Multiple sequence alignment - TraesCS5A01G148800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G148800 chr5A 100.000 3224 0 0 1 3224 326438871 326435648 0.000000e+00 5954.0
1 TraesCS5A01G148800 chr5A 90.875 263 21 3 455 715 386169521 386169782 1.840000e-92 350.0
2 TraesCS5A01G148800 chr2D 90.268 2127 123 42 714 2770 83224967 83227079 0.000000e+00 2704.0
3 TraesCS5A01G148800 chr2D 90.451 2105 112 34 714 2773 127821610 127819550 0.000000e+00 2691.0
4 TraesCS5A01G148800 chr2D 92.197 1871 108 17 895 2748 83529898 83531747 0.000000e+00 2612.0
5 TraesCS5A01G148800 chr2D 85.779 1772 124 37 1033 2773 85251793 85250119 0.000000e+00 1759.0
6 TraesCS5A01G148800 chr2D 91.333 1050 54 23 714 1726 83188148 83189197 0.000000e+00 1400.0
7 TraesCS5A01G148800 chr2D 90.891 1010 72 12 1720 2717 83189221 83190222 0.000000e+00 1338.0
8 TraesCS5A01G148800 chr2D 93.711 318 18 2 2795 3111 83532957 83533273 2.910000e-130 475.0
9 TraesCS5A01G148800 chr2D 90.038 261 24 2 456 715 316662408 316662149 1.430000e-88 337.0
10 TraesCS5A01G148800 chr2D 92.982 114 8 0 3111 3224 83533349 83533462 1.990000e-37 167.0
11 TraesCS5A01G148800 chr2D 83.333 90 15 0 711 800 83206744 83206833 2.060000e-12 84.2
12 TraesCS5A01G148800 chr2A 90.356 2105 126 27 714 2773 134867724 134865652 0.000000e+00 2691.0
13 TraesCS5A01G148800 chr2A 91.361 1829 110 22 814 2604 83984882 83986700 0.000000e+00 2459.0
14 TraesCS5A01G148800 chr2A 87.203 2063 139 40 736 2743 83989925 83991917 0.000000e+00 2231.0
15 TraesCS5A01G148800 chr2A 87.546 1911 123 40 895 2773 84143618 84145445 0.000000e+00 2104.0
16 TraesCS5A01G148800 chr2A 94.822 309 16 0 2803 3111 84231648 84231956 1.740000e-132 483.0
17 TraesCS5A01G148800 chr2A 94.318 88 5 0 714 801 733423619 733423532 5.610000e-28 135.0
18 TraesCS5A01G148800 chr2A 90.099 101 9 1 3119 3218 84232044 84232144 2.610000e-26 130.0
19 TraesCS5A01G148800 chr2A 77.273 264 22 14 2998 3224 84230865 84231127 1.570000e-23 121.0
20 TraesCS5A01G148800 chr2A 82.609 92 14 1 711 800 84012608 84012699 2.670000e-11 80.5
21 TraesCS5A01G148800 chr2B 91.334 1904 113 24 900 2770 135357952 135359836 0.000000e+00 2555.0
22 TraesCS5A01G148800 chr2B 87.090 1890 153 42 919 2765 137814510 137812669 0.000000e+00 2054.0
23 TraesCS5A01G148800 chr2B 88.804 1697 126 36 947 2604 137349315 137347644 0.000000e+00 2023.0
24 TraesCS5A01G148800 chr2B 93.100 1029 48 8 721 1726 135126478 135127506 0.000000e+00 1485.0
25 TraesCS5A01G148800 chr2B 91.157 1063 65 21 1720 2770 135198880 135199925 0.000000e+00 1415.0
26 TraesCS5A01G148800 chr2B 90.593 1063 75 16 1720 2773 182152485 182151439 0.000000e+00 1386.0
27 TraesCS5A01G148800 chr2B 90.383 1071 54 28 1720 2773 135464494 135465532 0.000000e+00 1362.0
28 TraesCS5A01G148800 chr5D 95.248 1452 48 10 714 2145 230368826 230370276 0.000000e+00 2279.0
29 TraesCS5A01G148800 chr5D 96.095 973 28 2 2262 3224 230370275 230371247 0.000000e+00 1578.0
30 TraesCS5A01G148800 chrUn 92.771 913 56 4 895 1806 25419699 25418796 0.000000e+00 1312.0
31 TraesCS5A01G148800 chr7D 84.455 431 64 3 14 444 617078529 617078102 3.850000e-114 422.0
32 TraesCS5A01G148800 chr7D 90.421 261 23 2 456 715 272759185 272759444 3.080000e-90 342.0
33 TraesCS5A01G148800 chr7D 90.076 262 24 2 456 715 459743134 459742873 3.980000e-89 339.0
34 TraesCS5A01G148800 chr7D 90.038 261 24 2 456 715 270700100 270700359 1.430000e-88 337.0
35 TraesCS5A01G148800 chr6B 91.353 266 20 3 454 717 113783174 113783438 8.500000e-96 361.0
36 TraesCS5A01G148800 chr3D 90.566 265 23 2 453 716 575973879 575973616 1.840000e-92 350.0
37 TraesCS5A01G148800 chr5B 90.226 266 24 2 456 720 27825040 27825304 2.380000e-91 346.0
38 TraesCS5A01G148800 chr4D 90.494 263 22 3 456 716 78773929 78773668 8.560000e-91 344.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G148800 chr5A 326435648 326438871 3223 True 5954.000000 5954 100.000000 1 3224 1 chr5A.!!$R1 3223
1 TraesCS5A01G148800 chr2D 83224967 83227079 2112 False 2704.000000 2704 90.268000 714 2770 1 chr2D.!!$F2 2056
2 TraesCS5A01G148800 chr2D 127819550 127821610 2060 True 2691.000000 2691 90.451000 714 2773 1 chr2D.!!$R2 2059
3 TraesCS5A01G148800 chr2D 85250119 85251793 1674 True 1759.000000 1759 85.779000 1033 2773 1 chr2D.!!$R1 1740
4 TraesCS5A01G148800 chr2D 83188148 83190222 2074 False 1369.000000 1400 91.112000 714 2717 2 chr2D.!!$F3 2003
5 TraesCS5A01G148800 chr2D 83529898 83533462 3564 False 1084.666667 2612 92.963333 895 3224 3 chr2D.!!$F4 2329
6 TraesCS5A01G148800 chr2A 134865652 134867724 2072 True 2691.000000 2691 90.356000 714 2773 1 chr2A.!!$R1 2059
7 TraesCS5A01G148800 chr2A 83984882 83991917 7035 False 2345.000000 2459 89.282000 736 2743 2 chr2A.!!$F3 2007
8 TraesCS5A01G148800 chr2A 84143618 84145445 1827 False 2104.000000 2104 87.546000 895 2773 1 chr2A.!!$F2 1878
9 TraesCS5A01G148800 chr2A 84230865 84232144 1279 False 244.666667 483 87.398000 2803 3224 3 chr2A.!!$F4 421
10 TraesCS5A01G148800 chr2B 135357952 135359836 1884 False 2555.000000 2555 91.334000 900 2770 1 chr2B.!!$F3 1870
11 TraesCS5A01G148800 chr2B 137812669 137814510 1841 True 2054.000000 2054 87.090000 919 2765 1 chr2B.!!$R2 1846
12 TraesCS5A01G148800 chr2B 137347644 137349315 1671 True 2023.000000 2023 88.804000 947 2604 1 chr2B.!!$R1 1657
13 TraesCS5A01G148800 chr2B 135126478 135127506 1028 False 1485.000000 1485 93.100000 721 1726 1 chr2B.!!$F1 1005
14 TraesCS5A01G148800 chr2B 135198880 135199925 1045 False 1415.000000 1415 91.157000 1720 2770 1 chr2B.!!$F2 1050
15 TraesCS5A01G148800 chr2B 182151439 182152485 1046 True 1386.000000 1386 90.593000 1720 2773 1 chr2B.!!$R3 1053
16 TraesCS5A01G148800 chr2B 135464494 135465532 1038 False 1362.000000 1362 90.383000 1720 2773 1 chr2B.!!$F4 1053
17 TraesCS5A01G148800 chr5D 230368826 230371247 2421 False 1928.500000 2279 95.671500 714 3224 2 chr5D.!!$F1 2510
18 TraesCS5A01G148800 chrUn 25418796 25419699 903 True 1312.000000 1312 92.771000 895 1806 1 chrUn.!!$R1 911

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
331 332 0.029834 CCAATGTGCTAGGCATTCGC 59.970 55.0 0.0 0.0 41.91 4.70 F
336 337 0.103937 GTGCTAGGCATTCGCTCTCT 59.896 55.0 0.0 0.0 41.91 3.10 F
470 471 0.338814 ACAATACTCCCTCCGGTCCT 59.661 55.0 0.0 0.0 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1846 7063 0.040067 CCCTTCTTGCACGCAAAGTC 60.040 55.000 5.87 0.00 35.33 3.01 R
1850 7067 2.424842 ATCCCCCTTCTTGCACGCAA 62.425 55.000 4.12 4.12 0.00 4.85 R
2238 7470 7.012704 GGCTCATCTGCTTCACTTTGATTATTA 59.987 37.037 0.00 0.00 0.00 0.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.209091 AGATACGGGGACTGGAGTG 57.791 57.895 0.00 0.00 40.47 3.51
19 20 0.397254 AGATACGGGGACTGGAGTGG 60.397 60.000 0.00 0.00 40.47 4.00
20 21 0.686769 GATACGGGGACTGGAGTGGT 60.687 60.000 0.00 0.00 40.47 4.16
22 23 3.706373 CGGGGACTGGAGTGGTGG 61.706 72.222 0.00 0.00 0.00 4.61
24 25 2.930562 GGGACTGGAGTGGTGGCT 60.931 66.667 0.00 0.00 0.00 4.75
25 26 2.665603 GGACTGGAGTGGTGGCTC 59.334 66.667 0.00 0.00 34.89 4.70
27 28 3.302347 GACTGGAGTGGTGGCTCGG 62.302 68.421 0.00 0.00 36.41 4.63
28 29 4.087892 CTGGAGTGGTGGCTCGGG 62.088 72.222 0.00 0.00 36.41 5.14
30 31 3.083997 GGAGTGGTGGCTCGGGAT 61.084 66.667 0.00 0.00 36.41 3.85
31 32 2.187946 GAGTGGTGGCTCGGGATG 59.812 66.667 0.00 0.00 0.00 3.51
32 33 2.284625 AGTGGTGGCTCGGGATGA 60.285 61.111 0.00 0.00 0.00 2.92
33 34 1.690219 GAGTGGTGGCTCGGGATGAT 61.690 60.000 0.00 0.00 0.00 2.45
34 35 1.227674 GTGGTGGCTCGGGATGATC 60.228 63.158 0.00 0.00 0.00 2.92
35 36 2.029666 GGTGGCTCGGGATGATCG 59.970 66.667 0.00 0.00 0.00 3.69
36 37 2.029666 GTGGCTCGGGATGATCGG 59.970 66.667 0.00 0.00 0.00 4.18
37 38 3.233980 TGGCTCGGGATGATCGGG 61.234 66.667 0.00 0.00 0.00 5.14
40 41 2.524394 CTCGGGATGATCGGGGGT 60.524 66.667 0.00 0.00 0.00 4.95
42 43 3.626924 CGGGATGATCGGGGGTCC 61.627 72.222 0.00 0.00 0.00 4.46
45 46 0.473117 GGGATGATCGGGGGTCCTTA 60.473 60.000 0.00 0.00 0.00 2.69
46 47 1.657804 GGATGATCGGGGGTCCTTAT 58.342 55.000 0.00 0.00 0.00 1.73
50 51 1.133915 TGATCGGGGGTCCTTATTTGC 60.134 52.381 0.00 0.00 0.00 3.68
53 54 0.814010 CGGGGGTCCTTATTTGCGAG 60.814 60.000 0.00 0.00 0.00 5.03
54 55 0.544697 GGGGGTCCTTATTTGCGAGA 59.455 55.000 0.00 0.00 0.00 4.04
55 56 1.143073 GGGGGTCCTTATTTGCGAGAT 59.857 52.381 0.00 0.00 0.00 2.75
56 57 2.222027 GGGGTCCTTATTTGCGAGATG 58.778 52.381 0.00 0.00 0.00 2.90
57 58 1.604278 GGGTCCTTATTTGCGAGATGC 59.396 52.381 0.00 0.00 46.70 3.91
58 59 2.565841 GGTCCTTATTTGCGAGATGCT 58.434 47.619 0.00 0.00 46.63 3.79
59 60 2.545946 GGTCCTTATTTGCGAGATGCTC 59.454 50.000 0.00 0.00 46.63 4.26
60 61 3.462021 GTCCTTATTTGCGAGATGCTCT 58.538 45.455 0.00 0.00 46.63 4.09
61 62 4.501571 GGTCCTTATTTGCGAGATGCTCTA 60.502 45.833 0.00 0.00 46.63 2.43
62 63 5.050490 GTCCTTATTTGCGAGATGCTCTAA 58.950 41.667 0.00 0.00 46.63 2.10
63 64 5.523916 GTCCTTATTTGCGAGATGCTCTAAA 59.476 40.000 0.00 0.00 46.63 1.85
64 65 6.203723 GTCCTTATTTGCGAGATGCTCTAAAT 59.796 38.462 0.00 0.00 46.63 1.40
65 66 7.385205 GTCCTTATTTGCGAGATGCTCTAAATA 59.615 37.037 0.00 0.00 46.63 1.40
66 67 7.385205 TCCTTATTTGCGAGATGCTCTAAATAC 59.615 37.037 0.00 0.00 46.63 1.89
67 68 7.171508 CCTTATTTGCGAGATGCTCTAAATACA 59.828 37.037 0.00 0.00 46.63 2.29
68 69 5.718649 TTTGCGAGATGCTCTAAATACAC 57.281 39.130 0.00 0.00 46.63 2.90
69 70 4.385358 TGCGAGATGCTCTAAATACACA 57.615 40.909 0.00 0.00 46.63 3.72
70 71 4.363138 TGCGAGATGCTCTAAATACACAG 58.637 43.478 0.00 0.00 46.63 3.66
71 72 3.183373 GCGAGATGCTCTAAATACACAGC 59.817 47.826 0.00 0.00 41.73 4.40
74 75 5.291858 CGAGATGCTCTAAATACACAGCAAA 59.708 40.000 0.00 0.00 44.78 3.68
75 76 6.509199 CGAGATGCTCTAAATACACAGCAAAG 60.509 42.308 0.00 0.00 44.78 2.77
76 77 5.587844 AGATGCTCTAAATACACAGCAAAGG 59.412 40.000 0.00 0.00 44.78 3.11
77 78 4.905429 TGCTCTAAATACACAGCAAAGGA 58.095 39.130 0.00 0.00 38.93 3.36
78 79 4.937620 TGCTCTAAATACACAGCAAAGGAG 59.062 41.667 0.00 0.00 38.93 3.69
80 81 5.734720 CTCTAAATACACAGCAAAGGAGGA 58.265 41.667 0.00 0.00 0.00 3.71
81 82 6.313519 TCTAAATACACAGCAAAGGAGGAT 57.686 37.500 0.00 0.00 0.00 3.24
82 83 6.349300 TCTAAATACACAGCAAAGGAGGATC 58.651 40.000 0.00 0.00 0.00 3.36
99 100 6.729391 GAGGATCCTTTTATAGCCGAAATC 57.271 41.667 17.42 0.00 0.00 2.17
100 101 5.561679 AGGATCCTTTTATAGCCGAAATCC 58.438 41.667 9.02 0.00 0.00 3.01
103 104 6.819146 GGATCCTTTTATAGCCGAAATCCTAG 59.181 42.308 3.84 0.00 0.00 3.02
104 105 5.548406 TCCTTTTATAGCCGAAATCCTAGC 58.452 41.667 0.00 0.00 0.00 3.42
106 107 5.998363 CCTTTTATAGCCGAAATCCTAGCTT 59.002 40.000 0.00 0.00 36.79 3.74
107 108 6.073003 CCTTTTATAGCCGAAATCCTAGCTTG 60.073 42.308 0.00 0.00 36.79 4.01
108 109 2.240493 TAGCCGAAATCCTAGCTTGC 57.760 50.000 0.00 0.00 36.79 4.01
109 110 0.464554 AGCCGAAATCCTAGCTTGCC 60.465 55.000 0.00 0.00 29.27 4.52
110 111 1.776034 GCCGAAATCCTAGCTTGCCG 61.776 60.000 0.00 0.00 0.00 5.69
111 112 1.160329 CCGAAATCCTAGCTTGCCGG 61.160 60.000 0.00 0.00 0.00 6.13
112 113 1.160329 CGAAATCCTAGCTTGCCGGG 61.160 60.000 2.18 0.00 0.00 5.73
113 114 0.180406 GAAATCCTAGCTTGCCGGGA 59.820 55.000 2.18 0.00 0.00 5.14
114 115 0.846693 AAATCCTAGCTTGCCGGGAT 59.153 50.000 2.18 9.87 39.91 3.85
115 116 0.109342 AATCCTAGCTTGCCGGGATG 59.891 55.000 2.18 3.41 38.42 3.51
116 117 2.403132 ATCCTAGCTTGCCGGGATGC 62.403 60.000 23.88 23.88 37.22 3.91
118 119 1.890979 CTAGCTTGCCGGGATGCAG 60.891 63.158 30.67 21.93 43.21 4.41
119 120 2.599645 CTAGCTTGCCGGGATGCAGT 62.600 60.000 30.67 16.67 43.21 4.40
120 121 2.874648 TAGCTTGCCGGGATGCAGTG 62.875 60.000 30.67 8.82 43.21 3.66
121 122 2.046023 CTTGCCGGGATGCAGTGA 60.046 61.111 2.18 0.00 43.21 3.41
124 125 3.512516 GCCGGGATGCAGTGAAGC 61.513 66.667 2.18 0.00 0.00 3.86
127 128 0.531532 CCGGGATGCAGTGAAGCTAG 60.532 60.000 0.00 0.00 34.99 3.42
128 129 1.156645 CGGGATGCAGTGAAGCTAGC 61.157 60.000 6.62 6.62 34.99 3.42
129 130 0.179936 GGGATGCAGTGAAGCTAGCT 59.820 55.000 12.68 12.68 34.99 3.32
130 131 1.414181 GGGATGCAGTGAAGCTAGCTA 59.586 52.381 19.70 0.00 34.99 3.32
133 134 2.609427 TGCAGTGAAGCTAGCTATGG 57.391 50.000 19.70 7.50 34.99 2.74
134 135 2.110578 TGCAGTGAAGCTAGCTATGGA 58.889 47.619 19.70 12.88 34.99 3.41
135 136 2.702478 TGCAGTGAAGCTAGCTATGGAT 59.298 45.455 19.70 0.48 34.99 3.41
136 137 3.897505 TGCAGTGAAGCTAGCTATGGATA 59.102 43.478 19.70 0.00 34.99 2.59
137 138 4.021632 TGCAGTGAAGCTAGCTATGGATAG 60.022 45.833 19.70 6.42 34.84 2.08
139 140 5.105392 GCAGTGAAGCTAGCTATGGATAGAT 60.105 44.000 19.70 0.00 33.69 1.98
140 141 6.574073 GCAGTGAAGCTAGCTATGGATAGATT 60.574 42.308 19.70 4.43 41.75 2.40
142 143 8.694540 CAGTGAAGCTAGCTATGGATAGATTAT 58.305 37.037 19.70 0.00 39.64 1.28
162 163 8.249638 AGATTATTATCTCATGTGATCGTGGAG 58.750 37.037 13.32 0.00 36.34 3.86
163 164 7.524717 TTATTATCTCATGTGATCGTGGAGA 57.475 36.000 13.32 8.14 0.00 3.71
164 165 3.724508 ATCTCATGTGATCGTGGAGAC 57.275 47.619 4.42 0.00 0.00 3.36
166 167 0.455815 TCATGTGATCGTGGAGACGG 59.544 55.000 0.00 0.00 46.11 4.79
167 168 0.455815 CATGTGATCGTGGAGACGGA 59.544 55.000 0.00 0.00 46.11 4.69
168 169 1.067669 CATGTGATCGTGGAGACGGAT 59.932 52.381 0.00 0.00 46.11 4.18
171 172 1.135083 GTGATCGTGGAGACGGATTGT 60.135 52.381 0.00 0.00 46.11 2.71
182 183 2.896168 GACGGATTGTCGGTCCATTTA 58.104 47.619 6.43 0.00 39.79 1.40
183 184 3.463944 GACGGATTGTCGGTCCATTTAT 58.536 45.455 6.43 0.00 39.79 1.40
184 185 4.624015 GACGGATTGTCGGTCCATTTATA 58.376 43.478 6.43 0.00 39.79 0.98
185 186 4.374399 ACGGATTGTCGGTCCATTTATAC 58.626 43.478 0.00 0.00 35.41 1.47
187 188 5.302568 ACGGATTGTCGGTCCATTTATACTA 59.697 40.000 0.00 0.00 35.41 1.82
188 189 6.014840 ACGGATTGTCGGTCCATTTATACTAT 60.015 38.462 0.00 0.00 35.41 2.12
189 190 6.310467 CGGATTGTCGGTCCATTTATACTATG 59.690 42.308 0.00 0.00 35.41 2.23
190 191 7.159372 GGATTGTCGGTCCATTTATACTATGT 58.841 38.462 0.00 0.00 35.76 2.29
191 192 7.117812 GGATTGTCGGTCCATTTATACTATGTG 59.882 40.741 0.00 0.00 35.76 3.21
192 193 5.849510 TGTCGGTCCATTTATACTATGTGG 58.150 41.667 0.00 0.00 0.00 4.17
193 194 5.599242 TGTCGGTCCATTTATACTATGTGGA 59.401 40.000 0.00 0.00 36.66 4.02
200 201 7.735917 TCCATTTATACTATGTGGACTCAAGG 58.264 38.462 0.00 0.00 34.23 3.61
201 202 7.567250 TCCATTTATACTATGTGGACTCAAGGA 59.433 37.037 0.00 0.00 34.23 3.36
202 203 7.875041 CCATTTATACTATGTGGACTCAAGGAG 59.125 40.741 0.00 0.00 35.52 3.69
203 204 8.642432 CATTTATACTATGTGGACTCAAGGAGA 58.358 37.037 0.00 0.00 33.32 3.71
204 205 8.783660 TTTATACTATGTGGACTCAAGGAGAT 57.216 34.615 0.00 0.00 33.32 2.75
205 206 6.662865 ATACTATGTGGACTCAAGGAGATG 57.337 41.667 0.00 0.00 33.32 2.90
206 207 4.614475 ACTATGTGGACTCAAGGAGATGA 58.386 43.478 0.00 0.00 33.32 2.92
207 208 3.902881 ATGTGGACTCAAGGAGATGAC 57.097 47.619 0.00 0.00 33.32 3.06
208 209 2.608623 TGTGGACTCAAGGAGATGACA 58.391 47.619 0.00 0.00 33.32 3.58
209 210 2.564504 TGTGGACTCAAGGAGATGACAG 59.435 50.000 0.00 0.00 33.32 3.51
210 211 2.093764 GTGGACTCAAGGAGATGACAGG 60.094 54.545 0.00 0.00 33.32 4.00
211 212 2.183679 GGACTCAAGGAGATGACAGGT 58.816 52.381 0.00 0.00 33.32 4.00
214 215 2.830923 ACTCAAGGAGATGACAGGTCTG 59.169 50.000 0.00 0.00 33.32 3.51
216 217 4.019858 CTCAAGGAGATGACAGGTCTGTA 58.980 47.826 3.35 0.00 45.05 2.74
217 218 4.019858 TCAAGGAGATGACAGGTCTGTAG 58.980 47.826 3.35 0.00 45.05 2.74
218 219 3.025322 AGGAGATGACAGGTCTGTAGG 57.975 52.381 3.35 0.00 45.05 3.18
220 221 2.955660 GGAGATGACAGGTCTGTAGGAG 59.044 54.545 3.35 0.00 45.05 3.69
229 230 2.861147 GTCTGTAGGAGGCCAAGTTT 57.139 50.000 5.01 0.00 0.00 2.66
231 232 3.487372 GTCTGTAGGAGGCCAAGTTTTT 58.513 45.455 5.01 0.00 0.00 1.94
232 233 4.648651 GTCTGTAGGAGGCCAAGTTTTTA 58.351 43.478 5.01 0.00 0.00 1.52
234 235 4.595781 TCTGTAGGAGGCCAAGTTTTTAGA 59.404 41.667 5.01 0.00 0.00 2.10
237 238 5.768164 TGTAGGAGGCCAAGTTTTTAGAAAG 59.232 40.000 5.01 0.00 0.00 2.62
238 239 5.061721 AGGAGGCCAAGTTTTTAGAAAGA 57.938 39.130 5.01 0.00 0.00 2.52
239 240 5.645201 AGGAGGCCAAGTTTTTAGAAAGAT 58.355 37.500 5.01 0.00 0.00 2.40
240 241 5.478332 AGGAGGCCAAGTTTTTAGAAAGATG 59.522 40.000 5.01 0.00 0.00 2.90
241 242 5.139435 AGGCCAAGTTTTTAGAAAGATGC 57.861 39.130 5.01 0.00 0.00 3.91
242 243 3.920412 GGCCAAGTTTTTAGAAAGATGCG 59.080 43.478 0.00 0.00 0.00 4.73
244 245 5.335348 GGCCAAGTTTTTAGAAAGATGCGTA 60.335 40.000 0.00 0.00 0.00 4.42
246 247 6.567891 GCCAAGTTTTTAGAAAGATGCGTACT 60.568 38.462 0.00 0.00 0.00 2.73
247 248 7.360361 CCAAGTTTTTAGAAAGATGCGTACTT 58.640 34.615 0.00 0.00 0.00 2.24
248 249 8.500773 CCAAGTTTTTAGAAAGATGCGTACTTA 58.499 33.333 0.00 0.00 0.00 2.24
253 254 9.871238 TTTTTAGAAAGATGCGTACTTATCTCT 57.129 29.630 8.59 6.34 32.71 3.10
254 255 9.517609 TTTTAGAAAGATGCGTACTTATCTCTC 57.482 33.333 8.59 5.65 32.71 3.20
255 256 6.701145 AGAAAGATGCGTACTTATCTCTCA 57.299 37.500 10.37 0.00 32.71 3.27
257 258 7.367285 AGAAAGATGCGTACTTATCTCTCATC 58.633 38.462 10.37 0.00 32.71 2.92
258 259 5.637006 AGATGCGTACTTATCTCTCATCC 57.363 43.478 3.64 0.00 31.80 3.51
261 262 5.854010 TGCGTACTTATCTCTCATCCTTT 57.146 39.130 0.00 0.00 0.00 3.11
262 263 5.833082 TGCGTACTTATCTCTCATCCTTTC 58.167 41.667 0.00 0.00 0.00 2.62
263 264 5.359860 TGCGTACTTATCTCTCATCCTTTCA 59.640 40.000 0.00 0.00 0.00 2.69
264 265 5.918011 GCGTACTTATCTCTCATCCTTTCAG 59.082 44.000 0.00 0.00 0.00 3.02
265 266 6.442952 CGTACTTATCTCTCATCCTTTCAGG 58.557 44.000 0.00 0.00 36.46 3.86
266 267 5.885449 ACTTATCTCTCATCCTTTCAGGG 57.115 43.478 0.00 0.00 35.59 4.45
268 269 6.149616 ACTTATCTCTCATCCTTTCAGGGAT 58.850 40.000 0.00 0.00 46.02 3.85
269 270 6.619023 ACTTATCTCTCATCCTTTCAGGGATT 59.381 38.462 0.00 0.00 42.89 3.01
271 272 5.108187 TCTCTCATCCTTTCAGGGATTTG 57.892 43.478 0.00 0.00 42.89 2.32
272 273 4.784838 TCTCTCATCCTTTCAGGGATTTGA 59.215 41.667 0.00 0.00 42.89 2.69
273 274 5.431073 TCTCTCATCCTTTCAGGGATTTGAT 59.569 40.000 0.00 0.00 42.89 2.57
274 275 5.688807 TCTCATCCTTTCAGGGATTTGATC 58.311 41.667 0.00 0.00 42.89 2.92
275 276 5.431073 TCTCATCCTTTCAGGGATTTGATCT 59.569 40.000 0.00 0.00 42.89 2.75
278 279 6.388100 TCATCCTTTCAGGGATTTGATCTAGT 59.612 38.462 0.00 0.00 42.89 2.57
279 280 6.642733 TCCTTTCAGGGATTTGATCTAGTT 57.357 37.500 0.00 0.00 35.59 2.24
280 281 7.032598 TCCTTTCAGGGATTTGATCTAGTTT 57.967 36.000 0.00 0.00 35.59 2.66
281 282 7.470192 TCCTTTCAGGGATTTGATCTAGTTTT 58.530 34.615 0.00 0.00 35.59 2.43
282 283 7.950124 TCCTTTCAGGGATTTGATCTAGTTTTT 59.050 33.333 0.00 0.00 35.59 1.94
284 285 8.477419 TTTCAGGGATTTGATCTAGTTTTTGT 57.523 30.769 0.00 0.00 0.00 2.83
285 286 7.452880 TCAGGGATTTGATCTAGTTTTTGTG 57.547 36.000 0.00 0.00 0.00 3.33
286 287 6.071952 TCAGGGATTTGATCTAGTTTTTGTGC 60.072 38.462 0.00 0.00 0.00 4.57
287 288 5.774690 AGGGATTTGATCTAGTTTTTGTGCA 59.225 36.000 0.00 0.00 0.00 4.57
290 291 7.063780 GGGATTTGATCTAGTTTTTGTGCATTG 59.936 37.037 0.00 0.00 0.00 2.82
291 292 7.063780 GGATTTGATCTAGTTTTTGTGCATTGG 59.936 37.037 0.00 0.00 0.00 3.16
292 293 5.389859 TGATCTAGTTTTTGTGCATTGGG 57.610 39.130 0.00 0.00 0.00 4.12
293 294 5.076182 TGATCTAGTTTTTGTGCATTGGGA 58.924 37.500 0.00 0.00 0.00 4.37
294 295 5.183713 TGATCTAGTTTTTGTGCATTGGGAG 59.816 40.000 0.00 0.00 0.00 4.30
295 296 3.826157 TCTAGTTTTTGTGCATTGGGAGG 59.174 43.478 0.00 0.00 0.00 4.30
296 297 1.070601 AGTTTTTGTGCATTGGGAGGC 59.929 47.619 0.00 0.00 0.00 4.70
297 298 0.396060 TTTTTGTGCATTGGGAGGCC 59.604 50.000 0.00 0.00 0.00 5.19
298 299 0.762082 TTTTGTGCATTGGGAGGCCA 60.762 50.000 5.01 0.00 0.00 5.36
299 300 0.762082 TTTGTGCATTGGGAGGCCAA 60.762 50.000 5.01 0.00 0.00 4.52
300 301 1.470996 TTGTGCATTGGGAGGCCAAC 61.471 55.000 5.01 0.00 32.21 3.77
302 303 1.304381 TGCATTGGGAGGCCAACTC 60.304 57.895 5.01 0.00 45.84 3.01
303 304 1.000396 GCATTGGGAGGCCAACTCT 60.000 57.895 5.01 0.00 45.83 3.24
304 305 1.318158 GCATTGGGAGGCCAACTCTG 61.318 60.000 5.01 0.00 45.83 3.35
305 306 0.038744 CATTGGGAGGCCAACTCTGT 59.961 55.000 5.01 0.00 45.83 3.41
306 307 0.038744 ATTGGGAGGCCAACTCTGTG 59.961 55.000 5.01 0.00 45.83 3.66
307 308 2.067932 TTGGGAGGCCAACTCTGTGG 62.068 60.000 5.01 0.00 45.83 4.17
323 324 3.556817 TGGCTCACCAATGTGCTAG 57.443 52.632 1.86 0.00 45.37 3.42
324 325 0.035152 TGGCTCACCAATGTGCTAGG 60.035 55.000 0.00 0.00 45.37 3.02
325 326 1.379642 GGCTCACCAATGTGCTAGGC 61.380 60.000 0.00 0.00 43.44 3.93
326 327 0.677731 GCTCACCAATGTGCTAGGCA 60.678 55.000 0.00 0.00 42.46 4.75
327 328 2.020694 GCTCACCAATGTGCTAGGCAT 61.021 52.381 0.00 0.00 41.91 4.40
328 329 2.372264 CTCACCAATGTGCTAGGCATT 58.628 47.619 0.00 0.00 41.91 3.56
329 330 2.357009 CTCACCAATGTGCTAGGCATTC 59.643 50.000 0.00 0.00 41.91 2.67
330 331 1.064505 CACCAATGTGCTAGGCATTCG 59.935 52.381 0.00 0.00 41.91 3.34
331 332 0.029834 CCAATGTGCTAGGCATTCGC 59.970 55.000 0.00 0.00 41.91 4.70
333 334 1.003116 CAATGTGCTAGGCATTCGCTC 60.003 52.381 0.00 0.00 41.91 5.03
334 335 0.467384 ATGTGCTAGGCATTCGCTCT 59.533 50.000 0.00 0.00 41.91 4.09
335 336 0.179100 TGTGCTAGGCATTCGCTCTC 60.179 55.000 0.00 0.00 41.91 3.20
336 337 0.103937 GTGCTAGGCATTCGCTCTCT 59.896 55.000 0.00 0.00 41.91 3.10
337 338 0.826715 TGCTAGGCATTCGCTCTCTT 59.173 50.000 0.00 0.00 38.60 2.85
338 339 1.208052 TGCTAGGCATTCGCTCTCTTT 59.792 47.619 0.00 0.00 38.60 2.52
340 341 2.797719 GCTAGGCATTCGCTCTCTTTAC 59.202 50.000 0.00 0.00 38.60 2.01
342 343 2.622436 AGGCATTCGCTCTCTTTACAC 58.378 47.619 0.00 0.00 38.60 2.90
344 345 2.742053 GGCATTCGCTCTCTTTACACAA 59.258 45.455 0.00 0.00 38.60 3.33
345 346 3.424962 GGCATTCGCTCTCTTTACACAAC 60.425 47.826 0.00 0.00 38.60 3.32
346 347 3.433615 GCATTCGCTCTCTTTACACAACT 59.566 43.478 0.00 0.00 34.30 3.16
347 348 4.434857 GCATTCGCTCTCTTTACACAACTC 60.435 45.833 0.00 0.00 34.30 3.01
348 349 4.585955 TTCGCTCTCTTTACACAACTCT 57.414 40.909 0.00 0.00 0.00 3.24
349 350 4.585955 TCGCTCTCTTTACACAACTCTT 57.414 40.909 0.00 0.00 0.00 2.85
350 351 4.299155 TCGCTCTCTTTACACAACTCTTG 58.701 43.478 0.00 0.00 0.00 3.02
351 352 4.051922 CGCTCTCTTTACACAACTCTTGT 58.948 43.478 0.00 0.00 46.75 3.16
352 353 5.009310 TCGCTCTCTTTACACAACTCTTGTA 59.991 40.000 0.00 0.00 43.23 2.41
353 354 5.864474 CGCTCTCTTTACACAACTCTTGTAT 59.136 40.000 0.00 0.00 43.23 2.29
354 355 6.366332 CGCTCTCTTTACACAACTCTTGTATT 59.634 38.462 0.00 0.00 43.23 1.89
355 356 7.541091 CGCTCTCTTTACACAACTCTTGTATTA 59.459 37.037 0.00 0.00 43.23 0.98
358 359 9.653287 TCTCTTTACACAACTCTTGTATTATGG 57.347 33.333 0.00 0.00 43.23 2.74
359 360 9.653287 CTCTTTACACAACTCTTGTATTATGGA 57.347 33.333 0.00 0.00 43.23 3.41
361 362 7.821595 TTACACAACTCTTGTATTATGGACG 57.178 36.000 0.00 0.00 43.23 4.79
362 363 5.790593 ACACAACTCTTGTATTATGGACGT 58.209 37.500 0.00 0.00 43.23 4.34
363 364 6.927416 ACACAACTCTTGTATTATGGACGTA 58.073 36.000 0.00 0.00 43.23 3.57
366 367 8.540492 CACAACTCTTGTATTATGGACGTAATC 58.460 37.037 0.00 0.00 43.23 1.75
367 368 7.709613 ACAACTCTTGTATTATGGACGTAATCC 59.290 37.037 0.00 0.00 44.90 3.01
377 378 3.840124 GGACGTAATCCCTGATTTCCT 57.160 47.619 0.00 0.00 42.46 3.36
378 379 3.467803 GGACGTAATCCCTGATTTCCTG 58.532 50.000 0.00 0.00 42.46 3.86
379 380 3.134081 GGACGTAATCCCTGATTTCCTGA 59.866 47.826 0.00 0.00 42.46 3.86
380 381 4.202367 GGACGTAATCCCTGATTTCCTGAT 60.202 45.833 0.00 0.00 42.46 2.90
383 384 5.104527 ACGTAATCCCTGATTTCCTGATTGA 60.105 40.000 0.00 0.00 33.95 2.57
384 385 5.468072 CGTAATCCCTGATTTCCTGATTGAG 59.532 44.000 0.00 0.00 33.95 3.02
385 386 3.287867 TCCCTGATTTCCTGATTGAGC 57.712 47.619 0.00 0.00 0.00 4.26
386 387 2.577563 TCCCTGATTTCCTGATTGAGCA 59.422 45.455 0.00 0.00 0.00 4.26
387 388 3.203710 TCCCTGATTTCCTGATTGAGCAT 59.796 43.478 0.00 0.00 0.00 3.79
388 389 3.318275 CCCTGATTTCCTGATTGAGCATG 59.682 47.826 0.00 0.00 0.00 4.06
389 390 3.952323 CCTGATTTCCTGATTGAGCATGT 59.048 43.478 0.00 0.00 0.00 3.21
390 391 4.401519 CCTGATTTCCTGATTGAGCATGTT 59.598 41.667 0.00 0.00 0.00 2.71
391 392 5.450137 CCTGATTTCCTGATTGAGCATGTTC 60.450 44.000 2.05 2.05 0.00 3.18
393 394 5.477637 TGATTTCCTGATTGAGCATGTTCAA 59.522 36.000 24.60 24.60 41.00 2.69
403 404 5.093849 TGAGCATGTTCAATCAGAGATGA 57.906 39.130 10.10 0.00 0.00 2.92
404 405 5.681639 TGAGCATGTTCAATCAGAGATGAT 58.318 37.500 10.10 0.00 0.00 2.45
405 406 5.758784 TGAGCATGTTCAATCAGAGATGATC 59.241 40.000 10.10 0.00 35.51 2.92
406 407 5.064558 AGCATGTTCAATCAGAGATGATCC 58.935 41.667 0.00 0.00 0.00 3.36
407 408 4.820173 GCATGTTCAATCAGAGATGATCCA 59.180 41.667 0.00 0.00 0.00 3.41
408 409 5.277876 GCATGTTCAATCAGAGATGATCCAC 60.278 44.000 0.00 0.00 0.00 4.02
409 410 5.688814 TGTTCAATCAGAGATGATCCACT 57.311 39.130 0.00 0.00 0.00 4.00
410 411 6.058553 TGTTCAATCAGAGATGATCCACTT 57.941 37.500 0.00 0.00 0.00 3.16
411 412 5.878669 TGTTCAATCAGAGATGATCCACTTG 59.121 40.000 0.00 0.00 0.00 3.16
412 413 5.945144 TCAATCAGAGATGATCCACTTGA 57.055 39.130 0.00 0.00 0.00 3.02
413 414 6.303903 TCAATCAGAGATGATCCACTTGAA 57.696 37.500 0.00 0.00 0.00 2.69
415 416 6.766467 TCAATCAGAGATGATCCACTTGAATG 59.234 38.462 0.00 1.70 0.00 2.67
416 417 5.945144 TCAGAGATGATCCACTTGAATGA 57.055 39.130 0.00 0.00 0.00 2.57
417 418 6.303903 TCAGAGATGATCCACTTGAATGAA 57.696 37.500 0.00 0.00 0.00 2.57
418 419 6.896883 TCAGAGATGATCCACTTGAATGAAT 58.103 36.000 0.00 0.00 0.00 2.57
420 421 8.488668 TCAGAGATGATCCACTTGAATGAATAA 58.511 33.333 0.00 0.00 0.00 1.40
421 422 9.117183 CAGAGATGATCCACTTGAATGAATAAA 57.883 33.333 0.00 0.00 0.00 1.40
422 423 9.863650 AGAGATGATCCACTTGAATGAATAAAT 57.136 29.630 0.00 0.00 0.00 1.40
425 426 9.817365 GATGATCCACTTGAATGAATAAATACG 57.183 33.333 0.00 0.00 0.00 3.06
427 428 9.559732 TGATCCACTTGAATGAATAAATACGAT 57.440 29.630 0.00 0.00 0.00 3.73
428 429 9.817365 GATCCACTTGAATGAATAAATACGATG 57.183 33.333 0.00 0.00 0.00 3.84
429 430 7.639039 TCCACTTGAATGAATAAATACGATGC 58.361 34.615 0.00 0.00 0.00 3.91
430 431 7.281999 TCCACTTGAATGAATAAATACGATGCA 59.718 33.333 0.00 0.00 0.00 3.96
431 432 7.588854 CCACTTGAATGAATAAATACGATGCAG 59.411 37.037 0.00 0.00 0.00 4.41
432 433 8.124823 CACTTGAATGAATAAATACGATGCAGT 58.875 33.333 0.00 0.00 0.00 4.40
433 434 8.124823 ACTTGAATGAATAAATACGATGCAGTG 58.875 33.333 0.00 0.00 0.00 3.66
434 435 6.958255 TGAATGAATAAATACGATGCAGTGG 58.042 36.000 0.00 0.00 0.00 4.00
435 436 6.542005 TGAATGAATAAATACGATGCAGTGGT 59.458 34.615 0.00 0.00 0.00 4.16
436 437 6.942532 ATGAATAAATACGATGCAGTGGTT 57.057 33.333 0.00 0.00 0.00 3.67
437 438 6.358118 TGAATAAATACGATGCAGTGGTTC 57.642 37.500 0.00 0.00 0.00 3.62
438 439 6.112734 TGAATAAATACGATGCAGTGGTTCT 58.887 36.000 0.00 0.00 0.00 3.01
439 440 7.269316 TGAATAAATACGATGCAGTGGTTCTA 58.731 34.615 0.00 0.00 0.00 2.10
440 441 7.766738 TGAATAAATACGATGCAGTGGTTCTAA 59.233 33.333 0.00 0.00 0.00 2.10
441 442 8.500753 AATAAATACGATGCAGTGGTTCTAAA 57.499 30.769 0.00 0.00 0.00 1.85
442 443 6.811253 AAATACGATGCAGTGGTTCTAAAA 57.189 33.333 0.00 0.00 0.00 1.52
443 444 6.811253 AATACGATGCAGTGGTTCTAAAAA 57.189 33.333 0.00 0.00 0.00 1.94
466 467 3.629142 AAAGAACAATACTCCCTCCGG 57.371 47.619 0.00 0.00 0.00 5.14
467 468 2.249309 AGAACAATACTCCCTCCGGT 57.751 50.000 0.00 0.00 0.00 5.28
468 469 2.108970 AGAACAATACTCCCTCCGGTC 58.891 52.381 0.00 0.00 0.00 4.79
469 470 1.138464 GAACAATACTCCCTCCGGTCC 59.862 57.143 0.00 0.00 0.00 4.46
470 471 0.338814 ACAATACTCCCTCCGGTCCT 59.661 55.000 0.00 0.00 0.00 3.85
471 472 1.273666 ACAATACTCCCTCCGGTCCTT 60.274 52.381 0.00 0.00 0.00 3.36
472 473 1.838077 CAATACTCCCTCCGGTCCTTT 59.162 52.381 0.00 0.00 0.00 3.11
473 474 2.238898 CAATACTCCCTCCGGTCCTTTT 59.761 50.000 0.00 0.00 0.00 2.27
474 475 2.034436 TACTCCCTCCGGTCCTTTTT 57.966 50.000 0.00 0.00 0.00 1.94
475 476 2.034436 ACTCCCTCCGGTCCTTTTTA 57.966 50.000 0.00 0.00 0.00 1.52
476 477 1.907255 ACTCCCTCCGGTCCTTTTTAG 59.093 52.381 0.00 0.00 0.00 1.85
477 478 1.907255 CTCCCTCCGGTCCTTTTTAGT 59.093 52.381 0.00 0.00 0.00 2.24
478 479 2.305052 CTCCCTCCGGTCCTTTTTAGTT 59.695 50.000 0.00 0.00 0.00 2.24
479 480 2.303890 TCCCTCCGGTCCTTTTTAGTTC 59.696 50.000 0.00 0.00 0.00 3.01
480 481 2.344025 CCTCCGGTCCTTTTTAGTTCG 58.656 52.381 0.00 0.00 0.00 3.95
481 482 1.730612 CTCCGGTCCTTTTTAGTTCGC 59.269 52.381 0.00 0.00 0.00 4.70
482 483 1.070445 TCCGGTCCTTTTTAGTTCGCA 59.930 47.619 0.00 0.00 0.00 5.10
483 484 2.081462 CCGGTCCTTTTTAGTTCGCAT 58.919 47.619 0.00 0.00 0.00 4.73
484 485 3.055963 TCCGGTCCTTTTTAGTTCGCATA 60.056 43.478 0.00 0.00 0.00 3.14
485 486 3.875134 CCGGTCCTTTTTAGTTCGCATAT 59.125 43.478 0.00 0.00 0.00 1.78
486 487 5.051816 CCGGTCCTTTTTAGTTCGCATATA 58.948 41.667 0.00 0.00 0.00 0.86
487 488 5.524646 CCGGTCCTTTTTAGTTCGCATATAA 59.475 40.000 0.00 0.00 0.00 0.98
488 489 6.292703 CCGGTCCTTTTTAGTTCGCATATAAG 60.293 42.308 0.00 0.00 0.00 1.73
489 490 6.477688 CGGTCCTTTTTAGTTCGCATATAAGA 59.522 38.462 0.00 0.00 0.00 2.10
490 491 7.170998 CGGTCCTTTTTAGTTCGCATATAAGAT 59.829 37.037 0.00 0.00 0.00 2.40
491 492 8.837389 GGTCCTTTTTAGTTCGCATATAAGATT 58.163 33.333 0.00 0.00 0.00 2.40
501 502 9.601217 AGTTCGCATATAAGATTTGTCTAAAGT 57.399 29.630 0.00 0.00 0.00 2.66
502 503 9.851043 GTTCGCATATAAGATTTGTCTAAAGTC 57.149 33.333 0.00 0.00 0.00 3.01
503 504 9.594478 TTCGCATATAAGATTTGTCTAAAGTCA 57.406 29.630 0.00 0.00 0.00 3.41
504 505 9.594478 TCGCATATAAGATTTGTCTAAAGTCAA 57.406 29.630 0.00 0.00 0.00 3.18
505 506 9.855361 CGCATATAAGATTTGTCTAAAGTCAAG 57.145 33.333 0.00 0.00 0.00 3.02
512 513 8.545229 AGATTTGTCTAAAGTCAAGACTCATG 57.455 34.615 2.78 0.00 43.13 3.07
513 514 8.370940 AGATTTGTCTAAAGTCAAGACTCATGA 58.629 33.333 2.78 0.00 43.13 3.07
514 515 8.908786 ATTTGTCTAAAGTCAAGACTCATGAA 57.091 30.769 2.78 0.00 43.13 2.57
515 516 7.715265 TTGTCTAAAGTCAAGACTCATGAAC 57.285 36.000 2.78 0.00 43.13 3.18
516 517 7.055667 TGTCTAAAGTCAAGACTCATGAACT 57.944 36.000 2.78 0.00 43.13 3.01
517 518 7.500992 TGTCTAAAGTCAAGACTCATGAACTT 58.499 34.615 2.78 2.97 43.13 2.66
518 519 7.987458 TGTCTAAAGTCAAGACTCATGAACTTT 59.013 33.333 19.49 19.49 43.13 2.66
519 520 8.279103 GTCTAAAGTCAAGACTCATGAACTTTG 58.721 37.037 22.47 14.94 41.58 2.77
520 521 8.204160 TCTAAAGTCAAGACTCATGAACTTTGA 58.796 33.333 22.47 16.48 41.58 2.69
521 522 6.610741 AAGTCAAGACTCATGAACTTTGAC 57.389 37.500 24.34 24.34 41.58 3.18
522 523 5.059833 AGTCAAGACTCATGAACTTTGACC 58.940 41.667 26.19 16.44 36.92 4.02
523 524 4.816385 GTCAAGACTCATGAACTTTGACCA 59.184 41.667 22.74 3.23 0.00 4.02
524 525 5.296780 GTCAAGACTCATGAACTTTGACCAA 59.703 40.000 22.74 2.98 0.00 3.67
525 526 5.296780 TCAAGACTCATGAACTTTGACCAAC 59.703 40.000 10.78 0.00 0.00 3.77
526 527 5.041191 AGACTCATGAACTTTGACCAACT 57.959 39.130 0.00 0.00 0.00 3.16
527 528 5.440610 AGACTCATGAACTTTGACCAACTT 58.559 37.500 0.00 0.00 0.00 2.66
528 529 5.888161 AGACTCATGAACTTTGACCAACTTT 59.112 36.000 0.00 0.00 0.00 2.66
529 530 7.054124 AGACTCATGAACTTTGACCAACTTTA 58.946 34.615 0.00 0.00 0.00 1.85
530 531 7.721399 AGACTCATGAACTTTGACCAACTTTAT 59.279 33.333 0.00 0.00 0.00 1.40
531 532 8.918202 ACTCATGAACTTTGACCAACTTTATA 57.082 30.769 0.00 0.00 0.00 0.98
532 533 9.349713 ACTCATGAACTTTGACCAACTTTATAA 57.650 29.630 0.00 0.00 0.00 0.98
533 534 9.831737 CTCATGAACTTTGACCAACTTTATAAG 57.168 33.333 0.00 0.00 0.00 1.73
534 535 9.567776 TCATGAACTTTGACCAACTTTATAAGA 57.432 29.630 0.00 0.00 0.00 2.10
575 576 9.863845 TCACAACGTGAAATCAATATTAGTAGA 57.136 29.630 0.00 0.00 39.78 2.59
578 579 9.586150 CAACGTGAAATCAATATTAGTAGATGC 57.414 33.333 0.00 0.00 0.00 3.91
579 580 8.007821 ACGTGAAATCAATATTAGTAGATGCG 57.992 34.615 0.00 0.00 0.00 4.73
580 581 7.652105 ACGTGAAATCAATATTAGTAGATGCGT 59.348 33.333 0.00 0.00 0.00 5.24
581 582 8.156553 CGTGAAATCAATATTAGTAGATGCGTC 58.843 37.037 0.00 0.00 0.00 5.19
582 583 8.978539 GTGAAATCAATATTAGTAGATGCGTCA 58.021 33.333 8.99 0.00 0.00 4.35
583 584 9.710900 TGAAATCAATATTAGTAGATGCGTCAT 57.289 29.630 8.99 0.00 0.00 3.06
584 585 9.964253 GAAATCAATATTAGTAGATGCGTCATG 57.036 33.333 8.99 0.00 0.00 3.07
585 586 9.710900 AAATCAATATTAGTAGATGCGTCATGA 57.289 29.630 8.99 0.00 0.00 3.07
586 587 8.694975 ATCAATATTAGTAGATGCGTCATGAC 57.305 34.615 16.21 16.21 0.00 3.06
587 588 7.886338 TCAATATTAGTAGATGCGTCATGACT 58.114 34.615 22.95 10.51 0.00 3.41
588 589 8.360390 TCAATATTAGTAGATGCGTCATGACTT 58.640 33.333 22.95 8.27 0.00 3.01
589 590 9.626045 CAATATTAGTAGATGCGTCATGACTTA 57.374 33.333 22.95 12.20 0.00 2.24
593 594 8.942338 TTAGTAGATGCGTCATGACTTAAATT 57.058 30.769 22.95 7.42 0.00 1.82
594 595 7.849804 AGTAGATGCGTCATGACTTAAATTT 57.150 32.000 22.95 9.07 0.00 1.82
595 596 8.268850 AGTAGATGCGTCATGACTTAAATTTT 57.731 30.769 22.95 4.61 0.00 1.82
596 597 8.391106 AGTAGATGCGTCATGACTTAAATTTTC 58.609 33.333 22.95 8.71 0.00 2.29
597 598 7.144722 AGATGCGTCATGACTTAAATTTTCA 57.855 32.000 22.95 7.45 0.00 2.69
598 599 7.765307 AGATGCGTCATGACTTAAATTTTCAT 58.235 30.769 22.95 11.16 0.00 2.57
599 600 8.892723 AGATGCGTCATGACTTAAATTTTCATA 58.107 29.630 22.95 0.00 0.00 2.15
600 601 9.502145 GATGCGTCATGACTTAAATTTTCATAA 57.498 29.630 22.95 0.00 0.00 1.90
601 602 8.667987 TGCGTCATGACTTAAATTTTCATAAC 57.332 30.769 22.95 0.00 0.00 1.89
602 603 8.293157 TGCGTCATGACTTAAATTTTCATAACA 58.707 29.630 22.95 0.00 0.00 2.41
603 604 9.289303 GCGTCATGACTTAAATTTTCATAACAT 57.711 29.630 22.95 0.00 0.00 2.71
626 627 9.745018 ACATATAACTTTGGCATAATAGATGCT 57.255 29.630 9.24 0.00 44.02 3.79
692 693 8.654230 GACTTCAGTCAATTCTTATATGCAGA 57.346 34.615 1.86 0.00 44.18 4.26
693 694 8.659925 ACTTCAGTCAATTCTTATATGCAGAG 57.340 34.615 0.00 0.00 0.00 3.35
694 695 8.263640 ACTTCAGTCAATTCTTATATGCAGAGT 58.736 33.333 0.00 0.00 0.00 3.24
695 696 9.755804 CTTCAGTCAATTCTTATATGCAGAGTA 57.244 33.333 0.00 0.00 0.00 2.59
705 706 8.948631 TCTTATATGCAGAGTAAAAAGGACTG 57.051 34.615 0.00 0.00 0.00 3.51
706 707 7.987458 TCTTATATGCAGAGTAAAAAGGACTGG 59.013 37.037 0.00 0.00 0.00 4.00
707 708 4.640771 ATGCAGAGTAAAAAGGACTGGA 57.359 40.909 0.00 0.00 33.99 3.86
708 709 4.008074 TGCAGAGTAAAAAGGACTGGAG 57.992 45.455 0.00 0.00 0.00 3.86
709 710 3.244561 TGCAGAGTAAAAAGGACTGGAGG 60.245 47.826 0.00 0.00 0.00 4.30
710 711 3.870299 GCAGAGTAAAAAGGACTGGAGGG 60.870 52.174 0.00 0.00 0.00 4.30
711 712 3.583086 CAGAGTAAAAAGGACTGGAGGGA 59.417 47.826 0.00 0.00 0.00 4.20
712 713 3.841255 AGAGTAAAAAGGACTGGAGGGAG 59.159 47.826 0.00 0.00 0.00 4.30
769 770 6.365970 TTCCCTAAAGCAAAATTGGCAATA 57.634 33.333 14.05 0.00 0.00 1.90
805 806 6.446318 TGTGTTGCACATCCTATTTTCTTTC 58.554 36.000 0.00 0.00 39.62 2.62
806 807 5.863935 GTGTTGCACATCCTATTTTCTTTCC 59.136 40.000 0.00 0.00 34.08 3.13
807 808 4.963276 TGCACATCCTATTTTCTTTCCG 57.037 40.909 0.00 0.00 0.00 4.30
808 809 4.331968 TGCACATCCTATTTTCTTTCCGT 58.668 39.130 0.00 0.00 0.00 4.69
809 810 4.155826 TGCACATCCTATTTTCTTTCCGTG 59.844 41.667 0.00 0.00 0.00 4.94
810 811 4.156008 GCACATCCTATTTTCTTTCCGTGT 59.844 41.667 0.00 0.00 0.00 4.49
811 812 5.335661 GCACATCCTATTTTCTTTCCGTGTT 60.336 40.000 0.00 0.00 0.00 3.32
812 813 6.314784 CACATCCTATTTTCTTTCCGTGTTC 58.685 40.000 0.00 0.00 0.00 3.18
915 968 2.815211 GAGCGCGTGAGATTGCCA 60.815 61.111 8.43 0.00 0.00 4.92
1570 1639 2.430921 GCCTCCGATATCGCCGTG 60.431 66.667 19.78 6.19 38.18 4.94
1846 7063 2.376808 AGATGACTCCAGCAGTTTCG 57.623 50.000 0.00 0.00 34.41 3.46
1850 7067 1.412710 TGACTCCAGCAGTTTCGACTT 59.587 47.619 0.00 0.00 34.41 3.01
2164 7394 4.479786 AGGCAGCAAAAACCTTGTTAAA 57.520 36.364 0.00 0.00 0.00 1.52
2238 7470 9.509956 GGGTTTAAGTAAATAAAGGGCATTTTT 57.490 29.630 1.20 0.00 32.01 1.94
2474 7717 6.916360 AACTTAATCTTGGCTGAATTGGAA 57.084 33.333 0.00 0.00 0.00 3.53
2496 7740 1.312371 TTAGGCATTGGCGTCTTGGC 61.312 55.000 8.63 8.63 42.47 4.52
2592 7885 0.537188 AGCAGGTCCTCAATGTACCG 59.463 55.000 0.00 0.00 38.37 4.02
2593 7886 0.535335 GCAGGTCCTCAATGTACCGA 59.465 55.000 0.00 0.00 38.37 4.69
2594 7887 1.739371 GCAGGTCCTCAATGTACCGAC 60.739 57.143 0.00 0.00 38.37 4.79
2595 7888 1.825474 CAGGTCCTCAATGTACCGACT 59.175 52.381 0.00 0.00 38.37 4.18
2596 7889 3.021695 CAGGTCCTCAATGTACCGACTA 58.978 50.000 0.00 0.00 38.37 2.59
2597 7890 3.637229 CAGGTCCTCAATGTACCGACTAT 59.363 47.826 0.00 0.00 38.37 2.12
2598 7891 3.890147 AGGTCCTCAATGTACCGACTATC 59.110 47.826 0.00 0.00 38.37 2.08
2599 7892 3.635373 GGTCCTCAATGTACCGACTATCA 59.365 47.826 0.00 0.00 0.00 2.15
2600 7893 4.098960 GGTCCTCAATGTACCGACTATCAA 59.901 45.833 0.00 0.00 0.00 2.57
2601 7894 5.282510 GTCCTCAATGTACCGACTATCAAG 58.717 45.833 0.00 0.00 0.00 3.02
2602 7895 4.954202 TCCTCAATGTACCGACTATCAAGT 59.046 41.667 0.00 0.00 39.21 3.16
2736 8057 7.686438 TGTTTGTTGTATGCATCTATGACTT 57.314 32.000 0.19 0.00 0.00 3.01
2737 8058 7.751732 TGTTTGTTGTATGCATCTATGACTTC 58.248 34.615 0.19 0.00 0.00 3.01
2738 8059 7.607607 TGTTTGTTGTATGCATCTATGACTTCT 59.392 33.333 0.19 0.00 0.00 2.85
2740 8061 9.665719 TTTGTTGTATGCATCTATGACTTCTTA 57.334 29.630 0.19 0.00 0.00 2.10
2742 8063 9.665719 TGTTGTATGCATCTATGACTTCTTAAA 57.334 29.630 0.19 0.00 0.00 1.52
2749 8070 9.399797 TGCATCTATGACTTCTTAAATCATTGT 57.600 29.630 0.00 0.00 34.86 2.71
2750 8071 9.661187 GCATCTATGACTTCTTAAATCATTGTG 57.339 33.333 0.00 0.00 34.86 3.33
2752 8073 9.911788 ATCTATGACTTCTTAAATCATTGTGGT 57.088 29.630 0.00 0.00 34.86 4.16
2753 8074 9.166173 TCTATGACTTCTTAAATCATTGTGGTG 57.834 33.333 0.00 0.00 34.86 4.17
2761 8082 6.818644 TCTTAAATCATTGTGGTGCTCTAGTC 59.181 38.462 0.00 0.00 0.00 2.59
2762 8083 4.558226 AATCATTGTGGTGCTCTAGTCA 57.442 40.909 0.00 0.00 0.00 3.41
2763 8084 3.599730 TCATTGTGGTGCTCTAGTCAG 57.400 47.619 0.00 0.00 0.00 3.51
2764 8085 3.165071 TCATTGTGGTGCTCTAGTCAGA 58.835 45.455 0.00 0.00 0.00 3.27
2765 8086 3.578282 TCATTGTGGTGCTCTAGTCAGAA 59.422 43.478 0.00 0.00 0.00 3.02
2767 8088 4.415881 TTGTGGTGCTCTAGTCAGAAAA 57.584 40.909 0.00 0.00 0.00 2.29
2768 8089 3.995199 TGTGGTGCTCTAGTCAGAAAAG 58.005 45.455 0.00 0.00 0.00 2.27
2769 8090 3.388024 TGTGGTGCTCTAGTCAGAAAAGT 59.612 43.478 0.00 0.00 0.00 2.66
2770 8091 3.743396 GTGGTGCTCTAGTCAGAAAAGTG 59.257 47.826 0.00 0.00 0.00 3.16
2771 8092 3.388024 TGGTGCTCTAGTCAGAAAAGTGT 59.612 43.478 0.00 0.00 0.00 3.55
2772 8093 3.743396 GGTGCTCTAGTCAGAAAAGTGTG 59.257 47.826 0.00 0.00 0.00 3.82
2773 8094 3.185391 GTGCTCTAGTCAGAAAAGTGTGC 59.815 47.826 0.00 0.00 0.00 4.57
2774 8095 3.181466 TGCTCTAGTCAGAAAAGTGTGCA 60.181 43.478 0.00 0.00 0.00 4.57
2775 8096 3.431572 GCTCTAGTCAGAAAAGTGTGCAG 59.568 47.826 0.00 0.00 0.00 4.41
2776 8097 4.626042 CTCTAGTCAGAAAAGTGTGCAGT 58.374 43.478 0.00 0.00 0.00 4.40
2778 8099 4.811024 TCTAGTCAGAAAAGTGTGCAGTTG 59.189 41.667 0.00 0.00 0.00 3.16
2779 8100 3.347216 AGTCAGAAAAGTGTGCAGTTGT 58.653 40.909 0.00 0.00 0.00 3.32
2780 8101 3.127548 AGTCAGAAAAGTGTGCAGTTGTG 59.872 43.478 0.00 0.00 0.00 3.33
2791 8112 2.464682 CAGTTGTGCTCTGCTAGGC 58.535 57.895 0.00 0.00 0.00 3.93
2793 8114 0.397941 AGTTGTGCTCTGCTAGGCAA 59.602 50.000 0.00 0.00 38.41 4.52
2794 8115 0.801251 GTTGTGCTCTGCTAGGCAAG 59.199 55.000 0.00 0.00 38.41 4.01
2795 8116 0.397941 TTGTGCTCTGCTAGGCAAGT 59.602 50.000 0.00 0.00 38.41 3.16
2796 8117 0.036952 TGTGCTCTGCTAGGCAAGTC 60.037 55.000 0.00 0.00 38.41 3.01
2797 8118 0.742635 GTGCTCTGCTAGGCAAGTCC 60.743 60.000 0.00 0.00 38.41 3.85
2798 8119 1.194121 TGCTCTGCTAGGCAAGTCCA 61.194 55.000 0.00 0.00 38.41 4.02
2799 8120 0.036010 GCTCTGCTAGGCAAGTCCAA 60.036 55.000 0.00 0.00 38.41 3.53
2801 8122 0.037326 TCTGCTAGGCAAGTCCAACG 60.037 55.000 0.00 0.00 38.41 4.10
2802 8123 1.639298 CTGCTAGGCAAGTCCAACGC 61.639 60.000 0.00 0.00 38.41 4.84
2803 8124 1.671054 GCTAGGCAAGTCCAACGCA 60.671 57.895 0.00 0.00 37.29 5.24
2804 8125 1.639298 GCTAGGCAAGTCCAACGCAG 61.639 60.000 0.00 0.00 37.29 5.18
2805 8126 0.037326 CTAGGCAAGTCCAACGCAGA 60.037 55.000 0.00 0.00 37.29 4.26
2806 8127 0.037326 TAGGCAAGTCCAACGCAGAG 60.037 55.000 0.00 0.00 37.29 3.35
2836 9347 0.817634 TGCTGGAAGTGAAACCACCG 60.818 55.000 0.00 0.00 37.80 4.94
2967 9478 1.144969 GACACCAAATCGAAGCGACA 58.855 50.000 0.00 0.00 39.18 4.35
3199 9791 9.887629 CTATCATCAGCAAGATCCTATGTAAAT 57.112 33.333 0.00 0.00 33.72 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.397254 CCACTCCAGTCCCCGTATCT 60.397 60.000 0.00 0.00 0.00 1.98
2 3 0.976073 CACCACTCCAGTCCCCGTAT 60.976 60.000 0.00 0.00 0.00 3.06
3 4 1.608336 CACCACTCCAGTCCCCGTA 60.608 63.158 0.00 0.00 0.00 4.02
6 7 4.035102 GCCACCACTCCAGTCCCC 62.035 72.222 0.00 0.00 0.00 4.81
10 11 3.314331 CCGAGCCACCACTCCAGT 61.314 66.667 0.00 0.00 32.79 4.00
12 13 3.924013 ATCCCGAGCCACCACTCCA 62.924 63.158 0.00 0.00 32.79 3.86
13 14 3.083997 ATCCCGAGCCACCACTCC 61.084 66.667 0.00 0.00 32.79 3.85
14 15 1.690219 ATCATCCCGAGCCACCACTC 61.690 60.000 0.00 0.00 0.00 3.51
16 17 1.227674 GATCATCCCGAGCCACCAC 60.228 63.158 0.00 0.00 0.00 4.16
18 19 2.029666 CGATCATCCCGAGCCACC 59.970 66.667 0.00 0.00 0.00 4.61
19 20 2.029666 CCGATCATCCCGAGCCAC 59.970 66.667 0.00 0.00 0.00 5.01
20 21 3.233980 CCCGATCATCCCGAGCCA 61.234 66.667 0.00 0.00 0.00 4.75
22 23 4.008933 CCCCCGATCATCCCGAGC 62.009 72.222 0.00 0.00 0.00 5.03
24 25 2.523412 GACCCCCGATCATCCCGA 60.523 66.667 0.00 0.00 0.00 5.14
25 26 3.626924 GGACCCCCGATCATCCCG 61.627 72.222 0.00 0.00 0.00 5.14
27 28 1.657804 ATAAGGACCCCCGATCATCC 58.342 55.000 0.00 0.00 37.58 3.51
28 29 3.412386 CAAATAAGGACCCCCGATCATC 58.588 50.000 0.00 0.00 37.58 2.92
30 31 1.133915 GCAAATAAGGACCCCCGATCA 60.134 52.381 0.00 0.00 37.58 2.92
31 32 1.605753 GCAAATAAGGACCCCCGATC 58.394 55.000 0.00 0.00 37.58 3.69
32 33 0.179029 CGCAAATAAGGACCCCCGAT 60.179 55.000 0.00 0.00 37.58 4.18
33 34 1.222387 CGCAAATAAGGACCCCCGA 59.778 57.895 0.00 0.00 37.58 5.14
34 35 0.814010 CTCGCAAATAAGGACCCCCG 60.814 60.000 0.00 0.00 37.58 5.73
35 36 0.544697 TCTCGCAAATAAGGACCCCC 59.455 55.000 0.00 0.00 0.00 5.40
36 37 2.222027 CATCTCGCAAATAAGGACCCC 58.778 52.381 0.00 0.00 0.00 4.95
37 38 1.604278 GCATCTCGCAAATAAGGACCC 59.396 52.381 0.00 0.00 41.79 4.46
53 54 5.586243 TCCTTTGCTGTGTATTTAGAGCATC 59.414 40.000 0.00 0.00 44.95 3.91
54 55 5.500234 TCCTTTGCTGTGTATTTAGAGCAT 58.500 37.500 0.00 0.00 44.95 3.79
55 56 4.905429 TCCTTTGCTGTGTATTTAGAGCA 58.095 39.130 0.00 0.00 44.10 4.26
56 57 4.333926 CCTCCTTTGCTGTGTATTTAGAGC 59.666 45.833 0.00 0.00 37.47 4.09
57 58 5.734720 TCCTCCTTTGCTGTGTATTTAGAG 58.265 41.667 0.00 0.00 0.00 2.43
58 59 5.755409 TCCTCCTTTGCTGTGTATTTAGA 57.245 39.130 0.00 0.00 0.00 2.10
59 60 5.529060 GGATCCTCCTTTGCTGTGTATTTAG 59.471 44.000 3.84 0.00 32.53 1.85
60 61 5.191722 AGGATCCTCCTTTGCTGTGTATTTA 59.808 40.000 9.02 0.00 46.91 1.40
61 62 4.018050 AGGATCCTCCTTTGCTGTGTATTT 60.018 41.667 9.02 0.00 46.91 1.40
62 63 3.525199 AGGATCCTCCTTTGCTGTGTATT 59.475 43.478 9.02 0.00 46.91 1.89
63 64 3.118531 AGGATCCTCCTTTGCTGTGTAT 58.881 45.455 9.02 0.00 46.91 2.29
64 65 2.551270 AGGATCCTCCTTTGCTGTGTA 58.449 47.619 9.02 0.00 46.91 2.90
65 66 1.366319 AGGATCCTCCTTTGCTGTGT 58.634 50.000 9.02 0.00 46.91 3.72
75 76 4.618920 TTCGGCTATAAAAGGATCCTCC 57.381 45.455 16.52 9.08 36.58 4.30
76 77 5.644206 GGATTTCGGCTATAAAAGGATCCTC 59.356 44.000 16.52 0.00 0.00 3.71
77 78 5.310857 AGGATTTCGGCTATAAAAGGATCCT 59.689 40.000 9.02 9.02 36.83 3.24
78 79 5.561679 AGGATTTCGGCTATAAAAGGATCC 58.438 41.667 2.48 2.48 0.00 3.36
80 81 6.013293 AGCTAGGATTTCGGCTATAAAAGGAT 60.013 38.462 0.00 0.00 32.94 3.24
81 82 5.307196 AGCTAGGATTTCGGCTATAAAAGGA 59.693 40.000 0.00 0.00 32.94 3.36
82 83 5.552178 AGCTAGGATTTCGGCTATAAAAGG 58.448 41.667 0.00 0.00 32.94 3.11
83 84 6.566753 GCAAGCTAGGATTTCGGCTATAAAAG 60.567 42.308 0.00 0.00 34.40 2.27
84 85 5.238650 GCAAGCTAGGATTTCGGCTATAAAA 59.761 40.000 0.00 0.00 34.40 1.52
85 86 4.755123 GCAAGCTAGGATTTCGGCTATAAA 59.245 41.667 0.00 0.00 34.40 1.40
87 88 3.306780 GGCAAGCTAGGATTTCGGCTATA 60.307 47.826 0.00 0.00 34.40 1.31
89 90 1.202651 GGCAAGCTAGGATTTCGGCTA 60.203 52.381 0.00 0.00 34.40 3.93
91 92 1.776034 CGGCAAGCTAGGATTTCGGC 61.776 60.000 0.00 0.00 0.00 5.54
92 93 1.160329 CCGGCAAGCTAGGATTTCGG 61.160 60.000 0.00 0.00 0.00 4.30
94 95 0.180406 TCCCGGCAAGCTAGGATTTC 59.820 55.000 0.00 0.00 0.00 2.17
95 96 0.846693 ATCCCGGCAAGCTAGGATTT 59.153 50.000 0.00 0.00 35.55 2.17
96 97 0.109342 CATCCCGGCAAGCTAGGATT 59.891 55.000 11.86 0.00 36.99 3.01
97 98 1.757306 CATCCCGGCAAGCTAGGAT 59.243 57.895 0.00 9.58 39.76 3.24
98 99 3.106986 GCATCCCGGCAAGCTAGGA 62.107 63.158 0.00 7.23 0.00 2.94
99 100 2.592861 GCATCCCGGCAAGCTAGG 60.593 66.667 0.00 0.00 0.00 3.02
100 101 1.890979 CTGCATCCCGGCAAGCTAG 60.891 63.158 0.00 0.00 44.40 3.42
103 104 3.818787 CACTGCATCCCGGCAAGC 61.819 66.667 0.00 0.00 44.40 4.01
104 105 1.651240 CTTCACTGCATCCCGGCAAG 61.651 60.000 0.00 0.00 44.40 4.01
106 107 2.046023 CTTCACTGCATCCCGGCA 60.046 61.111 0.00 0.00 42.53 5.69
107 108 2.593468 TAGCTTCACTGCATCCCGGC 62.593 60.000 0.00 0.00 34.99 6.13
108 109 0.531532 CTAGCTTCACTGCATCCCGG 60.532 60.000 0.00 0.00 34.99 5.73
109 110 1.156645 GCTAGCTTCACTGCATCCCG 61.157 60.000 7.70 0.00 34.99 5.14
110 111 0.179936 AGCTAGCTTCACTGCATCCC 59.820 55.000 12.68 0.00 34.99 3.85
111 112 2.898729 TAGCTAGCTTCACTGCATCC 57.101 50.000 24.88 0.00 34.99 3.51
112 113 3.065655 CCATAGCTAGCTTCACTGCATC 58.934 50.000 24.88 0.00 34.99 3.91
113 114 2.702478 TCCATAGCTAGCTTCACTGCAT 59.298 45.455 24.88 5.20 34.99 3.96
114 115 2.110578 TCCATAGCTAGCTTCACTGCA 58.889 47.619 24.88 2.48 34.99 4.41
115 116 2.898729 TCCATAGCTAGCTTCACTGC 57.101 50.000 24.88 0.00 0.00 4.40
116 117 5.973899 TCTATCCATAGCTAGCTTCACTG 57.026 43.478 24.88 14.73 0.00 3.66
135 136 9.243105 TCCACGATCACATGAGATAATAATCTA 57.757 33.333 5.56 0.00 42.73 1.98
136 137 8.127150 TCCACGATCACATGAGATAATAATCT 57.873 34.615 5.56 0.00 45.46 2.40
137 138 8.246871 TCTCCACGATCACATGAGATAATAATC 58.753 37.037 5.56 0.00 0.00 1.75
139 140 7.371159 GTCTCCACGATCACATGAGATAATAA 58.629 38.462 5.56 0.00 34.83 1.40
140 141 6.914259 GTCTCCACGATCACATGAGATAATA 58.086 40.000 5.56 0.00 34.83 0.98
142 143 5.188327 GTCTCCACGATCACATGAGATAA 57.812 43.478 5.56 0.00 34.83 1.75
144 145 3.724508 GTCTCCACGATCACATGAGAT 57.275 47.619 5.23 5.23 34.83 2.75
156 157 1.516386 CCGACAATCCGTCTCCACG 60.516 63.158 0.00 0.00 46.29 4.94
157 158 0.458025 GACCGACAATCCGTCTCCAC 60.458 60.000 0.00 0.00 42.98 4.02
158 159 1.601419 GGACCGACAATCCGTCTCCA 61.601 60.000 0.00 0.00 42.98 3.86
160 161 0.460311 ATGGACCGACAATCCGTCTC 59.540 55.000 0.00 0.00 42.98 3.36
162 163 1.734163 AAATGGACCGACAATCCGTC 58.266 50.000 0.00 0.00 39.30 4.79
163 164 3.553828 ATAAATGGACCGACAATCCGT 57.446 42.857 0.00 0.00 39.30 4.69
164 165 4.628074 AGTATAAATGGACCGACAATCCG 58.372 43.478 0.00 0.00 39.30 4.18
165 166 7.117812 CACATAGTATAAATGGACCGACAATCC 59.882 40.741 0.00 0.00 36.70 3.01
166 167 7.117812 CCACATAGTATAAATGGACCGACAATC 59.882 40.741 2.40 0.00 32.84 2.67
167 168 6.934645 CCACATAGTATAAATGGACCGACAAT 59.065 38.462 2.40 0.00 32.84 2.71
168 169 6.098552 TCCACATAGTATAAATGGACCGACAA 59.901 38.462 6.05 0.00 34.73 3.18
171 172 6.092955 GTCCACATAGTATAAATGGACCGA 57.907 41.667 20.25 0.00 46.23 4.69
175 176 7.567250 TCCTTGAGTCCACATAGTATAAATGGA 59.433 37.037 6.05 6.05 36.60 3.41
179 180 8.642432 CATCTCCTTGAGTCCACATAGTATAAA 58.358 37.037 0.00 0.00 0.00 1.40
182 183 6.266558 GTCATCTCCTTGAGTCCACATAGTAT 59.733 42.308 0.00 0.00 0.00 2.12
183 184 5.594725 GTCATCTCCTTGAGTCCACATAGTA 59.405 44.000 0.00 0.00 0.00 1.82
184 185 4.404073 GTCATCTCCTTGAGTCCACATAGT 59.596 45.833 0.00 0.00 0.00 2.12
185 186 4.403752 TGTCATCTCCTTGAGTCCACATAG 59.596 45.833 0.00 0.00 0.00 2.23
187 188 3.176411 TGTCATCTCCTTGAGTCCACAT 58.824 45.455 0.00 0.00 0.00 3.21
188 189 2.564504 CTGTCATCTCCTTGAGTCCACA 59.435 50.000 0.00 0.00 0.00 4.17
189 190 2.093764 CCTGTCATCTCCTTGAGTCCAC 60.094 54.545 0.00 0.00 0.00 4.02
190 191 2.182827 CCTGTCATCTCCTTGAGTCCA 58.817 52.381 0.00 0.00 0.00 4.02
191 192 2.167487 GACCTGTCATCTCCTTGAGTCC 59.833 54.545 0.00 0.00 0.00 3.85
192 193 3.096092 AGACCTGTCATCTCCTTGAGTC 58.904 50.000 0.00 0.00 0.00 3.36
193 194 2.830923 CAGACCTGTCATCTCCTTGAGT 59.169 50.000 0.00 0.00 0.00 3.41
194 195 2.830923 ACAGACCTGTCATCTCCTTGAG 59.169 50.000 0.00 0.00 40.24 3.02
195 196 2.894731 ACAGACCTGTCATCTCCTTGA 58.105 47.619 0.00 0.00 40.24 3.02
196 197 3.131933 CCTACAGACCTGTCATCTCCTTG 59.868 52.174 5.87 0.00 43.74 3.61
197 198 3.011821 TCCTACAGACCTGTCATCTCCTT 59.988 47.826 5.87 0.00 43.74 3.36
198 199 2.583101 TCCTACAGACCTGTCATCTCCT 59.417 50.000 5.87 0.00 43.74 3.69
199 200 2.955660 CTCCTACAGACCTGTCATCTCC 59.044 54.545 5.87 0.00 43.74 3.71
200 201 2.955660 CCTCCTACAGACCTGTCATCTC 59.044 54.545 5.87 0.00 43.74 2.75
201 202 2.952702 GCCTCCTACAGACCTGTCATCT 60.953 54.545 5.87 0.00 43.74 2.90
202 203 1.410882 GCCTCCTACAGACCTGTCATC 59.589 57.143 5.87 0.00 43.74 2.92
203 204 1.490574 GCCTCCTACAGACCTGTCAT 58.509 55.000 5.87 0.00 43.74 3.06
204 205 0.614979 GGCCTCCTACAGACCTGTCA 60.615 60.000 5.87 0.00 43.74 3.58
205 206 0.614979 TGGCCTCCTACAGACCTGTC 60.615 60.000 3.32 0.00 43.74 3.51
206 207 0.178903 TTGGCCTCCTACAGACCTGT 60.179 55.000 3.32 7.86 46.87 4.00
207 208 0.539051 CTTGGCCTCCTACAGACCTG 59.461 60.000 3.32 0.00 0.00 4.00
208 209 0.117340 ACTTGGCCTCCTACAGACCT 59.883 55.000 3.32 0.00 0.00 3.85
209 210 0.984995 AACTTGGCCTCCTACAGACC 59.015 55.000 3.32 0.00 0.00 3.85
210 211 2.861147 AAACTTGGCCTCCTACAGAC 57.139 50.000 3.32 0.00 0.00 3.51
211 212 3.876309 AAAAACTTGGCCTCCTACAGA 57.124 42.857 3.32 0.00 0.00 3.41
214 215 6.002082 TCTTTCTAAAAACTTGGCCTCCTAC 58.998 40.000 3.32 0.00 0.00 3.18
216 217 5.061721 TCTTTCTAAAAACTTGGCCTCCT 57.938 39.130 3.32 0.00 0.00 3.69
217 218 5.714047 CATCTTTCTAAAAACTTGGCCTCC 58.286 41.667 3.32 0.00 0.00 4.30
218 219 5.164233 GCATCTTTCTAAAAACTTGGCCTC 58.836 41.667 3.32 0.00 0.00 4.70
220 221 3.920412 CGCATCTTTCTAAAAACTTGGCC 59.080 43.478 0.00 0.00 0.00 5.36
225 226 9.654663 AGATAAGTACGCATCTTTCTAAAAACT 57.345 29.630 6.47 0.00 0.00 2.66
226 227 9.903185 GAGATAAGTACGCATCTTTCTAAAAAC 57.097 33.333 11.94 0.00 31.63 2.43
228 229 9.517609 GAGAGATAAGTACGCATCTTTCTAAAA 57.482 33.333 16.44 0.00 32.41 1.52
229 230 8.683615 TGAGAGATAAGTACGCATCTTTCTAAA 58.316 33.333 20.73 7.62 34.87 1.85
231 232 7.803279 TGAGAGATAAGTACGCATCTTTCTA 57.197 36.000 20.73 11.35 34.87 2.10
232 233 6.701145 TGAGAGATAAGTACGCATCTTTCT 57.299 37.500 20.73 12.68 34.87 2.52
234 235 6.266558 AGGATGAGAGATAAGTACGCATCTTT 59.733 38.462 11.94 7.74 39.48 2.52
237 238 5.637006 AGGATGAGAGATAAGTACGCATC 57.363 43.478 0.00 0.00 39.07 3.91
238 239 6.040955 TGAAAGGATGAGAGATAAGTACGCAT 59.959 38.462 0.00 0.00 0.00 4.73
239 240 5.359860 TGAAAGGATGAGAGATAAGTACGCA 59.640 40.000 0.00 0.00 0.00 5.24
240 241 5.833082 TGAAAGGATGAGAGATAAGTACGC 58.167 41.667 0.00 0.00 0.00 4.42
258 259 8.579863 ACAAAAACTAGATCAAATCCCTGAAAG 58.420 33.333 0.00 0.00 0.00 2.62
261 262 6.071952 GCACAAAAACTAGATCAAATCCCTGA 60.072 38.462 0.00 0.00 0.00 3.86
262 263 6.095377 GCACAAAAACTAGATCAAATCCCTG 58.905 40.000 0.00 0.00 0.00 4.45
263 264 5.774690 TGCACAAAAACTAGATCAAATCCCT 59.225 36.000 0.00 0.00 0.00 4.20
264 265 6.024552 TGCACAAAAACTAGATCAAATCCC 57.975 37.500 0.00 0.00 0.00 3.85
265 266 7.063780 CCAATGCACAAAAACTAGATCAAATCC 59.936 37.037 0.00 0.00 0.00 3.01
266 267 7.063780 CCCAATGCACAAAAACTAGATCAAATC 59.936 37.037 0.00 0.00 0.00 2.17
268 269 6.041409 TCCCAATGCACAAAAACTAGATCAAA 59.959 34.615 0.00 0.00 0.00 2.69
269 270 5.538053 TCCCAATGCACAAAAACTAGATCAA 59.462 36.000 0.00 0.00 0.00 2.57
271 272 5.393461 CCTCCCAATGCACAAAAACTAGATC 60.393 44.000 0.00 0.00 0.00 2.75
272 273 4.463891 CCTCCCAATGCACAAAAACTAGAT 59.536 41.667 0.00 0.00 0.00 1.98
273 274 3.826157 CCTCCCAATGCACAAAAACTAGA 59.174 43.478 0.00 0.00 0.00 2.43
274 275 3.614870 GCCTCCCAATGCACAAAAACTAG 60.615 47.826 0.00 0.00 0.00 2.57
275 276 2.298729 GCCTCCCAATGCACAAAAACTA 59.701 45.455 0.00 0.00 0.00 2.24
278 279 0.396060 GGCCTCCCAATGCACAAAAA 59.604 50.000 0.00 0.00 0.00 1.94
279 280 0.762082 TGGCCTCCCAATGCACAAAA 60.762 50.000 3.32 0.00 38.46 2.44
280 281 0.762082 TTGGCCTCCCAATGCACAAA 60.762 50.000 3.32 0.00 46.01 2.83
281 282 1.152376 TTGGCCTCCCAATGCACAA 60.152 52.632 3.32 0.00 46.01 3.33
282 283 2.525075 TTGGCCTCCCAATGCACA 59.475 55.556 3.32 0.00 46.01 4.57
290 291 2.352805 CCACAGAGTTGGCCTCCC 59.647 66.667 3.32 0.00 41.47 4.30
296 297 0.179020 TTGGTGAGCCACAGAGTTGG 60.179 55.000 7.49 0.00 46.01 3.77
297 298 1.538512 CATTGGTGAGCCACAGAGTTG 59.461 52.381 7.49 0.00 46.01 3.16
298 299 1.143684 ACATTGGTGAGCCACAGAGTT 59.856 47.619 7.49 0.00 46.01 3.01
299 300 0.767375 ACATTGGTGAGCCACAGAGT 59.233 50.000 7.49 0.00 46.01 3.24
300 301 3.639099 ACATTGGTGAGCCACAGAG 57.361 52.632 7.49 0.00 46.01 3.35
310 311 4.699621 GCGAATGCCTAGCACATTGGTG 62.700 54.545 12.43 0.00 43.04 4.17
311 312 1.382522 CGAATGCCTAGCACATTGGT 58.617 50.000 12.43 0.00 43.04 3.67
312 313 0.029834 GCGAATGCCTAGCACATTGG 59.970 55.000 12.43 12.08 43.04 3.16
315 316 0.467384 AGAGCGAATGCCTAGCACAT 59.533 50.000 0.00 0.00 43.04 3.21
317 318 0.103937 AGAGAGCGAATGCCTAGCAC 59.896 55.000 0.00 0.00 43.04 4.40
318 319 0.826715 AAGAGAGCGAATGCCTAGCA 59.173 50.000 0.00 0.00 44.31 3.49
319 320 1.946745 AAAGAGAGCGAATGCCTAGC 58.053 50.000 0.00 0.00 44.31 3.42
322 323 2.028112 TGTGTAAAGAGAGCGAATGCCT 60.028 45.455 0.00 0.00 44.31 4.75
323 324 2.346803 TGTGTAAAGAGAGCGAATGCC 58.653 47.619 0.00 0.00 44.31 4.40
324 325 3.433615 AGTTGTGTAAAGAGAGCGAATGC 59.566 43.478 0.00 0.00 43.24 3.56
325 326 4.926238 AGAGTTGTGTAAAGAGAGCGAATG 59.074 41.667 0.00 0.00 0.00 2.67
326 327 5.140747 AGAGTTGTGTAAAGAGAGCGAAT 57.859 39.130 0.00 0.00 0.00 3.34
327 328 4.585955 AGAGTTGTGTAAAGAGAGCGAA 57.414 40.909 0.00 0.00 0.00 4.70
328 329 4.202121 ACAAGAGTTGTGTAAAGAGAGCGA 60.202 41.667 0.00 0.00 43.48 4.93
329 330 4.051922 ACAAGAGTTGTGTAAAGAGAGCG 58.948 43.478 0.00 0.00 43.48 5.03
330 331 7.659652 AATACAAGAGTTGTGTAAAGAGAGC 57.340 36.000 2.50 0.00 45.03 4.09
333 334 9.653287 TCCATAATACAAGAGTTGTGTAAAGAG 57.347 33.333 2.50 0.00 45.03 2.85
334 335 9.431887 GTCCATAATACAAGAGTTGTGTAAAGA 57.568 33.333 2.50 0.00 45.03 2.52
335 336 8.380644 CGTCCATAATACAAGAGTTGTGTAAAG 58.619 37.037 2.50 0.00 45.03 1.85
336 337 7.874016 ACGTCCATAATACAAGAGTTGTGTAAA 59.126 33.333 2.50 0.00 45.03 2.01
337 338 7.380536 ACGTCCATAATACAAGAGTTGTGTAA 58.619 34.615 2.50 0.00 45.03 2.41
338 339 6.927416 ACGTCCATAATACAAGAGTTGTGTA 58.073 36.000 2.50 0.00 45.03 2.90
340 341 7.821595 TTACGTCCATAATACAAGAGTTGTG 57.178 36.000 0.00 0.00 45.03 3.33
342 343 8.073355 GGATTACGTCCATAATACAAGAGTTG 57.927 38.462 0.00 0.00 46.96 3.16
358 359 4.402056 TCAGGAAATCAGGGATTACGTC 57.598 45.455 0.00 0.00 31.46 4.34
359 360 5.104527 TCAATCAGGAAATCAGGGATTACGT 60.105 40.000 0.00 0.00 31.46 3.57
361 362 5.240403 GCTCAATCAGGAAATCAGGGATTAC 59.760 44.000 0.00 0.00 31.46 1.89
362 363 5.103982 TGCTCAATCAGGAAATCAGGGATTA 60.104 40.000 0.00 0.00 31.46 1.75
363 364 4.213513 GCTCAATCAGGAAATCAGGGATT 58.786 43.478 0.00 0.00 33.25 3.01
366 367 3.008835 TGCTCAATCAGGAAATCAGGG 57.991 47.619 0.00 0.00 0.00 4.45
367 368 3.952323 ACATGCTCAATCAGGAAATCAGG 59.048 43.478 0.00 0.00 0.00 3.86
368 369 5.124936 TGAACATGCTCAATCAGGAAATCAG 59.875 40.000 0.00 0.00 0.00 2.90
370 371 5.571784 TGAACATGCTCAATCAGGAAATC 57.428 39.130 0.00 0.00 0.00 2.17
371 372 5.988310 TTGAACATGCTCAATCAGGAAAT 57.012 34.783 7.45 0.00 30.31 2.17
372 373 5.988310 ATTGAACATGCTCAATCAGGAAA 57.012 34.783 16.79 0.00 41.21 3.13
379 380 6.120220 TCATCTCTGATTGAACATGCTCAAT 58.880 36.000 21.35 21.35 46.38 2.57
380 381 5.493809 TCATCTCTGATTGAACATGCTCAA 58.506 37.500 13.61 13.61 39.56 3.02
383 384 5.064558 GGATCATCTCTGATTGAACATGCT 58.935 41.667 0.00 0.00 42.27 3.79
384 385 4.820173 TGGATCATCTCTGATTGAACATGC 59.180 41.667 0.00 0.00 42.27 4.06
385 386 6.056236 AGTGGATCATCTCTGATTGAACATG 58.944 40.000 0.00 0.00 42.27 3.21
386 387 6.249911 AGTGGATCATCTCTGATTGAACAT 57.750 37.500 0.00 0.00 42.27 2.71
387 388 5.688814 AGTGGATCATCTCTGATTGAACA 57.311 39.130 0.00 0.00 42.27 3.18
388 389 6.111382 TCAAGTGGATCATCTCTGATTGAAC 58.889 40.000 0.00 0.00 42.27 3.18
389 390 6.303903 TCAAGTGGATCATCTCTGATTGAA 57.696 37.500 0.00 0.00 42.27 2.69
390 391 5.945144 TCAAGTGGATCATCTCTGATTGA 57.055 39.130 0.00 0.00 42.27 2.57
391 392 6.766467 TCATTCAAGTGGATCATCTCTGATTG 59.234 38.462 0.00 6.24 42.27 2.67
393 394 6.496144 TCATTCAAGTGGATCATCTCTGAT 57.504 37.500 0.00 0.00 44.93 2.90
394 395 5.945144 TCATTCAAGTGGATCATCTCTGA 57.055 39.130 0.00 0.00 35.41 3.27
395 396 8.672823 TTATTCATTCAAGTGGATCATCTCTG 57.327 34.615 0.00 0.00 0.00 3.35
399 400 9.817365 CGTATTTATTCATTCAAGTGGATCATC 57.183 33.333 0.00 0.00 0.00 2.92
400 401 9.559732 TCGTATTTATTCATTCAAGTGGATCAT 57.440 29.630 0.00 0.00 0.00 2.45
401 402 8.956533 TCGTATTTATTCATTCAAGTGGATCA 57.043 30.769 0.00 0.00 0.00 2.92
403 404 8.292448 GCATCGTATTTATTCATTCAAGTGGAT 58.708 33.333 0.00 0.00 0.00 3.41
404 405 7.281999 TGCATCGTATTTATTCATTCAAGTGGA 59.718 33.333 0.00 0.00 0.00 4.02
405 406 7.416817 TGCATCGTATTTATTCATTCAAGTGG 58.583 34.615 0.00 0.00 0.00 4.00
406 407 8.124823 ACTGCATCGTATTTATTCATTCAAGTG 58.875 33.333 0.00 0.00 0.00 3.16
407 408 8.124823 CACTGCATCGTATTTATTCATTCAAGT 58.875 33.333 0.00 0.00 0.00 3.16
408 409 7.588854 CCACTGCATCGTATTTATTCATTCAAG 59.411 37.037 0.00 0.00 0.00 3.02
409 410 7.066887 ACCACTGCATCGTATTTATTCATTCAA 59.933 33.333 0.00 0.00 0.00 2.69
410 411 6.542005 ACCACTGCATCGTATTTATTCATTCA 59.458 34.615 0.00 0.00 0.00 2.57
411 412 6.959361 ACCACTGCATCGTATTTATTCATTC 58.041 36.000 0.00 0.00 0.00 2.67
412 413 6.942532 ACCACTGCATCGTATTTATTCATT 57.057 33.333 0.00 0.00 0.00 2.57
413 414 6.767902 AGAACCACTGCATCGTATTTATTCAT 59.232 34.615 0.00 0.00 0.00 2.57
415 416 6.604735 AGAACCACTGCATCGTATTTATTC 57.395 37.500 0.00 0.00 0.00 1.75
416 417 8.500753 TTTAGAACCACTGCATCGTATTTATT 57.499 30.769 0.00 0.00 0.00 1.40
417 418 8.500753 TTTTAGAACCACTGCATCGTATTTAT 57.499 30.769 0.00 0.00 0.00 1.40
418 419 7.908827 TTTTAGAACCACTGCATCGTATTTA 57.091 32.000 0.00 0.00 0.00 1.40
420 421 6.811253 TTTTTAGAACCACTGCATCGTATT 57.189 33.333 0.00 0.00 0.00 1.89
461 462 1.730612 GCGAACTAAAAAGGACCGGAG 59.269 52.381 9.46 0.00 0.00 4.63
462 463 1.070445 TGCGAACTAAAAAGGACCGGA 59.930 47.619 9.46 0.00 0.00 5.14
463 464 1.515081 TGCGAACTAAAAAGGACCGG 58.485 50.000 0.00 0.00 0.00 5.28
464 465 6.477688 TCTTATATGCGAACTAAAAAGGACCG 59.522 38.462 0.00 0.00 0.00 4.79
465 466 7.781548 TCTTATATGCGAACTAAAAAGGACC 57.218 36.000 0.00 0.00 0.00 4.46
475 476 9.601217 ACTTTAGACAAATCTTATATGCGAACT 57.399 29.630 0.00 0.00 36.29 3.01
476 477 9.851043 GACTTTAGACAAATCTTATATGCGAAC 57.149 33.333 0.00 0.00 36.29 3.95
477 478 9.594478 TGACTTTAGACAAATCTTATATGCGAA 57.406 29.630 0.00 0.00 36.29 4.70
478 479 9.594478 TTGACTTTAGACAAATCTTATATGCGA 57.406 29.630 0.00 0.00 36.29 5.10
479 480 9.855361 CTTGACTTTAGACAAATCTTATATGCG 57.145 33.333 0.00 0.00 36.29 4.73
486 487 8.997323 CATGAGTCTTGACTTTAGACAAATCTT 58.003 33.333 4.67 0.00 43.52 2.40
487 488 8.370940 TCATGAGTCTTGACTTTAGACAAATCT 58.629 33.333 4.66 0.00 43.52 2.40
488 489 8.539770 TCATGAGTCTTGACTTTAGACAAATC 57.460 34.615 4.66 0.00 43.52 2.17
489 490 8.778358 GTTCATGAGTCTTGACTTTAGACAAAT 58.222 33.333 8.17 0.00 43.52 2.32
490 491 7.987458 AGTTCATGAGTCTTGACTTTAGACAAA 59.013 33.333 8.17 0.00 43.52 2.83
491 492 7.500992 AGTTCATGAGTCTTGACTTTAGACAA 58.499 34.615 8.17 0.00 43.52 3.18
492 493 7.055667 AGTTCATGAGTCTTGACTTTAGACA 57.944 36.000 8.17 0.00 43.52 3.41
493 494 7.954788 AAGTTCATGAGTCTTGACTTTAGAC 57.045 36.000 8.17 3.73 41.83 2.59
494 495 8.204160 TCAAAGTTCATGAGTCTTGACTTTAGA 58.796 33.333 21.87 19.33 30.48 2.10
495 496 8.279103 GTCAAAGTTCATGAGTCTTGACTTTAG 58.721 37.037 24.40 16.85 30.48 1.85
496 497 7.226720 GGTCAAAGTTCATGAGTCTTGACTTTA 59.773 37.037 27.34 13.99 30.48 1.85
497 498 6.038714 GGTCAAAGTTCATGAGTCTTGACTTT 59.961 38.462 27.34 21.33 31.09 2.66
498 499 5.529060 GGTCAAAGTTCATGAGTCTTGACTT 59.471 40.000 27.34 18.09 0.00 3.01
499 500 5.059833 GGTCAAAGTTCATGAGTCTTGACT 58.940 41.667 27.34 14.41 0.00 3.41
500 501 4.816385 TGGTCAAAGTTCATGAGTCTTGAC 59.184 41.667 24.01 24.01 0.00 3.18
501 502 5.034852 TGGTCAAAGTTCATGAGTCTTGA 57.965 39.130 13.41 11.65 0.00 3.02
502 503 5.297776 AGTTGGTCAAAGTTCATGAGTCTTG 59.702 40.000 13.41 9.94 0.00 3.02
503 504 5.440610 AGTTGGTCAAAGTTCATGAGTCTT 58.559 37.500 8.71 8.71 0.00 3.01
504 505 5.041191 AGTTGGTCAAAGTTCATGAGTCT 57.959 39.130 0.00 0.00 0.00 3.24
505 506 5.757850 AAGTTGGTCAAAGTTCATGAGTC 57.242 39.130 0.00 0.00 0.00 3.36
506 507 7.823745 ATAAAGTTGGTCAAAGTTCATGAGT 57.176 32.000 0.00 0.00 30.74 3.41
507 508 9.831737 CTTATAAAGTTGGTCAAAGTTCATGAG 57.168 33.333 0.00 0.00 30.74 2.90
508 509 9.567776 TCTTATAAAGTTGGTCAAAGTTCATGA 57.432 29.630 0.00 0.00 30.74 3.07
535 536 8.864069 TTCACGTTGTGAATGTTGATATTTTT 57.136 26.923 8.21 0.00 45.88 1.94
549 550 9.863845 TCTACTAATATTGATTTCACGTTGTGA 57.136 29.630 0.00 0.00 41.09 3.58
552 553 9.586150 GCATCTACTAATATTGATTTCACGTTG 57.414 33.333 0.00 0.00 0.00 4.10
553 554 8.487970 CGCATCTACTAATATTGATTTCACGTT 58.512 33.333 0.00 0.00 0.00 3.99
554 555 7.652105 ACGCATCTACTAATATTGATTTCACGT 59.348 33.333 0.00 0.00 0.00 4.49
555 556 8.007821 ACGCATCTACTAATATTGATTTCACG 57.992 34.615 0.00 0.00 0.00 4.35
556 557 8.978539 TGACGCATCTACTAATATTGATTTCAC 58.021 33.333 0.00 0.00 0.00 3.18
557 558 9.710900 ATGACGCATCTACTAATATTGATTTCA 57.289 29.630 0.00 0.00 0.00 2.69
558 559 9.964253 CATGACGCATCTACTAATATTGATTTC 57.036 33.333 0.00 0.00 0.00 2.17
559 560 9.710900 TCATGACGCATCTACTAATATTGATTT 57.289 29.630 0.00 0.00 0.00 2.17
560 561 9.144747 GTCATGACGCATCTACTAATATTGATT 57.855 33.333 10.69 0.00 0.00 2.57
561 562 8.526978 AGTCATGACGCATCTACTAATATTGAT 58.473 33.333 19.85 0.00 36.20 2.57
562 563 7.886338 AGTCATGACGCATCTACTAATATTGA 58.114 34.615 19.85 0.00 36.20 2.57
563 564 8.526218 AAGTCATGACGCATCTACTAATATTG 57.474 34.615 19.85 0.00 36.20 1.90
567 568 9.547753 AATTTAAGTCATGACGCATCTACTAAT 57.452 29.630 19.85 8.01 36.20 1.73
568 569 8.942338 AATTTAAGTCATGACGCATCTACTAA 57.058 30.769 19.85 6.26 36.20 2.24
569 570 8.942338 AAATTTAAGTCATGACGCATCTACTA 57.058 30.769 19.85 1.26 36.20 1.82
570 571 7.849804 AAATTTAAGTCATGACGCATCTACT 57.150 32.000 19.85 0.00 36.20 2.57
571 572 8.175069 TGAAAATTTAAGTCATGACGCATCTAC 58.825 33.333 19.85 8.81 36.20 2.59
572 573 8.262715 TGAAAATTTAAGTCATGACGCATCTA 57.737 30.769 19.85 5.66 36.20 1.98
573 574 7.144722 TGAAAATTTAAGTCATGACGCATCT 57.855 32.000 19.85 6.46 36.20 2.90
574 575 7.975866 ATGAAAATTTAAGTCATGACGCATC 57.024 32.000 19.85 11.06 36.20 3.91
575 576 9.289303 GTTATGAAAATTTAAGTCATGACGCAT 57.711 29.630 19.85 12.70 34.01 4.73
576 577 8.293157 TGTTATGAAAATTTAAGTCATGACGCA 58.707 29.630 19.85 9.13 39.73 5.24
577 578 8.667987 TGTTATGAAAATTTAAGTCATGACGC 57.332 30.769 19.85 0.00 39.73 5.19
600 601 9.745018 AGCATCTATTATGCCAAAGTTATATGT 57.255 29.630 6.36 0.00 45.59 2.29
641 642 9.643693 CAAACTTCATAAAGCTTGACCATATTT 57.356 29.630 0.00 0.00 39.77 1.40
642 643 9.023962 TCAAACTTCATAAAGCTTGACCATATT 57.976 29.630 0.00 0.00 40.77 1.28
643 644 8.579850 TCAAACTTCATAAAGCTTGACCATAT 57.420 30.769 0.00 0.00 40.77 1.78
644 645 7.994425 TCAAACTTCATAAAGCTTGACCATA 57.006 32.000 0.00 0.00 40.77 2.74
645 646 6.899393 TCAAACTTCATAAAGCTTGACCAT 57.101 33.333 0.00 0.00 40.77 3.55
667 668 8.654230 TCTGCATATAAGAATTGACTGAAGTC 57.346 34.615 3.41 3.41 44.97 3.01
668 669 8.263640 ACTCTGCATATAAGAATTGACTGAAGT 58.736 33.333 0.00 0.00 0.00 3.01
669 670 8.659925 ACTCTGCATATAAGAATTGACTGAAG 57.340 34.615 0.00 0.00 0.00 3.02
679 680 9.383519 CAGTCCTTTTTACTCTGCATATAAGAA 57.616 33.333 0.00 0.00 0.00 2.52
680 681 7.987458 CCAGTCCTTTTTACTCTGCATATAAGA 59.013 37.037 0.00 0.00 0.00 2.10
681 682 7.987458 TCCAGTCCTTTTTACTCTGCATATAAG 59.013 37.037 0.00 0.00 0.00 1.73
682 683 7.857456 TCCAGTCCTTTTTACTCTGCATATAA 58.143 34.615 0.00 0.00 0.00 0.98
683 684 7.419057 CCTCCAGTCCTTTTTACTCTGCATATA 60.419 40.741 0.00 0.00 0.00 0.86
684 685 6.313519 TCCAGTCCTTTTTACTCTGCATAT 57.686 37.500 0.00 0.00 0.00 1.78
685 686 5.338381 CCTCCAGTCCTTTTTACTCTGCATA 60.338 44.000 0.00 0.00 0.00 3.14
686 687 4.566488 CCTCCAGTCCTTTTTACTCTGCAT 60.566 45.833 0.00 0.00 0.00 3.96
687 688 3.244561 CCTCCAGTCCTTTTTACTCTGCA 60.245 47.826 0.00 0.00 0.00 4.41
688 689 3.339141 CCTCCAGTCCTTTTTACTCTGC 58.661 50.000 0.00 0.00 0.00 4.26
689 690 3.583086 TCCCTCCAGTCCTTTTTACTCTG 59.417 47.826 0.00 0.00 0.00 3.35
690 691 3.841255 CTCCCTCCAGTCCTTTTTACTCT 59.159 47.826 0.00 0.00 0.00 3.24
691 692 3.583526 ACTCCCTCCAGTCCTTTTTACTC 59.416 47.826 0.00 0.00 0.00 2.59
692 693 3.599348 ACTCCCTCCAGTCCTTTTTACT 58.401 45.455 0.00 0.00 0.00 2.24
693 694 4.285260 TGTACTCCCTCCAGTCCTTTTTAC 59.715 45.833 0.00 0.00 0.00 2.01
694 695 4.495565 TGTACTCCCTCCAGTCCTTTTTA 58.504 43.478 0.00 0.00 0.00 1.52
695 696 3.323775 TGTACTCCCTCCAGTCCTTTTT 58.676 45.455 0.00 0.00 0.00 1.94
696 697 2.986050 TGTACTCCCTCCAGTCCTTTT 58.014 47.619 0.00 0.00 0.00 2.27
697 698 2.715763 TGTACTCCCTCCAGTCCTTT 57.284 50.000 0.00 0.00 0.00 3.11
698 699 2.638363 GTTTGTACTCCCTCCAGTCCTT 59.362 50.000 0.00 0.00 0.00 3.36
699 700 2.158143 AGTTTGTACTCCCTCCAGTCCT 60.158 50.000 0.00 0.00 0.00 3.85
700 701 2.258109 AGTTTGTACTCCCTCCAGTCC 58.742 52.381 0.00 0.00 0.00 3.85
701 702 4.771054 TCTTAGTTTGTACTCCCTCCAGTC 59.229 45.833 0.00 0.00 35.78 3.51
702 703 4.748701 TCTTAGTTTGTACTCCCTCCAGT 58.251 43.478 0.00 0.00 35.78 4.00
703 704 5.941555 ATCTTAGTTTGTACTCCCTCCAG 57.058 43.478 0.00 0.00 35.78 3.86
704 705 5.783360 TCAATCTTAGTTTGTACTCCCTCCA 59.217 40.000 3.38 0.00 35.78 3.86
705 706 6.295719 TCAATCTTAGTTTGTACTCCCTCC 57.704 41.667 3.38 0.00 35.78 4.30
706 707 8.794335 AAATCAATCTTAGTTTGTACTCCCTC 57.206 34.615 3.38 0.00 35.78 4.30
707 708 9.588096 AAAAATCAATCTTAGTTTGTACTCCCT 57.412 29.630 3.38 0.00 35.78 4.20
708 709 9.626045 CAAAAATCAATCTTAGTTTGTACTCCC 57.374 33.333 3.38 0.00 35.78 4.30
784 785 5.095490 CGGAAAGAAAATAGGATGTGCAAC 58.905 41.667 0.00 0.00 37.35 4.17
806 807 0.665369 AAACCTAGACGCCGAACACG 60.665 55.000 0.00 0.00 0.00 4.49
807 808 1.505425 AAAACCTAGACGCCGAACAC 58.495 50.000 0.00 0.00 0.00 3.32
808 809 2.243602 AAAAACCTAGACGCCGAACA 57.756 45.000 0.00 0.00 0.00 3.18
809 810 3.742882 AGTTAAAAACCTAGACGCCGAAC 59.257 43.478 0.00 0.00 0.00 3.95
810 811 3.742369 CAGTTAAAAACCTAGACGCCGAA 59.258 43.478 0.00 0.00 0.00 4.30
811 812 3.005684 TCAGTTAAAAACCTAGACGCCGA 59.994 43.478 0.00 0.00 0.00 5.54
812 813 3.319755 TCAGTTAAAAACCTAGACGCCG 58.680 45.455 0.00 0.00 0.00 6.46
915 968 2.357517 CAACTCAAGCTCGGCCGT 60.358 61.111 27.15 1.97 0.00 5.68
1409 1478 1.450848 CATCAGATGCGCCTGTGGT 60.451 57.895 4.18 0.00 35.71 4.16
1414 1483 2.587194 GCGACATCAGATGCGCCT 60.587 61.111 27.82 0.00 44.21 5.52
1732 6946 3.591254 GACCTTCTTCACGGGCGCT 62.591 63.158 7.64 0.00 0.00 5.92
1754 6968 4.697756 CTTGGAAGCGACGGGGCA 62.698 66.667 0.00 0.00 34.64 5.36
1846 7063 0.040067 CCCTTCTTGCACGCAAAGTC 60.040 55.000 5.87 0.00 35.33 3.01
1850 7067 2.424842 ATCCCCCTTCTTGCACGCAA 62.425 55.000 4.12 4.12 0.00 4.85
2238 7470 7.012704 GGCTCATCTGCTTCACTTTGATTATTA 59.987 37.037 0.00 0.00 0.00 0.98
2474 7717 2.292267 CAAGACGCCAATGCCTAAGAT 58.708 47.619 0.00 0.00 0.00 2.40
2496 7740 5.198274 GTCAGAAACTGCAACTTTAACTCG 58.802 41.667 0.00 0.00 0.00 4.18
2598 7891 2.775890 AGTCTGCACATCAAGGACTTG 58.224 47.619 5.72 5.72 41.71 3.16
2599 7892 3.307059 GGTAGTCTGCACATCAAGGACTT 60.307 47.826 7.70 0.00 38.13 3.01
2600 7893 2.234908 GGTAGTCTGCACATCAAGGACT 59.765 50.000 7.55 7.55 39.95 3.85
2601 7894 2.028112 TGGTAGTCTGCACATCAAGGAC 60.028 50.000 0.00 0.00 0.00 3.85
2602 7895 2.256306 TGGTAGTCTGCACATCAAGGA 58.744 47.619 0.00 0.00 0.00 3.36
2603 7896 2.768253 TGGTAGTCTGCACATCAAGG 57.232 50.000 0.00 0.00 0.00 3.61
2604 7897 3.668447 ACTTGGTAGTCTGCACATCAAG 58.332 45.455 0.00 0.00 34.73 3.02
2605 7898 3.664107 GACTTGGTAGTCTGCACATCAA 58.336 45.455 0.00 0.00 45.99 2.57
2606 7899 3.319137 GACTTGGTAGTCTGCACATCA 57.681 47.619 0.00 0.00 45.99 3.07
2613 7906 7.918033 CTGATTACAGTATGACTTGGTAGTCTG 59.082 40.741 6.83 0.00 43.19 3.51
2614 7907 8.001881 CTGATTACAGTATGACTTGGTAGTCT 57.998 38.462 6.83 0.00 43.19 3.24
2733 8054 6.006449 AGAGCACCACAATGATTTAAGAAGT 58.994 36.000 0.00 0.00 0.00 3.01
2734 8055 6.506500 AGAGCACCACAATGATTTAAGAAG 57.493 37.500 0.00 0.00 0.00 2.85
2736 8057 6.711277 ACTAGAGCACCACAATGATTTAAGA 58.289 36.000 0.00 0.00 0.00 2.10
2737 8058 6.595326 TGACTAGAGCACCACAATGATTTAAG 59.405 38.462 0.00 0.00 0.00 1.85
2738 8059 6.472016 TGACTAGAGCACCACAATGATTTAA 58.528 36.000 0.00 0.00 0.00 1.52
2740 8061 4.910195 TGACTAGAGCACCACAATGATTT 58.090 39.130 0.00 0.00 0.00 2.17
2742 8063 3.771479 TCTGACTAGAGCACCACAATGAT 59.229 43.478 0.00 0.00 0.00 2.45
2744 8065 3.599730 TCTGACTAGAGCACCACAATG 57.400 47.619 0.00 0.00 0.00 2.82
2749 8070 3.388024 ACACTTTTCTGACTAGAGCACCA 59.612 43.478 0.00 0.00 33.70 4.17
2750 8071 3.743396 CACACTTTTCTGACTAGAGCACC 59.257 47.826 0.00 0.00 33.70 5.01
2752 8073 3.181466 TGCACACTTTTCTGACTAGAGCA 60.181 43.478 0.00 0.00 33.70 4.26
2753 8074 3.393800 TGCACACTTTTCTGACTAGAGC 58.606 45.455 0.00 0.00 33.70 4.09
2761 8082 2.159338 AGCACAACTGCACACTTTTCTG 60.159 45.455 0.00 0.00 46.97 3.02
2762 8083 2.094675 AGCACAACTGCACACTTTTCT 58.905 42.857 0.00 0.00 46.97 2.52
2763 8084 2.098117 AGAGCACAACTGCACACTTTTC 59.902 45.455 0.00 0.00 46.97 2.29
2764 8085 2.094675 AGAGCACAACTGCACACTTTT 58.905 42.857 0.00 0.00 46.97 2.27
2765 8086 1.402968 CAGAGCACAACTGCACACTTT 59.597 47.619 0.00 0.00 46.97 2.66
2767 8088 2.699073 CAGAGCACAACTGCACACT 58.301 52.632 0.00 0.00 46.97 3.55
2773 8094 0.321034 TGCCTAGCAGAGCACAACTG 60.321 55.000 0.00 0.00 38.27 3.16
2774 8095 0.397941 TTGCCTAGCAGAGCACAACT 59.602 50.000 0.00 0.00 40.61 3.16
2775 8096 0.801251 CTTGCCTAGCAGAGCACAAC 59.199 55.000 0.00 0.00 40.61 3.32
2776 8097 0.397941 ACTTGCCTAGCAGAGCACAA 59.602 50.000 0.00 0.00 40.61 3.33
2778 8099 0.742635 GGACTTGCCTAGCAGAGCAC 60.743 60.000 0.00 0.00 40.61 4.40
2779 8100 1.194121 TGGACTTGCCTAGCAGAGCA 61.194 55.000 0.00 0.00 40.61 4.26
2780 8101 0.036010 TTGGACTTGCCTAGCAGAGC 60.036 55.000 0.00 0.00 40.61 4.09
2781 8102 1.731720 GTTGGACTTGCCTAGCAGAG 58.268 55.000 0.00 0.00 40.61 3.35
2782 8103 0.037326 CGTTGGACTTGCCTAGCAGA 60.037 55.000 0.00 0.00 40.61 4.26
2783 8104 1.639298 GCGTTGGACTTGCCTAGCAG 61.639 60.000 0.00 0.00 40.61 4.24
2785 8106 1.639298 CTGCGTTGGACTTGCCTAGC 61.639 60.000 0.00 0.00 37.63 3.42
2787 8108 0.037326 CTCTGCGTTGGACTTGCCTA 60.037 55.000 0.00 0.00 37.63 3.93
2789 8110 2.328099 CCTCTGCGTTGGACTTGCC 61.328 63.158 0.00 0.00 37.10 4.52
2790 8111 1.166531 AACCTCTGCGTTGGACTTGC 61.167 55.000 0.00 0.00 0.00 4.01
2791 8112 0.868406 GAACCTCTGCGTTGGACTTG 59.132 55.000 0.00 0.00 0.00 3.16
2793 8114 0.034059 CAGAACCTCTGCGTTGGACT 59.966 55.000 0.00 0.00 37.72 3.85
2794 8115 0.033504 TCAGAACCTCTGCGTTGGAC 59.966 55.000 0.00 0.00 43.95 4.02
2795 8116 0.976641 ATCAGAACCTCTGCGTTGGA 59.023 50.000 0.00 0.00 43.95 3.53
2796 8117 2.093973 AGTATCAGAACCTCTGCGTTGG 60.094 50.000 0.00 0.00 43.95 3.77
2797 8118 2.926200 CAGTATCAGAACCTCTGCGTTG 59.074 50.000 0.00 0.00 43.95 4.10
2798 8119 2.675317 GCAGTATCAGAACCTCTGCGTT 60.675 50.000 0.00 0.00 43.95 4.84
2799 8120 1.134965 GCAGTATCAGAACCTCTGCGT 60.135 52.381 0.00 0.00 43.95 5.24
2801 8122 2.548875 CAGCAGTATCAGAACCTCTGC 58.451 52.381 7.27 7.27 43.95 4.26
2802 8123 2.762887 TCCAGCAGTATCAGAACCTCTG 59.237 50.000 0.00 0.00 45.59 3.35
2803 8124 3.107402 TCCAGCAGTATCAGAACCTCT 57.893 47.619 0.00 0.00 0.00 3.69
2804 8125 3.196685 ACTTCCAGCAGTATCAGAACCTC 59.803 47.826 0.00 0.00 0.00 3.85
2805 8126 3.055530 CACTTCCAGCAGTATCAGAACCT 60.056 47.826 0.00 0.00 0.00 3.50
2806 8127 3.055819 TCACTTCCAGCAGTATCAGAACC 60.056 47.826 0.00 0.00 0.00 3.62
2967 9478 8.141268 CAGGTTAGTTGGACAAATTTTGTATGT 58.859 33.333 14.49 1.99 45.52 2.29
3086 9597 7.607607 TGCATCATATTTTCACAAGTACAGAGT 59.392 33.333 0.00 0.00 0.00 3.24
3199 9791 1.352017 ACAATGGACTGCTGGATGACA 59.648 47.619 0.00 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.