Multiple sequence alignment - TraesCS5A01G149400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G149400 chr5A 100.000 5013 0 0 1 5013 327431436 327436448 0.000000e+00 9258.0
1 TraesCS5A01G149400 chr5A 98.824 170 1 1 1804 1973 168438164 168437996 8.160000e-78 302.0
2 TraesCS5A01G149400 chr5A 84.967 153 14 8 176 321 297697691 297697541 4.040000e-31 147.0
3 TraesCS5A01G149400 chr5A 98.507 67 0 1 4404 4470 13889618 13889553 3.170000e-22 117.0
4 TraesCS5A01G149400 chr5B 94.774 2430 99 18 1971 4388 276657897 276660310 0.000000e+00 3759.0
5 TraesCS5A01G149400 chr5B 92.499 1813 113 9 1 1811 276656108 276657899 0.000000e+00 2573.0
6 TraesCS5A01G149400 chr5B 96.889 450 13 1 4565 5013 276660318 276660767 0.000000e+00 752.0
7 TraesCS5A01G149400 chr5B 97.143 70 1 1 4401 4470 515818847 515818779 3.170000e-22 117.0
8 TraesCS5A01G149400 chr5D 94.600 2426 86 11 1971 4388 229188900 229186512 0.000000e+00 3712.0
9 TraesCS5A01G149400 chr5D 94.484 1813 78 9 1 1811 229190690 229188898 0.000000e+00 2774.0
10 TraesCS5A01G149400 chr5D 95.768 449 19 0 4565 5013 229186504 229186056 0.000000e+00 725.0
11 TraesCS5A01G149400 chr5D 77.311 238 49 3 3250 3483 229187567 229187331 8.750000e-28 135.0
12 TraesCS5A01G149400 chr5D 97.222 72 0 2 4405 4474 385791057 385791128 2.450000e-23 121.0
13 TraesCS5A01G149400 chr4A 78.378 555 88 24 2636 3173 454603865 454603326 1.040000e-86 331.0
14 TraesCS5A01G149400 chr4A 95.652 184 8 0 1791 1974 464567416 464567599 3.790000e-76 296.0
15 TraesCS5A01G149400 chr4A 87.209 86 8 3 4386 4470 352494765 352494848 1.490000e-15 95.3
16 TraesCS5A01G149400 chr7B 97.727 176 4 0 1806 1981 730811970 730812145 2.270000e-78 303.0
17 TraesCS5A01G149400 chr7B 91.597 119 7 3 4469 4587 307217770 307217655 1.440000e-35 161.0
18 TraesCS5A01G149400 chr7B 88.372 86 9 1 4386 4470 51618627 51618712 8.880000e-18 102.0
19 TraesCS5A01G149400 chr6B 98.266 173 3 0 1809 1981 52153984 52154156 2.270000e-78 303.0
20 TraesCS5A01G149400 chr6B 90.323 124 9 3 4466 4589 20920486 20920606 5.190000e-35 159.0
21 TraesCS5A01G149400 chr6B 84.211 152 14 8 176 320 203677493 203677345 6.770000e-29 139.0
22 TraesCS5A01G149400 chr6B 92.135 89 1 5 4386 4470 93384729 93384643 2.450000e-23 121.0
23 TraesCS5A01G149400 chr4B 99.398 166 1 0 1810 1975 658178325 658178160 8.160000e-78 302.0
24 TraesCS5A01G149400 chr4B 77.239 536 89 26 2652 3173 181437659 181437143 2.950000e-72 283.0
25 TraesCS5A01G149400 chr4B 95.413 109 4 1 4466 4574 206802684 206802577 6.670000e-39 172.0
26 TraesCS5A01G149400 chr4B 86.275 153 17 4 173 321 305527199 305527047 4.020000e-36 163.0
27 TraesCS5A01G149400 chr4B 91.667 120 7 3 4469 4586 588430908 588430790 4.020000e-36 163.0
28 TraesCS5A01G149400 chr4B 89.231 130 11 3 4469 4596 370882613 370882485 5.190000e-35 159.0
29 TraesCS5A01G149400 chr3A 98.817 169 2 0 1806 1974 36310119 36309951 8.160000e-78 302.0
30 TraesCS5A01G149400 chr3A 89.231 65 6 1 4406 4470 744439292 744439229 4.160000e-11 80.5
31 TraesCS5A01G149400 chr1A 98.817 169 2 0 1810 1978 368368655 368368487 8.160000e-78 302.0
32 TraesCS5A01G149400 chr1A 96.875 96 3 0 4466 4561 363424800 363424895 1.440000e-35 161.0
33 TraesCS5A01G149400 chr2A 95.699 186 4 3 1792 1973 609646512 609646327 3.790000e-76 296.0
34 TraesCS5A01G149400 chr2A 96.133 181 4 3 1793 1973 768613894 768613717 4.910000e-75 292.0
35 TraesCS5A01G149400 chr2A 100.000 96 0 0 4469 4564 286445956 286445861 1.430000e-40 178.0
36 TraesCS5A01G149400 chr2A 84.768 151 19 3 173 320 343451739 343451590 1.120000e-31 148.0
37 TraesCS5A01G149400 chr2A 94.595 74 3 1 4398 4470 623747462 623747535 4.100000e-21 113.0
38 TraesCS5A01G149400 chr4D 83.408 223 35 2 1443 1664 119235269 119235048 6.580000e-49 206.0
39 TraesCS5A01G149400 chr4D 100.000 64 0 0 4407 4470 331632570 331632507 8.820000e-23 119.0
40 TraesCS5A01G149400 chr4D 97.101 69 1 1 4402 4470 478512178 478512245 1.140000e-21 115.0
41 TraesCS5A01G149400 chr2B 96.190 105 4 0 4466 4570 402680734 402680838 6.670000e-39 172.0
42 TraesCS5A01G149400 chr7A 85.256 156 14 8 173 321 66388589 66388742 8.690000e-33 152.0
43 TraesCS5A01G149400 chr7A 84.416 154 15 8 175 321 66398894 66399045 5.230000e-30 143.0
44 TraesCS5A01G149400 chr7A 85.227 88 7 5 4384 4470 271626477 271626559 8.940000e-13 86.1
45 TraesCS5A01G149400 chr3B 85.333 150 18 4 4412 4559 605011126 605010979 8.690000e-33 152.0
46 TraesCS5A01G149400 chrUn 83.871 155 15 9 173 320 39872280 39872129 6.770000e-29 139.0
47 TraesCS5A01G149400 chr1B 97.143 70 1 1 4402 4470 230141376 230141445 3.170000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G149400 chr5A 327431436 327436448 5012 False 9258.000000 9258 100.000000 1 5013 1 chr5A.!!$F1 5012
1 TraesCS5A01G149400 chr5B 276656108 276660767 4659 False 2361.333333 3759 94.720667 1 5013 3 chr5B.!!$F1 5012
2 TraesCS5A01G149400 chr5D 229186056 229190690 4634 True 1836.500000 3712 90.540750 1 5013 4 chr5D.!!$R1 5012
3 TraesCS5A01G149400 chr4A 454603326 454603865 539 True 331.000000 331 78.378000 2636 3173 1 chr4A.!!$R1 537
4 TraesCS5A01G149400 chr4B 181437143 181437659 516 True 283.000000 283 77.239000 2652 3173 1 chr4B.!!$R1 521

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
813 815 0.239347 GCGGATCCATGCTTGTATGC 59.761 55.0 13.41 0.0 0.00 3.14 F
1169 1173 0.175073 GGCGGGATCAGTAAGTTCGT 59.825 55.0 0.00 0.0 0.00 3.85 F
1428 1433 0.729140 CCGTGGTGCGCTTGATTTTC 60.729 55.0 9.73 0.0 39.71 2.29 F
2472 2477 0.035820 TGAACCACGCAATAGGGACC 60.036 55.0 0.00 0.0 0.00 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1958 1963 0.460722 GCTTCTACTCCCTCCGTTCC 59.539 60.0 0.00 0.0 0.00 3.62 R
2142 2147 0.602638 GCATCGTCACAACTGGACCA 60.603 55.0 0.00 0.0 31.55 4.02 R
3202 3219 0.325933 CTGGCTTCACAGGGACATCA 59.674 55.0 0.00 0.0 34.84 3.07 R
4455 4509 0.393944 GAAATGTCGGACCCTTCCCC 60.394 60.0 5.55 0.0 38.99 4.81 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 2.983592 CCCAACACCGTGCTTCCC 60.984 66.667 0.00 0.00 0.00 3.97
70 71 4.367023 CCGTGCTTCCCGGTCGAA 62.367 66.667 0.00 0.00 40.59 3.71
71 72 2.125673 CGTGCTTCCCGGTCGAAT 60.126 61.111 0.00 0.00 0.00 3.34
95 96 3.371595 GCCACCCCTTGTGTATTGTATCT 60.372 47.826 0.00 0.00 43.85 1.98
164 165 0.686441 TCGTCGTTGGAGGGATGGAT 60.686 55.000 0.00 0.00 0.00 3.41
169 170 3.045634 TCGTTGGAGGGATGGATGTTAT 58.954 45.455 0.00 0.00 0.00 1.89
171 172 3.565482 CGTTGGAGGGATGGATGTTATTG 59.435 47.826 0.00 0.00 0.00 1.90
213 214 1.002544 AGTGGTAGACTTTGAGGCAGC 59.997 52.381 0.00 0.00 0.00 5.25
237 238 5.450453 TCCAAACCTTCACAAACTATTGGA 58.550 37.500 0.00 0.00 41.89 3.53
389 390 6.882768 AATAGAAGAAGTGGGTGAAGAGAT 57.117 37.500 0.00 0.00 0.00 2.75
418 419 1.052287 CGGCTTGCATCGTTTGAAAC 58.948 50.000 0.00 0.00 0.00 2.78
435 436 3.745975 TGAAACTTACATCTCACCGCTTG 59.254 43.478 0.00 0.00 0.00 4.01
436 437 3.402628 AACTTACATCTCACCGCTTGT 57.597 42.857 0.00 0.00 0.00 3.16
452 453 2.073816 CTTGTAGTTACAACCCTGCCG 58.926 52.381 0.73 0.00 40.93 5.69
509 510 1.097547 CCACTTGCCCGCCTTGATAG 61.098 60.000 0.00 0.00 0.00 2.08
511 512 1.451927 CTTGCCCGCCTTGATAGCA 60.452 57.895 0.00 0.00 0.00 3.49
536 537 3.307762 CCAAAGAAAGAATCGAGGTCCCT 60.308 47.826 0.00 0.00 0.00 4.20
550 552 1.306141 TCCCTCGTGAGAAGCCCAT 60.306 57.895 0.00 0.00 41.32 4.00
577 579 0.875059 CCAAGTTCTTCCTTCACGGC 59.125 55.000 0.00 0.00 0.00 5.68
586 588 1.078918 CCTTCACGGCTGATGCTCA 60.079 57.895 0.00 0.00 39.59 4.26
601 603 2.360844 TGCTCAGAAGTACCTCTCGAG 58.639 52.381 5.93 5.93 0.00 4.04
616 618 0.680280 TCGAGTGGAGGTGGTAGCTC 60.680 60.000 0.00 0.00 41.73 4.09
636 638 5.070847 AGCTCCTTCAAAAACCACATCATTT 59.929 36.000 0.00 0.00 0.00 2.32
641 643 9.527157 TCCTTCAAAAACCACATCATTTCTATA 57.473 29.630 0.00 0.00 0.00 1.31
666 668 0.779997 ACAGCTCCCAAAGACCCAAT 59.220 50.000 0.00 0.00 0.00 3.16
687 689 5.625568 ATGTGATGATGGACTTGAGATCA 57.374 39.130 0.00 0.00 0.00 2.92
697 699 0.942962 CTTGAGATCATTGGGCGAGC 59.057 55.000 0.00 0.00 0.00 5.03
726 728 1.069022 CAAGTCTTTGATGTGCACCCG 60.069 52.381 15.69 0.00 36.36 5.28
728 730 0.951558 GTCTTTGATGTGCACCCGTT 59.048 50.000 15.69 0.00 0.00 4.44
780 782 9.232082 CTCAAATCATGAAAAACGTAAGTCAAA 57.768 29.630 0.00 0.00 45.04 2.69
813 815 0.239347 GCGGATCCATGCTTGTATGC 59.761 55.000 13.41 0.00 0.00 3.14
830 832 6.252599 TGTATGCAATCCCTCAAGTAATCT 57.747 37.500 0.00 0.00 0.00 2.40
831 833 6.662755 TGTATGCAATCCCTCAAGTAATCTT 58.337 36.000 0.00 0.00 0.00 2.40
832 834 7.801104 TGTATGCAATCCCTCAAGTAATCTTA 58.199 34.615 0.00 0.00 32.07 2.10
833 835 7.933577 TGTATGCAATCCCTCAAGTAATCTTAG 59.066 37.037 0.00 0.00 32.07 2.18
834 836 5.684704 TGCAATCCCTCAAGTAATCTTAGG 58.315 41.667 0.00 0.00 32.07 2.69
835 837 5.428457 TGCAATCCCTCAAGTAATCTTAGGA 59.572 40.000 0.00 0.00 33.86 2.94
836 838 6.101734 TGCAATCCCTCAAGTAATCTTAGGAT 59.898 38.462 0.00 0.00 38.12 3.24
837 839 7.001073 GCAATCCCTCAAGTAATCTTAGGATT 58.999 38.462 5.33 5.33 41.98 3.01
838 840 7.503902 GCAATCCCTCAAGTAATCTTAGGATTT 59.496 37.037 5.30 0.00 40.82 2.17
839 841 9.413734 CAATCCCTCAAGTAATCTTAGGATTTT 57.586 33.333 5.30 0.00 40.82 1.82
1027 1031 2.835431 CACCCCCGGCACAACAAA 60.835 61.111 0.00 0.00 0.00 2.83
1091 1095 4.344865 GGTGGGCATGGACGGTGT 62.345 66.667 0.00 0.00 0.00 4.16
1169 1173 0.175073 GGCGGGATCAGTAAGTTCGT 59.825 55.000 0.00 0.00 0.00 3.85
1265 1269 3.769875 GAGCGTCGGTTCCGGATCC 62.770 68.421 20.05 20.05 0.00 3.36
1329 1333 8.539770 ACTACATGTCTTATCAGAACTTGTTG 57.460 34.615 0.00 0.00 0.00 3.33
1346 1350 5.363868 ACTTGTTGTAGGATGCTAGCATAGA 59.636 40.000 29.64 15.00 42.77 1.98
1428 1433 0.729140 CCGTGGTGCGCTTGATTTTC 60.729 55.000 9.73 0.00 39.71 2.29
1755 1760 3.419943 TGGCTGTGCTTATGTGAAATGA 58.580 40.909 0.00 0.00 0.00 2.57
1792 1797 6.260700 TGTGGGTAGCATATGGTTAGAAAT 57.739 37.500 13.49 0.00 0.00 2.17
1818 1823 6.887626 TTTTGTGTTTAATGTACTCCCTCC 57.112 37.500 0.00 0.00 0.00 4.30
1819 1824 4.196626 TGTGTTTAATGTACTCCCTCCG 57.803 45.455 0.00 0.00 0.00 4.63
1820 1825 3.579586 TGTGTTTAATGTACTCCCTCCGT 59.420 43.478 0.00 0.00 0.00 4.69
1821 1826 4.040706 TGTGTTTAATGTACTCCCTCCGTT 59.959 41.667 0.00 0.00 0.00 4.44
1822 1827 4.628766 GTGTTTAATGTACTCCCTCCGTTC 59.371 45.833 0.00 0.00 0.00 3.95
1823 1828 4.186926 GTTTAATGTACTCCCTCCGTTCC 58.813 47.826 0.00 0.00 0.00 3.62
1824 1829 2.249309 AATGTACTCCCTCCGTTCCT 57.751 50.000 0.00 0.00 0.00 3.36
1825 1830 3.393426 AATGTACTCCCTCCGTTCCTA 57.607 47.619 0.00 0.00 0.00 2.94
1826 1831 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
1827 1832 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
1828 1833 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
1829 1834 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
1830 1835 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
1831 1836 5.901276 TGTACTCCCTCCGTTCCTAAATATT 59.099 40.000 0.00 0.00 0.00 1.28
1832 1837 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
1833 1838 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
1834 1839 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
1835 1840 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
1836 1841 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
1837 1842 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
1838 1843 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
1839 1844 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
1840 1845 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
1841 1846 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
1842 1847 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
1843 1848 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
1914 1919 7.138692 AGTGTAGATTCACTCATTTTGCTTC 57.861 36.000 0.00 0.00 44.07 3.86
1915 1920 6.017933 GTGTAGATTCACTCATTTTGCTTCG 58.982 40.000 0.00 0.00 35.68 3.79
1916 1921 5.700832 TGTAGATTCACTCATTTTGCTTCGT 59.299 36.000 0.00 0.00 0.00 3.85
1917 1922 6.871492 TGTAGATTCACTCATTTTGCTTCGTA 59.129 34.615 0.00 0.00 0.00 3.43
1918 1923 6.992063 AGATTCACTCATTTTGCTTCGTAT 57.008 33.333 0.00 0.00 0.00 3.06
1919 1924 6.779117 AGATTCACTCATTTTGCTTCGTATG 58.221 36.000 0.00 0.00 0.00 2.39
1920 1925 5.940192 TTCACTCATTTTGCTTCGTATGT 57.060 34.783 0.00 0.00 0.00 2.29
1921 1926 7.549134 AGATTCACTCATTTTGCTTCGTATGTA 59.451 33.333 0.00 0.00 0.00 2.29
1922 1927 6.647212 TCACTCATTTTGCTTCGTATGTAG 57.353 37.500 0.00 0.00 0.00 2.74
1923 1928 6.163476 TCACTCATTTTGCTTCGTATGTAGT 58.837 36.000 0.00 0.00 0.00 2.73
1924 1929 6.310467 TCACTCATTTTGCTTCGTATGTAGTC 59.690 38.462 0.00 0.00 0.00 2.59
1925 1930 6.090763 CACTCATTTTGCTTCGTATGTAGTCA 59.909 38.462 0.00 0.00 0.00 3.41
1926 1931 6.090898 ACTCATTTTGCTTCGTATGTAGTCAC 59.909 38.462 0.00 0.00 0.00 3.67
1927 1932 6.163476 TCATTTTGCTTCGTATGTAGTCACT 58.837 36.000 0.00 0.00 0.00 3.41
1928 1933 6.649141 TCATTTTGCTTCGTATGTAGTCACTT 59.351 34.615 0.00 0.00 0.00 3.16
1929 1934 5.839262 TTTGCTTCGTATGTAGTCACTTG 57.161 39.130 0.00 0.00 0.00 3.16
1930 1935 4.514781 TGCTTCGTATGTAGTCACTTGT 57.485 40.909 0.00 0.00 0.00 3.16
1931 1936 4.878439 TGCTTCGTATGTAGTCACTTGTT 58.122 39.130 0.00 0.00 0.00 2.83
1932 1937 4.684242 TGCTTCGTATGTAGTCACTTGTTG 59.316 41.667 0.00 0.00 0.00 3.33
1933 1938 4.921515 GCTTCGTATGTAGTCACTTGTTGA 59.078 41.667 0.00 0.00 0.00 3.18
1934 1939 5.404366 GCTTCGTATGTAGTCACTTGTTGAA 59.596 40.000 0.00 0.00 35.39 2.69
1935 1940 6.073980 GCTTCGTATGTAGTCACTTGTTGAAA 60.074 38.462 0.00 0.00 35.39 2.69
1936 1941 7.360101 GCTTCGTATGTAGTCACTTGTTGAAAT 60.360 37.037 0.00 0.00 35.39 2.17
1937 1942 7.346208 TCGTATGTAGTCACTTGTTGAAATG 57.654 36.000 0.00 0.00 35.39 2.32
1938 1943 6.015504 CGTATGTAGTCACTTGTTGAAATGC 58.984 40.000 0.00 0.00 35.39 3.56
1939 1944 4.829064 TGTAGTCACTTGTTGAAATGCC 57.171 40.909 0.00 0.00 35.39 4.40
1940 1945 4.460263 TGTAGTCACTTGTTGAAATGCCT 58.540 39.130 0.00 0.00 35.39 4.75
1941 1946 5.616270 TGTAGTCACTTGTTGAAATGCCTA 58.384 37.500 0.00 0.00 35.39 3.93
1942 1947 5.700832 TGTAGTCACTTGTTGAAATGCCTAG 59.299 40.000 0.00 0.00 35.39 3.02
1943 1948 4.973168 AGTCACTTGTTGAAATGCCTAGA 58.027 39.130 0.00 0.00 35.39 2.43
1944 1949 5.376625 AGTCACTTGTTGAAATGCCTAGAA 58.623 37.500 0.00 0.00 35.39 2.10
1945 1950 5.827797 AGTCACTTGTTGAAATGCCTAGAAA 59.172 36.000 0.00 0.00 35.39 2.52
1946 1951 6.016777 AGTCACTTGTTGAAATGCCTAGAAAG 60.017 38.462 0.00 0.00 35.39 2.62
1947 1952 6.017109 GTCACTTGTTGAAATGCCTAGAAAGA 60.017 38.462 0.00 0.00 35.39 2.52
1948 1953 6.017109 TCACTTGTTGAAATGCCTAGAAAGAC 60.017 38.462 0.00 0.00 0.00 3.01
1949 1954 5.827797 ACTTGTTGAAATGCCTAGAAAGACA 59.172 36.000 0.00 0.00 0.00 3.41
1950 1955 6.321181 ACTTGTTGAAATGCCTAGAAAGACAA 59.679 34.615 0.00 0.00 0.00 3.18
1951 1956 6.317789 TGTTGAAATGCCTAGAAAGACAAG 57.682 37.500 0.00 0.00 0.00 3.16
1952 1957 5.827797 TGTTGAAATGCCTAGAAAGACAAGT 59.172 36.000 0.00 0.00 0.00 3.16
1953 1958 6.995686 TGTTGAAATGCCTAGAAAGACAAGTA 59.004 34.615 0.00 0.00 0.00 2.24
1954 1959 7.665559 TGTTGAAATGCCTAGAAAGACAAGTAT 59.334 33.333 0.00 0.00 0.00 2.12
1955 1960 8.515414 GTTGAAATGCCTAGAAAGACAAGTATT 58.485 33.333 0.00 0.00 0.00 1.89
1956 1961 8.635765 TGAAATGCCTAGAAAGACAAGTATTT 57.364 30.769 0.00 0.00 0.00 1.40
1957 1962 9.733556 TGAAATGCCTAGAAAGACAAGTATTTA 57.266 29.630 0.00 0.00 0.00 1.40
1959 1964 8.738645 AATGCCTAGAAAGACAAGTATTTAGG 57.261 34.615 5.26 5.26 0.00 2.69
1960 1965 7.490657 TGCCTAGAAAGACAAGTATTTAGGA 57.509 36.000 11.40 0.00 26.70 2.94
1961 1966 7.913789 TGCCTAGAAAGACAAGTATTTAGGAA 58.086 34.615 11.40 1.02 26.70 3.36
1962 1967 7.822822 TGCCTAGAAAGACAAGTATTTAGGAAC 59.177 37.037 11.40 0.00 26.70 3.62
1963 1968 7.010275 GCCTAGAAAGACAAGTATTTAGGAACG 59.990 40.741 11.40 0.00 26.70 3.95
1964 1969 7.491696 CCTAGAAAGACAAGTATTTAGGAACGG 59.508 40.741 4.01 0.00 26.70 4.44
1965 1970 7.001099 AGAAAGACAAGTATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
1966 1971 7.097834 AGAAAGACAAGTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
1967 1972 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
1968 1973 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
1969 1974 4.098894 ACAAGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
1988 1993 4.141111 AGGGAGTAGAAGCTAGTAAGAGGG 60.141 50.000 0.00 0.00 0.00 4.30
2156 2161 1.537202 GCTTCATGGTCCAGTTGTGAC 59.463 52.381 0.00 0.00 0.00 3.67
2170 2175 2.168326 TGTGACGATGCACAGATTGT 57.832 45.000 0.00 0.00 43.35 2.71
2171 2176 2.493035 TGTGACGATGCACAGATTGTT 58.507 42.857 0.00 0.00 43.35 2.83
2232 2237 8.357290 TGTAGTTAGTCTTTGAATAGTGCCTA 57.643 34.615 0.00 0.00 0.00 3.93
2240 2245 9.515226 AGTCTTTGAATAGTGCCTACAATTTTA 57.485 29.630 0.00 0.00 0.00 1.52
2244 2249 6.184068 TGAATAGTGCCTACAATTTTAGCCA 58.816 36.000 0.00 0.00 0.00 4.75
2264 2269 5.307976 AGCCATAGTATCTTAAGGTGCATCA 59.692 40.000 6.60 0.00 0.00 3.07
2275 2280 3.988976 AGGTGCATCAGAAAGCTCTTA 57.011 42.857 0.00 0.00 0.00 2.10
2367 2372 7.339466 AGGAAATTGTTCGTATTTATCCAAGCT 59.661 33.333 0.00 0.00 34.28 3.74
2395 2400 8.425577 TCATTCTGCTAGTATCTTTGCTAAAC 57.574 34.615 0.00 0.00 0.00 2.01
2472 2477 0.035820 TGAACCACGCAATAGGGACC 60.036 55.000 0.00 0.00 0.00 4.46
2871 2888 6.662865 TTGCAATCCAAGGTATTCTTTTCA 57.337 33.333 0.00 0.00 32.41 2.69
2890 2907 5.787953 TTCATTTGCTCATTTTGTCCTGA 57.212 34.783 0.00 0.00 0.00 3.86
2948 2965 3.332187 TGGGTATTGAGGTTGGACATTGA 59.668 43.478 0.00 0.00 0.00 2.57
3184 3201 0.329596 AGGATGAAACTGGAGTGCCC 59.670 55.000 0.00 0.00 0.00 5.36
3202 3219 1.347050 CCCGGAGATGCTCATCATTCT 59.653 52.381 0.73 0.00 40.22 2.40
3262 3279 5.415389 TCCATTGACCAACACTGTAATGATG 59.585 40.000 0.00 0.00 0.00 3.07
3278 3295 2.089201 TGATGCAACCTGATGAAGCTG 58.911 47.619 0.00 0.00 0.00 4.24
3347 3364 2.436646 AAGACGCTTGGCCATCCG 60.437 61.111 20.14 20.14 34.14 4.18
3586 3603 4.882427 CCTCACGTGGAAGATAGAAGAGTA 59.118 45.833 17.00 0.00 0.00 2.59
3798 3818 1.647629 CGAGGAATGCAGCATCAGC 59.352 57.895 8.77 1.27 42.56 4.26
3853 3873 3.052082 CCACCCAGCAGTGCTTCG 61.052 66.667 16.89 10.85 36.40 3.79
3885 3905 2.234908 CAAAGGAACCCAGAGTCGAGAT 59.765 50.000 0.00 0.00 0.00 2.75
3954 3974 1.837439 TCGTGAGGCAAATAGGTCCAT 59.163 47.619 0.00 0.00 0.00 3.41
3962 3982 4.593206 AGGCAAATAGGTCCATCGAAGATA 59.407 41.667 0.00 0.00 45.12 1.98
4030 4050 9.585099 GTGGAATAATATTTGCTGTTTGAATCA 57.415 29.630 0.00 0.00 0.00 2.57
4066 4087 7.607607 GGCCTTCCAATTTTACATCTTGATTTT 59.392 33.333 0.00 0.00 0.00 1.82
4143 4164 0.744874 AGATGGATGTACGTGGACCG 59.255 55.000 0.00 0.00 44.03 4.79
4189 4210 7.255590 CCATGTTGGCCATTAGTTATTAGGAAG 60.256 40.741 6.09 0.00 0.00 3.46
4190 4211 5.592688 TGTTGGCCATTAGTTATTAGGAAGC 59.407 40.000 6.09 0.00 0.00 3.86
4197 4218 7.365741 CCATTAGTTATTAGGAAGCTTGCATG 58.634 38.462 20.82 10.80 0.00 4.06
4198 4219 4.907879 AGTTATTAGGAAGCTTGCATGC 57.092 40.909 20.82 16.37 0.00 4.06
4199 4220 3.633986 AGTTATTAGGAAGCTTGCATGCC 59.366 43.478 20.82 6.89 0.00 4.40
4200 4221 2.449137 ATTAGGAAGCTTGCATGCCT 57.551 45.000 20.82 14.20 0.00 4.75
4201 4222 1.466856 TTAGGAAGCTTGCATGCCTG 58.533 50.000 20.82 8.99 0.00 4.85
4202 4223 0.620030 TAGGAAGCTTGCATGCCTGA 59.380 50.000 20.82 0.00 0.00 3.86
4203 4224 0.033405 AGGAAGCTTGCATGCCTGAT 60.033 50.000 20.82 3.31 0.00 2.90
4204 4225 0.102481 GGAAGCTTGCATGCCTGATG 59.898 55.000 19.99 0.00 34.84 3.07
4205 4226 0.102481 GAAGCTTGCATGCCTGATGG 59.898 55.000 19.99 0.00 31.99 3.51
4206 4227 0.613853 AAGCTTGCATGCCTGATGGT 60.614 50.000 19.99 1.65 35.27 3.55
4207 4228 0.256752 AGCTTGCATGCCTGATGGTA 59.743 50.000 19.99 0.00 35.27 3.25
4208 4229 1.133575 AGCTTGCATGCCTGATGGTAT 60.134 47.619 19.99 0.00 39.30 2.73
4216 4237 3.497103 TGCCTGATGGTATGATCTTGG 57.503 47.619 0.00 0.00 35.27 3.61
4217 4238 3.047857 TGCCTGATGGTATGATCTTGGA 58.952 45.455 0.00 0.00 35.27 3.53
4218 4239 3.654321 TGCCTGATGGTATGATCTTGGAT 59.346 43.478 0.00 0.00 35.27 3.41
4219 4240 4.260170 GCCTGATGGTATGATCTTGGATC 58.740 47.826 0.00 1.04 35.27 3.36
4220 4241 4.841422 CCTGATGGTATGATCTTGGATCC 58.159 47.826 4.20 4.20 0.00 3.36
4221 4242 4.287845 CCTGATGGTATGATCTTGGATCCA 59.712 45.833 11.44 11.44 0.00 3.41
4222 4243 5.045066 CCTGATGGTATGATCTTGGATCCAT 60.045 44.000 17.06 0.00 36.99 3.41
4223 4244 5.812286 TGATGGTATGATCTTGGATCCATG 58.188 41.667 17.06 18.37 34.87 3.66
4325 4371 4.802039 CAGCACATGTTATGCCTTCAATTC 59.198 41.667 0.00 0.00 44.53 2.17
4351 4405 7.107639 AGCGTTAATGGCCAAAATAAATAGT 57.892 32.000 10.96 0.00 0.00 2.12
4361 4415 6.208599 GGCCAAAATAAATAGTAGCATGCCTA 59.791 38.462 15.66 10.17 0.00 3.93
4395 4449 9.575783 TTCAGGTGTATTTGTTTCTTTTGTAAC 57.424 29.630 0.00 0.00 0.00 2.50
4396 4450 8.192110 TCAGGTGTATTTGTTTCTTTTGTAACC 58.808 33.333 0.00 0.00 0.00 2.85
4397 4451 7.976734 CAGGTGTATTTGTTTCTTTTGTAACCA 59.023 33.333 0.00 0.00 0.00 3.67
4398 4452 8.700973 AGGTGTATTTGTTTCTTTTGTAACCAT 58.299 29.630 0.00 0.00 0.00 3.55
4399 4453 8.760569 GGTGTATTTGTTTCTTTTGTAACCATG 58.239 33.333 0.00 0.00 0.00 3.66
4400 4454 9.308318 GTGTATTTGTTTCTTTTGTAACCATGT 57.692 29.630 0.00 0.00 0.00 3.21
4404 4458 8.705048 TTTGTTTCTTTTGTAACCATGTAACC 57.295 30.769 0.00 0.00 0.00 2.85
4405 4459 7.406031 TGTTTCTTTTGTAACCATGTAACCA 57.594 32.000 0.00 0.00 0.00 3.67
4406 4460 7.837863 TGTTTCTTTTGTAACCATGTAACCAA 58.162 30.769 0.00 0.00 0.00 3.67
4407 4461 8.311836 TGTTTCTTTTGTAACCATGTAACCAAA 58.688 29.630 0.00 0.00 0.00 3.28
4408 4462 9.320352 GTTTCTTTTGTAACCATGTAACCAAAT 57.680 29.630 0.00 0.00 0.00 2.32
4415 4469 9.765795 TTGTAACCATGTAACCAAATAAAAAGG 57.234 29.630 0.00 0.00 0.00 3.11
4416 4470 8.368668 TGTAACCATGTAACCAAATAAAAAGGG 58.631 33.333 0.00 0.00 0.00 3.95
4417 4471 5.800296 ACCATGTAACCAAATAAAAAGGGC 58.200 37.500 0.00 0.00 0.00 5.19
4418 4472 5.308237 ACCATGTAACCAAATAAAAAGGGCA 59.692 36.000 0.00 0.00 0.00 5.36
4419 4473 5.874261 CCATGTAACCAAATAAAAAGGGCAG 59.126 40.000 0.00 0.00 0.00 4.85
4420 4474 4.888917 TGTAACCAAATAAAAAGGGCAGC 58.111 39.130 0.00 0.00 0.00 5.25
4421 4475 3.417069 AACCAAATAAAAAGGGCAGCC 57.583 42.857 1.26 1.26 0.00 4.85
4422 4476 1.628340 ACCAAATAAAAAGGGCAGCCC 59.372 47.619 24.90 24.90 45.90 5.19
4433 4487 2.045045 GCAGCCCCAGTGCATGTA 60.045 61.111 0.00 0.00 40.86 2.29
4434 4488 2.117156 GCAGCCCCAGTGCATGTAG 61.117 63.158 0.00 0.00 40.86 2.74
4435 4489 2.117156 CAGCCCCAGTGCATGTAGC 61.117 63.158 0.00 0.00 45.96 3.58
4436 4490 2.273449 GCCCCAGTGCATGTAGCT 59.727 61.111 0.00 0.00 45.94 3.32
4437 4491 1.821332 GCCCCAGTGCATGTAGCTC 60.821 63.158 0.00 0.00 45.94 4.09
4438 4492 1.153086 CCCCAGTGCATGTAGCTCC 60.153 63.158 0.00 0.00 45.94 4.70
4439 4493 1.153086 CCCAGTGCATGTAGCTCCC 60.153 63.158 0.00 0.00 45.94 4.30
4440 4494 1.522355 CCAGTGCATGTAGCTCCCG 60.522 63.158 0.00 0.00 45.94 5.14
4441 4495 2.176273 CAGTGCATGTAGCTCCCGC 61.176 63.158 0.00 0.00 45.94 6.13
4443 4497 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
4444 4498 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
4445 4499 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
4446 4500 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
4449 4503 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
4461 4515 4.785453 GCGCAGGGTCTGGGGAAG 62.785 72.222 0.30 0.00 43.28 3.46
4462 4516 4.101448 CGCAGGGTCTGGGGAAGG 62.101 72.222 4.35 0.00 40.11 3.46
4463 4517 3.732849 GCAGGGTCTGGGGAAGGG 61.733 72.222 0.00 0.00 31.21 3.95
4464 4518 2.204151 CAGGGTCTGGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
4465 4519 2.125225 AGGGTCTGGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
4466 4520 3.015753 GGGTCTGGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
4467 4521 3.400054 GGTCTGGGGAAGGGTCCG 61.400 72.222 0.00 0.00 46.04 4.79
4468 4522 2.284405 GTCTGGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
4469 4523 2.284405 TCTGGGGAAGGGTCCGAC 60.284 66.667 0.00 0.00 46.04 4.79
4470 4524 2.606519 CTGGGGAAGGGTCCGACA 60.607 66.667 0.00 0.00 46.04 4.35
4471 4525 1.995626 CTGGGGAAGGGTCCGACAT 60.996 63.158 0.00 0.00 46.04 3.06
4472 4526 1.540367 TGGGGAAGGGTCCGACATT 60.540 57.895 0.00 0.00 46.04 2.71
4473 4527 1.137594 TGGGGAAGGGTCCGACATTT 61.138 55.000 0.00 0.00 46.04 2.32
4474 4528 0.393944 GGGGAAGGGTCCGACATTTC 60.394 60.000 0.00 3.63 46.04 2.17
4475 4529 0.618981 GGGAAGGGTCCGACATTTCT 59.381 55.000 0.00 0.00 46.04 2.52
4476 4530 1.679032 GGGAAGGGTCCGACATTTCTG 60.679 57.143 0.00 0.00 46.04 3.02
4477 4531 1.003233 GGAAGGGTCCGACATTTCTGT 59.997 52.381 0.00 0.00 34.09 3.41
4478 4532 2.235402 GGAAGGGTCCGACATTTCTGTA 59.765 50.000 0.00 0.00 32.37 2.74
4479 4533 3.307199 GGAAGGGTCCGACATTTCTGTAA 60.307 47.826 0.00 0.00 32.37 2.41
4480 4534 3.611766 AGGGTCCGACATTTCTGTAAG 57.388 47.619 0.00 0.00 35.14 2.34
4481 4535 3.170717 AGGGTCCGACATTTCTGTAAGA 58.829 45.455 0.00 0.00 44.68 2.10
4493 4547 3.685139 TCTGTAAGAGGCTGTTTCCAG 57.315 47.619 0.90 9.48 38.67 3.86
4494 4548 2.303022 TCTGTAAGAGGCTGTTTCCAGG 59.697 50.000 17.71 5.83 38.67 4.45
4495 4549 2.303022 CTGTAAGAGGCTGTTTCCAGGA 59.697 50.000 0.90 0.00 35.89 3.86
4496 4550 2.038557 TGTAAGAGGCTGTTTCCAGGAC 59.961 50.000 0.90 0.00 39.22 3.85
4497 4551 1.439543 AAGAGGCTGTTTCCAGGACT 58.560 50.000 0.00 0.00 39.22 3.85
4498 4552 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
4499 4553 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
4500 4554 1.072331 GAGGCTGTTTCCAGGACTTGA 59.928 52.381 0.00 0.00 39.22 3.02
4501 4555 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
4502 4556 1.609072 GGCTGTTTCCAGGACTTGAAC 59.391 52.381 0.00 0.00 39.22 3.18
4503 4557 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
4504 4558 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
4505 4559 1.235724 GTTTCCAGGACTTGAACCCG 58.764 55.000 0.00 0.00 0.00 5.28
4506 4560 0.841289 TTTCCAGGACTTGAACCCGT 59.159 50.000 0.00 0.00 0.00 5.28
4507 4561 0.107831 TTCCAGGACTTGAACCCGTG 59.892 55.000 0.00 0.00 0.00 4.94
4508 4562 0.761323 TCCAGGACTTGAACCCGTGA 60.761 55.000 0.00 0.00 0.00 4.35
4509 4563 0.602905 CCAGGACTTGAACCCGTGAC 60.603 60.000 0.00 0.00 0.00 3.67
4510 4564 0.602905 CAGGACTTGAACCCGTGACC 60.603 60.000 0.00 0.00 0.00 4.02
4511 4565 0.763223 AGGACTTGAACCCGTGACCT 60.763 55.000 0.00 0.00 0.00 3.85
4512 4566 0.320508 GGACTTGAACCCGTGACCTC 60.321 60.000 0.00 0.00 0.00 3.85
4513 4567 0.391597 GACTTGAACCCGTGACCTCA 59.608 55.000 0.00 0.00 0.00 3.86
4514 4568 1.002087 GACTTGAACCCGTGACCTCAT 59.998 52.381 0.00 0.00 0.00 2.90
4515 4569 1.270839 ACTTGAACCCGTGACCTCATG 60.271 52.381 0.00 0.00 0.00 3.07
4526 4580 2.154139 ACCTCATGGTCACAAGGCA 58.846 52.632 0.00 0.00 44.78 4.75
4527 4581 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85
4528 4582 1.310933 CCTCATGGTCACAAGGCAGC 61.311 60.000 0.00 0.00 0.00 5.25
4529 4583 0.607217 CTCATGGTCACAAGGCAGCA 60.607 55.000 0.00 0.00 0.00 4.41
4530 4584 0.607217 TCATGGTCACAAGGCAGCAG 60.607 55.000 0.00 0.00 0.00 4.24
4531 4585 1.975407 ATGGTCACAAGGCAGCAGC 60.975 57.895 0.00 0.00 41.10 5.25
4532 4586 2.282040 GGTCACAAGGCAGCAGCT 60.282 61.111 0.00 0.00 41.70 4.24
4533 4587 1.900498 GGTCACAAGGCAGCAGCTT 60.900 57.895 0.00 0.00 41.70 3.74
4534 4588 1.458639 GGTCACAAGGCAGCAGCTTT 61.459 55.000 0.00 0.00 41.17 3.51
4535 4589 1.238439 GTCACAAGGCAGCAGCTTTA 58.762 50.000 0.00 0.00 38.07 1.85
4536 4590 1.068954 GTCACAAGGCAGCAGCTTTAC 60.069 52.381 0.00 0.00 38.07 2.01
4537 4591 0.242017 CACAAGGCAGCAGCTTTACC 59.758 55.000 0.00 0.00 38.07 2.85
4538 4592 0.178992 ACAAGGCAGCAGCTTTACCA 60.179 50.000 0.00 0.00 38.07 3.25
4539 4593 0.242017 CAAGGCAGCAGCTTTACCAC 59.758 55.000 0.00 0.00 38.07 4.16
4540 4594 0.111253 AAGGCAGCAGCTTTACCACT 59.889 50.000 0.00 0.00 38.40 4.00
4541 4595 0.607489 AGGCAGCAGCTTTACCACTG 60.607 55.000 0.00 0.00 41.70 3.66
4545 4599 3.972227 CAGCTTTACCACTGCGCT 58.028 55.556 9.73 0.00 0.00 5.92
4546 4600 3.137484 CAGCTTTACCACTGCGCTA 57.863 52.632 9.73 0.00 0.00 4.26
4547 4601 1.438651 CAGCTTTACCACTGCGCTAA 58.561 50.000 9.73 0.00 0.00 3.09
4548 4602 1.394917 CAGCTTTACCACTGCGCTAAG 59.605 52.381 9.73 0.00 0.00 2.18
4549 4603 0.727398 GCTTTACCACTGCGCTAAGG 59.273 55.000 9.73 10.10 0.00 2.69
4550 4604 0.727398 CTTTACCACTGCGCTAAGGC 59.273 55.000 9.73 0.00 0.00 4.35
4551 4605 0.323629 TTTACCACTGCGCTAAGGCT 59.676 50.000 9.73 1.47 36.09 4.58
4552 4606 0.108329 TTACCACTGCGCTAAGGCTC 60.108 55.000 9.73 0.00 36.09 4.70
4553 4607 1.956629 TACCACTGCGCTAAGGCTCC 61.957 60.000 9.73 0.00 36.09 4.70
4554 4608 2.512515 CACTGCGCTAAGGCTCCC 60.513 66.667 9.73 0.00 36.09 4.30
4555 4609 3.787001 ACTGCGCTAAGGCTCCCC 61.787 66.667 9.73 0.00 36.09 4.81
4556 4610 3.474570 CTGCGCTAAGGCTCCCCT 61.475 66.667 9.73 0.00 45.77 4.79
4599 4653 4.471157 AAACAAAATTTTGCCAGATGCG 57.529 36.364 26.94 4.46 45.60 4.73
4727 4782 3.557898 GCACCTTCCAGACTTGATTCTCA 60.558 47.826 0.00 0.00 0.00 3.27
4729 4784 4.020751 CACCTTCCAGACTTGATTCTCAGA 60.021 45.833 0.00 0.00 0.00 3.27
4746 4801 0.324368 AGACATCACCGTCCTAGCCA 60.324 55.000 0.00 0.00 36.52 4.75
4876 4931 1.963172 AGTTCTTTGTTCCCGTGGAC 58.037 50.000 0.00 0.00 0.00 4.02
4879 4934 1.057851 TCTTTGTTCCCGTGGACCCT 61.058 55.000 0.00 0.00 0.00 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 4.400961 GAGGCTTGCCGGCAGACT 62.401 66.667 30.75 28.96 41.46 3.24
56 57 2.267642 CCATTCGACCGGGAAGCA 59.732 61.111 6.32 0.00 0.00 3.91
95 96 1.254026 ACATCTTCGTCTCCGGTGAA 58.746 50.000 7.99 4.56 33.95 3.18
115 116 2.612972 GCTCCAAGGAAGTGAACATCGA 60.613 50.000 0.00 0.00 0.00 3.59
164 165 2.096819 GGAAATCGCCTTCGCAATAACA 59.903 45.455 0.00 0.00 35.26 2.41
169 170 0.239879 GTTGGAAATCGCCTTCGCAA 59.760 50.000 0.00 0.00 35.26 4.85
171 172 1.136774 GGTTGGAAATCGCCTTCGC 59.863 57.895 0.00 0.00 35.26 4.70
213 214 5.534654 TCCAATAGTTTGTGAAGGTTTGGAG 59.465 40.000 0.00 0.00 37.15 3.86
237 238 5.755849 AGGAATCGATTTGTGATTTACCCT 58.244 37.500 12.81 6.97 36.24 4.34
418 419 4.111375 ACTACAAGCGGTGAGATGTAAG 57.889 45.455 0.00 0.00 0.00 2.34
435 436 1.435577 CACGGCAGGGTTGTAACTAC 58.564 55.000 0.00 0.00 0.00 2.73
436 437 0.322322 CCACGGCAGGGTTGTAACTA 59.678 55.000 0.00 0.00 0.00 2.24
452 453 4.434520 GTTATCTAGGTGAAGACTGCCAC 58.565 47.826 0.00 0.00 0.00 5.01
509 510 4.636206 ACCTCGATTCTTTCTTTGGTATGC 59.364 41.667 0.00 0.00 0.00 3.14
511 512 5.429130 GGACCTCGATTCTTTCTTTGGTAT 58.571 41.667 0.00 0.00 0.00 2.73
536 537 1.945354 GACGGATGGGCTTCTCACGA 61.945 60.000 0.00 0.00 0.00 4.35
550 552 2.326428 AGGAAGAACTTGGAAGACGGA 58.674 47.619 0.00 0.00 0.00 4.69
586 588 2.356330 CCTCCACTCGAGAGGTACTTCT 60.356 54.545 25.49 7.31 45.05 2.85
636 638 5.428457 TCTTTGGGAGCTGTGGAAATATAGA 59.572 40.000 0.00 0.00 0.00 1.98
641 643 2.519013 GTCTTTGGGAGCTGTGGAAAT 58.481 47.619 0.00 0.00 0.00 2.17
666 668 5.625568 ATGATCTCAAGTCCATCATCACA 57.374 39.130 0.00 0.00 32.81 3.58
697 699 3.243301 ACATCAAAGACTTGCAGCAACTG 60.243 43.478 2.83 0.00 32.14 3.16
704 706 1.337703 GGTGCACATCAAAGACTTGCA 59.662 47.619 20.43 0.00 40.81 4.08
712 714 0.533085 TCGAACGGGTGCACATCAAA 60.533 50.000 20.43 0.00 0.00 2.69
745 747 4.424061 TTCATGATTTGAGCAAGTTCCG 57.576 40.909 0.00 0.00 35.27 4.30
780 782 1.137872 GATCCGCACATCCTCTCTGTT 59.862 52.381 0.00 0.00 0.00 3.16
813 815 8.986929 AAATCCTAAGATTACTTGAGGGATTG 57.013 34.615 17.51 0.00 42.03 2.67
1027 1031 2.597510 GGGTTTTGTGCGGCCTCT 60.598 61.111 0.00 0.00 0.00 3.69
1169 1173 0.725133 AGGGAGAAGGGGATCTTGGA 59.275 55.000 0.00 0.00 35.50 3.53
1265 1269 4.332819 CGCCCAAGAAACAAGATAACCTAG 59.667 45.833 0.00 0.00 0.00 3.02
1329 1333 5.877564 GGGAAATTCTATGCTAGCATCCTAC 59.122 44.000 32.76 17.42 37.82 3.18
1346 1350 4.078863 TGGGATTTTATCTCGGGGGAAATT 60.079 41.667 0.00 0.00 30.32 1.82
1428 1433 4.514577 ATTCTCGACCCCTGCGCG 62.515 66.667 0.00 0.00 0.00 6.86
1592 1597 4.016706 CGGCTGAAGAACCCGGGT 62.017 66.667 24.16 24.16 38.42 5.28
1792 1797 9.016438 GGAGGGAGTACATTAAACACAAAATTA 57.984 33.333 0.00 0.00 0.00 1.40
1807 1812 2.905415 TTAGGAACGGAGGGAGTACA 57.095 50.000 0.00 0.00 0.00 2.90
1808 1813 6.416631 AATATTTAGGAACGGAGGGAGTAC 57.583 41.667 0.00 0.00 0.00 2.73
1809 1814 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
1810 1815 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
1811 1816 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
1812 1817 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
1813 1818 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
1814 1819 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
1815 1820 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
1816 1821 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
1817 1822 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
1891 1896 6.017933 CGAAGCAAAATGAGTGAATCTACAC 58.982 40.000 0.00 0.00 40.60 2.90
1892 1897 5.700832 ACGAAGCAAAATGAGTGAATCTACA 59.299 36.000 0.00 0.00 0.00 2.74
1893 1898 6.170675 ACGAAGCAAAATGAGTGAATCTAC 57.829 37.500 0.00 0.00 0.00 2.59
1894 1899 7.549134 ACATACGAAGCAAAATGAGTGAATCTA 59.451 33.333 0.00 0.00 0.00 1.98
1895 1900 6.372659 ACATACGAAGCAAAATGAGTGAATCT 59.627 34.615 0.00 0.00 0.00 2.40
1896 1901 6.546395 ACATACGAAGCAAAATGAGTGAATC 58.454 36.000 0.00 0.00 0.00 2.52
1897 1902 6.500684 ACATACGAAGCAAAATGAGTGAAT 57.499 33.333 0.00 0.00 0.00 2.57
1898 1903 5.940192 ACATACGAAGCAAAATGAGTGAA 57.060 34.783 0.00 0.00 0.00 3.18
1899 1904 6.163476 ACTACATACGAAGCAAAATGAGTGA 58.837 36.000 0.00 0.00 0.00 3.41
1900 1905 6.090763 TGACTACATACGAAGCAAAATGAGTG 59.909 38.462 0.00 0.00 0.00 3.51
1901 1906 6.090898 GTGACTACATACGAAGCAAAATGAGT 59.909 38.462 0.00 0.00 0.00 3.41
1902 1907 6.311445 AGTGACTACATACGAAGCAAAATGAG 59.689 38.462 0.00 0.00 0.00 2.90
1903 1908 6.163476 AGTGACTACATACGAAGCAAAATGA 58.837 36.000 0.00 0.00 0.00 2.57
1904 1909 6.408858 AGTGACTACATACGAAGCAAAATG 57.591 37.500 0.00 0.00 0.00 2.32
1905 1910 6.426937 ACAAGTGACTACATACGAAGCAAAAT 59.573 34.615 0.00 0.00 0.00 1.82
1906 1911 5.756347 ACAAGTGACTACATACGAAGCAAAA 59.244 36.000 0.00 0.00 0.00 2.44
1907 1912 5.294356 ACAAGTGACTACATACGAAGCAAA 58.706 37.500 0.00 0.00 0.00 3.68
1908 1913 4.878439 ACAAGTGACTACATACGAAGCAA 58.122 39.130 0.00 0.00 0.00 3.91
1909 1914 4.514781 ACAAGTGACTACATACGAAGCA 57.485 40.909 0.00 0.00 0.00 3.91
1910 1915 4.921515 TCAACAAGTGACTACATACGAAGC 59.078 41.667 0.00 0.00 0.00 3.86
1911 1916 7.402811 TTTCAACAAGTGACTACATACGAAG 57.597 36.000 0.00 0.00 35.39 3.79
1912 1917 7.570507 GCATTTCAACAAGTGACTACATACGAA 60.571 37.037 0.00 0.00 35.39 3.85
1913 1918 6.128661 GCATTTCAACAAGTGACTACATACGA 60.129 38.462 0.00 0.00 35.39 3.43
1914 1919 6.015504 GCATTTCAACAAGTGACTACATACG 58.984 40.000 0.00 0.00 35.39 3.06
1915 1920 6.149474 AGGCATTTCAACAAGTGACTACATAC 59.851 38.462 0.00 0.00 35.84 2.39
1916 1921 6.237901 AGGCATTTCAACAAGTGACTACATA 58.762 36.000 0.00 0.00 35.84 2.29
1917 1922 5.072741 AGGCATTTCAACAAGTGACTACAT 58.927 37.500 0.00 0.00 35.84 2.29
1918 1923 4.460263 AGGCATTTCAACAAGTGACTACA 58.540 39.130 0.00 0.00 35.84 2.74
1919 1924 5.932303 TCTAGGCATTTCAACAAGTGACTAC 59.068 40.000 0.00 0.00 38.51 2.73
1920 1925 6.109156 TCTAGGCATTTCAACAAGTGACTA 57.891 37.500 0.00 0.00 38.51 2.59
1921 1926 4.973168 TCTAGGCATTTCAACAAGTGACT 58.027 39.130 0.00 0.00 40.60 3.41
1922 1927 5.689383 TTCTAGGCATTTCAACAAGTGAC 57.311 39.130 0.00 0.00 35.39 3.67
1923 1928 6.017109 GTCTTTCTAGGCATTTCAACAAGTGA 60.017 38.462 0.00 0.00 0.00 3.41
1924 1929 6.145535 GTCTTTCTAGGCATTTCAACAAGTG 58.854 40.000 0.00 0.00 0.00 3.16
1925 1930 5.827797 TGTCTTTCTAGGCATTTCAACAAGT 59.172 36.000 0.00 0.00 29.10 3.16
1926 1931 6.317789 TGTCTTTCTAGGCATTTCAACAAG 57.682 37.500 0.00 0.00 29.10 3.16
1927 1932 6.321181 ACTTGTCTTTCTAGGCATTTCAACAA 59.679 34.615 0.00 0.00 35.56 2.83
1928 1933 5.827797 ACTTGTCTTTCTAGGCATTTCAACA 59.172 36.000 0.00 0.00 35.56 3.33
1929 1934 6.319141 ACTTGTCTTTCTAGGCATTTCAAC 57.681 37.500 0.00 0.00 35.56 3.18
1930 1935 8.635765 AATACTTGTCTTTCTAGGCATTTCAA 57.364 30.769 0.00 0.00 35.56 2.69
1931 1936 8.635765 AAATACTTGTCTTTCTAGGCATTTCA 57.364 30.769 0.00 0.00 35.56 2.69
1933 1938 9.178758 CCTAAATACTTGTCTTTCTAGGCATTT 57.821 33.333 0.00 0.00 35.56 2.32
1934 1939 8.548877 TCCTAAATACTTGTCTTTCTAGGCATT 58.451 33.333 0.00 0.00 35.56 3.56
1935 1940 8.090788 TCCTAAATACTTGTCTTTCTAGGCAT 57.909 34.615 0.00 0.00 35.56 4.40
1936 1941 7.490657 TCCTAAATACTTGTCTTTCTAGGCA 57.509 36.000 0.00 0.00 33.22 4.75
1937 1942 7.010275 CGTTCCTAAATACTTGTCTTTCTAGGC 59.990 40.741 0.00 0.00 0.00 3.93
1938 1943 7.491696 CCGTTCCTAAATACTTGTCTTTCTAGG 59.508 40.741 0.00 0.00 0.00 3.02
1939 1944 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
1940 1945 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
1941 1946 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
1942 1947 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
1943 1948 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
1944 1949 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
1945 1950 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
1946 1951 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
1947 1952 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
1948 1953 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
1949 1954 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
1950 1955 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
1951 1956 5.136105 TCTACTCCCTCCGTTCCTAAATAC 58.864 45.833 0.00 0.00 0.00 1.89
1952 1957 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
1953 1958 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
1954 1959 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
1955 1960 3.629087 CTTCTACTCCCTCCGTTCCTAA 58.371 50.000 0.00 0.00 0.00 2.69
1956 1961 2.686118 GCTTCTACTCCCTCCGTTCCTA 60.686 54.545 0.00 0.00 0.00 2.94
1957 1962 1.960953 GCTTCTACTCCCTCCGTTCCT 60.961 57.143 0.00 0.00 0.00 3.36
1958 1963 0.460722 GCTTCTACTCCCTCCGTTCC 59.539 60.000 0.00 0.00 0.00 3.62
1959 1964 1.476477 AGCTTCTACTCCCTCCGTTC 58.524 55.000 0.00 0.00 0.00 3.95
1960 1965 2.025131 ACTAGCTTCTACTCCCTCCGTT 60.025 50.000 0.00 0.00 0.00 4.44
1961 1966 1.565288 ACTAGCTTCTACTCCCTCCGT 59.435 52.381 0.00 0.00 0.00 4.69
1962 1967 2.351706 ACTAGCTTCTACTCCCTCCG 57.648 55.000 0.00 0.00 0.00 4.63
1963 1968 5.051409 TCTTACTAGCTTCTACTCCCTCC 57.949 47.826 0.00 0.00 0.00 4.30
1964 1969 5.067954 CCTCTTACTAGCTTCTACTCCCTC 58.932 50.000 0.00 0.00 0.00 4.30
1965 1970 4.141111 CCCTCTTACTAGCTTCTACTCCCT 60.141 50.000 0.00 0.00 0.00 4.20
1966 1971 4.146564 CCCTCTTACTAGCTTCTACTCCC 58.853 52.174 0.00 0.00 0.00 4.30
1967 1972 4.581409 CACCCTCTTACTAGCTTCTACTCC 59.419 50.000 0.00 0.00 0.00 3.85
1968 1973 4.581409 CCACCCTCTTACTAGCTTCTACTC 59.419 50.000 0.00 0.00 0.00 2.59
1969 1974 4.230041 TCCACCCTCTTACTAGCTTCTACT 59.770 45.833 0.00 0.00 0.00 2.57
1988 1993 9.995003 AGAATAGAAAGATAGATTGTCATCCAC 57.005 33.333 0.00 0.00 0.00 4.02
2123 2128 5.220931 GGACCATGAAGCATGTTTCTCATAC 60.221 44.000 21.00 10.82 39.94 2.39
2142 2147 0.602638 GCATCGTCACAACTGGACCA 60.603 55.000 0.00 0.00 31.55 4.02
2156 2161 2.413112 AGTCGAAACAATCTGTGCATCG 59.587 45.455 0.00 0.00 34.92 3.84
2170 2175 9.725019 AAGATAATGGCATTCATATAGTCGAAA 57.275 29.630 17.41 0.00 34.44 3.46
2171 2176 9.725019 AAAGATAATGGCATTCATATAGTCGAA 57.275 29.630 17.41 0.00 34.44 3.71
2240 2245 5.307976 TGATGCACCTTAAGATACTATGGCT 59.692 40.000 3.36 0.00 0.00 4.75
2244 2249 7.659390 GCTTTCTGATGCACCTTAAGATACTAT 59.341 37.037 3.36 0.00 0.00 2.12
2367 2372 5.365025 AGCAAAGATACTAGCAGAATGAGGA 59.635 40.000 0.00 0.00 39.69 3.71
2395 2400 9.186323 CATCTTCATTACTAACTGAATCCTACG 57.814 37.037 0.00 0.00 31.39 3.51
2472 2477 5.693814 CATTTTTCTCTCAAGGACGGAAAG 58.306 41.667 0.00 0.00 0.00 2.62
2533 2538 8.902806 CAATCCTATAAAGCATGGTTTTAGACA 58.097 33.333 26.32 9.97 0.00 3.41
2605 2610 3.118811 GCACAGCAGGAAAGAGACTAGAT 60.119 47.826 0.00 0.00 0.00 1.98
2731 2736 2.957491 TGGACCTTGTTTGTTGCAAG 57.043 45.000 0.00 0.00 42.00 4.01
2871 2888 8.533657 TGAATAATCAGGACAAAATGAGCAAAT 58.466 29.630 0.00 0.00 0.00 2.32
2890 2907 9.974980 AACGGTACAATTTCAAAAGTGAATAAT 57.025 25.926 9.64 0.00 43.29 1.28
2948 2965 5.048846 ACTAATAAAGCCCGTGGATGATT 57.951 39.130 0.00 0.00 0.00 2.57
3184 3201 3.382048 TCAGAATGATGAGCATCTCCG 57.618 47.619 11.37 0.00 42.56 4.63
3202 3219 0.325933 CTGGCTTCACAGGGACATCA 59.674 55.000 0.00 0.00 34.84 3.07
3212 3229 1.946768 TGTTGTTACAGCTGGCTTCAC 59.053 47.619 19.93 9.48 0.00 3.18
3262 3279 1.941999 GCCCAGCTTCATCAGGTTGC 61.942 60.000 0.00 0.00 0.00 4.17
3278 3295 0.455815 GGTTCATGTTCGAATGGCCC 59.544 55.000 0.00 0.00 0.00 5.80
3586 3603 0.396974 CTCTAGGTGGCTCTGCTCCT 60.397 60.000 10.24 10.24 36.96 3.69
3668 3685 1.792757 TTGGGGAGAGGCATTGCAGT 61.793 55.000 11.39 0.00 0.00 4.40
3780 3800 1.647629 GCTGATGCTGCATTCCTCG 59.352 57.895 17.36 5.10 36.03 4.63
3798 3818 4.811024 TCCTAGCTTCTTCATTATGTTGCG 59.189 41.667 0.00 0.00 0.00 4.85
3954 3974 3.623060 GCACTTTTCTGGCATATCTTCGA 59.377 43.478 0.00 0.00 0.00 3.71
3962 3982 2.574006 TCTGAGCACTTTTCTGGCAT 57.426 45.000 0.00 0.00 0.00 4.40
4003 4023 8.633075 ATTCAAACAGCAAATATTATTCCACG 57.367 30.769 0.00 0.00 0.00 4.94
4011 4031 8.784994 TGCATTTTGATTCAAACAGCAAATATT 58.215 25.926 24.25 0.00 39.02 1.28
4016 4036 6.431278 CATTGCATTTTGATTCAAACAGCAA 58.569 32.000 31.35 31.35 46.63 3.91
4030 4050 3.724732 ATTGGAAGGCCATTGCATTTT 57.275 38.095 5.01 0.00 42.43 1.82
4066 4087 6.940298 AGCTATTCAGGTTTTACTAGTTTGCA 59.060 34.615 0.00 0.00 0.00 4.08
4131 4152 2.281414 TCGGTCGGTCCACGTACA 60.281 61.111 0.00 0.00 44.69 2.90
4189 4210 1.000607 CATACCATCAGGCATGCAAGC 60.001 52.381 21.36 5.09 39.06 4.01
4190 4211 2.578786 TCATACCATCAGGCATGCAAG 58.421 47.619 21.36 11.26 38.37 4.01
4197 4218 3.777106 TCCAAGATCATACCATCAGGC 57.223 47.619 0.00 0.00 39.06 4.85
4198 4219 4.287845 TGGATCCAAGATCATACCATCAGG 59.712 45.833 13.46 0.00 42.21 3.86
4199 4220 5.494390 TGGATCCAAGATCATACCATCAG 57.506 43.478 13.46 0.00 0.00 2.90
4200 4221 5.280830 CCATGGATCCAAGATCATACCATCA 60.281 44.000 20.67 0.00 34.96 3.07
4201 4222 5.045359 TCCATGGATCCAAGATCATACCATC 60.045 44.000 20.67 0.00 34.96 3.51
4202 4223 4.853856 TCCATGGATCCAAGATCATACCAT 59.146 41.667 20.67 0.00 37.16 3.55
4203 4224 4.241981 TCCATGGATCCAAGATCATACCA 58.758 43.478 20.67 0.00 0.00 3.25
4204 4225 4.916041 TCCATGGATCCAAGATCATACC 57.084 45.455 20.67 0.00 0.00 2.73
4205 4226 6.058553 TCATCCATGGATCCAAGATCATAC 57.941 41.667 24.93 0.00 31.62 2.39
4206 4227 6.216868 ACATCATCCATGGATCCAAGATCATA 59.783 38.462 24.93 11.54 36.72 2.15
4207 4228 5.015284 ACATCATCCATGGATCCAAGATCAT 59.985 40.000 24.93 13.22 36.72 2.45
4208 4229 4.352893 ACATCATCCATGGATCCAAGATCA 59.647 41.667 24.93 11.34 36.72 2.92
4209 4230 4.919793 ACATCATCCATGGATCCAAGATC 58.080 43.478 24.93 0.00 36.72 2.75
4210 4231 6.653790 ATACATCATCCATGGATCCAAGAT 57.346 37.500 24.93 19.74 28.36 2.40
4211 4232 6.058553 GATACATCATCCATGGATCCAAGA 57.941 41.667 24.93 18.38 44.65 3.02
4217 4238 6.699242 ACTTGAGATACATCATCCATGGAT 57.301 37.500 22.15 22.15 39.00 3.41
4218 4239 6.293698 CAACTTGAGATACATCATCCATGGA 58.706 40.000 18.88 18.88 36.72 3.41
4219 4240 5.048921 GCAACTTGAGATACATCATCCATGG 60.049 44.000 4.97 4.97 36.72 3.66
4220 4241 5.763698 AGCAACTTGAGATACATCATCCATG 59.236 40.000 0.00 0.00 38.64 3.66
4221 4242 5.938279 AGCAACTTGAGATACATCATCCAT 58.062 37.500 0.00 0.00 33.75 3.41
4222 4243 5.363562 AGCAACTTGAGATACATCATCCA 57.636 39.130 0.00 0.00 33.75 3.41
4223 4244 7.877097 AGATAAGCAACTTGAGATACATCATCC 59.123 37.037 0.00 0.00 33.75 3.51
4280 4301 7.148540 TGCTGATAACAAACACCGACTATTAAC 60.149 37.037 0.00 0.00 0.00 2.01
4302 4348 3.853831 TTGAAGGCATAACATGTGCTG 57.146 42.857 0.00 0.85 42.16 4.41
4325 4371 2.559998 ATTTTGGCCATTAACGCTCG 57.440 45.000 6.09 0.00 0.00 5.03
4351 4405 6.318648 CACCTGAAAATAAGTTAGGCATGCTA 59.681 38.462 18.92 5.20 31.69 3.49
4389 4443 9.765795 CCTTTTTATTTGGTTACATGGTTACAA 57.234 29.630 0.00 0.00 0.00 2.41
4390 4444 8.368668 CCCTTTTTATTTGGTTACATGGTTACA 58.631 33.333 0.00 0.00 0.00 2.41
4391 4445 7.332430 GCCCTTTTTATTTGGTTACATGGTTAC 59.668 37.037 0.00 0.00 0.00 2.50
4393 4447 6.183361 TGCCCTTTTTATTTGGTTACATGGTT 60.183 34.615 0.00 0.00 0.00 3.67
4394 4448 5.308237 TGCCCTTTTTATTTGGTTACATGGT 59.692 36.000 0.00 0.00 0.00 3.55
4395 4449 5.799213 TGCCCTTTTTATTTGGTTACATGG 58.201 37.500 0.00 0.00 0.00 3.66
4396 4450 5.351189 GCTGCCCTTTTTATTTGGTTACATG 59.649 40.000 0.00 0.00 0.00 3.21
4397 4451 5.487433 GCTGCCCTTTTTATTTGGTTACAT 58.513 37.500 0.00 0.00 0.00 2.29
4398 4452 4.262678 GGCTGCCCTTTTTATTTGGTTACA 60.263 41.667 7.66 0.00 0.00 2.41
4399 4453 4.250464 GGCTGCCCTTTTTATTTGGTTAC 58.750 43.478 7.66 0.00 0.00 2.50
4400 4454 3.262151 GGGCTGCCCTTTTTATTTGGTTA 59.738 43.478 30.42 0.00 41.34 2.85
4401 4455 2.039746 GGGCTGCCCTTTTTATTTGGTT 59.960 45.455 30.42 0.00 41.34 3.67
4402 4456 1.628340 GGGCTGCCCTTTTTATTTGGT 59.372 47.619 30.42 0.00 41.34 3.67
4403 4457 1.065491 GGGGCTGCCCTTTTTATTTGG 60.065 52.381 34.99 0.00 44.66 3.28
4404 4458 1.627834 TGGGGCTGCCCTTTTTATTTG 59.372 47.619 34.99 0.00 44.66 2.32
4405 4459 1.908619 CTGGGGCTGCCCTTTTTATTT 59.091 47.619 34.99 0.00 44.66 1.40
4406 4460 1.203300 ACTGGGGCTGCCCTTTTTATT 60.203 47.619 34.99 11.55 44.66 1.40
4407 4461 0.413434 ACTGGGGCTGCCCTTTTTAT 59.587 50.000 34.99 13.71 44.66 1.40
4408 4462 0.541764 CACTGGGGCTGCCCTTTTTA 60.542 55.000 34.99 16.27 44.66 1.52
4409 4463 1.838396 CACTGGGGCTGCCCTTTTT 60.838 57.895 34.99 15.74 44.66 1.94
4410 4464 2.203684 CACTGGGGCTGCCCTTTT 60.204 61.111 34.99 17.53 44.66 2.27
4415 4469 3.643595 TACATGCACTGGGGCTGCC 62.644 63.158 11.05 11.05 33.36 4.85
4416 4470 2.045045 TACATGCACTGGGGCTGC 60.045 61.111 0.00 0.00 35.03 5.25
4417 4471 2.117156 GCTACATGCACTGGGGCTG 61.117 63.158 0.00 0.00 42.31 4.85
4418 4472 2.262774 GAGCTACATGCACTGGGGCT 62.263 60.000 13.29 13.29 45.94 5.19
4419 4473 1.821332 GAGCTACATGCACTGGGGC 60.821 63.158 0.00 0.00 45.94 5.80
4420 4474 1.153086 GGAGCTACATGCACTGGGG 60.153 63.158 0.00 0.00 45.94 4.96
4421 4475 1.153086 GGGAGCTACATGCACTGGG 60.153 63.158 0.00 0.00 45.94 4.45
4422 4476 1.522355 CGGGAGCTACATGCACTGG 60.522 63.158 0.00 0.00 45.94 4.00
4423 4477 4.115279 CGGGAGCTACATGCACTG 57.885 61.111 0.00 0.00 45.94 3.66
4444 4498 4.785453 CTTCCCCAGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
4445 4499 4.101448 CCTTCCCCAGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
4446 4500 3.732849 CCCTTCCCCAGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
4447 4501 2.204151 ACCCTTCCCCAGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
4448 4502 2.125225 GACCCTTCCCCAGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
4449 4503 3.015753 GGACCCTTCCCCAGACCC 61.016 72.222 0.00 0.00 35.57 4.46
4450 4504 3.400054 CGGACCCTTCCCCAGACC 61.400 72.222 0.00 0.00 38.99 3.85
4451 4505 2.284405 TCGGACCCTTCCCCAGAC 60.284 66.667 0.00 0.00 38.99 3.51
4452 4506 2.284405 GTCGGACCCTTCCCCAGA 60.284 66.667 0.00 0.00 38.99 3.86
4453 4507 1.562672 AATGTCGGACCCTTCCCCAG 61.563 60.000 5.55 0.00 38.99 4.45
4454 4508 1.137594 AAATGTCGGACCCTTCCCCA 61.138 55.000 5.55 0.00 38.99 4.96
4455 4509 0.393944 GAAATGTCGGACCCTTCCCC 60.394 60.000 5.55 0.00 38.99 4.81
4456 4510 0.618981 AGAAATGTCGGACCCTTCCC 59.381 55.000 5.55 0.00 38.99 3.97
4457 4511 1.003233 ACAGAAATGTCGGACCCTTCC 59.997 52.381 5.55 0.00 38.77 3.46
4458 4512 2.474410 ACAGAAATGTCGGACCCTTC 57.526 50.000 5.55 8.23 0.00 3.46
4459 4513 3.581332 TCTTACAGAAATGTCGGACCCTT 59.419 43.478 5.55 0.00 0.00 3.95
4460 4514 3.170717 TCTTACAGAAATGTCGGACCCT 58.829 45.455 5.55 0.00 0.00 4.34
4461 4515 3.522553 CTCTTACAGAAATGTCGGACCC 58.477 50.000 5.55 0.00 0.00 4.46
4462 4516 3.522553 CCTCTTACAGAAATGTCGGACC 58.477 50.000 5.55 0.00 0.00 4.46
4463 4517 2.930682 GCCTCTTACAGAAATGTCGGAC 59.069 50.000 0.00 0.00 0.00 4.79
4464 4518 2.832129 AGCCTCTTACAGAAATGTCGGA 59.168 45.455 0.00 0.00 0.00 4.55
4465 4519 2.932614 CAGCCTCTTACAGAAATGTCGG 59.067 50.000 0.00 0.00 0.00 4.79
4466 4520 3.589988 ACAGCCTCTTACAGAAATGTCG 58.410 45.455 0.00 0.00 0.00 4.35
4467 4521 5.106515 GGAAACAGCCTCTTACAGAAATGTC 60.107 44.000 0.00 0.00 0.00 3.06
4468 4522 4.762251 GGAAACAGCCTCTTACAGAAATGT 59.238 41.667 0.00 0.00 0.00 2.71
4469 4523 4.761739 TGGAAACAGCCTCTTACAGAAATG 59.238 41.667 0.00 0.00 35.01 2.32
4470 4524 4.985538 TGGAAACAGCCTCTTACAGAAAT 58.014 39.130 0.00 0.00 35.01 2.17
4471 4525 4.431416 TGGAAACAGCCTCTTACAGAAA 57.569 40.909 0.00 0.00 35.01 2.52
4485 4539 1.476110 CGGGTTCAAGTCCTGGAAACA 60.476 52.381 0.00 0.00 32.36 2.83
4486 4540 1.235724 CGGGTTCAAGTCCTGGAAAC 58.764 55.000 0.00 0.00 0.00 2.78
4487 4541 0.841289 ACGGGTTCAAGTCCTGGAAA 59.159 50.000 0.00 0.00 35.79 3.13
4488 4542 0.107831 CACGGGTTCAAGTCCTGGAA 59.892 55.000 0.00 0.00 35.79 3.53
4489 4543 0.761323 TCACGGGTTCAAGTCCTGGA 60.761 55.000 0.00 0.00 35.79 3.86
4490 4544 0.602905 GTCACGGGTTCAAGTCCTGG 60.603 60.000 0.00 0.00 35.79 4.45
4491 4545 0.602905 GGTCACGGGTTCAAGTCCTG 60.603 60.000 0.00 0.00 37.36 3.86
4492 4546 0.763223 AGGTCACGGGTTCAAGTCCT 60.763 55.000 0.00 0.00 0.00 3.85
4493 4547 0.320508 GAGGTCACGGGTTCAAGTCC 60.321 60.000 0.00 0.00 0.00 3.85
4494 4548 0.391597 TGAGGTCACGGGTTCAAGTC 59.608 55.000 0.00 0.00 0.00 3.01
4495 4549 1.056660 ATGAGGTCACGGGTTCAAGT 58.943 50.000 0.00 0.00 0.00 3.16
4496 4550 1.442769 CATGAGGTCACGGGTTCAAG 58.557 55.000 0.00 0.00 0.00 3.02
4497 4551 0.036164 CCATGAGGTCACGGGTTCAA 59.964 55.000 0.00 0.00 0.00 2.69
4498 4552 1.676968 CCATGAGGTCACGGGTTCA 59.323 57.895 0.00 0.00 0.00 3.18
4499 4553 4.617875 CCATGAGGTCACGGGTTC 57.382 61.111 0.00 0.00 0.00 3.62
4509 4563 1.310933 GCTGCCTTGTGACCATGAGG 61.311 60.000 0.00 0.00 42.21 3.86
4510 4564 0.607217 TGCTGCCTTGTGACCATGAG 60.607 55.000 0.00 0.00 0.00 2.90
4511 4565 0.607217 CTGCTGCCTTGTGACCATGA 60.607 55.000 0.00 0.00 0.00 3.07
4512 4566 1.880894 CTGCTGCCTTGTGACCATG 59.119 57.895 0.00 0.00 0.00 3.66
4513 4567 1.975407 GCTGCTGCCTTGTGACCAT 60.975 57.895 3.85 0.00 0.00 3.55
4514 4568 2.595463 GCTGCTGCCTTGTGACCA 60.595 61.111 3.85 0.00 0.00 4.02
4515 4569 1.458639 AAAGCTGCTGCCTTGTGACC 61.459 55.000 12.44 0.00 40.80 4.02
4516 4570 1.068954 GTAAAGCTGCTGCCTTGTGAC 60.069 52.381 12.44 0.00 40.80 3.67
4517 4571 1.238439 GTAAAGCTGCTGCCTTGTGA 58.762 50.000 12.44 0.00 40.80 3.58
4518 4572 0.242017 GGTAAAGCTGCTGCCTTGTG 59.758 55.000 12.44 0.00 40.80 3.33
4519 4573 0.178992 TGGTAAAGCTGCTGCCTTGT 60.179 50.000 12.44 0.00 40.80 3.16
4520 4574 0.242017 GTGGTAAAGCTGCTGCCTTG 59.758 55.000 12.44 0.00 40.80 3.61
4521 4575 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.000 12.44 8.34 40.80 4.35
4522 4576 0.607489 CAGTGGTAAAGCTGCTGCCT 60.607 55.000 12.44 2.45 40.80 4.75
4523 4577 1.878775 CAGTGGTAAAGCTGCTGCC 59.121 57.895 12.44 7.07 40.80 4.85
4528 4582 1.394917 CTTAGCGCAGTGGTAAAGCTG 59.605 52.381 11.47 0.00 39.86 4.24
4529 4583 1.676014 CCTTAGCGCAGTGGTAAAGCT 60.676 52.381 11.47 0.00 39.86 3.74
4530 4584 0.727398 CCTTAGCGCAGTGGTAAAGC 59.273 55.000 11.47 0.00 39.86 3.51
4531 4585 0.727398 GCCTTAGCGCAGTGGTAAAG 59.273 55.000 11.47 2.53 39.86 1.85
4532 4586 0.323629 AGCCTTAGCGCAGTGGTAAA 59.676 50.000 11.47 0.00 46.67 2.01
4533 4587 0.108329 GAGCCTTAGCGCAGTGGTAA 60.108 55.000 11.47 5.53 46.67 2.85
4534 4588 1.515954 GAGCCTTAGCGCAGTGGTA 59.484 57.895 11.47 0.00 46.67 3.25
4535 4589 2.266055 GAGCCTTAGCGCAGTGGT 59.734 61.111 11.47 0.00 46.67 4.16
4536 4590 2.512515 GGAGCCTTAGCGCAGTGG 60.513 66.667 11.47 9.34 46.67 4.00
4537 4591 2.512515 GGGAGCCTTAGCGCAGTG 60.513 66.667 11.47 0.00 46.67 3.66
4538 4592 3.787001 GGGGAGCCTTAGCGCAGT 61.787 66.667 11.47 0.00 46.67 4.40
4539 4593 2.932130 GAAGGGGAGCCTTAGCGCAG 62.932 65.000 11.47 0.00 46.67 5.18
4540 4594 3.009115 AAGGGGAGCCTTAGCGCA 61.009 61.111 11.47 0.00 46.67 6.09
4541 4595 2.203084 GAAGGGGAGCCTTAGCGC 60.203 66.667 0.00 0.00 46.67 5.92
4542 4596 0.744771 GTTGAAGGGGAGCCTTAGCG 60.745 60.000 0.00 0.00 46.67 4.26
4543 4597 0.394488 GGTTGAAGGGGAGCCTTAGC 60.394 60.000 0.00 0.00 40.32 3.09
4544 4598 0.991920 TGGTTGAAGGGGAGCCTTAG 59.008 55.000 0.00 0.00 0.00 2.18
4545 4599 1.284785 CATGGTTGAAGGGGAGCCTTA 59.715 52.381 0.00 0.00 0.00 2.69
4546 4600 0.040204 CATGGTTGAAGGGGAGCCTT 59.960 55.000 0.00 0.00 0.00 4.35
4547 4601 1.142688 ACATGGTTGAAGGGGAGCCT 61.143 55.000 0.00 0.00 0.00 4.58
4548 4602 0.623723 TACATGGTTGAAGGGGAGCC 59.376 55.000 0.00 0.00 0.00 4.70
4549 4603 2.092323 GTTACATGGTTGAAGGGGAGC 58.908 52.381 0.00 0.00 0.00 4.70
4550 4604 2.041081 TGGTTACATGGTTGAAGGGGAG 59.959 50.000 0.00 0.00 0.00 4.30
4551 4605 2.066592 TGGTTACATGGTTGAAGGGGA 58.933 47.619 0.00 0.00 0.00 4.81
4552 4606 2.595750 TGGTTACATGGTTGAAGGGG 57.404 50.000 0.00 0.00 0.00 4.79
4553 4607 6.597832 TTATTTGGTTACATGGTTGAAGGG 57.402 37.500 0.00 0.00 0.00 3.95
4599 4653 1.834263 AGACCTGCTATTGTCTCCCAC 59.166 52.381 0.00 0.00 37.24 4.61
4664 4719 5.169992 AGGTTTAGGGGTGTTGTGTATAC 57.830 43.478 0.00 0.00 0.00 1.47
4727 4782 0.324368 TGGCTAGGACGGTGATGTCT 60.324 55.000 0.00 0.00 38.91 3.41
4729 4784 0.614979 AGTGGCTAGGACGGTGATGT 60.615 55.000 0.00 0.00 0.00 3.06
4822 4877 2.872440 GCAGAGCAGATCATGAGGATGG 60.872 54.545 0.09 0.00 36.00 3.51
4876 4931 1.406887 CCCTGATGAACGGTTGTAGGG 60.407 57.143 0.00 6.07 33.70 3.53
4879 4934 1.276989 GGTCCCTGATGAACGGTTGTA 59.723 52.381 0.00 0.00 0.00 2.41
4979 5034 3.074538 ACTTTGCTACCCTGGTTGATCTT 59.925 43.478 1.81 0.00 0.00 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.