Multiple sequence alignment - TraesCS5A01G149000

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BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G149000 chr5A 100.000 5586 0 0 1 5586 326664642 326659057 0.000000e+00 10316.0
1 TraesCS5A01G149000 chr5A 92.749 331 24 0 2514 2844 366235147 366234817 3.910000e-131 479.0
2 TraesCS5A01G149000 chr5A 97.321 112 3 0 4712 4823 575329660 575329549 2.050000e-44 191.0
3 TraesCS5A01G149000 chr5A 97.248 109 3 0 4716 4824 596484976 596485084 9.560000e-43 185.0
4 TraesCS5A01G149000 chr5A 94.737 114 6 0 4716 4829 2407108 2406995 1.600000e-40 178.0
5 TraesCS5A01G149000 chr5A 87.500 72 7 2 1724 1794 366260123 366260193 1.290000e-11 82.4
6 TraesCS5A01G149000 chr5A 97.674 43 1 0 5065 5107 326659533 326659575 2.160000e-09 75.0
7 TraesCS5A01G149000 chr5B 93.766 2278 79 20 955 3211 275679139 275676904 0.000000e+00 3362.0
8 TraesCS5A01G149000 chr5B 96.339 874 26 4 3375 4247 275676923 275676055 0.000000e+00 1432.0
9 TraesCS5A01G149000 chr5B 96.112 463 18 0 4256 4718 275676011 275675549 0.000000e+00 756.0
10 TraesCS5A01G149000 chr5B 98.256 172 2 1 3209 3380 660145810 660145640 3.270000e-77 300.0
11 TraesCS5A01G149000 chr5B 98.246 171 2 1 3210 3380 403717740 403717909 1.180000e-76 298.0
12 TraesCS5A01G149000 chr5B 98.246 171 2 1 3210 3380 515818841 515818672 1.180000e-76 298.0
13 TraesCS5A01G149000 chr5B 89.062 192 12 3 5404 5586 479039395 479039586 4.350000e-56 230.0
14 TraesCS5A01G149000 chr5B 89.062 192 12 3 5404 5586 479039853 479040044 4.350000e-56 230.0
15 TraesCS5A01G149000 chr5B 96.800 125 3 1 4898 5022 275675495 275675372 2.040000e-49 207.0
16 TraesCS5A01G149000 chr5B 94.792 96 4 1 5151 5245 275675331 275675236 1.250000e-31 148.0
17 TraesCS5A01G149000 chr5B 93.827 81 2 1 4821 4898 275675552 275675472 9.830000e-23 119.0
18 TraesCS5A01G149000 chr5B 100.000 46 0 0 5062 5107 564992409 564992364 9.970000e-13 86.1
19 TraesCS5A01G149000 chr5B 100.000 41 0 0 5067 5107 564992363 564992403 6.000000e-10 76.8
20 TraesCS5A01G149000 chr5B 82.432 74 7 5 1727 1800 44223289 44223222 6.040000e-05 60.2
21 TraesCS5A01G149000 chr5D 95.348 1784 52 8 929 2706 230023278 230025036 0.000000e+00 2806.0
22 TraesCS5A01G149000 chr5D 93.961 861 39 7 3375 4225 230027429 230028286 0.000000e+00 1290.0
23 TraesCS5A01G149000 chr5D 96.332 518 15 2 2694 3211 230026935 230027448 0.000000e+00 848.0
24 TraesCS5A01G149000 chr5D 91.845 466 16 4 4256 4718 230028403 230028849 1.020000e-176 630.0
25 TraesCS5A01G149000 chr5D 84.100 239 13 10 4821 5054 230028846 230029064 2.040000e-49 207.0
26 TraesCS5A01G149000 chr5D 90.071 141 11 3 5151 5290 230029107 230029245 4.450000e-41 180.0
27 TraesCS5A01G149000 chr5D 94.737 95 3 2 4952 5045 450201474 450201567 4.510000e-31 147.0
28 TraesCS5A01G149000 chr5D 83.908 87 13 1 1726 1811 481255905 481255991 1.290000e-11 82.4
29 TraesCS5A01G149000 chr5D 91.489 47 3 1 5541 5586 421478544 421478590 4.670000e-06 63.9
30 TraesCS5A01G149000 chr5D 91.489 47 3 1 5541 5586 421478992 421479038 4.670000e-06 63.9
31 TraesCS5A01G149000 chr3A 98.188 938 15 2 1 936 389504672 389505609 0.000000e+00 1637.0
32 TraesCS5A01G149000 chr3A 97.248 109 3 0 4715 4823 191251973 191251865 9.560000e-43 185.0
33 TraesCS5A01G149000 chr3A 95.238 42 1 1 5065 5106 655540456 655540416 1.300000e-06 65.8
34 TraesCS5A01G149000 chr3A 93.023 43 2 1 5069 5111 655540416 655540457 1.680000e-05 62.1
35 TraesCS5A01G149000 chr3A 100.000 30 0 0 5060 5089 16072043 16072014 7.820000e-04 56.5
36 TraesCS5A01G149000 chr3A 94.595 37 1 1 4214 4250 450013222 450013257 7.820000e-04 56.5
37 TraesCS5A01G149000 chr3A 88.636 44 4 1 5046 5089 256865439 256865481 1.000000e-02 52.8
38 TraesCS5A01G149000 chr7A 98.389 931 13 2 1 929 260315311 260316241 0.000000e+00 1635.0
39 TraesCS5A01G149000 chr7A 97.849 930 18 2 1 928 672321945 672321016 0.000000e+00 1605.0
40 TraesCS5A01G149000 chr7A 96.296 108 4 0 4716 4823 31064473 31064580 1.600000e-40 178.0
41 TraesCS5A01G149000 chr7A 86.486 111 13 2 4956 5064 685512655 685512545 2.730000e-23 121.0
42 TraesCS5A01G149000 chr2B 98.280 930 13 3 1 928 216945188 216946116 0.000000e+00 1626.0
43 TraesCS5A01G149000 chr2B 93.598 328 21 0 2517 2844 136170536 136170209 1.810000e-134 490.0
44 TraesCS5A01G149000 chr2B 87.640 89 8 3 1727 1813 680200091 680200178 3.560000e-17 100.0
45 TraesCS5A01G149000 chr6A 97.667 943 16 5 1 938 3684212 3683271 0.000000e+00 1615.0
46 TraesCS5A01G149000 chr6A 93.333 330 22 0 2517 2846 381089027 381088698 6.500000e-134 488.0
47 TraesCS5A01G149000 chr6A 98.256 172 1 2 3210 3380 127185172 127185342 3.270000e-77 300.0
48 TraesCS5A01G149000 chr6A 97.688 173 3 1 3208 3380 101869940 101870111 4.230000e-76 296.0
49 TraesCS5A01G149000 chr6A 97.674 172 3 1 3209 3380 79952227 79952057 1.520000e-75 294.0
50 TraesCS5A01G149000 chr6A 95.652 184 5 3 3197 3380 9366115 9365935 5.470000e-75 292.0
51 TraesCS5A01G149000 chr6A 98.182 110 2 0 4715 4824 594981127 594981236 5.710000e-45 193.0
52 TraesCS5A01G149000 chr6A 98.165 109 2 0 4716 4824 540825135 540825243 2.050000e-44 191.0
53 TraesCS5A01G149000 chr6A 98.148 108 2 0 4716 4823 321275358 321275465 7.390000e-44 189.0
54 TraesCS5A01G149000 chr6A 96.330 109 4 0 4716 4824 600702108 600702216 4.450000e-41 180.0
55 TraesCS5A01G149000 chr6A 94.444 54 2 1 1727 1779 54179471 54179418 1.290000e-11 82.4
56 TraesCS5A01G149000 chr6A 94.340 53 2 1 1727 1778 34179549 34179601 4.640000e-11 80.5
57 TraesCS5A01G149000 chr6A 97.778 45 1 0 1727 1771 25690565 25690521 1.670000e-10 78.7
58 TraesCS5A01G149000 chr4A 97.854 932 18 2 1 930 625185912 625184981 0.000000e+00 1609.0
59 TraesCS5A01G149000 chr4A 94.099 322 18 1 2514 2835 115566917 115567237 6.500000e-134 488.0
60 TraesCS5A01G149000 chr4A 81.875 320 34 10 5280 5586 735593725 735594033 1.200000e-61 248.0
61 TraesCS5A01G149000 chr4A 97.248 109 3 0 4716 4824 589502941 589502833 9.560000e-43 185.0
62 TraesCS5A01G149000 chr4A 97.647 85 1 1 4955 5039 601044781 601044864 1.620000e-30 145.0
63 TraesCS5A01G149000 chr4A 98.750 80 0 1 4956 5034 598442892 598442971 2.100000e-29 141.0
64 TraesCS5A01G149000 chr4A 94.737 38 1 1 4214 4250 467263417 467263380 2.170000e-04 58.4
65 TraesCS5A01G149000 chr4A 94.444 36 2 0 4214 4249 583526486 583526521 7.820000e-04 56.5
66 TraesCS5A01G149000 chr4A 100.000 28 0 0 5062 5089 584543178 584543205 1.000000e-02 52.8
67 TraesCS5A01G149000 chr7B 97.742 930 19 2 1 928 583380277 583379348 0.000000e+00 1600.0
68 TraesCS5A01G149000 chr7B 93.750 96 6 0 4949 5044 668219217 668219312 1.620000e-30 145.0
69 TraesCS5A01G149000 chr7B 97.727 44 1 0 1725 1768 119584010 119584053 6.000000e-10 76.8
70 TraesCS5A01G149000 chr7B 82.955 88 11 1 1727 1814 149610339 149610256 6.000000e-10 76.8
71 TraesCS5A01G149000 chr1B 97.740 929 19 2 2 928 431182184 431183112 0.000000e+00 1598.0
72 TraesCS5A01G149000 chr1B 96.296 108 4 0 4716 4823 654080415 654080308 1.600000e-40 178.0
73 TraesCS5A01G149000 chr1B 93.333 45 1 2 4206 4250 20174187 20174229 1.300000e-06 65.8
74 TraesCS5A01G149000 chr3B 97.340 940 23 2 1 938 788949128 788948189 0.000000e+00 1596.0
75 TraesCS5A01G149000 chr3B 85.556 90 12 1 1727 1815 482487885 482487796 5.960000e-15 93.5
76 TraesCS5A01G149000 chr3B 94.444 36 2 0 4215 4250 431583444 431583479 7.820000e-04 56.5
77 TraesCS5A01G149000 chr2D 93.313 329 20 2 2517 2844 249892117 249891790 8.410000e-133 484.0
78 TraesCS5A01G149000 chr2D 82.353 289 28 9 5311 5586 344556065 344556343 4.350000e-56 230.0
79 TraesCS5A01G149000 chr2D 97.436 78 2 0 4963 5040 491374524 491374447 3.510000e-27 134.0
80 TraesCS5A01G149000 chr2D 87.324 71 8 1 1727 1796 310405798 310405868 4.640000e-11 80.5
81 TraesCS5A01G149000 chr2D 97.778 45 1 0 1727 1771 170617967 170617923 1.670000e-10 78.7
82 TraesCS5A01G149000 chr2D 94.595 37 1 1 4212 4248 32188102 32188067 7.820000e-04 56.5
83 TraesCS5A01G149000 chr6D 92.988 328 23 0 2517 2844 267533134 267532807 3.910000e-131 479.0
84 TraesCS5A01G149000 chr6D 97.576 165 3 1 3216 3380 128903241 128903078 1.180000e-71 281.0
85 TraesCS5A01G149000 chr6D 97.561 164 3 1 3217 3380 317477211 317477373 4.260000e-71 279.0
86 TraesCS5A01G149000 chr6D 86.131 137 13 5 5280 5412 423459799 423459933 5.830000e-30 143.0
87 TraesCS5A01G149000 chr6D 95.181 83 3 1 4953 5034 24624305 24624387 4.540000e-26 130.0
88 TraesCS5A01G149000 chr6D 94.805 77 4 0 4953 5029 310124447 310124371 2.730000e-23 121.0
89 TraesCS5A01G149000 chr6D 91.765 85 6 1 4955 5039 24995434 24995351 3.540000e-22 117.0
90 TraesCS5A01G149000 chr6D 100.000 29 0 0 4220 4248 461966789 461966817 3.000000e-03 54.7
91 TraesCS5A01G149000 chr6D 100.000 28 0 0 5063 5090 342467204 342467231 1.000000e-02 52.8
92 TraesCS5A01G149000 chr4D 92.012 338 26 1 2514 2850 47532837 47533174 1.820000e-129 473.0
93 TraesCS5A01G149000 chr4D 97.661 171 3 1 3210 3380 478512183 478512352 5.470000e-75 292.0
94 TraesCS5A01G149000 chr4D 97.561 164 4 0 3213 3376 254241200 254241363 1.180000e-71 281.0
95 TraesCS5A01G149000 chr4D 97.576 165 3 1 3216 3380 405455126 405455289 1.180000e-71 281.0
96 TraesCS5A01G149000 chr4D 95.455 176 7 1 3205 3380 443515137 443515311 4.260000e-71 279.0
97 TraesCS5A01G149000 chr4D 95.858 169 6 1 3212 3380 331632567 331632400 7.130000e-69 272.0
98 TraesCS5A01G149000 chr4D 95.506 89 3 1 4956 5043 5319448 5319536 2.100000e-29 141.0
99 TraesCS5A01G149000 chr4D 96.471 85 1 2 4957 5040 3595886 3595803 7.550000e-29 139.0
100 TraesCS5A01G149000 chr4D 97.500 80 1 1 4956 5034 5236533 5236454 9.760000e-28 135.0
101 TraesCS5A01G149000 chr4D 97.500 80 1 1 4956 5034 5244944 5244865 9.760000e-28 135.0
102 TraesCS5A01G149000 chr4D 94.937 79 3 1 4956 5034 97384961 97384884 7.600000e-24 122.0
103 TraesCS5A01G149000 chr4D 95.833 72 3 0 4963 5034 3590777 3590706 3.540000e-22 117.0
104 TraesCS5A01G149000 chr4D 93.333 45 3 0 1727 1771 403158519 403158563 3.610000e-07 67.6
105 TraesCS5A01G149000 chr4D 92.857 42 3 0 1727 1768 500391339 500391380 1.680000e-05 62.1
106 TraesCS5A01G149000 chr4D 100.000 30 0 0 4221 4250 98933387 98933416 7.820000e-04 56.5
107 TraesCS5A01G149000 chr4D 100.000 29 0 0 4220 4248 7465087 7465059 3.000000e-03 54.7
108 TraesCS5A01G149000 chr4D 96.875 32 1 0 1724 1755 58265919 58265950 3.000000e-03 54.7
109 TraesCS5A01G149000 chr4D 96.875 32 1 0 5063 5094 60134662 60134693 3.000000e-03 54.7
110 TraesCS5A01G149000 chr1D 91.570 344 28 1 2514 2856 321675230 321674887 1.820000e-129 473.0
111 TraesCS5A01G149000 chr1D 97.006 167 4 1 3210 3375 366097686 366097520 4.260000e-71 279.0
112 TraesCS5A01G149000 chr1D 97.674 43 1 0 1726 1768 445196770 445196812 2.160000e-09 75.0
113 TraesCS5A01G149000 chr1D 97.222 36 1 0 1727 1762 253526055 253526020 1.680000e-05 62.1
114 TraesCS5A01G149000 chr1D 100.000 30 0 0 4219 4248 325484581 325484552 7.820000e-04 56.5
115 TraesCS5A01G149000 chr1D 88.889 45 5 0 1727 1771 477288485 477288441 7.820000e-04 56.5
116 TraesCS5A01G149000 chr1D 92.308 39 2 1 4211 4248 22976629 22976591 3.000000e-03 54.7
117 TraesCS5A01G149000 chr1D 100.000 29 0 0 4222 4250 233793712 233793740 3.000000e-03 54.7
118 TraesCS5A01G149000 chr2A 85.804 317 24 9 5280 5586 722813846 722813541 3.250000e-82 316.0
119 TraesCS5A01G149000 chr6B 97.175 177 3 2 3211 3387 439399882 439399708 1.180000e-76 298.0
120 TraesCS5A01G149000 chr6B 97.701 174 2 2 3207 3380 641890522 641890693 1.180000e-76 298.0
121 TraesCS5A01G149000 chr6B 92.453 53 3 1 1727 1778 62403532 62403480 2.160000e-09 75.0
122 TraesCS5A01G149000 chr4B 98.246 171 2 1 3210 3380 193970493 193970662 1.180000e-76 298.0
123 TraesCS5A01G149000 chr4B 98.246 171 2 1 3210 3380 575905373 575905542 1.180000e-76 298.0
124 TraesCS5A01G149000 chr4B 97.688 173 2 2 3209 3380 295687669 295687840 4.230000e-76 296.0
125 TraesCS5A01G149000 chr4B 98.235 170 2 1 3211 3380 304888081 304887913 4.230000e-76 296.0
126 TraesCS5A01G149000 chr4B 96.552 116 3 1 4712 4827 139519501 139519615 2.050000e-44 191.0
127 TraesCS5A01G149000 chr4B 96.296 108 4 0 4716 4823 801216 801323 1.600000e-40 178.0
128 TraesCS5A01G149000 chr4B 95.413 109 5 0 4715 4823 74428710 74428602 2.070000e-39 174.0
129 TraesCS5A01G149000 chr4B 98.765 81 0 1 4955 5034 5460739 5460819 5.830000e-30 143.0
130 TraesCS5A01G149000 chr4B 97.590 83 2 0 4952 5034 9357912 9357830 5.830000e-30 143.0
131 TraesCS5A01G149000 chr4B 97.468 79 2 0 4956 5034 139133841 139133763 9.760000e-28 135.0
132 TraesCS5A01G149000 chr4B 95.062 81 3 1 4954 5034 5465075 5465154 5.870000e-25 126.0
133 TraesCS5A01G149000 chr4B 97.500 40 1 0 1729 1768 20277522 20277561 1.000000e-07 69.4
134 TraesCS5A01G149000 chr4B 96.875 32 1 0 5063 5094 89304603 89304634 3.000000e-03 54.7
135 TraesCS5A01G149000 chr1A 98.235 170 2 1 3211 3380 538399285 538399453 4.230000e-76 296.0
136 TraesCS5A01G149000 chr1A 97.159 176 4 1 3205 3380 583789126 583789300 4.230000e-76 296.0
137 TraesCS5A01G149000 chr1A 98.225 169 2 1 3212 3380 83827917 83828084 1.520000e-75 294.0
138 TraesCS5A01G149000 chr1A 97.661 171 3 1 3210 3380 3255907 3255738 5.470000e-75 292.0
139 TraesCS5A01G149000 chr1A 97.647 170 3 1 3211 3380 363424709 363424877 1.970000e-74 291.0
140 TraesCS5A01G149000 chr1A 97.093 172 4 1 3211 3382 101379111 101379281 7.080000e-74 289.0
141 TraesCS5A01G149000 chr1A 95.370 108 5 0 4716 4823 558548324 558548431 7.440000e-39 172.0
142 TraesCS5A01G149000 chr1A 92.920 113 8 0 4712 4824 500044313 500044201 1.240000e-36 165.0
143 TraesCS5A01G149000 chr1A 100.000 30 0 0 4219 4248 419033837 419033866 7.820000e-04 56.5
144 TraesCS5A01G149000 chr1A 100.000 30 0 0 4221 4250 446542896 446542867 7.820000e-04 56.5
145 TraesCS5A01G149000 chrUn 97.647 170 3 1 3211 3380 284001555 284001723 1.970000e-74 291.0
146 TraesCS5A01G149000 chrUn 96.045 177 4 2 3204 3380 395339773 395339946 9.160000e-73 285.0
147 TraesCS5A01G149000 chrUn 96.471 170 5 1 3211 3380 12801962 12801794 4.260000e-71 279.0
148 TraesCS5A01G149000 chrUn 95.833 168 6 1 3213 3380 314724050 314724216 2.560000e-68 270.0
149 TraesCS5A01G149000 chrUn 94.737 171 7 2 3210 3380 277314046 277314214 1.190000e-66 265.0
150 TraesCS5A01G149000 chrUn 95.679 162 6 1 3213 3374 379839253 379839413 5.550000e-65 259.0
151 TraesCS5A01G149000 chrUn 95.679 162 6 1 3213 3374 379897927 379898087 5.550000e-65 259.0
152 TraesCS5A01G149000 chrUn 94.152 171 7 3 3210 3380 15977962 15978129 2.000000e-64 257.0
153 TraesCS5A01G149000 chrUn 93.605 172 9 2 3209 3380 40706730 40706899 7.180000e-64 255.0
154 TraesCS5A01G149000 chrUn 93.103 174 10 2 3207 3380 87980741 87980912 2.580000e-63 254.0
155 TraesCS5A01G149000 chrUn 93.567 171 9 2 3210 3380 88100107 88100275 2.580000e-63 254.0
156 TraesCS5A01G149000 chrUn 80.864 324 34 11 5280 5586 8831509 8831821 4.350000e-56 230.0
157 TraesCS5A01G149000 chrUn 94.643 112 6 0 4712 4823 333269598 333269487 2.070000e-39 174.0
158 TraesCS5A01G149000 chrUn 94.737 76 4 0 4712 4787 247781475 247781550 9.830000e-23 119.0
159 TraesCS5A01G149000 chrUn 90.566 53 4 1 1727 1778 101887428 101887480 1.000000e-07 69.4
160 TraesCS5A01G149000 chrUn 97.500 40 1 0 1729 1768 308089981 308089942 1.000000e-07 69.4
161 TraesCS5A01G149000 chrUn 100.000 30 0 0 5060 5089 307259689 307259660 7.820000e-04 56.5
162 TraesCS5A01G149000 chrUn 94.444 36 0 1 5054 5089 405825507 405825474 3.000000e-03 54.7
163 TraesCS5A01G149000 chrUn 94.444 36 0 1 5054 5089 473080463 473080430 3.000000e-03 54.7
164 TraesCS5A01G149000 chrUn 100.000 28 0 0 4220 4247 19234360 19234387 1.000000e-02 52.8
165 TraesCS5A01G149000 chrUn 100.000 28 0 0 4221 4248 346286327 346286300 1.000000e-02 52.8
166 TraesCS5A01G149000 chrUn 100.000 28 0 0 4222 4249 416910952 416910925 1.000000e-02 52.8
167 TraesCS5A01G149000 chr7D 92.391 92 7 0 4953 5044 593027267 593027176 1.260000e-26 132.0
168 TraesCS5A01G149000 chr7D 97.059 34 1 0 4217 4250 549514222 549514189 2.170000e-04 58.4
169 TraesCS5A01G149000 chr7D 94.444 36 2 0 4213 4248 531607952 531607987 7.820000e-04 56.5
170 TraesCS5A01G149000 chr3D 84.706 85 11 2 1727 1811 370110024 370110106 3.590000e-12 84.2
171 TraesCS5A01G149000 chr3D 95.349 43 2 0 1728 1770 429084906 429084948 1.000000e-07 69.4
172 TraesCS5A01G149000 chr3D 90.196 51 3 2 1727 1775 336537885 336537935 1.300000e-06 65.8
173 TraesCS5A01G149000 chr3D 92.500 40 3 0 4222 4261 456926364 456926325 2.170000e-04 58.4
174 TraesCS5A01G149000 chr3D 100.000 30 0 0 4219 4248 89637272 89637301 7.820000e-04 56.5
175 TraesCS5A01G149000 chr3D 100.000 28 0 0 5062 5089 427225836 427225809 1.000000e-02 52.8
176 TraesCS5A01G149000 chr3D 100.000 28 0 0 5062 5089 445028257 445028284 1.000000e-02 52.8
177 TraesCS5A01G149000 chr3D 100.000 28 0 0 5062 5089 562693529 562693556 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G149000 chr5A 326659057 326664642 5585 True 10316.0 10316 100.000000 1 5586 1 chr5A.!!$R2 5585
1 TraesCS5A01G149000 chr5B 275675236 275679139 3903 True 1004.0 3362 95.272667 955 5245 6 chr5B.!!$R5 4290
2 TraesCS5A01G149000 chr5B 479039395 479040044 649 False 230.0 230 89.062000 5404 5586 2 chr5B.!!$F3 182
3 TraesCS5A01G149000 chr5D 230023278 230029245 5967 False 993.5 2806 91.942833 929 5290 6 chr5D.!!$F3 4361
4 TraesCS5A01G149000 chr3A 389504672 389505609 937 False 1637.0 1637 98.188000 1 936 1 chr3A.!!$F2 935
5 TraesCS5A01G149000 chr7A 260315311 260316241 930 False 1635.0 1635 98.389000 1 929 1 chr7A.!!$F2 928
6 TraesCS5A01G149000 chr7A 672321016 672321945 929 True 1605.0 1605 97.849000 1 928 1 chr7A.!!$R1 927
7 TraesCS5A01G149000 chr2B 216945188 216946116 928 False 1626.0 1626 98.280000 1 928 1 chr2B.!!$F1 927
8 TraesCS5A01G149000 chr6A 3683271 3684212 941 True 1615.0 1615 97.667000 1 938 1 chr6A.!!$R1 937
9 TraesCS5A01G149000 chr4A 625184981 625185912 931 True 1609.0 1609 97.854000 1 930 1 chr4A.!!$R3 929
10 TraesCS5A01G149000 chr7B 583379348 583380277 929 True 1600.0 1600 97.742000 1 928 1 chr7B.!!$R2 927
11 TraesCS5A01G149000 chr1B 431182184 431183112 928 False 1598.0 1598 97.740000 2 928 1 chr1B.!!$F2 926
12 TraesCS5A01G149000 chr3B 788948189 788949128 939 True 1596.0 1596 97.340000 1 938 1 chr3B.!!$R2 937

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
965 970 0.173935 TAAGTCGCATACGGTGGGTG 59.826 55.0 6.94 0.0 41.26 4.61 F
1494 1507 0.036732 TCCACAAGATTCGCCTGCTT 59.963 50.0 0.00 0.0 0.00 3.91 F
3200 5143 0.107993 TGCTCACTGGACATGCTAGC 60.108 55.0 8.10 8.1 0.00 3.42 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2372 2391 1.152777 CAGCACACCCAGTTTCCCA 60.153 57.895 0.0 0.0 0.0 4.37 R
3333 5276 0.036164 CCATGAGGTCACGGGTTCAA 59.964 55.000 0.0 0.0 0.0 2.69 R
5089 7211 0.042131 ACACTCCCTCCGTCCCATAA 59.958 55.000 0.0 0.0 0.0 1.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
127 130 0.451383 GCGCCAATTGAGCACATGTA 59.549 50.000 17.19 0.00 0.00 2.29
223 226 4.083324 GCATATGTGTGTGCAACTAGTGTT 60.083 41.667 4.29 0.00 41.57 3.32
438 442 6.183360 GCGACTAGACTACATTACAAGAGGAA 60.183 42.308 0.00 0.00 0.00 3.36
963 968 2.012937 TTTAAGTCGCATACGGTGGG 57.987 50.000 0.00 1.47 41.82 4.61
964 969 0.896923 TTAAGTCGCATACGGTGGGT 59.103 50.000 6.94 0.00 41.26 4.51
965 970 0.173935 TAAGTCGCATACGGTGGGTG 59.826 55.000 6.94 0.00 41.26 4.61
966 971 2.510691 GTCGCATACGGTGGGTGG 60.511 66.667 6.94 0.00 41.26 4.61
1082 1095 1.073098 CTAAACCCCACCTCCACCTT 58.927 55.000 0.00 0.00 0.00 3.50
1098 1111 0.903942 CCTTCAAGCTCTCTCCTGCT 59.096 55.000 0.00 0.00 41.82 4.24
1110 1123 0.324183 CTCCTGCTCACTCCCTCTCA 60.324 60.000 0.00 0.00 0.00 3.27
1494 1507 0.036732 TCCACAAGATTCGCCTGCTT 59.963 50.000 0.00 0.00 0.00 3.91
1583 1596 9.256228 GGTATATCCTAGTAATTCACCTCATCA 57.744 37.037 0.00 0.00 0.00 3.07
1686 1702 6.992063 ATGTGACATTTCATCTAACAGACC 57.008 37.500 0.00 0.00 33.11 3.85
1701 1717 3.942829 ACAGACCAACATGTCAATCGAT 58.057 40.909 0.00 0.00 37.73 3.59
1718 1734 3.664107 TCGATGGCAATATTAGGACAGC 58.336 45.455 0.00 0.00 0.00 4.40
1720 1736 3.434641 CGATGGCAATATTAGGACAGCTG 59.565 47.826 13.48 13.48 0.00 4.24
1732 1748 1.066787 GGACAGCTGACAACTACTCCC 60.067 57.143 23.35 1.72 0.00 4.30
1733 1749 1.896465 GACAGCTGACAACTACTCCCT 59.104 52.381 23.35 0.00 0.00 4.20
1736 1752 1.203187 AGCTGACAACTACTCCCTCCA 60.203 52.381 0.00 0.00 0.00 3.86
1737 1753 1.623811 GCTGACAACTACTCCCTCCAA 59.376 52.381 0.00 0.00 0.00 3.53
1741 1757 2.838202 GACAACTACTCCCTCCAATCCA 59.162 50.000 0.00 0.00 0.00 3.41
1742 1758 3.456277 GACAACTACTCCCTCCAATCCAT 59.544 47.826 0.00 0.00 0.00 3.41
1752 1768 7.234355 ACTCCCTCCAATCCATATTAATTGTC 58.766 38.462 0.00 0.00 32.20 3.18
1771 1787 3.805422 TGTCGCTGGTTTAGTACAACTTG 59.195 43.478 0.00 0.00 0.00 3.16
1772 1788 3.805971 GTCGCTGGTTTAGTACAACTTGT 59.194 43.478 0.00 0.00 0.00 3.16
1773 1789 4.984161 GTCGCTGGTTTAGTACAACTTGTA 59.016 41.667 0.00 0.00 0.00 2.41
1802 1818 7.915293 ATAAACGGCAATTAATATCGATGGA 57.085 32.000 8.54 0.00 0.00 3.41
1814 1830 8.945195 TTAATATCGATGGAAGGGAGTAGTAA 57.055 34.615 8.54 0.00 0.00 2.24
1819 1835 5.897824 TCGATGGAAGGGAGTAGTAATCTTT 59.102 40.000 0.00 0.00 0.00 2.52
1840 1856 1.597742 AGCTAACTGTGTGGTGCTTG 58.402 50.000 0.00 0.00 0.00 4.01
2135 2151 6.723977 AGAGAGGGAGATTATGAAGGTATGTC 59.276 42.308 0.00 0.00 0.00 3.06
2143 2159 8.546083 AGATTATGAAGGTATGTCTGAGAACT 57.454 34.615 0.00 0.00 0.00 3.01
2225 2241 0.896940 ACTGGCTGAATGTGGCTTGG 60.897 55.000 0.00 0.00 0.00 3.61
2362 2378 5.479306 GCCTCAACATTTGTACTAGAGTGA 58.521 41.667 0.00 0.00 0.00 3.41
2380 2399 4.097418 AGTGAGCTAGTATGTGGGAAACT 58.903 43.478 0.00 0.00 0.00 2.66
2433 2452 4.566759 TCACTCGATTTGCAGTAGTAATGC 59.433 41.667 15.47 15.47 44.11 3.56
2598 2617 0.460987 GAAGCTCCAGTGCATAGCGT 60.461 55.000 0.00 0.00 41.19 5.07
2823 4765 3.910989 ACTTGTTTGGGACTAAAGGCTT 58.089 40.909 0.00 0.00 0.00 4.35
2824 4766 4.286707 ACTTGTTTGGGACTAAAGGCTTT 58.713 39.130 17.76 17.76 0.00 3.51
2825 4767 4.099419 ACTTGTTTGGGACTAAAGGCTTTG 59.901 41.667 22.32 13.97 0.00 2.77
2865 4807 2.004583 TATCCAAGCTTCGGTTCACG 57.995 50.000 12.71 0.00 46.11 4.35
3064 5006 0.249398 ACGGCTACATCAGTGGGTTC 59.751 55.000 0.00 0.00 0.00 3.62
3086 5028 6.607004 TCTCTACTAGCCAAGCTTTAACTT 57.393 37.500 0.00 0.00 40.44 2.66
3160 5103 6.371809 TGTTTTACTGCTTTCACCTTAGTG 57.628 37.500 0.00 0.00 46.00 2.74
3172 5115 4.751060 TCACCTTAGTGTGTTTATAGGCG 58.249 43.478 0.00 0.00 44.83 5.52
3196 5139 0.801251 GTTCTGCTCACTGGACATGC 59.199 55.000 0.00 0.00 0.00 4.06
3197 5140 0.689055 TTCTGCTCACTGGACATGCT 59.311 50.000 0.00 0.00 0.00 3.79
3198 5141 1.560505 TCTGCTCACTGGACATGCTA 58.439 50.000 0.00 0.00 0.00 3.49
3199 5142 1.479730 TCTGCTCACTGGACATGCTAG 59.520 52.381 0.00 0.00 0.00 3.42
3200 5143 0.107993 TGCTCACTGGACATGCTAGC 60.108 55.000 8.10 8.10 0.00 3.42
3201 5144 0.177604 GCTCACTGGACATGCTAGCT 59.822 55.000 17.23 0.00 0.00 3.32
3202 5145 1.406614 GCTCACTGGACATGCTAGCTT 60.407 52.381 17.23 6.81 0.00 3.74
3203 5146 2.159043 GCTCACTGGACATGCTAGCTTA 60.159 50.000 17.23 0.00 0.00 3.09
3204 5147 3.494048 GCTCACTGGACATGCTAGCTTAT 60.494 47.826 17.23 0.00 0.00 1.73
3205 5148 4.701765 CTCACTGGACATGCTAGCTTATT 58.298 43.478 17.23 0.00 0.00 1.40
3206 5149 4.445453 TCACTGGACATGCTAGCTTATTG 58.555 43.478 17.23 10.62 0.00 1.90
3207 5150 4.080919 TCACTGGACATGCTAGCTTATTGT 60.081 41.667 17.23 13.66 0.00 2.71
3208 5151 4.637534 CACTGGACATGCTAGCTTATTGTT 59.362 41.667 17.23 0.00 0.00 2.83
3209 5152 5.817296 CACTGGACATGCTAGCTTATTGTTA 59.183 40.000 17.23 7.16 0.00 2.41
3210 5153 6.316140 CACTGGACATGCTAGCTTATTGTTAA 59.684 38.462 17.23 6.27 0.00 2.01
3211 5154 6.884295 ACTGGACATGCTAGCTTATTGTTAAA 59.116 34.615 17.23 4.23 0.00 1.52
3212 5155 7.393234 ACTGGACATGCTAGCTTATTGTTAAAA 59.607 33.333 17.23 0.00 0.00 1.52
3213 5156 8.116651 TGGACATGCTAGCTTATTGTTAAAAA 57.883 30.769 17.23 0.00 0.00 1.94
3236 5179 4.230603 CAGCCCCACTGCATGTAG 57.769 61.111 9.50 9.50 40.19 2.74
3237 5180 2.117156 CAGCCCCACTGCATGTAGC 61.117 63.158 11.09 0.00 40.19 3.58
3238 5181 2.273449 GCCCCACTGCATGTAGCT 59.727 61.111 11.09 0.00 45.94 3.32
3239 5182 1.821332 GCCCCACTGCATGTAGCTC 60.821 63.158 11.09 0.00 45.94 4.09
3240 5183 1.153086 CCCCACTGCATGTAGCTCC 60.153 63.158 11.09 0.00 45.94 4.70
3241 5184 1.153086 CCCACTGCATGTAGCTCCC 60.153 63.158 11.09 0.00 45.94 4.30
3242 5185 1.522355 CCACTGCATGTAGCTCCCG 60.522 63.158 11.09 0.00 45.94 5.14
3243 5186 2.176273 CACTGCATGTAGCTCCCGC 61.176 63.158 11.09 0.00 45.94 6.13
3245 5188 1.153289 CTGCATGTAGCTCCCGCTT 60.153 57.895 0.00 0.00 46.47 4.68
3246 5189 1.434622 CTGCATGTAGCTCCCGCTTG 61.435 60.000 0.00 0.00 46.47 4.01
3247 5190 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
3248 5191 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
3251 5194 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
3263 5206 4.785453 GCGCAGGGTCTGGGGAAG 62.785 72.222 0.30 0.00 43.28 3.46
3264 5207 4.101448 CGCAGGGTCTGGGGAAGG 62.101 72.222 4.35 0.00 40.11 3.46
3265 5208 3.732849 GCAGGGTCTGGGGAAGGG 61.733 72.222 0.00 0.00 31.21 3.95
3266 5209 2.204151 CAGGGTCTGGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
3267 5210 2.125225 AGGGTCTGGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
3268 5211 3.015753 GGGTCTGGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
3269 5212 3.400054 GGTCTGGGGAAGGGTCCG 61.400 72.222 0.00 0.00 46.04 4.79
3270 5213 2.284405 GTCTGGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
3271 5214 2.284405 TCTGGGGAAGGGTCCGAC 60.284 66.667 0.00 0.00 46.04 4.79
3272 5215 3.400054 CTGGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
3273 5216 4.257810 TGGGGAAGGGTCCGACCA 62.258 66.667 19.43 0.00 46.04 4.02
3274 5217 3.714001 GGGGAAGGGTCCGACCAC 61.714 72.222 19.43 8.70 46.04 4.16
3275 5218 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
3276 5219 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
3277 5220 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
3278 5221 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
3279 5222 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
3280 5223 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
3281 5224 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
3291 5234 4.986054 ACCACTTTGGGTCTATTGTACA 57.014 40.909 0.00 0.00 43.37 2.90
3292 5235 4.648651 ACCACTTTGGGTCTATTGTACAC 58.351 43.478 0.00 0.00 43.37 2.90
3293 5236 4.103469 ACCACTTTGGGTCTATTGTACACA 59.897 41.667 0.00 0.00 43.37 3.72
3294 5237 4.695455 CCACTTTGGGTCTATTGTACACAG 59.305 45.833 0.00 0.00 30.52 3.66
3295 5238 4.154195 CACTTTGGGTCTATTGTACACAGC 59.846 45.833 0.00 0.00 30.52 4.40
3296 5239 3.343941 TTGGGTCTATTGTACACAGCC 57.656 47.619 0.00 0.00 30.52 4.85
3297 5240 2.546899 TGGGTCTATTGTACACAGCCT 58.453 47.619 0.00 0.00 0.00 4.58
3298 5241 2.910319 TGGGTCTATTGTACACAGCCTT 59.090 45.455 0.00 0.00 0.00 4.35
3299 5242 3.329520 TGGGTCTATTGTACACAGCCTTT 59.670 43.478 0.00 0.00 0.00 3.11
3300 5243 3.939592 GGGTCTATTGTACACAGCCTTTC 59.060 47.826 0.00 0.00 0.00 2.62
3301 5244 3.939592 GGTCTATTGTACACAGCCTTTCC 59.060 47.826 0.00 0.00 0.00 3.13
3302 5245 3.939592 GTCTATTGTACACAGCCTTTCCC 59.060 47.826 0.00 0.00 0.00 3.97
3303 5246 3.844211 TCTATTGTACACAGCCTTTCCCT 59.156 43.478 0.00 0.00 0.00 4.20
3304 5247 5.027460 TCTATTGTACACAGCCTTTCCCTA 58.973 41.667 0.00 0.00 0.00 3.53
3305 5248 3.412237 TTGTACACAGCCTTTCCCTAC 57.588 47.619 0.00 0.00 0.00 3.18
3306 5249 2.331166 TGTACACAGCCTTTCCCTACA 58.669 47.619 0.00 0.00 0.00 2.74
3307 5250 2.910319 TGTACACAGCCTTTCCCTACAT 59.090 45.455 0.00 0.00 0.00 2.29
3308 5251 3.329520 TGTACACAGCCTTTCCCTACATT 59.670 43.478 0.00 0.00 0.00 2.71
3309 5252 3.525800 ACACAGCCTTTCCCTACATTT 57.474 42.857 0.00 0.00 0.00 2.32
3310 5253 3.421844 ACACAGCCTTTCCCTACATTTC 58.578 45.455 0.00 0.00 0.00 2.17
3311 5254 3.074538 ACACAGCCTTTCCCTACATTTCT 59.925 43.478 0.00 0.00 0.00 2.52
3312 5255 3.441572 CACAGCCTTTCCCTACATTTCTG 59.558 47.826 0.00 0.00 0.00 3.02
3313 5256 3.074538 ACAGCCTTTCCCTACATTTCTGT 59.925 43.478 0.00 0.00 39.49 3.41
3314 5257 4.288626 ACAGCCTTTCCCTACATTTCTGTA 59.711 41.667 0.00 0.00 36.79 2.74
3315 5258 5.222048 ACAGCCTTTCCCTACATTTCTGTAA 60.222 40.000 0.00 0.00 37.41 2.41
3316 5259 5.355350 CAGCCTTTCCCTACATTTCTGTAAG 59.645 44.000 0.00 0.00 37.41 2.34
3317 5260 5.250774 AGCCTTTCCCTACATTTCTGTAAGA 59.749 40.000 0.00 0.00 44.68 2.10
3329 5272 3.685139 TCTGTAAGAGGCTGTTTCCAG 57.315 47.619 0.90 9.48 38.67 3.86
3330 5273 2.303022 TCTGTAAGAGGCTGTTTCCAGG 59.697 50.000 17.71 5.83 38.67 4.45
3331 5274 2.303022 CTGTAAGAGGCTGTTTCCAGGA 59.697 50.000 0.90 0.00 35.89 3.86
3332 5275 2.038557 TGTAAGAGGCTGTTTCCAGGAC 59.961 50.000 0.90 0.00 39.22 3.85
3333 5276 1.439543 AAGAGGCTGTTTCCAGGACT 58.560 50.000 0.00 0.00 39.22 3.85
3334 5277 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
3335 5278 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
3336 5279 1.072331 GAGGCTGTTTCCAGGACTTGA 59.928 52.381 0.00 0.00 39.22 3.02
3337 5280 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
3338 5281 1.609072 GGCTGTTTCCAGGACTTGAAC 59.391 52.381 0.00 0.00 39.22 3.18
3339 5282 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
3340 5283 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
3341 5284 1.235724 GTTTCCAGGACTTGAACCCG 58.764 55.000 0.00 0.00 0.00 5.28
3342 5285 0.841289 TTTCCAGGACTTGAACCCGT 59.159 50.000 0.00 0.00 0.00 5.28
3343 5286 0.107831 TTCCAGGACTTGAACCCGTG 59.892 55.000 0.00 0.00 0.00 4.94
3344 5287 0.761323 TCCAGGACTTGAACCCGTGA 60.761 55.000 0.00 0.00 0.00 4.35
3345 5288 0.602905 CCAGGACTTGAACCCGTGAC 60.603 60.000 0.00 0.00 0.00 3.67
3346 5289 0.602905 CAGGACTTGAACCCGTGACC 60.603 60.000 0.00 0.00 0.00 4.02
3347 5290 0.763223 AGGACTTGAACCCGTGACCT 60.763 55.000 0.00 0.00 0.00 3.85
3348 5291 0.320508 GGACTTGAACCCGTGACCTC 60.321 60.000 0.00 0.00 0.00 3.85
3349 5292 0.391597 GACTTGAACCCGTGACCTCA 59.608 55.000 0.00 0.00 0.00 3.86
3350 5293 1.002087 GACTTGAACCCGTGACCTCAT 59.998 52.381 0.00 0.00 0.00 2.90
3351 5294 1.270839 ACTTGAACCCGTGACCTCATG 60.271 52.381 0.00 0.00 0.00 3.07
3362 5305 2.154139 ACCTCATGGTCACAAGGCA 58.846 52.632 0.00 0.00 44.78 4.75
3363 5306 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85
3364 5307 1.310933 CCTCATGGTCACAAGGCAGC 61.311 60.000 0.00 0.00 0.00 5.25
3365 5308 0.607217 CTCATGGTCACAAGGCAGCA 60.607 55.000 0.00 0.00 0.00 4.41
3366 5309 0.607217 TCATGGTCACAAGGCAGCAG 60.607 55.000 0.00 0.00 0.00 4.24
3367 5310 1.975407 ATGGTCACAAGGCAGCAGC 60.975 57.895 0.00 0.00 41.10 5.25
3368 5311 2.282040 GGTCACAAGGCAGCAGCT 60.282 61.111 0.00 0.00 41.70 4.24
3369 5312 1.900498 GGTCACAAGGCAGCAGCTT 60.900 57.895 0.00 0.00 41.70 3.74
3370 5313 1.458639 GGTCACAAGGCAGCAGCTTT 61.459 55.000 0.00 0.00 41.17 3.51
3371 5314 1.238439 GTCACAAGGCAGCAGCTTTA 58.762 50.000 0.00 0.00 38.07 1.85
3372 5315 1.068954 GTCACAAGGCAGCAGCTTTAC 60.069 52.381 0.00 0.00 38.07 2.01
3373 5316 0.242017 CACAAGGCAGCAGCTTTACC 59.758 55.000 0.00 0.00 38.07 2.85
3374 5317 0.178992 ACAAGGCAGCAGCTTTACCA 60.179 50.000 0.00 0.00 38.07 3.25
3375 5318 0.242017 CAAGGCAGCAGCTTTACCAC 59.758 55.000 0.00 0.00 38.07 4.16
3376 5319 0.178992 AAGGCAGCAGCTTTACCACA 60.179 50.000 0.00 0.00 38.40 4.17
3377 5320 0.038744 AGGCAGCAGCTTTACCACAT 59.961 50.000 0.00 0.00 41.70 3.21
3378 5321 0.171903 GGCAGCAGCTTTACCACATG 59.828 55.000 0.00 0.00 41.70 3.21
3454 5398 8.319881 AGTACATATGCATCTAGCTTCATGATT 58.680 33.333 0.19 0.00 45.94 2.57
3604 5548 6.152661 ACTCAAAAACAAGGTCAATCACAAGA 59.847 34.615 0.00 0.00 0.00 3.02
3607 5551 2.146342 ACAAGGTCAATCACAAGAGCG 58.854 47.619 0.00 0.00 37.34 5.03
3719 5663 6.875926 ATCTTTCGCAAAAAGTAATCATGC 57.124 33.333 8.07 0.00 0.00 4.06
3870 5814 9.152327 ACTAGTGATGATTCTGGATTCTAATCA 57.848 33.333 0.00 5.22 42.17 2.57
3909 5853 4.574674 TGGTGCAGTTTCTTCTGGATAT 57.425 40.909 0.00 0.00 38.00 1.63
3949 5893 9.671279 TCACACAATGTCAATCATATTAGTCTT 57.329 29.630 0.00 0.00 35.48 3.01
4075 6019 9.690913 TCTCAGTCCTTTCATTGATCATTTAAT 57.309 29.630 0.00 0.00 0.00 1.40
4244 6198 8.716674 AGTACTCCCTCCGTATCAAAATATAA 57.283 34.615 0.00 0.00 0.00 0.98
4247 6201 7.668492 ACTCCCTCCGTATCAAAATATAAGAC 58.332 38.462 0.00 0.00 0.00 3.01
4248 6202 7.289317 ACTCCCTCCGTATCAAAATATAAGACA 59.711 37.037 0.00 0.00 0.00 3.41
4250 6204 8.311836 TCCCTCCGTATCAAAATATAAGACATC 58.688 37.037 0.00 0.00 0.00 3.06
4251 6205 8.094548 CCCTCCGTATCAAAATATAAGACATCA 58.905 37.037 0.00 0.00 0.00 3.07
4273 6262 9.330063 CATCATATATTTTGGTGTACTGTCTGT 57.670 33.333 0.00 0.00 0.00 3.41
4362 6462 2.240279 GACCTGCTACTCATACGGGAT 58.760 52.381 0.00 0.00 33.80 3.85
4471 6574 2.159296 TCGGTCATTGGTATCACAGTCG 60.159 50.000 0.00 0.00 0.00 4.18
4611 6714 1.355916 GCCGTCGAGCTTCGTCTAT 59.644 57.895 0.00 0.00 41.35 1.98
4612 6715 0.930742 GCCGTCGAGCTTCGTCTATG 60.931 60.000 0.00 0.00 41.35 2.23
4613 6716 0.930742 CCGTCGAGCTTCGTCTATGC 60.931 60.000 0.00 0.00 41.35 3.14
4614 6717 0.248094 CGTCGAGCTTCGTCTATGCA 60.248 55.000 0.00 0.00 41.35 3.96
4615 6718 1.471964 GTCGAGCTTCGTCTATGCAG 58.528 55.000 0.00 0.00 41.35 4.41
4616 6719 1.064208 GTCGAGCTTCGTCTATGCAGA 59.936 52.381 0.00 0.00 41.35 4.26
4617 6720 1.332065 TCGAGCTTCGTCTATGCAGAG 59.668 52.381 0.69 0.69 41.35 3.35
4618 6721 1.332065 CGAGCTTCGTCTATGCAGAGA 59.668 52.381 7.02 7.02 34.72 3.10
4619 6722 2.223363 CGAGCTTCGTCTATGCAGAGAA 60.223 50.000 13.62 0.00 34.72 2.87
4620 6723 3.371168 GAGCTTCGTCTATGCAGAGAAG 58.629 50.000 13.62 15.44 38.15 2.85
4621 6724 2.100584 AGCTTCGTCTATGCAGAGAAGG 59.899 50.000 21.44 13.11 36.99 3.46
4622 6725 2.099921 GCTTCGTCTATGCAGAGAAGGA 59.900 50.000 21.44 13.92 36.99 3.36
4623 6726 3.243704 GCTTCGTCTATGCAGAGAAGGAT 60.244 47.826 21.44 0.00 36.99 3.24
4624 6727 3.998099 TCGTCTATGCAGAGAAGGATG 57.002 47.619 21.44 6.89 0.00 3.51
4705 6822 2.481952 GTCAAGTGAGAACTGCCATGTC 59.518 50.000 0.00 0.00 0.00 3.06
4718 6835 7.676043 AGAACTGCCATGTCTATATATGGTACT 59.324 37.037 5.89 0.00 44.20 2.73
4719 6836 7.411486 ACTGCCATGTCTATATATGGTACTC 57.589 40.000 5.89 0.00 44.20 2.59
4720 6837 6.381420 ACTGCCATGTCTATATATGGTACTCC 59.619 42.308 5.89 0.00 44.20 3.85
4721 6838 5.661312 TGCCATGTCTATATATGGTACTCCC 59.339 44.000 5.89 0.00 44.20 4.30
4722 6839 5.900123 GCCATGTCTATATATGGTACTCCCT 59.100 44.000 5.89 0.00 44.20 4.20
4723 6840 6.041069 GCCATGTCTATATATGGTACTCCCTC 59.959 46.154 5.89 0.00 44.20 4.30
4724 6841 7.358263 CCATGTCTATATATGGTACTCCCTCT 58.642 42.308 0.00 0.00 39.05 3.69
4725 6842 7.841729 CCATGTCTATATATGGTACTCCCTCTT 59.158 40.741 0.00 0.00 39.05 2.85
4726 6843 9.261035 CATGTCTATATATGGTACTCCCTCTTT 57.739 37.037 0.00 0.00 0.00 2.52
4727 6844 9.845214 ATGTCTATATATGGTACTCCCTCTTTT 57.155 33.333 0.00 0.00 0.00 2.27
4728 6845 9.310449 TGTCTATATATGGTACTCCCTCTTTTC 57.690 37.037 0.00 0.00 0.00 2.29
4729 6846 9.310449 GTCTATATATGGTACTCCCTCTTTTCA 57.690 37.037 0.00 0.00 0.00 2.69
4730 6847 9.310449 TCTATATATGGTACTCCCTCTTTTCAC 57.690 37.037 0.00 0.00 0.00 3.18
4731 6848 9.315363 CTATATATGGTACTCCCTCTTTTCACT 57.685 37.037 0.00 0.00 0.00 3.41
4732 6849 6.893020 ATATGGTACTCCCTCTTTTCACTT 57.107 37.500 0.00 0.00 0.00 3.16
4733 6850 7.989947 ATATGGTACTCCCTCTTTTCACTTA 57.010 36.000 0.00 0.00 0.00 2.24
4734 6851 6.893020 ATGGTACTCCCTCTTTTCACTTAT 57.107 37.500 0.00 0.00 0.00 1.73
4735 6852 7.989947 ATGGTACTCCCTCTTTTCACTTATA 57.010 36.000 0.00 0.00 0.00 0.98
4736 6853 7.989947 TGGTACTCCCTCTTTTCACTTATAT 57.010 36.000 0.00 0.00 0.00 0.86
4737 6854 9.670442 ATGGTACTCCCTCTTTTCACTTATATA 57.330 33.333 0.00 0.00 0.00 0.86
4738 6855 9.496710 TGGTACTCCCTCTTTTCACTTATATAA 57.503 33.333 0.00 0.00 0.00 0.98
4739 6856 9.984190 GGTACTCCCTCTTTTCACTTATATAAG 57.016 37.037 18.99 18.99 39.18 1.73
4742 6859 8.414778 ACTCCCTCTTTTCACTTATATAAGACG 58.585 37.037 25.83 16.70 37.08 4.18
4743 6860 8.302515 TCCCTCTTTTCACTTATATAAGACGT 57.697 34.615 25.83 4.92 37.08 4.34
4744 6861 8.755977 TCCCTCTTTTCACTTATATAAGACGTT 58.244 33.333 25.83 3.75 37.08 3.99
4745 6862 9.379791 CCCTCTTTTCACTTATATAAGACGTTT 57.620 33.333 25.83 3.40 37.08 3.60
4762 6879 8.658499 AAGACGTTTTAGTAAATTCAGACAGT 57.342 30.769 0.00 0.00 0.00 3.55
4763 6880 8.073355 AGACGTTTTAGTAAATTCAGACAGTG 57.927 34.615 0.00 0.00 0.00 3.66
4764 6881 7.709613 AGACGTTTTAGTAAATTCAGACAGTGT 59.290 33.333 0.00 0.00 0.00 3.55
4765 6882 8.876275 ACGTTTTAGTAAATTCAGACAGTGTA 57.124 30.769 0.00 0.00 0.00 2.90
4766 6883 8.758715 ACGTTTTAGTAAATTCAGACAGTGTAC 58.241 33.333 0.00 0.00 0.00 2.90
4767 6884 8.975439 CGTTTTAGTAAATTCAGACAGTGTACT 58.025 33.333 0.00 0.00 0.00 2.73
4773 6890 9.477484 AGTAAATTCAGACAGTGTACTAAACAG 57.523 33.333 0.00 0.00 39.29 3.16
4774 6891 9.257651 GTAAATTCAGACAGTGTACTAAACAGT 57.742 33.333 0.00 0.00 42.76 3.55
4775 6892 8.732746 AAATTCAGACAGTGTACTAAACAGTT 57.267 30.769 0.00 0.00 39.88 3.16
4776 6893 7.948278 ATTCAGACAGTGTACTAAACAGTTC 57.052 36.000 0.00 0.00 39.88 3.01
4777 6894 6.459670 TCAGACAGTGTACTAAACAGTTCA 57.540 37.500 0.00 0.00 39.88 3.18
4778 6895 6.869695 TCAGACAGTGTACTAAACAGTTCAA 58.130 36.000 0.00 0.00 39.88 2.69
4779 6896 7.324935 TCAGACAGTGTACTAAACAGTTCAAA 58.675 34.615 0.00 0.00 39.88 2.69
4780 6897 7.277098 TCAGACAGTGTACTAAACAGTTCAAAC 59.723 37.037 0.00 0.00 39.88 2.93
4781 6898 7.277981 CAGACAGTGTACTAAACAGTTCAAACT 59.722 37.037 0.00 0.00 39.88 2.66
4782 6899 7.491696 AGACAGTGTACTAAACAGTTCAAACTC 59.508 37.037 0.00 0.00 39.88 3.01
4783 6900 7.101054 ACAGTGTACTAAACAGTTCAAACTCA 58.899 34.615 0.00 0.00 39.88 3.41
4784 6901 7.277981 ACAGTGTACTAAACAGTTCAAACTCAG 59.722 37.037 0.00 0.00 39.88 3.35
4785 6902 6.258068 AGTGTACTAAACAGTTCAAACTCAGC 59.742 38.462 0.00 0.00 38.70 4.26
4786 6903 6.258068 GTGTACTAAACAGTTCAAACTCAGCT 59.742 38.462 0.00 0.00 39.29 4.24
4787 6904 5.741388 ACTAAACAGTTCAAACTCAGCTG 57.259 39.130 7.63 7.63 37.08 4.24
4788 6905 5.186198 ACTAAACAGTTCAAACTCAGCTGT 58.814 37.500 14.67 0.00 41.51 4.40
4789 6906 4.622701 AAACAGTTCAAACTCAGCTGTC 57.377 40.909 14.67 0.00 39.19 3.51
4790 6907 3.550437 ACAGTTCAAACTCAGCTGTCT 57.450 42.857 14.67 0.00 37.08 3.41
4791 6908 3.201290 ACAGTTCAAACTCAGCTGTCTG 58.799 45.455 14.67 8.01 41.67 3.51
4792 6909 3.118629 ACAGTTCAAACTCAGCTGTCTGA 60.119 43.478 14.67 9.35 46.43 3.27
4798 6915 4.361253 TCAGCTGTCTGAAACGCC 57.639 55.556 14.67 0.00 45.69 5.68
4799 6916 1.748403 TCAGCTGTCTGAAACGCCT 59.252 52.632 14.67 0.00 45.69 5.52
4800 6917 0.106708 TCAGCTGTCTGAAACGCCTT 59.893 50.000 14.67 0.00 45.69 4.35
4801 6918 1.343142 TCAGCTGTCTGAAACGCCTTA 59.657 47.619 14.67 0.00 45.69 2.69
4802 6919 2.028112 TCAGCTGTCTGAAACGCCTTAT 60.028 45.455 14.67 0.00 45.69 1.73
4803 6920 3.194755 TCAGCTGTCTGAAACGCCTTATA 59.805 43.478 14.67 0.00 45.69 0.98
4804 6921 3.932710 CAGCTGTCTGAAACGCCTTATAA 59.067 43.478 5.25 0.00 42.95 0.98
4805 6922 4.391830 CAGCTGTCTGAAACGCCTTATAAA 59.608 41.667 5.25 0.00 42.95 1.40
4806 6923 5.001232 AGCTGTCTGAAACGCCTTATAAAA 58.999 37.500 0.00 0.00 0.00 1.52
4807 6924 5.472137 AGCTGTCTGAAACGCCTTATAAAAA 59.528 36.000 0.00 0.00 0.00 1.94
4808 6925 5.795441 GCTGTCTGAAACGCCTTATAAAAAG 59.205 40.000 0.00 0.00 0.00 2.27
4809 6926 6.249035 TGTCTGAAACGCCTTATAAAAAGG 57.751 37.500 0.00 0.00 40.39 3.11
4810 6927 5.998981 TGTCTGAAACGCCTTATAAAAAGGA 59.001 36.000 7.97 0.00 39.81 3.36
4811 6928 6.487331 TGTCTGAAACGCCTTATAAAAAGGAA 59.513 34.615 7.97 0.00 39.81 3.36
4812 6929 6.800408 GTCTGAAACGCCTTATAAAAAGGAAC 59.200 38.462 7.97 0.00 39.81 3.62
4813 6930 5.691815 TGAAACGCCTTATAAAAAGGAACG 58.308 37.500 7.97 5.32 39.81 3.95
4814 6931 4.690184 AACGCCTTATAAAAAGGAACGG 57.310 40.909 7.97 0.00 39.81 4.44
4815 6932 3.941573 ACGCCTTATAAAAAGGAACGGA 58.058 40.909 7.97 0.00 39.81 4.69
4816 6933 3.937079 ACGCCTTATAAAAAGGAACGGAG 59.063 43.478 7.97 0.00 39.81 4.63
4817 6934 3.311596 CGCCTTATAAAAAGGAACGGAGG 59.688 47.826 7.97 0.00 39.81 4.30
4818 6935 3.630769 GCCTTATAAAAAGGAACGGAGGG 59.369 47.826 7.97 0.00 39.81 4.30
4819 6936 4.627013 GCCTTATAAAAAGGAACGGAGGGA 60.627 45.833 7.97 0.00 39.81 4.20
4820 6937 5.123936 CCTTATAAAAAGGAACGGAGGGAG 58.876 45.833 0.00 0.00 39.81 4.30
4821 6938 5.338953 CCTTATAAAAAGGAACGGAGGGAGT 60.339 44.000 0.00 0.00 39.81 3.85
4822 6939 6.126968 CCTTATAAAAAGGAACGGAGGGAGTA 60.127 42.308 0.00 0.00 39.81 2.59
4823 6940 3.413846 AAAAAGGAACGGAGGGAGTAC 57.586 47.619 0.00 0.00 0.00 2.73
4833 6950 1.067212 GGAGGGAGTACGTGTAGCATG 59.933 57.143 0.00 0.00 0.00 4.06
4849 6971 4.760530 AGCATGGTAGCAAGTAGAATCA 57.239 40.909 0.00 0.00 36.85 2.57
4892 7014 7.463383 GCAGTATGTCTGTACGAAAATTCAGAG 60.463 40.741 0.00 0.00 45.23 3.35
4898 7020 6.251801 GTCTGTACGAAAATTCAGAGTAGCTC 59.748 42.308 0.00 0.00 37.56 4.09
4899 7021 6.151312 TCTGTACGAAAATTCAGAGTAGCTCT 59.849 38.462 0.00 0.00 42.11 4.09
4940 7062 6.274322 AGCTAATGGGTATTTTATGGTGGA 57.726 37.500 0.00 0.00 0.00 4.02
4954 7076 6.713762 TTATGGTGGATTGAGGCAATTAAG 57.286 37.500 0.00 0.00 33.90 1.85
5032 7154 4.546829 TCATACCACTAGACCAAACACC 57.453 45.455 0.00 0.00 0.00 4.16
5033 7155 3.262405 TCATACCACTAGACCAAACACCC 59.738 47.826 0.00 0.00 0.00 4.61
5034 7156 0.395312 ACCACTAGACCAAACACCCG 59.605 55.000 0.00 0.00 0.00 5.28
5048 7170 1.700739 ACACCCGGATTGGTTTCTACA 59.299 47.619 0.73 0.00 36.12 2.74
5054 7176 4.814771 CCCGGATTGGTTTCTACATTCTAC 59.185 45.833 0.73 0.00 35.15 2.59
5055 7177 5.424757 CCGGATTGGTTTCTACATTCTACA 58.575 41.667 0.00 0.00 0.00 2.74
5056 7178 6.055588 CCGGATTGGTTTCTACATTCTACAT 58.944 40.000 0.00 0.00 0.00 2.29
5057 7179 7.214381 CCGGATTGGTTTCTACATTCTACATA 58.786 38.462 0.00 0.00 0.00 2.29
5079 7201 8.537858 ACATAATTTTATATACTCCCTCCGTCC 58.462 37.037 0.00 0.00 0.00 4.79
5080 7202 6.370186 AATTTTATATACTCCCTCCGTCCC 57.630 41.667 0.00 0.00 0.00 4.46
5081 7203 4.474303 TTTATATACTCCCTCCGTCCCA 57.526 45.455 0.00 0.00 0.00 4.37
5082 7204 4.687262 TTATATACTCCCTCCGTCCCAT 57.313 45.455 0.00 0.00 0.00 4.00
5083 7205 5.801720 TTATATACTCCCTCCGTCCCATA 57.198 43.478 0.00 0.00 0.00 2.74
5084 7206 4.687262 ATATACTCCCTCCGTCCCATAA 57.313 45.455 0.00 0.00 0.00 1.90
5085 7207 3.562108 ATACTCCCTCCGTCCCATAAT 57.438 47.619 0.00 0.00 0.00 1.28
5086 7208 4.687262 ATACTCCCTCCGTCCCATAATA 57.313 45.455 0.00 0.00 0.00 0.98
5087 7209 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
5088 7210 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
5089 7211 5.222278 ACTCCCTCCGTCCCATAATATAT 57.778 43.478 0.00 0.00 0.00 0.86
5090 7212 5.600749 ACTCCCTCCGTCCCATAATATATT 58.399 41.667 2.97 2.97 0.00 1.28
5091 7213 6.748969 ACTCCCTCCGTCCCATAATATATTA 58.251 40.000 7.62 7.62 0.00 0.98
5092 7214 7.371043 ACTCCCTCCGTCCCATAATATATTAT 58.629 38.462 11.51 11.51 33.44 1.28
5093 7215 7.290248 ACTCCCTCCGTCCCATAATATATTATG 59.710 40.741 27.94 27.94 45.70 1.90
5104 7226 7.612065 CATAATATATTATGGGACGGAGGGA 57.388 40.000 27.49 0.00 43.58 4.20
5105 7227 7.671302 CATAATATATTATGGGACGGAGGGAG 58.329 42.308 27.49 6.81 43.58 4.30
5106 7228 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
5107 7229 1.424638 ATTATGGGACGGAGGGAGTG 58.575 55.000 0.00 0.00 0.00 3.51
5112 7234 0.464452 GGGACGGAGGGAGTGTAATG 59.536 60.000 0.00 0.00 0.00 1.90
5148 7271 7.669089 TTATTTCCAAGAAAATACCCATCCC 57.331 36.000 0.00 0.00 32.30 3.85
5149 7272 3.680777 TCCAAGAAAATACCCATCCCC 57.319 47.619 0.00 0.00 0.00 4.81
5150 7273 2.929724 TCCAAGAAAATACCCATCCCCA 59.070 45.455 0.00 0.00 0.00 4.96
5151 7274 3.535590 TCCAAGAAAATACCCATCCCCAT 59.464 43.478 0.00 0.00 0.00 4.00
5152 7275 3.897505 CCAAGAAAATACCCATCCCCATC 59.102 47.826 0.00 0.00 0.00 3.51
5153 7276 4.545678 CAAGAAAATACCCATCCCCATCA 58.454 43.478 0.00 0.00 0.00 3.07
5154 7277 4.184649 AGAAAATACCCATCCCCATCAC 57.815 45.455 0.00 0.00 0.00 3.06
5155 7278 3.117131 AGAAAATACCCATCCCCATCACC 60.117 47.826 0.00 0.00 0.00 4.02
5156 7279 1.919933 AATACCCATCCCCATCACCA 58.080 50.000 0.00 0.00 0.00 4.17
5157 7280 1.449271 ATACCCATCCCCATCACCAG 58.551 55.000 0.00 0.00 0.00 4.00
5158 7281 1.352622 TACCCATCCCCATCACCAGC 61.353 60.000 0.00 0.00 0.00 4.85
5159 7282 2.203252 CCATCCCCATCACCAGCG 60.203 66.667 0.00 0.00 0.00 5.18
5189 7312 7.201911 CCCCCATGACTTAAATATTGAGGAAAC 60.202 40.741 0.00 0.00 0.00 2.78
5246 7369 1.633774 TCTCCTCGAACCTCTTTGCT 58.366 50.000 0.00 0.00 0.00 3.91
5292 7415 9.851686 TGATTCATAGTTGAACATATAAAGCCT 57.148 29.630 0.00 0.00 44.36 4.58
5294 7417 8.677148 TTCATAGTTGAACATATAAAGCCTCC 57.323 34.615 0.00 0.00 36.94 4.30
5295 7418 8.034313 TCATAGTTGAACATATAAAGCCTCCT 57.966 34.615 0.00 0.00 0.00 3.69
5296 7419 9.154632 TCATAGTTGAACATATAAAGCCTCCTA 57.845 33.333 0.00 0.00 0.00 2.94
5297 7420 9.429359 CATAGTTGAACATATAAAGCCTCCTAG 57.571 37.037 0.00 0.00 0.00 3.02
5298 7421 7.676683 AGTTGAACATATAAAGCCTCCTAGA 57.323 36.000 0.00 0.00 0.00 2.43
5299 7422 7.501844 AGTTGAACATATAAAGCCTCCTAGAC 58.498 38.462 0.00 0.00 0.00 2.59
5300 7423 7.345914 AGTTGAACATATAAAGCCTCCTAGACT 59.654 37.037 0.00 0.00 0.00 3.24
5301 7424 7.291411 TGAACATATAAAGCCTCCTAGACTC 57.709 40.000 0.00 0.00 0.00 3.36
5302 7425 6.267928 TGAACATATAAAGCCTCCTAGACTCC 59.732 42.308 0.00 0.00 0.00 3.85
5303 7426 5.971493 ACATATAAAGCCTCCTAGACTCCT 58.029 41.667 0.00 0.00 0.00 3.69
5304 7427 7.104974 ACATATAAAGCCTCCTAGACTCCTA 57.895 40.000 0.00 0.00 0.00 2.94
5305 7428 7.179269 ACATATAAAGCCTCCTAGACTCCTAG 58.821 42.308 0.00 0.00 41.58 3.02
5314 7437 1.950909 CTAGACTCCTAGGCAGAACCG 59.049 57.143 2.96 0.00 46.52 4.44
5315 7438 0.331954 AGACTCCTAGGCAGAACCGA 59.668 55.000 2.96 0.00 46.52 4.69
5316 7439 1.063567 AGACTCCTAGGCAGAACCGAT 60.064 52.381 2.96 0.00 46.52 4.18
5317 7440 1.067821 GACTCCTAGGCAGAACCGATG 59.932 57.143 2.96 0.00 46.52 3.84
5318 7441 0.390860 CTCCTAGGCAGAACCGATGG 59.609 60.000 2.96 0.00 46.52 3.51
5319 7442 1.227674 CCTAGGCAGAACCGATGGC 60.228 63.158 0.00 0.00 46.52 4.40
5322 7445 2.514824 GGCAGAACCGATGGCTCC 60.515 66.667 0.00 0.00 39.94 4.70
5323 7446 2.268920 GCAGAACCGATGGCTCCA 59.731 61.111 0.00 0.00 0.00 3.86
5324 7447 1.817099 GCAGAACCGATGGCTCCAG 60.817 63.158 0.00 0.00 0.00 3.86
5325 7448 1.817099 CAGAACCGATGGCTCCAGC 60.817 63.158 0.00 0.00 41.14 4.85
5364 7487 2.802106 AAAAACCACCGCACCGTG 59.198 55.556 0.00 0.00 0.00 4.94
5365 7488 3.418744 AAAAACCACCGCACCGTGC 62.419 57.895 13.81 13.81 40.69 5.34
5366 7489 4.868116 AAACCACCGCACCGTGCT 62.868 61.111 20.87 0.35 42.25 4.40
5381 7504 3.972276 GCTGCGCGTGGGGAAAAA 61.972 61.111 8.43 0.00 0.00 1.94
5382 7505 2.255252 CTGCGCGTGGGGAAAAAG 59.745 61.111 8.43 0.00 0.00 2.27
5383 7506 2.203224 TGCGCGTGGGGAAAAAGA 60.203 55.556 8.43 0.00 0.00 2.52
5384 7507 2.187599 CTGCGCGTGGGGAAAAAGAG 62.188 60.000 8.43 0.00 0.00 2.85
5385 7508 1.964373 GCGCGTGGGGAAAAAGAGA 60.964 57.895 8.43 0.00 0.00 3.10
5386 7509 1.912371 GCGCGTGGGGAAAAAGAGAG 61.912 60.000 8.43 0.00 0.00 3.20
5387 7510 1.298859 CGCGTGGGGAAAAAGAGAGG 61.299 60.000 0.00 0.00 0.00 3.69
5388 7511 0.960861 GCGTGGGGAAAAAGAGAGGG 60.961 60.000 0.00 0.00 0.00 4.30
5389 7512 0.960861 CGTGGGGAAAAAGAGAGGGC 60.961 60.000 0.00 0.00 0.00 5.19
5390 7513 0.960861 GTGGGGAAAAAGAGAGGGCG 60.961 60.000 0.00 0.00 0.00 6.13
5391 7514 2.046864 GGGGAAAAAGAGAGGGCGC 61.047 63.158 0.00 0.00 0.00 6.53
5392 7515 1.303317 GGGAAAAAGAGAGGGCGCA 60.303 57.895 10.83 0.00 0.00 6.09
5393 7516 1.587043 GGGAAAAAGAGAGGGCGCAC 61.587 60.000 10.83 5.15 0.00 5.34
5394 7517 1.587043 GGAAAAAGAGAGGGCGCACC 61.587 60.000 5.73 6.39 40.67 5.01
5395 7518 1.912371 GAAAAAGAGAGGGCGCACCG 61.912 60.000 5.73 0.00 46.96 4.94
5443 7566 3.475774 CGCGAGGGACGAAAACGG 61.476 66.667 0.00 0.00 45.77 4.44
5445 7568 3.475774 CGAGGGACGAAAACGGCG 61.476 66.667 4.80 4.80 45.77 6.46
5467 8048 0.853530 GAACCCTAGCCCCAATCCAT 59.146 55.000 0.00 0.00 0.00 3.41
5469 8050 2.458286 ACCCTAGCCCCAATCCATAT 57.542 50.000 0.00 0.00 0.00 1.78
5474 8055 1.000896 GCCCCAATCCATATCCCCG 60.001 63.158 0.00 0.00 0.00 5.73
5498 8079 1.454847 CTCACTCCTCCCTCCCTCG 60.455 68.421 0.00 0.00 0.00 4.63
5528 8118 2.041405 CCCTCCCACCTCCTCCTC 60.041 72.222 0.00 0.00 0.00 3.71
5575 8165 1.455217 GCTACTCCTCCACCGCCTA 60.455 63.158 0.00 0.00 0.00 3.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
146 149 3.913763 CACACATTGATGTTTAGTTGGCG 59.086 43.478 0.00 0.00 39.39 5.69
223 226 3.814842 CACACTGATGTTTAGTTGGCAGA 59.185 43.478 0.00 0.00 36.72 4.26
294 298 5.827797 TGATGTTTAGTTGGCAGAAAGACTT 59.172 36.000 0.00 0.00 0.00 3.01
438 442 1.865865 ACGAAAGTCGATGTGCAACT 58.134 45.000 4.40 0.00 44.19 3.16
963 968 1.373497 CACTCTCGCCACTGTCCAC 60.373 63.158 0.00 0.00 0.00 4.02
964 969 3.051210 CACTCTCGCCACTGTCCA 58.949 61.111 0.00 0.00 0.00 4.02
965 970 2.433318 GCACTCTCGCCACTGTCC 60.433 66.667 0.00 0.00 0.00 4.02
966 971 0.880278 TTTGCACTCTCGCCACTGTC 60.880 55.000 0.00 0.00 0.00 3.51
1023 1036 1.734655 GGAATGGATAGGGAGAGGCA 58.265 55.000 0.00 0.00 0.00 4.75
1082 1095 0.894141 GTGAGCAGGAGAGAGCTTGA 59.106 55.000 0.00 0.00 42.04 3.02
1098 1111 0.333312 GGGAGAGTGAGAGGGAGTGA 59.667 60.000 0.00 0.00 0.00 3.41
1110 1123 1.079438 GGTGGTGAGGAGGGAGAGT 59.921 63.158 0.00 0.00 0.00 3.24
1236 1249 2.031516 GTCGTCTCCGTCGAGGTCA 61.032 63.158 4.18 0.00 41.99 4.02
1363 1376 3.532155 CTCCCCTTCCTCGCCTCG 61.532 72.222 0.00 0.00 0.00 4.63
1404 1417 0.315251 CAGTGGACACGAAGCTCTCA 59.685 55.000 0.00 0.00 36.20 3.27
1494 1507 1.402852 CGGATGAAGAAGTCGCAGTGA 60.403 52.381 0.00 0.00 0.00 3.41
1562 1575 7.682787 AGTTGATGAGGTGAATTACTAGGAT 57.317 36.000 0.00 0.00 0.00 3.24
1563 1576 7.618117 TGTAGTTGATGAGGTGAATTACTAGGA 59.382 37.037 0.00 0.00 0.00 2.94
1568 1581 9.774742 GAAAATGTAGTTGATGAGGTGAATTAC 57.225 33.333 0.00 0.00 0.00 1.89
1575 1588 5.880901 ACTGGAAAATGTAGTTGATGAGGT 58.119 37.500 0.00 0.00 0.00 3.85
1579 1592 9.573133 GGAAATTACTGGAAAATGTAGTTGATG 57.427 33.333 0.00 0.00 0.00 3.07
1583 1596 7.451566 AGCAGGAAATTACTGGAAAATGTAGTT 59.548 33.333 7.40 0.00 36.48 2.24
1686 1702 3.490800 TTGCCATCGATTGACATGTTG 57.509 42.857 0.00 0.00 0.00 3.33
1701 1717 3.199727 TGTCAGCTGTCCTAATATTGCCA 59.800 43.478 14.67 0.00 0.00 4.92
1718 1734 3.118592 GGATTGGAGGGAGTAGTTGTCAG 60.119 52.174 0.00 0.00 0.00 3.51
1720 1736 2.838202 TGGATTGGAGGGAGTAGTTGTC 59.162 50.000 0.00 0.00 0.00 3.18
1732 1748 6.348786 CCAGCGACAATTAATATGGATTGGAG 60.349 42.308 13.06 8.78 37.53 3.86
1733 1749 5.473162 CCAGCGACAATTAATATGGATTGGA 59.527 40.000 13.06 0.00 37.53 3.53
1736 1752 6.959639 AACCAGCGACAATTAATATGGATT 57.040 33.333 0.00 0.00 0.00 3.01
1737 1753 6.959639 AAACCAGCGACAATTAATATGGAT 57.040 33.333 0.00 0.00 0.00 3.41
1741 1757 8.951787 TGTACTAAACCAGCGACAATTAATAT 57.048 30.769 0.00 0.00 0.00 1.28
1742 1758 8.658609 GTTGTACTAAACCAGCGACAATTAATA 58.341 33.333 0.00 0.00 36.39 0.98
1780 1796 6.293955 CCTTCCATCGATATTAATTGCCGTTT 60.294 38.462 0.00 0.00 0.00 3.60
1782 1798 4.695455 CCTTCCATCGATATTAATTGCCGT 59.305 41.667 0.00 0.00 0.00 5.68
1785 1801 5.940470 ACTCCCTTCCATCGATATTAATTGC 59.060 40.000 0.00 0.00 0.00 3.56
1802 1818 9.269494 AGTTAGCTTAAAGATTACTACTCCCTT 57.731 33.333 0.00 0.00 0.00 3.95
1814 1830 4.455877 GCACCACACAGTTAGCTTAAAGAT 59.544 41.667 0.00 0.00 0.00 2.40
1819 1835 3.138304 CAAGCACCACACAGTTAGCTTA 58.862 45.455 0.00 0.00 40.01 3.09
1840 1856 4.142315 ACACAATGCCATATTGAGCAGAAC 60.142 41.667 6.63 0.00 43.38 3.01
2135 2151 2.999355 GCAGAGTAGGCAAAGTTCTCAG 59.001 50.000 0.00 0.00 0.00 3.35
2143 2159 4.351874 ACAAACTAGCAGAGTAGGCAAA 57.648 40.909 0.00 0.00 37.44 3.68
2362 2378 2.505819 CCCAGTTTCCCACATACTAGCT 59.494 50.000 0.00 0.00 0.00 3.32
2372 2391 1.152777 CAGCACACCCAGTTTCCCA 60.153 57.895 0.00 0.00 0.00 4.37
2433 2452 4.256110 TGTCTCACCAAGCAACTATGATG 58.744 43.478 0.00 0.00 0.00 3.07
2823 4765 4.752146 TGCATCATCAACAACAACAACAA 58.248 34.783 0.00 0.00 0.00 2.83
2824 4766 4.382345 TGCATCATCAACAACAACAACA 57.618 36.364 0.00 0.00 0.00 3.33
2825 4767 6.254157 GGATATGCATCATCAACAACAACAAC 59.746 38.462 0.19 0.00 32.32 3.32
2865 4807 4.212214 CAGGAGTTTCACTGCTAACTTCAC 59.788 45.833 0.00 0.00 45.47 3.18
3032 4974 0.107703 TAGCCGTGCAGCTTAAGCAT 60.108 50.000 28.39 11.48 44.79 3.79
3064 5006 6.398918 TCAAGTTAAAGCTTGGCTAGTAGAG 58.601 40.000 0.00 0.00 44.26 2.43
3160 5103 3.307242 CAGAACTGCTCGCCTATAAACAC 59.693 47.826 0.00 0.00 0.00 3.32
3211 5154 1.838396 CAGTGGGGCTGCCCTTTTT 60.838 57.895 34.99 16.77 44.66 1.94
3212 5155 2.203684 CAGTGGGGCTGCCCTTTT 60.204 61.111 34.99 18.52 44.66 2.27
3220 5163 2.262774 GAGCTACATGCAGTGGGGCT 62.263 60.000 13.29 13.29 45.94 5.19
3221 5164 1.821332 GAGCTACATGCAGTGGGGC 60.821 63.158 0.00 0.67 45.94 5.80
3222 5165 1.153086 GGAGCTACATGCAGTGGGG 60.153 63.158 0.00 0.00 45.94 4.96
3223 5166 1.153086 GGGAGCTACATGCAGTGGG 60.153 63.158 0.00 0.00 45.94 4.61
3224 5167 1.522355 CGGGAGCTACATGCAGTGG 60.522 63.158 0.00 0.00 45.94 4.00
3225 5168 4.115279 CGGGAGCTACATGCAGTG 57.885 61.111 0.00 0.00 45.94 3.66
3246 5189 4.785453 CTTCCCCAGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
3247 5190 4.101448 CCTTCCCCAGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
3248 5191 3.732849 CCCTTCCCCAGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
3249 5192 2.204151 ACCCTTCCCCAGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
3250 5193 2.125225 GACCCTTCCCCAGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
3251 5194 3.015753 GGACCCTTCCCCAGACCC 61.016 72.222 0.00 0.00 35.57 4.46
3252 5195 3.400054 CGGACCCTTCCCCAGACC 61.400 72.222 0.00 0.00 38.99 3.85
3253 5196 2.284405 TCGGACCCTTCCCCAGAC 60.284 66.667 0.00 0.00 38.99 3.51
3254 5197 2.284405 GTCGGACCCTTCCCCAGA 60.284 66.667 0.00 0.00 38.99 3.86
3255 5198 3.400054 GGTCGGACCCTTCCCCAG 61.400 72.222 16.55 0.00 38.99 4.45
3256 5199 4.257810 TGGTCGGACCCTTCCCCA 62.258 66.667 23.81 0.69 38.99 4.96
3257 5200 3.714001 GTGGTCGGACCCTTCCCC 61.714 72.222 23.81 0.00 38.99 4.81
3258 5201 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
3259 5202 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
3260 5203 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
3261 5204 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
3262 5205 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
3263 5206 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
3264 5207 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
3265 5208 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
3270 5213 4.103469 TGTGTACAATAGACCCAAAGTGGT 59.897 41.667 0.00 0.00 42.79 4.16
3271 5214 4.647611 TGTGTACAATAGACCCAAAGTGG 58.352 43.478 0.00 0.00 37.25 4.00
3272 5215 4.154195 GCTGTGTACAATAGACCCAAAGTG 59.846 45.833 11.47 0.00 0.00 3.16
3273 5216 4.324267 GCTGTGTACAATAGACCCAAAGT 58.676 43.478 11.47 0.00 0.00 2.66
3274 5217 3.689649 GGCTGTGTACAATAGACCCAAAG 59.310 47.826 11.47 0.00 0.00 2.77
3275 5218 3.329520 AGGCTGTGTACAATAGACCCAAA 59.670 43.478 9.92 0.00 0.00 3.28
3276 5219 2.910319 AGGCTGTGTACAATAGACCCAA 59.090 45.455 9.92 0.00 0.00 4.12
3277 5220 2.546899 AGGCTGTGTACAATAGACCCA 58.453 47.619 9.92 0.00 0.00 4.51
3278 5221 3.629142 AAGGCTGTGTACAATAGACCC 57.371 47.619 9.92 4.45 0.00 4.46
3279 5222 3.939592 GGAAAGGCTGTGTACAATAGACC 59.060 47.826 9.92 10.50 0.00 3.85
3280 5223 3.939592 GGGAAAGGCTGTGTACAATAGAC 59.060 47.826 11.47 8.92 0.00 2.59
3281 5224 3.844211 AGGGAAAGGCTGTGTACAATAGA 59.156 43.478 11.47 0.00 0.00 1.98
3282 5225 4.222124 AGGGAAAGGCTGTGTACAATAG 57.778 45.455 0.00 0.04 0.00 1.73
3283 5226 4.532916 TGTAGGGAAAGGCTGTGTACAATA 59.467 41.667 0.00 0.00 0.00 1.90
3284 5227 3.329520 TGTAGGGAAAGGCTGTGTACAAT 59.670 43.478 0.00 0.00 0.00 2.71
3285 5228 2.706723 TGTAGGGAAAGGCTGTGTACAA 59.293 45.455 0.00 0.00 0.00 2.41
3286 5229 2.331166 TGTAGGGAAAGGCTGTGTACA 58.669 47.619 0.00 0.00 0.00 2.90
3287 5230 3.629142 ATGTAGGGAAAGGCTGTGTAC 57.371 47.619 0.00 0.00 0.00 2.90
3288 5231 4.288626 AGAAATGTAGGGAAAGGCTGTGTA 59.711 41.667 0.00 0.00 0.00 2.90
3289 5232 3.074538 AGAAATGTAGGGAAAGGCTGTGT 59.925 43.478 0.00 0.00 0.00 3.72
3290 5233 3.441572 CAGAAATGTAGGGAAAGGCTGTG 59.558 47.826 0.00 0.00 0.00 3.66
3291 5234 3.074538 ACAGAAATGTAGGGAAAGGCTGT 59.925 43.478 0.00 0.00 0.00 4.40
3292 5235 3.690460 ACAGAAATGTAGGGAAAGGCTG 58.310 45.455 0.00 0.00 0.00 4.85
3293 5236 5.250774 TCTTACAGAAATGTAGGGAAAGGCT 59.749 40.000 0.00 0.00 0.00 4.58
3294 5237 5.497474 TCTTACAGAAATGTAGGGAAAGGC 58.503 41.667 0.00 0.00 0.00 4.35
3295 5238 6.116126 CCTCTTACAGAAATGTAGGGAAAGG 58.884 44.000 0.00 0.00 0.00 3.11
3296 5239 5.586643 GCCTCTTACAGAAATGTAGGGAAAG 59.413 44.000 0.00 0.00 0.00 2.62
3297 5240 5.250774 AGCCTCTTACAGAAATGTAGGGAAA 59.749 40.000 0.00 0.00 0.00 3.13
3298 5241 4.783227 AGCCTCTTACAGAAATGTAGGGAA 59.217 41.667 0.00 0.00 0.00 3.97
3299 5242 4.162320 CAGCCTCTTACAGAAATGTAGGGA 59.838 45.833 0.00 0.00 0.00 4.20
3300 5243 4.080863 ACAGCCTCTTACAGAAATGTAGGG 60.081 45.833 0.00 0.66 0.00 3.53
3301 5244 5.091261 ACAGCCTCTTACAGAAATGTAGG 57.909 43.478 0.00 0.00 0.00 3.18
3302 5245 6.092807 GGAAACAGCCTCTTACAGAAATGTAG 59.907 42.308 0.00 0.00 0.00 2.74
3303 5246 5.938125 GGAAACAGCCTCTTACAGAAATGTA 59.062 40.000 0.00 0.00 0.00 2.29
3304 5247 4.762251 GGAAACAGCCTCTTACAGAAATGT 59.238 41.667 0.00 0.00 0.00 2.71
3305 5248 4.761739 TGGAAACAGCCTCTTACAGAAATG 59.238 41.667 0.00 0.00 35.01 2.32
3306 5249 4.985538 TGGAAACAGCCTCTTACAGAAAT 58.014 39.130 0.00 0.00 35.01 2.17
3307 5250 4.431416 TGGAAACAGCCTCTTACAGAAA 57.569 40.909 0.00 0.00 35.01 2.52
3321 5264 1.476110 CGGGTTCAAGTCCTGGAAACA 60.476 52.381 0.00 0.00 32.36 2.83
3322 5265 1.235724 CGGGTTCAAGTCCTGGAAAC 58.764 55.000 0.00 0.00 0.00 2.78
3323 5266 0.841289 ACGGGTTCAAGTCCTGGAAA 59.159 50.000 0.00 0.00 35.79 3.13
3324 5267 0.107831 CACGGGTTCAAGTCCTGGAA 59.892 55.000 0.00 0.00 35.79 3.53
3325 5268 0.761323 TCACGGGTTCAAGTCCTGGA 60.761 55.000 0.00 0.00 35.79 3.86
3326 5269 0.602905 GTCACGGGTTCAAGTCCTGG 60.603 60.000 0.00 0.00 35.79 4.45
3327 5270 0.602905 GGTCACGGGTTCAAGTCCTG 60.603 60.000 0.00 0.00 37.36 3.86
3328 5271 0.763223 AGGTCACGGGTTCAAGTCCT 60.763 55.000 0.00 0.00 0.00 3.85
3329 5272 0.320508 GAGGTCACGGGTTCAAGTCC 60.321 60.000 0.00 0.00 0.00 3.85
3330 5273 0.391597 TGAGGTCACGGGTTCAAGTC 59.608 55.000 0.00 0.00 0.00 3.01
3331 5274 1.056660 ATGAGGTCACGGGTTCAAGT 58.943 50.000 0.00 0.00 0.00 3.16
3332 5275 1.442769 CATGAGGTCACGGGTTCAAG 58.557 55.000 0.00 0.00 0.00 3.02
3333 5276 0.036164 CCATGAGGTCACGGGTTCAA 59.964 55.000 0.00 0.00 0.00 2.69
3334 5277 1.676968 CCATGAGGTCACGGGTTCA 59.323 57.895 0.00 0.00 0.00 3.18
3335 5278 4.617875 CCATGAGGTCACGGGTTC 57.382 61.111 0.00 0.00 0.00 3.62
3345 5288 1.310933 GCTGCCTTGTGACCATGAGG 61.311 60.000 0.00 0.00 42.21 3.86
3346 5289 0.607217 TGCTGCCTTGTGACCATGAG 60.607 55.000 0.00 0.00 0.00 2.90
3347 5290 0.607217 CTGCTGCCTTGTGACCATGA 60.607 55.000 0.00 0.00 0.00 3.07
3348 5291 1.880894 CTGCTGCCTTGTGACCATG 59.119 57.895 0.00 0.00 0.00 3.66
3349 5292 1.975407 GCTGCTGCCTTGTGACCAT 60.975 57.895 3.85 0.00 0.00 3.55
3350 5293 2.595463 GCTGCTGCCTTGTGACCA 60.595 61.111 3.85 0.00 0.00 4.02
3351 5294 1.458639 AAAGCTGCTGCCTTGTGACC 61.459 55.000 12.44 0.00 40.80 4.02
3352 5295 1.068954 GTAAAGCTGCTGCCTTGTGAC 60.069 52.381 12.44 0.00 40.80 3.67
3353 5296 1.238439 GTAAAGCTGCTGCCTTGTGA 58.762 50.000 12.44 0.00 40.80 3.58
3354 5297 0.242017 GGTAAAGCTGCTGCCTTGTG 59.758 55.000 12.44 0.00 40.80 3.33
3355 5298 0.178992 TGGTAAAGCTGCTGCCTTGT 60.179 50.000 12.44 0.00 40.80 3.16
3356 5299 0.242017 GTGGTAAAGCTGCTGCCTTG 59.758 55.000 12.44 0.00 40.80 3.61
3357 5300 0.178992 TGTGGTAAAGCTGCTGCCTT 60.179 50.000 12.44 8.34 40.80 4.35
3358 5301 0.038744 ATGTGGTAAAGCTGCTGCCT 59.961 50.000 12.44 2.45 40.80 4.75
3359 5302 0.171903 CATGTGGTAAAGCTGCTGCC 59.828 55.000 12.44 7.07 40.80 4.85
3360 5303 0.457337 GCATGTGGTAAAGCTGCTGC 60.457 55.000 1.35 7.62 40.05 5.25
3361 5304 1.171308 AGCATGTGGTAAAGCTGCTG 58.829 50.000 1.35 0.00 41.38 4.41
3362 5305 2.636830 CTAGCATGTGGTAAAGCTGCT 58.363 47.619 0.00 0.00 44.75 4.24
3363 5306 1.064654 GCTAGCATGTGGTAAAGCTGC 59.935 52.381 10.63 0.00 37.94 5.25
3364 5307 2.636830 AGCTAGCATGTGGTAAAGCTG 58.363 47.619 18.83 0.00 36.47 4.24
3365 5308 3.356529 AAGCTAGCATGTGGTAAAGCT 57.643 42.857 18.83 4.19 38.62 3.74
3366 5309 5.066505 ACAATAAGCTAGCATGTGGTAAAGC 59.933 40.000 18.83 0.02 0.00 3.51
3367 5310 6.683974 ACAATAAGCTAGCATGTGGTAAAG 57.316 37.500 18.83 0.00 0.00 1.85
3368 5311 8.568676 TTAACAATAAGCTAGCATGTGGTAAA 57.431 30.769 18.83 0.00 0.00 2.01
3369 5312 8.746052 ATTAACAATAAGCTAGCATGTGGTAA 57.254 30.769 18.83 16.97 0.00 2.85
3370 5313 9.268268 GTATTAACAATAAGCTAGCATGTGGTA 57.732 33.333 18.83 9.24 0.00 3.25
3371 5314 7.993183 AGTATTAACAATAAGCTAGCATGTGGT 59.007 33.333 18.83 3.89 0.00 4.16
3372 5315 8.383318 AGTATTAACAATAAGCTAGCATGTGG 57.617 34.615 18.83 3.14 0.00 4.17
3604 5548 4.595762 TTGTCTTACCACTACTTTCGCT 57.404 40.909 0.00 0.00 0.00 4.93
3607 5551 9.827411 GATTTCAATTGTCTTACCACTACTTTC 57.173 33.333 5.13 0.00 0.00 2.62
3870 5814 5.653330 TGCACCATTTGACATTGATACATCT 59.347 36.000 0.00 0.00 0.00 2.90
3909 5853 7.283354 TGACATTGTGTGACAAATAACAGGTAA 59.717 33.333 0.00 0.00 41.96 2.85
3949 5893 3.843619 TGAGACTCCACAAATATGGACCA 59.156 43.478 0.00 0.00 44.14 4.02
3987 5931 7.819900 ACACTTGACCTGTAGTAAATTCAGATC 59.180 37.037 0.00 0.00 0.00 2.75
4005 5949 7.992180 AATTTTGATTGTGAAGACACTTGAC 57.008 32.000 0.00 0.00 46.07 3.18
4244 6198 9.547753 GACAGTACACCAAAATATATGATGTCT 57.452 33.333 0.00 0.00 0.00 3.41
4247 6201 9.330063 ACAGACAGTACACCAAAATATATGATG 57.670 33.333 0.00 0.00 0.00 3.07
4248 6202 9.330063 CACAGACAGTACACCAAAATATATGAT 57.670 33.333 0.00 0.00 0.00 2.45
4250 6204 7.552687 ACCACAGACAGTACACCAAAATATATG 59.447 37.037 0.00 0.00 0.00 1.78
4251 6205 7.552687 CACCACAGACAGTACACCAAAATATAT 59.447 37.037 0.00 0.00 0.00 0.86
4253 6207 5.705441 CACCACAGACAGTACACCAAAATAT 59.295 40.000 0.00 0.00 0.00 1.28
4273 6262 4.524053 AGACGACTACATATCAGTCACCA 58.476 43.478 12.36 0.00 42.12 4.17
4325 6425 4.588528 GCAGGTCATTTCTCCTATCTCTCT 59.411 45.833 0.00 0.00 32.26 3.10
4362 6462 3.051617 TCTGAAAGACTCGCCTCCA 57.948 52.632 0.00 0.00 38.67 3.86
4395 6495 8.515414 AGAGAATAATTGTGAAGCAAGTAAACC 58.485 33.333 0.00 0.00 40.39 3.27
4471 6574 2.668280 GGTGGCGTCGTCTCTTTGC 61.668 63.158 0.00 0.00 0.00 3.68
4611 6714 0.675837 GCTGCACATCCTTCTCTGCA 60.676 55.000 0.00 0.00 37.30 4.41
4612 6715 1.703438 CGCTGCACATCCTTCTCTGC 61.703 60.000 0.00 0.00 0.00 4.26
4613 6716 0.108472 TCGCTGCACATCCTTCTCTG 60.108 55.000 0.00 0.00 0.00 3.35
4614 6717 0.829333 ATCGCTGCACATCCTTCTCT 59.171 50.000 0.00 0.00 0.00 3.10
4615 6718 1.661341 AATCGCTGCACATCCTTCTC 58.339 50.000 0.00 0.00 0.00 2.87
4616 6719 2.119801 AAATCGCTGCACATCCTTCT 57.880 45.000 0.00 0.00 0.00 2.85
4617 6720 2.095059 ACAAAATCGCTGCACATCCTTC 60.095 45.455 0.00 0.00 0.00 3.46
4618 6721 1.888512 ACAAAATCGCTGCACATCCTT 59.111 42.857 0.00 0.00 0.00 3.36
4619 6722 1.538047 ACAAAATCGCTGCACATCCT 58.462 45.000 0.00 0.00 0.00 3.24
4620 6723 1.987770 CAACAAAATCGCTGCACATCC 59.012 47.619 0.00 0.00 0.00 3.51
4621 6724 2.664916 ACAACAAAATCGCTGCACATC 58.335 42.857 0.00 0.00 0.00 3.06
4622 6725 2.798976 ACAACAAAATCGCTGCACAT 57.201 40.000 0.00 0.00 0.00 3.21
4623 6726 2.575694 AACAACAAAATCGCTGCACA 57.424 40.000 0.00 0.00 0.00 4.57
4624 6727 3.115554 AGAAACAACAAAATCGCTGCAC 58.884 40.909 0.00 0.00 0.00 4.57
4705 6822 9.315363 AGTGAAAAGAGGGAGTACCATATATAG 57.685 37.037 0.00 0.00 43.89 1.31
4718 6835 8.302515 ACGTCTTATATAAGTGAAAAGAGGGA 57.697 34.615 19.58 0.00 36.74 4.20
4719 6836 8.943909 AACGTCTTATATAAGTGAAAAGAGGG 57.056 34.615 19.58 1.84 36.74 4.30
4736 6853 9.754382 ACTGTCTGAATTTACTAAAACGTCTTA 57.246 29.630 0.00 0.00 0.00 2.10
4737 6854 8.548721 CACTGTCTGAATTTACTAAAACGTCTT 58.451 33.333 0.00 0.00 0.00 3.01
4738 6855 7.709613 ACACTGTCTGAATTTACTAAAACGTCT 59.290 33.333 0.00 0.00 0.00 4.18
4739 6856 7.848491 ACACTGTCTGAATTTACTAAAACGTC 58.152 34.615 0.00 0.00 0.00 4.34
4740 6857 7.781548 ACACTGTCTGAATTTACTAAAACGT 57.218 32.000 0.00 0.00 0.00 3.99
4741 6858 8.975439 AGTACACTGTCTGAATTTACTAAAACG 58.025 33.333 0.00 0.00 0.00 3.60
4747 6864 9.477484 CTGTTTAGTACACTGTCTGAATTTACT 57.523 33.333 0.00 0.00 32.10 2.24
4748 6865 9.257651 ACTGTTTAGTACACTGTCTGAATTTAC 57.742 33.333 0.00 0.00 34.74 2.01
4749 6866 9.826574 AACTGTTTAGTACACTGTCTGAATTTA 57.173 29.630 0.00 0.00 35.69 1.40
4750 6867 8.732746 AACTGTTTAGTACACTGTCTGAATTT 57.267 30.769 0.00 0.00 35.69 1.82
4751 6868 7.985184 TGAACTGTTTAGTACACTGTCTGAATT 59.015 33.333 0.00 0.00 35.69 2.17
4752 6869 7.497595 TGAACTGTTTAGTACACTGTCTGAAT 58.502 34.615 0.00 0.00 35.69 2.57
4753 6870 6.869695 TGAACTGTTTAGTACACTGTCTGAA 58.130 36.000 0.00 0.00 35.69 3.02
4754 6871 6.459670 TGAACTGTTTAGTACACTGTCTGA 57.540 37.500 0.00 0.00 35.69 3.27
4755 6872 7.277981 AGTTTGAACTGTTTAGTACACTGTCTG 59.722 37.037 0.00 0.00 37.98 3.51
4756 6873 7.328737 AGTTTGAACTGTTTAGTACACTGTCT 58.671 34.615 0.00 0.00 37.98 3.41
4757 6874 7.277098 TGAGTTTGAACTGTTTAGTACACTGTC 59.723 37.037 0.30 0.00 39.88 3.51
4758 6875 7.101054 TGAGTTTGAACTGTTTAGTACACTGT 58.899 34.615 0.30 0.00 39.88 3.55
4759 6876 7.534085 TGAGTTTGAACTGTTTAGTACACTG 57.466 36.000 0.30 0.00 39.88 3.66
4760 6877 6.258068 GCTGAGTTTGAACTGTTTAGTACACT 59.742 38.462 0.30 0.00 39.88 3.55
4761 6878 6.258068 AGCTGAGTTTGAACTGTTTAGTACAC 59.742 38.462 0.30 0.00 39.88 2.90
4762 6879 6.257849 CAGCTGAGTTTGAACTGTTTAGTACA 59.742 38.462 8.42 0.00 39.88 2.90
4763 6880 6.258068 ACAGCTGAGTTTGAACTGTTTAGTAC 59.742 38.462 23.35 0.00 38.38 2.73
4764 6881 6.346096 ACAGCTGAGTTTGAACTGTTTAGTA 58.654 36.000 23.35 0.00 38.38 1.82
4765 6882 5.186198 ACAGCTGAGTTTGAACTGTTTAGT 58.814 37.500 23.35 0.00 38.38 2.24
4766 6883 5.525378 AGACAGCTGAGTTTGAACTGTTTAG 59.475 40.000 23.35 0.00 41.45 1.85
4767 6884 5.294306 CAGACAGCTGAGTTTGAACTGTTTA 59.706 40.000 23.35 0.00 45.17 2.01
4768 6885 4.095483 CAGACAGCTGAGTTTGAACTGTTT 59.905 41.667 23.35 0.00 45.17 2.83
4769 6886 3.624861 CAGACAGCTGAGTTTGAACTGTT 59.375 43.478 23.35 0.00 45.17 3.16
4770 6887 3.118629 TCAGACAGCTGAGTTTGAACTGT 60.119 43.478 23.35 0.00 45.88 3.55
4771 6888 3.461061 TCAGACAGCTGAGTTTGAACTG 58.539 45.455 23.35 14.46 45.88 3.16
4772 6889 3.827008 TCAGACAGCTGAGTTTGAACT 57.173 42.857 23.35 0.00 45.88 3.01
4782 6899 1.795768 TAAGGCGTTTCAGACAGCTG 58.204 50.000 13.48 13.48 43.67 4.24
4783 6900 2.770164 ATAAGGCGTTTCAGACAGCT 57.230 45.000 0.00 0.00 0.00 4.24
4784 6901 4.939509 TTTATAAGGCGTTTCAGACAGC 57.060 40.909 0.00 0.00 0.00 4.40
4785 6902 6.148811 TCCTTTTTATAAGGCGTTTCAGACAG 59.851 38.462 0.00 0.00 37.34 3.51
4786 6903 5.998981 TCCTTTTTATAAGGCGTTTCAGACA 59.001 36.000 0.00 0.00 37.34 3.41
4787 6904 6.490566 TCCTTTTTATAAGGCGTTTCAGAC 57.509 37.500 0.00 0.00 37.34 3.51
4788 6905 6.347888 CGTTCCTTTTTATAAGGCGTTTCAGA 60.348 38.462 0.00 0.00 37.34 3.27
4789 6906 5.793457 CGTTCCTTTTTATAAGGCGTTTCAG 59.207 40.000 0.00 0.00 37.34 3.02
4790 6907 5.335035 CCGTTCCTTTTTATAAGGCGTTTCA 60.335 40.000 0.00 0.00 37.34 2.69
4791 6908 5.090757 CCGTTCCTTTTTATAAGGCGTTTC 58.909 41.667 0.00 0.00 37.34 2.78
4792 6909 4.761227 TCCGTTCCTTTTTATAAGGCGTTT 59.239 37.500 0.00 0.00 37.34 3.60
4793 6910 4.325972 TCCGTTCCTTTTTATAAGGCGTT 58.674 39.130 0.00 0.00 37.34 4.84
4794 6911 3.937079 CTCCGTTCCTTTTTATAAGGCGT 59.063 43.478 0.00 0.00 37.34 5.68
4795 6912 3.311596 CCTCCGTTCCTTTTTATAAGGCG 59.688 47.826 0.00 0.00 37.34 5.52
4796 6913 3.630769 CCCTCCGTTCCTTTTTATAAGGC 59.369 47.826 0.00 0.00 37.34 4.35
4797 6914 5.106876 TCCCTCCGTTCCTTTTTATAAGG 57.893 43.478 0.00 0.00 38.78 2.69
4798 6915 5.742063 ACTCCCTCCGTTCCTTTTTATAAG 58.258 41.667 0.00 0.00 0.00 1.73
4799 6916 5.767277 ACTCCCTCCGTTCCTTTTTATAA 57.233 39.130 0.00 0.00 0.00 0.98
4800 6917 5.163519 CGTACTCCCTCCGTTCCTTTTTATA 60.164 44.000 0.00 0.00 0.00 0.98
4801 6918 4.382362 CGTACTCCCTCCGTTCCTTTTTAT 60.382 45.833 0.00 0.00 0.00 1.40
4802 6919 3.056607 CGTACTCCCTCCGTTCCTTTTTA 60.057 47.826 0.00 0.00 0.00 1.52
4803 6920 2.289257 CGTACTCCCTCCGTTCCTTTTT 60.289 50.000 0.00 0.00 0.00 1.94
4804 6921 1.274447 CGTACTCCCTCCGTTCCTTTT 59.726 52.381 0.00 0.00 0.00 2.27
4805 6922 0.893447 CGTACTCCCTCCGTTCCTTT 59.107 55.000 0.00 0.00 0.00 3.11
4806 6923 0.251519 ACGTACTCCCTCCGTTCCTT 60.252 55.000 0.00 0.00 0.00 3.36
4807 6924 0.964358 CACGTACTCCCTCCGTTCCT 60.964 60.000 0.00 0.00 31.46 3.36
4808 6925 1.246737 ACACGTACTCCCTCCGTTCC 61.247 60.000 0.00 0.00 31.46 3.62
4809 6926 1.399791 CTACACGTACTCCCTCCGTTC 59.600 57.143 0.00 0.00 31.46 3.95
4810 6927 1.457346 CTACACGTACTCCCTCCGTT 58.543 55.000 0.00 0.00 31.46 4.44
4811 6928 1.028868 GCTACACGTACTCCCTCCGT 61.029 60.000 0.00 0.00 34.71 4.69
4812 6929 1.028330 TGCTACACGTACTCCCTCCG 61.028 60.000 0.00 0.00 0.00 4.63
4813 6930 1.067212 CATGCTACACGTACTCCCTCC 59.933 57.143 0.00 0.00 0.00 4.30
4814 6931 1.067212 CCATGCTACACGTACTCCCTC 59.933 57.143 0.00 0.00 0.00 4.30
4815 6932 1.112113 CCATGCTACACGTACTCCCT 58.888 55.000 0.00 0.00 0.00 4.20
4816 6933 0.822164 ACCATGCTACACGTACTCCC 59.178 55.000 0.00 0.00 0.00 4.30
4817 6934 2.543238 GCTACCATGCTACACGTACTCC 60.543 54.545 0.00 0.00 0.00 3.85
4818 6935 2.098607 TGCTACCATGCTACACGTACTC 59.901 50.000 0.00 0.00 0.00 2.59
4819 6936 2.097036 TGCTACCATGCTACACGTACT 58.903 47.619 0.00 0.00 0.00 2.73
4820 6937 2.572191 TGCTACCATGCTACACGTAC 57.428 50.000 0.00 0.00 0.00 3.67
4821 6938 2.494471 ACTTGCTACCATGCTACACGTA 59.506 45.455 0.00 0.00 0.00 3.57
4822 6939 1.275291 ACTTGCTACCATGCTACACGT 59.725 47.619 0.00 0.00 0.00 4.49
4823 6940 2.010145 ACTTGCTACCATGCTACACG 57.990 50.000 0.00 0.00 0.00 4.49
4833 6950 7.095439 GCATACATCTTGATTCTACTTGCTACC 60.095 40.741 0.00 0.00 0.00 3.18
4849 6971 6.544931 ACATACTGCTCAAATGCATACATCTT 59.455 34.615 0.00 0.00 42.48 2.40
4892 7014 6.561945 CTCTGAATTTTCGTACAGAGCTAC 57.438 41.667 0.00 0.00 45.77 3.58
4898 7020 8.535592 CATTAGCTACTCTGAATTTTCGTACAG 58.464 37.037 0.00 0.00 0.00 2.74
4899 7021 7.491372 CCATTAGCTACTCTGAATTTTCGTACA 59.509 37.037 0.00 0.00 0.00 2.90
4900 7022 7.042658 CCCATTAGCTACTCTGAATTTTCGTAC 60.043 40.741 0.00 0.00 0.00 3.67
4901 7023 6.984474 CCCATTAGCTACTCTGAATTTTCGTA 59.016 38.462 0.00 0.00 0.00 3.43
4902 7024 5.817816 CCCATTAGCTACTCTGAATTTTCGT 59.182 40.000 0.00 0.00 0.00 3.85
4903 7025 5.817816 ACCCATTAGCTACTCTGAATTTTCG 59.182 40.000 0.00 0.00 0.00 3.46
4904 7026 8.910351 ATACCCATTAGCTACTCTGAATTTTC 57.090 34.615 0.00 0.00 0.00 2.29
4905 7027 9.700831 AAATACCCATTAGCTACTCTGAATTTT 57.299 29.630 0.00 0.00 0.00 1.82
4906 7028 9.700831 AAAATACCCATTAGCTACTCTGAATTT 57.299 29.630 0.00 0.00 0.00 1.82
4960 7082 0.178068 CGATTCTCGGAACACCCCAT 59.822 55.000 0.00 0.00 36.00 4.00
5032 7154 5.424757 TGTAGAATGTAGAAACCAATCCGG 58.575 41.667 0.00 0.00 42.50 5.14
5033 7155 8.657074 TTATGTAGAATGTAGAAACCAATCCG 57.343 34.615 0.00 0.00 0.00 4.18
5054 7176 7.985752 GGGACGGAGGGAGTATATAAAATTATG 59.014 40.741 0.00 0.00 0.00 1.90
5055 7177 7.681168 TGGGACGGAGGGAGTATATAAAATTAT 59.319 37.037 0.00 0.00 0.00 1.28
5056 7178 7.018150 TGGGACGGAGGGAGTATATAAAATTA 58.982 38.462 0.00 0.00 0.00 1.40
5057 7179 5.847817 TGGGACGGAGGGAGTATATAAAATT 59.152 40.000 0.00 0.00 0.00 1.82
5060 7182 4.474303 TGGGACGGAGGGAGTATATAAA 57.526 45.455 0.00 0.00 0.00 1.40
5061 7183 4.687262 ATGGGACGGAGGGAGTATATAA 57.313 45.455 0.00 0.00 0.00 0.98
5063 7185 4.687262 TTATGGGACGGAGGGAGTATAT 57.313 45.455 0.00 0.00 0.00 0.86
5064 7186 4.687262 ATTATGGGACGGAGGGAGTATA 57.313 45.455 0.00 0.00 0.00 1.47
5065 7187 3.562108 ATTATGGGACGGAGGGAGTAT 57.438 47.619 0.00 0.00 0.00 2.12
5066 7188 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
5067 7189 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
5068 7190 7.671302 CATAATATATTATGGGACGGAGGGAG 58.329 42.308 27.49 6.81 43.58 4.30
5069 7191 7.612065 CATAATATATTATGGGACGGAGGGA 57.388 40.000 27.49 0.00 43.58 4.20
5080 7202 7.290248 ACTCCCTCCGTCCCATAATATATTATG 59.710 40.741 27.94 27.94 45.70 1.90
5081 7203 7.290248 CACTCCCTCCGTCCCATAATATATTAT 59.710 40.741 11.51 11.51 33.44 1.28
5082 7204 6.610020 CACTCCCTCCGTCCCATAATATATTA 59.390 42.308 7.62 7.62 0.00 0.98
5083 7205 5.425539 CACTCCCTCCGTCCCATAATATATT 59.574 44.000 2.97 2.97 0.00 1.28
5084 7206 4.962995 CACTCCCTCCGTCCCATAATATAT 59.037 45.833 0.00 0.00 0.00 0.86
5085 7207 4.202749 ACACTCCCTCCGTCCCATAATATA 60.203 45.833 0.00 0.00 0.00 0.86
5086 7208 3.173965 CACTCCCTCCGTCCCATAATAT 58.826 50.000 0.00 0.00 0.00 1.28
5087 7209 2.090943 ACACTCCCTCCGTCCCATAATA 60.091 50.000 0.00 0.00 0.00 0.98
5088 7210 1.344087 ACACTCCCTCCGTCCCATAAT 60.344 52.381 0.00 0.00 0.00 1.28
5089 7211 0.042131 ACACTCCCTCCGTCCCATAA 59.958 55.000 0.00 0.00 0.00 1.90
5090 7212 0.928505 TACACTCCCTCCGTCCCATA 59.071 55.000 0.00 0.00 0.00 2.74
5091 7213 0.042131 TTACACTCCCTCCGTCCCAT 59.958 55.000 0.00 0.00 0.00 4.00
5092 7214 0.042131 ATTACACTCCCTCCGTCCCA 59.958 55.000 0.00 0.00 0.00 4.37
5093 7215 0.464452 CATTACACTCCCTCCGTCCC 59.536 60.000 0.00 0.00 0.00 4.46
5094 7216 1.192428 ACATTACACTCCCTCCGTCC 58.808 55.000 0.00 0.00 0.00 4.79
5095 7217 4.179298 GTTTACATTACACTCCCTCCGTC 58.821 47.826 0.00 0.00 0.00 4.79
5096 7218 3.579586 TGTTTACATTACACTCCCTCCGT 59.420 43.478 0.00 0.00 0.00 4.69
5097 7219 4.196626 TGTTTACATTACACTCCCTCCG 57.803 45.455 0.00 0.00 0.00 4.63
5098 7220 6.887626 TTTTGTTTACATTACACTCCCTCC 57.112 37.500 0.00 0.00 0.00 4.30
5099 7221 9.758651 AAAATTTTGTTTACATTACACTCCCTC 57.241 29.630 1.75 0.00 0.00 4.30
5133 7256 3.117131 GGTGATGGGGATGGGTATTTTCT 60.117 47.826 0.00 0.00 0.00 2.52
5134 7257 3.230976 GGTGATGGGGATGGGTATTTTC 58.769 50.000 0.00 0.00 0.00 2.29
5138 7261 1.449271 CTGGTGATGGGGATGGGTAT 58.551 55.000 0.00 0.00 0.00 2.73
5139 7262 1.352622 GCTGGTGATGGGGATGGGTA 61.353 60.000 0.00 0.00 0.00 3.69
5143 7266 2.903855 GCGCTGGTGATGGGGATG 60.904 66.667 0.00 0.00 0.00 3.51
5144 7267 2.687418 GATGCGCTGGTGATGGGGAT 62.687 60.000 9.73 0.00 0.00 3.85
5145 7268 3.405093 GATGCGCTGGTGATGGGGA 62.405 63.158 9.73 0.00 0.00 4.81
5147 7270 2.903855 GGATGCGCTGGTGATGGG 60.904 66.667 9.73 0.00 0.00 4.00
5148 7271 2.903855 GGGATGCGCTGGTGATGG 60.904 66.667 9.73 0.00 0.00 3.51
5149 7272 2.903855 GGGGATGCGCTGGTGATG 60.904 66.667 9.73 0.00 0.00 3.07
5150 7273 4.195334 GGGGGATGCGCTGGTGAT 62.195 66.667 9.73 0.00 0.00 3.06
5152 7275 4.511246 ATGGGGGATGCGCTGGTG 62.511 66.667 9.73 0.00 0.00 4.17
5153 7276 4.511246 CATGGGGGATGCGCTGGT 62.511 66.667 9.73 0.00 0.00 4.00
5154 7277 4.193893 TCATGGGGGATGCGCTGG 62.194 66.667 9.73 0.00 31.32 4.85
5155 7278 2.898920 AAGTCATGGGGGATGCGCTG 62.899 60.000 9.73 0.00 31.32 5.18
5156 7279 1.344953 TAAGTCATGGGGGATGCGCT 61.345 55.000 9.73 0.00 31.32 5.92
5157 7280 0.465460 TTAAGTCATGGGGGATGCGC 60.465 55.000 0.00 0.00 31.32 6.09
5158 7281 2.051334 TTTAAGTCATGGGGGATGCG 57.949 50.000 0.00 0.00 31.32 4.73
5159 7282 5.774690 TCAATATTTAAGTCATGGGGGATGC 59.225 40.000 0.00 0.00 31.32 3.91
5189 7312 6.677781 TCCAATGAAATTAGTTTAGCCTCG 57.322 37.500 0.00 0.00 32.46 4.63
5277 7400 6.267928 GGAGTCTAGGAGGCTTTATATGTTCA 59.732 42.308 0.00 0.00 24.78 3.18
5281 7404 7.639113 CTAGGAGTCTAGGAGGCTTTATATG 57.361 44.000 0.00 0.00 39.36 1.78
5294 7417 1.950909 CGGTTCTGCCTAGGAGTCTAG 59.049 57.143 14.75 2.08 41.95 2.43
5295 7418 1.562942 TCGGTTCTGCCTAGGAGTCTA 59.437 52.381 14.75 0.00 34.25 2.59
5296 7419 0.331954 TCGGTTCTGCCTAGGAGTCT 59.668 55.000 14.75 0.00 34.25 3.24
5297 7420 1.067821 CATCGGTTCTGCCTAGGAGTC 59.932 57.143 14.75 0.00 34.25 3.36
5298 7421 1.115467 CATCGGTTCTGCCTAGGAGT 58.885 55.000 14.75 0.00 34.25 3.85
5299 7422 0.390860 CCATCGGTTCTGCCTAGGAG 59.609 60.000 14.75 7.43 34.25 3.69
5300 7423 1.686325 GCCATCGGTTCTGCCTAGGA 61.686 60.000 14.75 0.00 34.25 2.94
5301 7424 1.227674 GCCATCGGTTCTGCCTAGG 60.228 63.158 3.67 3.67 34.25 3.02
5302 7425 0.249657 GAGCCATCGGTTCTGCCTAG 60.250 60.000 0.00 0.00 34.25 3.02
5303 7426 1.686325 GGAGCCATCGGTTCTGCCTA 61.686 60.000 0.00 0.00 33.37 3.93
5304 7427 2.586792 GAGCCATCGGTTCTGCCT 59.413 61.111 0.00 0.00 34.25 4.75
5305 7428 2.514824 GGAGCCATCGGTTCTGCC 60.515 66.667 0.00 0.00 33.37 4.85
5306 7429 1.817099 CTGGAGCCATCGGTTCTGC 60.817 63.158 0.00 0.00 33.37 4.26
5307 7430 1.817099 GCTGGAGCCATCGGTTCTG 60.817 63.158 0.00 0.00 33.37 3.02
5308 7431 2.586792 GCTGGAGCCATCGGTTCT 59.413 61.111 0.00 0.00 33.37 3.01
5309 7432 2.892425 CGCTGGAGCCATCGGTTC 60.892 66.667 4.93 0.00 37.91 3.62
5331 7454 2.987355 TTTTTCCCCTCGGGTGGTGC 62.987 60.000 0.55 0.00 44.74 5.01
5332 7455 1.151908 TTTTTCCCCTCGGGTGGTG 59.848 57.895 0.55 0.00 44.74 4.17
5333 7456 3.677012 TTTTTCCCCTCGGGTGGT 58.323 55.556 0.55 0.00 44.74 4.16
5347 7470 2.802106 CACGGTGCGGTGGTTTTT 59.198 55.556 0.00 0.00 34.27 1.94
5348 7471 3.894947 GCACGGTGCGGTGGTTTT 61.895 61.111 18.35 0.00 38.36 2.43
5365 7488 2.187599 CTCTTTTTCCCCACGCGCAG 62.188 60.000 5.73 2.42 0.00 5.18
5366 7489 2.203224 TCTTTTTCCCCACGCGCA 60.203 55.556 5.73 0.00 0.00 6.09
5367 7490 1.912371 CTCTCTTTTTCCCCACGCGC 61.912 60.000 5.73 0.00 0.00 6.86
5368 7491 1.298859 CCTCTCTTTTTCCCCACGCG 61.299 60.000 3.53 3.53 0.00 6.01
5369 7492 0.960861 CCCTCTCTTTTTCCCCACGC 60.961 60.000 0.00 0.00 0.00 5.34
5370 7493 0.960861 GCCCTCTCTTTTTCCCCACG 60.961 60.000 0.00 0.00 0.00 4.94
5371 7494 0.960861 CGCCCTCTCTTTTTCCCCAC 60.961 60.000 0.00 0.00 0.00 4.61
5372 7495 1.378762 CGCCCTCTCTTTTTCCCCA 59.621 57.895 0.00 0.00 0.00 4.96
5373 7496 2.046864 GCGCCCTCTCTTTTTCCCC 61.047 63.158 0.00 0.00 0.00 4.81
5374 7497 1.303317 TGCGCCCTCTCTTTTTCCC 60.303 57.895 4.18 0.00 0.00 3.97
5375 7498 1.587043 GGTGCGCCCTCTCTTTTTCC 61.587 60.000 4.45 0.00 0.00 3.13
5376 7499 1.876664 GGTGCGCCCTCTCTTTTTC 59.123 57.895 4.45 0.00 0.00 2.29
5377 7500 1.966451 CGGTGCGCCCTCTCTTTTT 60.966 57.895 11.56 0.00 0.00 1.94
5378 7501 2.358737 CGGTGCGCCCTCTCTTTT 60.359 61.111 11.56 0.00 0.00 2.27
5391 7514 3.337889 CACTCGTGTGGTGCGGTG 61.338 66.667 9.74 0.00 40.33 4.94
5392 7515 2.581208 TTTCACTCGTGTGGTGCGGT 62.581 55.000 16.88 0.00 43.94 5.68
5393 7516 1.433053 TTTTCACTCGTGTGGTGCGG 61.433 55.000 16.88 0.00 43.94 5.69
5394 7517 0.375454 TTTTTCACTCGTGTGGTGCG 59.625 50.000 16.88 0.00 43.94 5.34
5395 7518 2.774439 ATTTTTCACTCGTGTGGTGC 57.226 45.000 16.88 0.00 43.94 5.01
5396 7519 4.523813 GTGTATTTTTCACTCGTGTGGTG 58.476 43.478 16.88 6.10 43.94 4.17
5397 7520 3.562557 GGTGTATTTTTCACTCGTGTGGT 59.437 43.478 16.88 2.63 43.94 4.16
5398 7521 3.363575 CGGTGTATTTTTCACTCGTGTGG 60.364 47.826 16.88 0.00 43.94 4.17
5399 7522 3.794536 CGGTGTATTTTTCACTCGTGTG 58.205 45.455 11.32 11.32 45.07 3.82
5400 7523 2.222445 GCGGTGTATTTTTCACTCGTGT 59.778 45.455 0.00 0.00 36.25 4.49
5401 7524 2.222213 TGCGGTGTATTTTTCACTCGTG 59.778 45.455 0.00 0.00 36.25 4.35
5402 7525 2.222445 GTGCGGTGTATTTTTCACTCGT 59.778 45.455 0.00 0.00 36.25 4.18
5407 7530 0.238817 GCGGTGCGGTGTATTTTTCA 59.761 50.000 0.00 0.00 0.00 2.69
5443 7566 4.525949 GGGGCTAGGGTTCGACGC 62.526 72.222 0.00 0.00 0.00 5.19
5445 7568 0.179054 GATTGGGGCTAGGGTTCGAC 60.179 60.000 0.00 0.00 0.00 4.20
5554 8144 2.352032 GCGGTGGAGGAGTAGCAGT 61.352 63.158 0.00 0.00 0.00 4.40
5555 8145 2.496817 GCGGTGGAGGAGTAGCAG 59.503 66.667 0.00 0.00 0.00 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.