGTTGAGCGGCG 62.764 66.667 26.57 26.57 0.00 6.46
998 1005 0.043940 AAGCAGGAGGAGTCCCATCT 59.956 55.000 5.25 0.00 45.26 2.90
1034 1041 4.416738 GCCAGAGCAGGGTGTCCC 62.417 72.222 0.00 0.00 45.90 4.46
1062 1076 2.297597 CTCCTGAACCCCATAGTCGATC 59.702 54.545 0.00 0.00 0.00 3.69
1063 1077 2.320781 CTCCTGAACCCCATAGTCGAT 58.679 52.381 0.00 0.00 0.00 3.59
1064 1078 1.776662 CTCCTGAACCCCATAGTCGA 58.223 55.000 0.00 0.00 0.00 4.20
1065 1079 0.105039 GCTCCTGAACCCCATAGTCG 59.895 60.000 0.00 0.00 0.00 4.18
1066 1080 1.139853 CTGCTCCTGAACCCCATAGTC 59.860 57.143 0.00 0.00 0.00 2.59
1067 1081 1.207791 CTGCTCCTGAACCCCATAGT 58.792 55.000 0.00 0.00 0.00 2.12
1068 1082 0.179034 GCTGCTCCTGAACCCCATAG 60.179 60.000 0.00 0.00 0.00 2.23
1069 1083 0.913934 TGCTGCTCCTGAACCCCATA 60.914 55.000 0.00 0.00 0.00 2.74
1070 1084 2.207501 CTGCTGCTCCTGAACCCCAT 62.208 60.000 0.00 0.00 0.00 4.00
1139 1153 4.631740 TCCACTCTGCCGGGTCCA 62.632 66.667 2.18 0.00 0.00 4.02
1166 1180 4.441695 CTGAGCCCGCTTCTCGCA 62.442 66.667 0.00 0.00 39.08 5.10
1198 1212 2.329539 ATCTTCCGACATGGCCGCAT 62.330 55.000 0.00 0.00 37.80 4.73
1220 1234 0.251742 CTCCCCTTTGGCAATCCACA 60.252 55.000 0.00 0.00 43.33 4.17
1237 1251 0.923358 TCCTCTCCTCCTGTCTCCTC 59.077 60.000 0.00 0.00 0.00 3.71
1242 1256 2.291282 TGAAGAGTCCTCTCCTCCTGTC 60.291 54.545 0.00 0.00 41.26 3.51
1243 1257 1.713647 TGAAGAGTCCTCTCCTCCTGT 59.286 52.381 0.00 0.00 41.26 4.00
1307 1321 2.246739 GCATTATCGCTGCTCGCCA 61.247 57.895 0.00 0.00 36.68 5.69
1323 1337 1.537638 ACGAACAACAAACACACTGCA 59.462 42.857 0.00 0.00 0.00 4.41
1334 1348 3.243234 CCCTTATTTGCACACGAACAACA 60.243 43.478 0.00 0.00 0.00 3.33
1335 1349 3.305110 CCCTTATTTGCACACGAACAAC 58.695 45.455 0.00 0.00 0.00 3.32
1336 1350 2.294791 CCCCTTATTTGCACACGAACAA 59.705 45.455 0.00 0.00 0.00 2.83
1337 1351 1.883275 CCCCTTATTTGCACACGAACA 59.117 47.619 0.00 0.00 0.00 3.18
1346 1360 1.478105 CTTGCAGACCCCCTTATTTGC 59.522 52.381 0.00 0.00 0.00 3.68
1361 1375 1.216444 CTGCTCGCTACTCCTTGCA 59.784 57.895 0.00 0.00 0.00 4.08
1488 1504 2.404923 TCCAGGACAAACAACGACAA 57.595 45.000 0.00 0.00 0.00 3.18
1565 1610 3.862267 CGAGACTGATCAAATGTCCAGAC 59.138 47.826 9.34 0.00 0.00 3.51
1579 1624 1.682394 GGGAGGTTAGCTCGAGACTGA 60.682 57.143 18.75 6.93 0.00 3.41
1587 1632 3.007581 TCCAAGGGGAGGTTAGCTC 57.992 57.895 2.39 2.39 38.64 4.09
1620 1666 5.962433 TGGGAAAAATCTAGTGTACTCGAG 58.038 41.667 11.84 11.84 0.00 4.04
1662 1708 3.260632 GGAGGATTTCTAGGCTGATCTCC 59.739 52.174 0.00 0.45 0.00 3.71
1690 1736 7.621832 TGAAATAAACAATCAGAACAAAGCG 57.378 32.000 0.00 0.00 0.00 4.68
1763 1866 0.108851 CATCCACCGTCATCGTCACA 60.109 55.000 0.00 0.00 35.01 3.58
1842 1945 1.893808 CACAGAGGCCGCAGTTGTT 60.894 57.895 9.88 0.00 0.00 2.83
1845 1948 2.281070 CACACAGAGGCCGCAGTT 60.281 61.111 9.88 0.00 0.00 3.16
1846 1949 3.521529 GACACACAGAGGCCGCAGT 62.522 63.158 9.88 3.34 0.00 4.40
1924 2030 5.327732 CTGAATTCATATAGGGTTGGCCAT 58.672 41.667 6.09 0.00 36.17 4.40
1956 2062 7.395489 AGTTTCAAACAGGATATGAAGCAAGAT 59.605 33.333 2.41 0.00 36.93 2.40
1992 2098 5.470845 AAGTAACGCTATGCTTGACAATC 57.529 39.130 0.00 0.00 0.00 2.67
2040 2146 2.697751 TGTGTTTTGCCTTGTAAGCCAT 59.302 40.909 0.00 0.00 0.00 4.40
2112 2218 4.429505 TCCTGCAGTATGGCCTATCTAAT 58.570 43.478 13.81 0.00 35.86 1.73
2134 2240 5.999044 AGAGCAACATAGATCCACATTCTT 58.001 37.500 0.00 0.00 0.00 2.52
2154 2260 9.303116 TGCCCTATCTAATAAAAGTAGAGAGAG 57.697 37.037 7.41 0.00 38.60 3.20
2241 2347 4.990526 AGGGCCAATTCTAATGGTATCAG 58.009 43.478 6.18 0.00 40.23 2.90
2292 2586 1.301716 TTCTTGCACAGACCGAGGC 60.302 57.895 0.00 0.00 0.00 4.70
2416 2710 3.870274 TCATGAGATTCAGGTTCTGCAG 58.130 45.455 7.63 7.63 29.15 4.41
2430 2724 3.205282 TCCCTCTCTGTACCATCATGAGA 59.795 47.826 0.09 0.00 33.45 3.27
2433 2727 3.708631 ACTTCCCTCTCTGTACCATCATG 59.291 47.826 0.00 0.00 0.00 3.07
2440 2734 3.031736 TGGCATACTTCCCTCTCTGTAC 58.968 50.000 0.00 0.00 0.00 2.90
2449 2743 3.898123 TGTCTATCTCTGGCATACTTCCC 59.102 47.826 0.00 0.00 0.00 3.97
2454 2748 6.987386 ACTAACATGTCTATCTCTGGCATAC 58.013 40.000 0.00 0.00 0.00 2.39
2513 2807 7.715249 TGAGTAGAATATGTAACAGGCCAATTC 59.285 37.037 5.01 1.11 0.00 2.17
2522 2816 6.497259 GGGAGGGATGAGTAGAATATGTAACA 59.503 42.308 0.00 0.00 0.00 2.41
2540 2834 2.857998 GATTGTGGGGGAGGGAGGGA 62.858 65.000 0.00 0.00 0.00 4.20
2544 2838 0.554865 AATGGATTGTGGGGGAGGGA 60.555 55.000 0.00 0.00 0.00 4.20
2545 2839 0.397535 CAATGGATTGTGGGGGAGGG 60.398 60.000 0.00 0.00 33.22 4.30
2546 2840 0.397535 CCAATGGATTGTGGGGGAGG 60.398 60.000 0.00 0.00 36.06 4.30
2638 2934 3.643159 AAAGAAGTCCGATTGTTTGGC 57.357 42.857 0.00 0.00 0.00 4.52
2783 3091 0.250684 TGACATGTGTTGGGCGATGT 60.251 50.000 1.15 0.00 0.00 3.06
2808 3116 4.141620 TGAAATAGTGCCCAGAAGGATCTC 60.142 45.833 0.00 0.00 38.24 2.75
2935 3243 1.067212 CTTAGGTGCCTAGTGCCTACG 59.933 57.143 0.00 0.62 40.16 3.51
2938 3246 0.905357 CACTTAGGTGCCTAGTGCCT 59.095 55.000 11.81 2.30 40.16 4.75
2939 3247 0.902531 TCACTTAGGTGCCTAGTGCC 59.097 55.000 16.18 0.00 42.72 5.01
2940 3248 1.134670 CCTCACTTAGGTGCCTAGTGC 60.135 57.143 16.18 0.00 42.72 4.40
2941 3249 2.457598 TCCTCACTTAGGTGCCTAGTG 58.542 52.381 15.44 15.44 46.62 2.74
2942 3250 2.832733 GTTCCTCACTTAGGTGCCTAGT 59.167 50.000 0.00 0.00 46.62 2.57
2943 3251 2.168728 GGTTCCTCACTTAGGTGCCTAG 59.831 54.545 0.00 0.00 46.62 3.02
2944 3252 2.185387 GGTTCCTCACTTAGGTGCCTA 58.815 52.381 0.00 0.00 46.62 3.93
2945 3253 0.984995 GGTTCCTCACTTAGGTGCCT 59.015 55.000 0.00 0.00 46.62 4.75
3014 3322 5.894298 AGTCACTGCCTAATATCATCCAA 57.106 39.130 0.00 0.00 0.00 3.53
3016 3324 5.814705 GCATAGTCACTGCCTAATATCATCC 59.185 44.000 0.00 0.00 33.44 3.51
3017 3325 6.401394 TGCATAGTCACTGCCTAATATCATC 58.599 40.000 0.00 0.00 38.89 2.92
3018 3326 6.364568 TGCATAGTCACTGCCTAATATCAT 57.635 37.500 0.00 0.00 38.89 2.45
3029 4797 6.202379 CCTCAAGATAACATGCATAGTCACTG 59.798 42.308 0.00 0.00 0.00 3.66
3110 4879 8.686334 CATTTACAGTTGGCACCTATATTCTTT 58.314 33.333 0.00 0.00 0.00 2.52
3117 4886 4.943705 CAGACATTTACAGTTGGCACCTAT 59.056 41.667 0.00 0.00 0.00 2.57
3179 4949 8.596380 GTTCGGCTGATATAAATATAAGCTCAC 58.404 37.037 15.80 8.72 43.75 3.51
3286 5056 9.817809 AGAGTAGCGAATGAGATACAAAATAAA 57.182 29.630 0.00 0.00 35.64 1.40
3290 5060 6.127451 TGGAGAGTAGCGAATGAGATACAAAA 60.127 38.462 0.00 0.00 35.64 2.44
3304 5074 1.266718 GCTCAGATCTGGAGAGTAGCG 59.733 57.143 22.42 2.14 34.24 4.26
3462 5233 5.750067 CCAATAGCCACAAAGCAACATATTC 59.250 40.000 0.00 0.00 34.23 1.75
3510 5281 7.951591 TGAATTTTCCTGGAAGAAAACTTAGG 58.048 34.615 9.42 0.00 45.72 2.69
3518 5291 7.557875 AATCCAATGAATTTTCCTGGAAGAA 57.442 32.000 9.42 7.70 39.88 2.52
3519 5292 7.557875 AAATCCAATGAATTTTCCTGGAAGA 57.442 32.000 9.42 5.61 39.88 2.87
3525 5298 9.387257 GCTATTCAAAATCCAATGAATTTTCCT 57.613 29.630 6.34 0.00 42.12 3.36
3573 5346 9.458374 CGTATACATTACATGACAACTGACATA 57.542 33.333 0.00 0.00 0.00 2.29
3574 5347 7.979537 ACGTATACATTACATGACAACTGACAT 59.020 33.333 0.00 0.00 0.00 3.06
3575 5348 7.317390 ACGTATACATTACATGACAACTGACA 58.683 34.615 0.00 0.00 0.00 3.58
3658 5431 3.761752 TCATATTCATCATGCATGGCTGG 59.238 43.478 25.97 13.03 32.64 4.85
3686 5459 4.102054 ACGACCCAAAAGGAGAGAAACTTA 59.898 41.667 0.00 0.00 39.89 2.24
3703 5476 2.040178 AGAGGGATGATTGTACGACCC 58.960 52.381 0.00 0.00 37.79 4.46
3786 5584 4.445052 TCTTGCGCAACATCAATTTTCTTG 59.555 37.500 21.02 4.21 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.