Multiple sequence alignment - TraesCS5A01G148600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G148600 chr5A 100.000 4162 0 0 1 4162 326059294 326055133 0.000000e+00 7686.0
1 TraesCS5A01G148600 chr5B 92.382 1549 79 15 1889 3417 275267838 275266309 0.000000e+00 2170.0
2 TraesCS5A01G148600 chr5B 89.577 1372 40 25 404 1743 275269224 275267924 0.000000e+00 1646.0
3 TraesCS5A01G148600 chr5B 91.176 238 15 4 3929 4162 275264910 275264675 6.710000e-83 318.0
4 TraesCS5A01G148600 chr5B 86.498 237 30 1 3708 3942 275266019 275265783 4.130000e-65 259.0
5 TraesCS5A01G148600 chr5B 86.250 240 32 1 153 392 669432371 669432133 4.130000e-65 259.0
6 TraesCS5A01G148600 chr5B 90.435 115 10 1 517 631 275296328 275296215 2.590000e-32 150.0
7 TraesCS5A01G148600 chr5B 100.000 29 0 0 1826 1854 275267889 275267861 2.000000e-03 54.7
8 TraesCS5A01G148600 chr5D 94.334 1359 37 17 404 1746 230504555 230505889 0.000000e+00 2047.0
9 TraesCS5A01G148600 chr5D 95.284 721 23 4 2700 3417 230506731 230507443 0.000000e+00 1133.0
10 TraesCS5A01G148600 chr5D 91.275 447 29 4 1887 2329 230505977 230506417 5.950000e-168 601.0
11 TraesCS5A01G148600 chr5D 86.667 540 53 8 3416 3942 230507486 230508019 7.760000e-162 580.0
12 TraesCS5A01G148600 chr5D 86.245 269 35 1 124 392 530209123 530208857 1.460000e-74 291.0
13 TraesCS5A01G148600 chr5D 94.022 184 9 2 3929 4112 230508891 230509072 1.140000e-70 278.0
14 TraesCS5A01G148600 chr7D 79.760 499 87 9 3444 3937 386762545 386763034 2.380000e-92 350.0
15 TraesCS5A01G148600 chr7D 77.468 466 89 8 3487 3937 5318434 5318898 8.870000e-67 265.0
16 TraesCS5A01G148600 chr4A 76.911 654 107 30 1060 1703 478302678 478302059 8.620000e-87 331.0
17 TraesCS5A01G148600 chr4A 86.667 270 27 4 132 392 535262274 535262543 1.460000e-74 291.0
18 TraesCS5A01G148600 chr4A 81.481 351 59 6 1058 1405 478219654 478219307 2.450000e-72 283.0
19 TraesCS5A01G148600 chr4A 83.764 271 41 3 129 397 198724344 198724613 1.920000e-63 254.0
20 TraesCS5A01G148600 chr4A 79.387 359 70 4 1060 1416 478339981 478339625 2.480000e-62 250.0
21 TraesCS5A01G148600 chr7B 89.407 236 24 1 158 392 23066636 23066401 3.150000e-76 296.0
22 TraesCS5A01G148600 chr7B 79.677 310 47 7 3451 3749 60611454 60611150 4.220000e-50 209.0
23 TraesCS5A01G148600 chr7B 73.704 270 59 11 2887 3150 22261345 22261608 1.230000e-15 95.3
24 TraesCS5A01G148600 chr3D 88.285 239 28 0 154 392 579302655 579302417 1.890000e-73 287.0
25 TraesCS5A01G148600 chr3D 87.552 241 29 1 157 397 318879071 318879310 1.140000e-70 278.0
26 TraesCS5A01G148600 chr3D 77.612 134 23 5 1259 1390 177778983 177779111 1.600000e-09 75.0
27 TraesCS5A01G148600 chr1D 87.755 245 30 0 153 397 195760600 195760356 1.890000e-73 287.0
28 TraesCS5A01G148600 chr1D 81.395 86 11 4 3487 3571 53912525 53912444 9.660000e-07 65.8
29 TraesCS5A01G148600 chr4D 81.250 352 58 8 1058 1405 97957977 97958324 1.140000e-70 278.0
30 TraesCS5A01G148600 chr4D 78.780 377 76 4 1042 1416 97508655 97509029 2.480000e-62 250.0
31 TraesCS5A01G148600 chr4D 79.885 348 64 5 1060 1403 97720684 97721029 2.480000e-62 250.0
32 TraesCS5A01G148600 chr4D 87.831 189 19 2 1515 1703 97721111 97721295 7.010000e-53 219.0
33 TraesCS5A01G148600 chr4D 87.831 189 19 2 1515 1703 97765763 97765579 7.010000e-53 219.0
34 TraesCS5A01G148600 chr4D 87.356 174 22 0 1530 1703 97958422 97958595 2.540000e-47 200.0
35 TraesCS5A01G148600 chr4B 80.159 378 69 6 1042 1416 139399173 139399547 1.140000e-70 278.0
36 TraesCS5A01G148600 chr4B 87.931 174 21 0 1530 1703 139399610 139399783 5.450000e-49 206.0
37 TraesCS5A01G148600 chr4B 87.931 174 21 0 1530 1703 139472754 139472927 5.450000e-49 206.0
38 TraesCS5A01G148600 chr4B 87.931 174 21 0 1530 1703 139511202 139511375 5.450000e-49 206.0
39 TraesCS5A01G148600 chr4B 87.500 168 21 0 1536 1703 139531505 139531672 1.180000e-45 195.0
40 TraesCS5A01G148600 chr4B 81.974 233 37 5 1187 1416 139511506 139511736 4.250000e-45 193.0
41 TraesCS5A01G148600 chr2D 87.083 240 31 0 153 392 167765982 167766221 5.300000e-69 272.0
42 TraesCS5A01G148600 chr2D 78.710 310 59 4 3631 3937 580567280 580567585 2.540000e-47 200.0
43 TraesCS5A01G148600 chr2D 79.137 278 49 7 3667 3940 57100390 57100118 2.560000e-42 183.0
44 TraesCS5A01G148600 chr2D 74.890 227 51 4 1180 1402 95645020 95645244 9.520000e-17 99.0
45 TraesCS5A01G148600 chr6D 77.574 437 73 15 3525 3940 5560506 5560074 1.500000e-59 241.0
46 TraesCS5A01G148600 chr6D 97.590 83 2 0 1 83 266070655 266070573 4.340000e-30 143.0
47 TraesCS5A01G148600 chr6D 95.238 84 3 1 1 83 266069357 266069274 9.390000e-27 132.0
48 TraesCS5A01G148600 chr1A 75.143 523 110 16 3431 3937 285955614 285956132 1.160000e-55 228.0
49 TraesCS5A01G148600 chr7A 81.955 266 46 1 3677 3940 392923384 392923119 1.510000e-54 224.0
50 TraesCS5A01G148600 chr7A 74.349 269 59 8 2887 3150 80133789 80134052 5.690000e-19 106.0
51 TraesCS5A01G148600 chr7A 73.978 269 60 8 2887 3150 80086604 80086867 2.650000e-17 100.0
52 TraesCS5A01G148600 chr2A 97.590 83 2 0 1 83 324620023 324620105 4.340000e-30 143.0
53 TraesCS5A01G148600 chr2B 75.771 227 49 5 1180 1402 146992809 146993033 4.400000e-20 110.0
54 TraesCS5A01G148600 chr3B 84.337 83 11 2 1309 1390 256434610 256434691 3.450000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G148600 chr5A 326055133 326059294 4161 True 7686.00 7686 100.0000 1 4162 1 chr5A.!!$R1 4161
1 TraesCS5A01G148600 chr5B 275264675 275269224 4549 True 889.54 2170 91.9266 404 4162 5 chr5B.!!$R3 3758
2 TraesCS5A01G148600 chr5D 230504555 230509072 4517 False 927.80 2047 92.3164 404 4112 5 chr5D.!!$F1 3708
3 TraesCS5A01G148600 chr4A 478302059 478302678 619 True 331.00 331 76.9110 1060 1703 1 chr4A.!!$R2 643
4 TraesCS5A01G148600 chr4D 97957977 97958595 618 False 239.00 278 84.3030 1058 1703 2 chr4D.!!$F3 645
5 TraesCS5A01G148600 chr4D 97720684 97721295 611 False 234.50 250 83.8580 1060 1703 2 chr4D.!!$F2 643
6 TraesCS5A01G148600 chr4B 139399173 139399783 610 False 242.00 278 84.0450 1042 1703 2 chr4B.!!$F3 661
7 TraesCS5A01G148600 chr1A 285955614 285956132 518 False 228.00 228 75.1430 3431 3937 1 chr1A.!!$F1 506

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
64 65 0.035915 GCCGAGGCCTTTTTCTCTCT 60.036 55.0 6.77 0.0 34.56 3.10 F
90 91 0.108804 CAACTCGGCTCATACCACGT 60.109 55.0 0.00 0.0 0.00 4.49 F
91 92 0.172803 AACTCGGCTCATACCACGTC 59.827 55.0 0.00 0.0 0.00 4.34 F
154 155 0.174845 ACGCACACATACATACGCCT 59.825 50.0 0.00 0.0 0.00 5.52 F
374 375 0.318275 CATACGCCGAGCTCCTTCTC 60.318 60.0 8.47 0.0 0.00 2.87 F
2035 2136 0.530288 TGCACGATACAGCTGTAGCA 59.470 50.0 34.11 29.9 45.16 3.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1822 1912 0.035152 GCACCAGTGATCATCCACCA 60.035 55.000 0.00 0.00 37.76 4.17 R
1823 1913 0.254178 AGCACCAGTGATCATCCACC 59.746 55.000 0.00 0.00 37.76 4.61 R
1931 2021 0.938008 GGGAATCGATTCTTGTCGCC 59.062 55.000 31.32 21.19 41.22 5.54 R
2049 2150 4.630069 TCAAAACTTAGCTATCAGTTCGGC 59.370 41.667 10.52 0.00 31.79 5.54 R
2330 2432 0.807496 CAACTAAAGCCAGAGCCAGC 59.193 55.000 0.00 0.00 41.25 4.85 R
3419 3568 0.109226 GGTGACGTCGGGAGAAAGAG 60.109 60.000 11.62 0.00 42.89 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.162640 GACGAAATTTTGCCGGGC 57.837 55.556 13.32 13.32 0.00 6.13
18 19 1.287503 GACGAAATTTTGCCGGGCA 59.712 52.632 19.77 19.77 36.47 5.36
26 27 4.577246 TTGCCGGGCAACAAACGC 62.577 61.111 29.66 0.00 43.99 4.84
32 33 3.680786 GGCAACAAACGCCCTCCC 61.681 66.667 0.00 0.00 44.22 4.30
33 34 3.680786 GCAACAAACGCCCTCCCC 61.681 66.667 0.00 0.00 0.00 4.81
34 35 2.989253 CAACAAACGCCCTCCCCC 60.989 66.667 0.00 0.00 0.00 5.40
35 36 4.653888 AACAAACGCCCTCCCCCG 62.654 66.667 0.00 0.00 0.00 5.73
55 56 4.736896 GACGAACGCCGAGGCCTT 62.737 66.667 6.77 3.14 41.76 4.35
56 57 4.309950 ACGAACGCCGAGGCCTTT 62.310 61.111 6.77 0.00 41.76 3.11
57 58 3.047877 CGAACGCCGAGGCCTTTT 61.048 61.111 6.77 0.00 41.76 2.27
58 59 2.613506 CGAACGCCGAGGCCTTTTT 61.614 57.895 6.77 0.00 41.76 1.94
59 60 1.209383 GAACGCCGAGGCCTTTTTC 59.791 57.895 6.77 1.73 37.98 2.29
60 61 1.228154 AACGCCGAGGCCTTTTTCT 60.228 52.632 6.77 0.00 37.98 2.52
61 62 1.235281 AACGCCGAGGCCTTTTTCTC 61.235 55.000 6.77 0.00 37.98 2.87
62 63 1.376037 CGCCGAGGCCTTTTTCTCT 60.376 57.895 6.77 0.00 37.98 3.10
63 64 1.362406 CGCCGAGGCCTTTTTCTCTC 61.362 60.000 6.77 0.00 37.98 3.20
64 65 0.035915 GCCGAGGCCTTTTTCTCTCT 60.036 55.000 6.77 0.00 34.56 3.10
65 66 1.207329 GCCGAGGCCTTTTTCTCTCTA 59.793 52.381 6.77 0.00 34.56 2.43
66 67 2.740256 GCCGAGGCCTTTTTCTCTCTAG 60.740 54.545 6.77 0.00 34.56 2.43
67 68 2.498078 CCGAGGCCTTTTTCTCTCTAGT 59.502 50.000 6.77 0.00 0.00 2.57
68 69 3.700038 CCGAGGCCTTTTTCTCTCTAGTA 59.300 47.826 6.77 0.00 0.00 1.82
69 70 4.342665 CCGAGGCCTTTTTCTCTCTAGTAT 59.657 45.833 6.77 0.00 0.00 2.12
70 71 5.163395 CCGAGGCCTTTTTCTCTCTAGTATT 60.163 44.000 6.77 0.00 0.00 1.89
71 72 5.980715 CGAGGCCTTTTTCTCTCTAGTATTC 59.019 44.000 6.77 0.00 0.00 1.75
72 73 6.405953 CGAGGCCTTTTTCTCTCTAGTATTCA 60.406 42.308 6.77 0.00 0.00 2.57
73 74 7.259088 AGGCCTTTTTCTCTCTAGTATTCAA 57.741 36.000 0.00 0.00 0.00 2.69
74 75 7.106890 AGGCCTTTTTCTCTCTAGTATTCAAC 58.893 38.462 0.00 0.00 0.00 3.18
75 76 7.037945 AGGCCTTTTTCTCTCTAGTATTCAACT 60.038 37.037 0.00 0.00 42.62 3.16
76 77 7.279090 GGCCTTTTTCTCTCTAGTATTCAACTC 59.721 40.741 0.00 0.00 39.80 3.01
77 78 7.009723 GCCTTTTTCTCTCTAGTATTCAACTCG 59.990 40.741 0.00 0.00 39.80 4.18
78 79 7.489757 CCTTTTTCTCTCTAGTATTCAACTCGG 59.510 40.741 0.00 0.00 39.80 4.63
79 80 5.502153 TTCTCTCTAGTATTCAACTCGGC 57.498 43.478 0.00 0.00 39.80 5.54
80 81 4.783055 TCTCTCTAGTATTCAACTCGGCT 58.217 43.478 0.00 0.00 39.80 5.52
81 82 4.817464 TCTCTCTAGTATTCAACTCGGCTC 59.183 45.833 0.00 0.00 39.80 4.70
82 83 4.524053 TCTCTAGTATTCAACTCGGCTCA 58.476 43.478 0.00 0.00 39.80 4.26
83 84 5.133941 TCTCTAGTATTCAACTCGGCTCAT 58.866 41.667 0.00 0.00 39.80 2.90
84 85 6.296803 TCTCTAGTATTCAACTCGGCTCATA 58.703 40.000 0.00 0.00 39.80 2.15
85 86 6.205076 TCTCTAGTATTCAACTCGGCTCATAC 59.795 42.308 0.00 0.00 39.80 2.39
86 87 4.323553 AGTATTCAACTCGGCTCATACC 57.676 45.455 0.00 0.00 30.33 2.73
87 88 3.704566 AGTATTCAACTCGGCTCATACCA 59.295 43.478 0.00 0.00 30.33 3.25
88 89 2.380084 TTCAACTCGGCTCATACCAC 57.620 50.000 0.00 0.00 0.00 4.16
89 90 0.172578 TCAACTCGGCTCATACCACG 59.827 55.000 0.00 0.00 0.00 4.94
90 91 0.108804 CAACTCGGCTCATACCACGT 60.109 55.000 0.00 0.00 0.00 4.49
91 92 0.172803 AACTCGGCTCATACCACGTC 59.827 55.000 0.00 0.00 0.00 4.34
92 93 0.963856 ACTCGGCTCATACCACGTCA 60.964 55.000 0.00 0.00 0.00 4.35
93 94 0.248661 CTCGGCTCATACCACGTCAG 60.249 60.000 0.00 0.00 0.00 3.51
94 95 1.226974 CGGCTCATACCACGTCAGG 60.227 63.158 0.00 0.00 0.00 3.86
95 96 1.521681 GGCTCATACCACGTCAGGC 60.522 63.158 0.00 0.00 0.00 4.85
96 97 1.517832 GCTCATACCACGTCAGGCT 59.482 57.895 0.00 0.00 0.00 4.58
97 98 0.744874 GCTCATACCACGTCAGGCTA 59.255 55.000 0.00 0.00 0.00 3.93
98 99 1.536284 GCTCATACCACGTCAGGCTAC 60.536 57.143 0.00 0.00 0.00 3.58
99 100 1.749063 CTCATACCACGTCAGGCTACA 59.251 52.381 0.00 0.00 0.00 2.74
100 101 2.165641 CTCATACCACGTCAGGCTACAA 59.834 50.000 0.00 0.00 0.00 2.41
101 102 2.563620 TCATACCACGTCAGGCTACAAA 59.436 45.455 0.00 0.00 0.00 2.83
102 103 2.443887 TACCACGTCAGGCTACAAAC 57.556 50.000 0.00 0.00 0.00 2.93
103 104 0.756903 ACCACGTCAGGCTACAAACT 59.243 50.000 0.00 0.00 0.00 2.66
104 105 1.148310 CCACGTCAGGCTACAAACTG 58.852 55.000 0.00 0.00 36.07 3.16
105 106 1.148310 CACGTCAGGCTACAAACTGG 58.852 55.000 0.00 0.00 35.47 4.00
106 107 1.045407 ACGTCAGGCTACAAACTGGA 58.955 50.000 0.00 0.00 35.47 3.86
107 108 1.000955 ACGTCAGGCTACAAACTGGAG 59.999 52.381 0.00 0.00 35.47 3.86
108 109 1.673033 CGTCAGGCTACAAACTGGAGG 60.673 57.143 0.00 0.00 35.47 4.30
110 111 3.890674 GGCTACAAACTGGAGGCG 58.109 61.111 0.00 0.00 44.28 5.52
111 112 2.399356 GGCTACAAACTGGAGGCGC 61.399 63.158 0.00 0.00 44.28 6.53
112 113 1.671054 GCTACAAACTGGAGGCGCA 60.671 57.895 10.83 0.00 0.00 6.09
113 114 1.912371 GCTACAAACTGGAGGCGCAC 61.912 60.000 10.83 1.82 0.00 5.34
114 115 0.602638 CTACAAACTGGAGGCGCACA 60.603 55.000 10.83 3.83 0.00 4.57
115 116 0.882927 TACAAACTGGAGGCGCACAC 60.883 55.000 10.83 0.00 0.00 3.82
116 117 2.186160 CAAACTGGAGGCGCACACA 61.186 57.895 10.83 2.99 0.00 3.72
117 118 2.186826 AAACTGGAGGCGCACACAC 61.187 57.895 10.83 0.00 0.00 3.82
118 119 4.969196 ACTGGAGGCGCACACACG 62.969 66.667 10.83 1.52 0.00 4.49
126 127 4.589700 CGCACACACGCACACCAC 62.590 66.667 0.00 0.00 0.00 4.16
127 128 3.504273 GCACACACGCACACCACA 61.504 61.111 0.00 0.00 0.00 4.17
128 129 2.403186 CACACACGCACACCACAC 59.597 61.111 0.00 0.00 0.00 3.82
129 130 2.046796 ACACACGCACACCACACA 60.047 55.556 0.00 0.00 0.00 3.72
130 131 2.395360 ACACACGCACACCACACAC 61.395 57.895 0.00 0.00 0.00 3.82
131 132 3.192230 ACACGCACACCACACACG 61.192 61.111 0.00 0.00 0.00 4.49
132 133 4.589700 CACGCACACCACACACGC 62.590 66.667 0.00 0.00 0.00 5.34
134 135 4.589700 CGCACACCACACACGCAC 62.590 66.667 0.00 0.00 0.00 5.34
135 136 3.504273 GCACACCACACACGCACA 61.504 61.111 0.00 0.00 0.00 4.57
136 137 2.403186 CACACCACACACGCACAC 59.597 61.111 0.00 0.00 0.00 3.82
138 139 4.589700 CACCACACACGCACACGC 62.590 66.667 0.00 0.00 45.53 5.34
140 141 4.589700 CCACACACGCACACGCAC 62.590 66.667 0.00 0.00 45.53 5.34
141 142 3.858989 CACACACGCACACGCACA 61.859 61.111 0.00 0.00 45.53 4.57
142 143 3.860125 ACACACGCACACGCACAC 61.860 61.111 0.00 0.00 45.53 3.82
143 144 3.858989 CACACGCACACGCACACA 61.859 61.111 0.00 0.00 45.53 3.72
144 145 2.894879 ACACGCACACGCACACAT 60.895 55.556 0.00 0.00 45.53 3.21
145 146 1.592939 ACACGCACACGCACACATA 60.593 52.632 0.00 0.00 45.53 2.29
146 147 1.154672 CACGCACACGCACACATAC 60.155 57.895 0.00 0.00 45.53 2.39
147 148 1.592939 ACGCACACGCACACATACA 60.593 52.632 0.00 0.00 45.53 2.29
148 149 0.948623 ACGCACACGCACACATACAT 60.949 50.000 0.00 0.00 45.53 2.29
149 150 0.995728 CGCACACGCACACATACATA 59.004 50.000 0.00 0.00 38.40 2.29
150 151 1.266842 CGCACACGCACACATACATAC 60.267 52.381 0.00 0.00 38.40 2.39
151 152 1.266842 GCACACGCACACATACATACG 60.267 52.381 0.00 0.00 38.36 3.06
152 153 0.996462 ACACGCACACATACATACGC 59.004 50.000 0.00 0.00 0.00 4.42
153 154 0.300491 CACGCACACATACATACGCC 59.700 55.000 0.00 0.00 0.00 5.68
154 155 0.174845 ACGCACACATACATACGCCT 59.825 50.000 0.00 0.00 0.00 5.52
155 156 1.406180 ACGCACACATACATACGCCTA 59.594 47.619 0.00 0.00 0.00 3.93
156 157 2.159212 ACGCACACATACATACGCCTAA 60.159 45.455 0.00 0.00 0.00 2.69
157 158 2.217847 CGCACACATACATACGCCTAAC 59.782 50.000 0.00 0.00 0.00 2.34
169 170 2.358939 CGCCTAACGTGGTTTACTCT 57.641 50.000 0.00 0.00 36.87 3.24
170 171 3.492421 CGCCTAACGTGGTTTACTCTA 57.508 47.619 0.00 0.00 36.87 2.43
171 172 4.037858 CGCCTAACGTGGTTTACTCTAT 57.962 45.455 0.00 0.00 36.87 1.98
172 173 4.040376 CGCCTAACGTGGTTTACTCTATC 58.960 47.826 0.00 0.00 36.87 2.08
173 174 4.439153 CGCCTAACGTGGTTTACTCTATCA 60.439 45.833 0.00 0.00 36.87 2.15
174 175 5.598769 GCCTAACGTGGTTTACTCTATCAT 58.401 41.667 0.00 0.00 0.00 2.45
175 176 6.513884 CGCCTAACGTGGTTTACTCTATCATA 60.514 42.308 0.00 0.00 36.87 2.15
176 177 6.640092 GCCTAACGTGGTTTACTCTATCATAC 59.360 42.308 0.00 0.00 0.00 2.39
177 178 7.469732 GCCTAACGTGGTTTACTCTATCATACT 60.470 40.741 0.00 0.00 0.00 2.12
178 179 8.411683 CCTAACGTGGTTTACTCTATCATACTT 58.588 37.037 0.00 0.00 0.00 2.24
179 180 9.448294 CTAACGTGGTTTACTCTATCATACTTC 57.552 37.037 0.00 0.00 0.00 3.01
180 181 6.803642 ACGTGGTTTACTCTATCATACTTCC 58.196 40.000 0.00 0.00 0.00 3.46
181 182 6.183360 ACGTGGTTTACTCTATCATACTTCCC 60.183 42.308 0.00 0.00 0.00 3.97
182 183 6.522946 GTGGTTTACTCTATCATACTTCCCC 58.477 44.000 0.00 0.00 0.00 4.81
183 184 6.326843 GTGGTTTACTCTATCATACTTCCCCT 59.673 42.308 0.00 0.00 0.00 4.79
184 185 7.508296 GTGGTTTACTCTATCATACTTCCCCTA 59.492 40.741 0.00 0.00 0.00 3.53
185 186 8.069356 TGGTTTACTCTATCATACTTCCCCTAA 58.931 37.037 0.00 0.00 0.00 2.69
186 187 8.931568 GGTTTACTCTATCATACTTCCCCTAAA 58.068 37.037 0.00 0.00 0.00 1.85
187 188 9.761504 GTTTACTCTATCATACTTCCCCTAAAC 57.238 37.037 0.00 0.00 0.00 2.01
188 189 6.997942 ACTCTATCATACTTCCCCTAAACC 57.002 41.667 0.00 0.00 0.00 3.27
189 190 6.449956 ACTCTATCATACTTCCCCTAAACCA 58.550 40.000 0.00 0.00 0.00 3.67
190 191 6.326843 ACTCTATCATACTTCCCCTAAACCAC 59.673 42.308 0.00 0.00 0.00 4.16
191 192 3.899052 TCATACTTCCCCTAAACCACG 57.101 47.619 0.00 0.00 0.00 4.94
192 193 3.443052 TCATACTTCCCCTAAACCACGA 58.557 45.455 0.00 0.00 0.00 4.35
193 194 4.035112 TCATACTTCCCCTAAACCACGAT 58.965 43.478 0.00 0.00 0.00 3.73
194 195 4.100498 TCATACTTCCCCTAAACCACGATC 59.900 45.833 0.00 0.00 0.00 3.69
195 196 2.547990 ACTTCCCCTAAACCACGATCT 58.452 47.619 0.00 0.00 0.00 2.75
196 197 2.910977 ACTTCCCCTAAACCACGATCTT 59.089 45.455 0.00 0.00 0.00 2.40
197 198 3.270877 CTTCCCCTAAACCACGATCTTG 58.729 50.000 0.00 0.00 0.00 3.02
198 199 1.065709 TCCCCTAAACCACGATCTTGC 60.066 52.381 0.00 0.00 0.00 4.01
199 200 1.379527 CCCTAAACCACGATCTTGCC 58.620 55.000 0.00 0.00 0.00 4.52
200 201 1.006832 CCTAAACCACGATCTTGCCG 58.993 55.000 0.00 0.00 0.00 5.69
201 202 1.674817 CCTAAACCACGATCTTGCCGT 60.675 52.381 0.00 0.00 41.36 5.68
202 203 1.659098 CTAAACCACGATCTTGCCGTC 59.341 52.381 0.00 0.00 38.29 4.79
203 204 1.289109 AAACCACGATCTTGCCGTCG 61.289 55.000 0.00 0.00 43.13 5.12
204 205 3.554692 CCACGATCTTGCCGTCGC 61.555 66.667 0.00 0.00 41.31 5.19
205 206 3.554692 CACGATCTTGCCGTCGCC 61.555 66.667 0.00 0.00 41.31 5.54
216 217 4.072088 CGTCGCCGGAGTTGTTGC 62.072 66.667 5.05 0.00 0.00 4.17
217 218 2.970324 GTCGCCGGAGTTGTTGCA 60.970 61.111 5.05 0.00 0.00 4.08
218 219 2.664851 TCGCCGGAGTTGTTGCAG 60.665 61.111 5.05 0.00 0.00 4.41
219 220 4.389576 CGCCGGAGTTGTTGCAGC 62.390 66.667 5.05 0.00 0.00 5.25
220 221 2.980233 GCCGGAGTTGTTGCAGCT 60.980 61.111 5.05 0.00 0.00 4.24
221 222 2.970974 GCCGGAGTTGTTGCAGCTC 61.971 63.158 5.05 4.72 40.22 4.09
222 223 1.302033 CCGGAGTTGTTGCAGCTCT 60.302 57.895 0.00 0.24 40.65 4.09
223 224 1.294659 CCGGAGTTGTTGCAGCTCTC 61.295 60.000 0.00 14.17 40.65 3.20
224 225 0.601046 CGGAGTTGTTGCAGCTCTCA 60.601 55.000 20.24 2.44 40.65 3.27
225 226 1.818642 GGAGTTGTTGCAGCTCTCAT 58.181 50.000 20.24 0.00 40.65 2.90
226 227 2.157738 GGAGTTGTTGCAGCTCTCATT 58.842 47.619 20.24 0.00 40.65 2.57
227 228 3.338249 GGAGTTGTTGCAGCTCTCATTA 58.662 45.455 20.24 0.00 40.65 1.90
228 229 3.944015 GGAGTTGTTGCAGCTCTCATTAT 59.056 43.478 20.24 0.00 40.65 1.28
229 230 4.397417 GGAGTTGTTGCAGCTCTCATTATT 59.603 41.667 20.24 0.00 40.65 1.40
230 231 5.306532 AGTTGTTGCAGCTCTCATTATTG 57.693 39.130 1.17 0.00 0.00 1.90
231 232 4.763793 AGTTGTTGCAGCTCTCATTATTGT 59.236 37.500 1.17 0.00 0.00 2.71
232 233 4.952262 TGTTGCAGCTCTCATTATTGTC 57.048 40.909 1.17 0.00 0.00 3.18
233 234 3.371898 TGTTGCAGCTCTCATTATTGTCG 59.628 43.478 1.17 0.00 0.00 4.35
234 235 3.251479 TGCAGCTCTCATTATTGTCGT 57.749 42.857 0.00 0.00 0.00 4.34
235 236 3.599343 TGCAGCTCTCATTATTGTCGTT 58.401 40.909 0.00 0.00 0.00 3.85
236 237 3.371898 TGCAGCTCTCATTATTGTCGTTG 59.628 43.478 0.00 0.00 0.00 4.10
237 238 3.372206 GCAGCTCTCATTATTGTCGTTGT 59.628 43.478 0.00 0.00 0.00 3.32
238 239 4.493220 GCAGCTCTCATTATTGTCGTTGTC 60.493 45.833 0.00 0.00 0.00 3.18
239 240 4.627035 CAGCTCTCATTATTGTCGTTGTCA 59.373 41.667 0.00 0.00 0.00 3.58
240 241 4.627467 AGCTCTCATTATTGTCGTTGTCAC 59.373 41.667 0.00 0.00 0.00 3.67
247 248 2.050168 GTCGTTGTCACGGCCGTA 60.050 61.111 33.70 13.96 45.75 4.02
248 249 1.661197 GTCGTTGTCACGGCCGTAA 60.661 57.895 33.70 19.98 45.75 3.18
249 250 1.879562 GTCGTTGTCACGGCCGTAAC 61.880 60.000 33.70 29.25 45.75 2.50
250 251 2.660612 CGTTGTCACGGCCGTAACC 61.661 63.158 33.70 21.34 43.16 2.85
251 252 2.030862 TTGTCACGGCCGTAACCC 59.969 61.111 33.70 18.71 0.00 4.11
252 253 2.804912 TTGTCACGGCCGTAACCCA 61.805 57.895 33.70 21.14 0.00 4.51
253 254 2.433664 GTCACGGCCGTAACCCAG 60.434 66.667 33.70 18.13 0.00 4.45
254 255 2.918802 TCACGGCCGTAACCCAGT 60.919 61.111 33.70 1.55 0.00 4.00
255 256 2.433664 CACGGCCGTAACCCAGTC 60.434 66.667 33.70 0.00 0.00 3.51
256 257 3.698820 ACGGCCGTAACCCAGTCC 61.699 66.667 33.34 0.00 0.00 3.85
257 258 4.807039 CGGCCGTAACCCAGTCCG 62.807 72.222 19.50 0.00 0.00 4.79
260 261 4.807039 CCGTAACCCAGTCCGCGG 62.807 72.222 22.12 22.12 0.00 6.46
261 262 3.751246 CGTAACCCAGTCCGCGGA 61.751 66.667 27.28 27.28 0.00 5.54
262 263 2.125793 GTAACCCAGTCCGCGGAC 60.126 66.667 43.92 43.92 44.86 4.79
263 264 3.384532 TAACCCAGTCCGCGGACC 61.385 66.667 45.66 30.96 45.59 4.46
268 269 4.570663 CAGTCCGCGGACCCGATC 62.571 72.222 45.66 26.44 45.59 3.69
318 319 4.728102 CCCGACGTGGCGCACTAA 62.728 66.667 10.83 0.00 35.87 2.24
319 320 3.475774 CCGACGTGGCGCACTAAC 61.476 66.667 10.83 0.11 31.34 2.34
320 321 2.731721 CGACGTGGCGCACTAACA 60.732 61.111 10.83 0.00 31.34 2.41
321 322 2.092291 CGACGTGGCGCACTAACAT 61.092 57.895 10.83 0.00 31.34 2.71
322 323 1.708027 GACGTGGCGCACTAACATC 59.292 57.895 10.83 0.00 31.34 3.06
323 324 2.009625 GACGTGGCGCACTAACATCG 62.010 60.000 10.83 6.86 31.34 3.84
324 325 2.798501 CGTGGCGCACTAACATCGG 61.799 63.158 10.83 0.00 31.34 4.18
325 326 1.740296 GTGGCGCACTAACATCGGT 60.740 57.895 10.83 0.00 0.00 4.69
326 327 1.447140 TGGCGCACTAACATCGGTC 60.447 57.895 10.83 0.00 0.00 4.79
327 328 2.514013 GGCGCACTAACATCGGTCG 61.514 63.158 10.83 0.00 0.00 4.79
328 329 2.995482 CGCACTAACATCGGTCGC 59.005 61.111 0.00 0.00 0.00 5.19
329 330 1.803922 CGCACTAACATCGGTCGCA 60.804 57.895 0.00 0.00 0.00 5.10
330 331 1.708027 GCACTAACATCGGTCGCAC 59.292 57.895 0.00 0.00 0.00 5.34
331 332 1.693083 GCACTAACATCGGTCGCACC 61.693 60.000 0.00 0.00 34.05 5.01
349 350 4.736896 GTGCTCCGTCACGACCCC 62.737 72.222 0.00 0.00 0.00 4.95
351 352 4.436998 GCTCCGTCACGACCCCAG 62.437 72.222 0.00 0.00 0.00 4.45
352 353 4.436998 CTCCGTCACGACCCCAGC 62.437 72.222 0.00 0.00 0.00 4.85
356 357 3.986006 GTCACGACCCCAGCGACA 61.986 66.667 0.00 0.00 0.00 4.35
357 358 2.994995 TCACGACCCCAGCGACAT 60.995 61.111 0.00 0.00 0.00 3.06
358 359 1.679641 TCACGACCCCAGCGACATA 60.680 57.895 0.00 0.00 0.00 2.29
359 360 1.518572 CACGACCCCAGCGACATAC 60.519 63.158 0.00 0.00 0.00 2.39
360 361 2.278596 CGACCCCAGCGACATACG 60.279 66.667 0.00 0.00 45.66 3.06
369 370 2.353607 CGACATACGCCGAGCTCC 60.354 66.667 8.47 0.00 34.51 4.70
370 371 2.835705 CGACATACGCCGAGCTCCT 61.836 63.158 8.47 0.00 34.51 3.69
371 372 1.437986 GACATACGCCGAGCTCCTT 59.562 57.895 8.47 0.00 0.00 3.36
372 373 0.595310 GACATACGCCGAGCTCCTTC 60.595 60.000 8.47 0.00 0.00 3.46
373 374 1.038130 ACATACGCCGAGCTCCTTCT 61.038 55.000 8.47 0.00 0.00 2.85
374 375 0.318275 CATACGCCGAGCTCCTTCTC 60.318 60.000 8.47 0.00 0.00 2.87
375 376 1.457009 ATACGCCGAGCTCCTTCTCC 61.457 60.000 8.47 0.00 0.00 3.71
376 377 2.831894 TACGCCGAGCTCCTTCTCCA 62.832 60.000 8.47 0.00 0.00 3.86
377 378 2.185608 GCCGAGCTCCTTCTCCAC 59.814 66.667 8.47 0.00 0.00 4.02
378 379 2.896443 CCGAGCTCCTTCTCCACC 59.104 66.667 8.47 0.00 0.00 4.61
379 380 2.492090 CGAGCTCCTTCTCCACCG 59.508 66.667 8.47 0.00 0.00 4.94
380 381 2.896443 GAGCTCCTTCTCCACCGG 59.104 66.667 0.87 0.00 0.00 5.28
381 382 3.378399 GAGCTCCTTCTCCACCGGC 62.378 68.421 0.00 0.00 0.00 6.13
382 383 4.821589 GCTCCTTCTCCACCGGCG 62.822 72.222 0.00 0.00 0.00 6.46
383 384 3.068691 CTCCTTCTCCACCGGCGA 61.069 66.667 9.30 0.00 0.00 5.54
384 385 3.358076 CTCCTTCTCCACCGGCGAC 62.358 68.421 9.30 0.00 0.00 5.19
385 386 3.691342 CCTTCTCCACCGGCGACA 61.691 66.667 9.30 0.00 0.00 4.35
386 387 2.432628 CTTCTCCACCGGCGACAC 60.433 66.667 9.30 0.00 0.00 3.67
387 388 3.220999 CTTCTCCACCGGCGACACA 62.221 63.158 9.30 0.00 0.00 3.72
388 389 3.509137 TTCTCCACCGGCGACACAC 62.509 63.158 9.30 0.00 0.00 3.82
491 492 8.512138 CAACTATCTTCCGTAAAAGAAACCATT 58.488 33.333 0.00 0.00 38.69 3.16
492 493 8.040716 ACTATCTTCCGTAAAAGAAACCATTG 57.959 34.615 0.00 0.00 38.69 2.82
493 494 7.881232 ACTATCTTCCGTAAAAGAAACCATTGA 59.119 33.333 0.00 0.00 38.69 2.57
494 495 7.703058 ATCTTCCGTAAAAGAAACCATTGAT 57.297 32.000 0.00 0.00 38.69 2.57
495 496 7.141100 TCTTCCGTAAAAGAAACCATTGATC 57.859 36.000 0.00 0.00 32.42 2.92
496 497 6.940298 TCTTCCGTAAAAGAAACCATTGATCT 59.060 34.615 0.00 0.00 32.42 2.75
497 498 6.494893 TCCGTAAAAGAAACCATTGATCTG 57.505 37.500 0.00 0.00 0.00 2.90
498 499 6.234920 TCCGTAAAAGAAACCATTGATCTGA 58.765 36.000 0.00 0.00 0.00 3.27
512 513 6.996879 CCATTGATCTGATAATCTCAGGTGTT 59.003 38.462 2.64 0.00 45.66 3.32
513 514 8.152898 CCATTGATCTGATAATCTCAGGTGTTA 58.847 37.037 2.64 0.00 45.66 2.41
514 515 9.722184 CATTGATCTGATAATCTCAGGTGTTAT 57.278 33.333 2.64 0.00 45.66 1.89
527 528 7.615403 TCTCAGGTGTTATATATGGCATCTTC 58.385 38.462 1.65 0.00 0.00 2.87
560 561 5.408880 ACTTTCCTACTAAGAGCACCTTC 57.591 43.478 0.00 0.00 36.34 3.46
572 573 5.275067 AGAGCACCTTCTGATGAGAATAC 57.725 43.478 0.00 0.00 37.58 1.89
650 658 2.141535 AGCTTTATCGTCGCCTGATC 57.858 50.000 0.00 0.00 0.00 2.92
775 783 1.736645 CGTGCCCTAGACAACGGTG 60.737 63.158 0.00 0.00 0.00 4.94
843 851 7.705325 AGATGCTGCAATCTAATCATGTTTTTC 59.295 33.333 6.36 0.00 35.09 2.29
844 852 6.101332 TGCTGCAATCTAATCATGTTTTTCC 58.899 36.000 0.00 0.00 0.00 3.13
845 853 6.071221 TGCTGCAATCTAATCATGTTTTTCCT 60.071 34.615 0.00 0.00 0.00 3.36
846 854 6.815142 GCTGCAATCTAATCATGTTTTTCCTT 59.185 34.615 0.00 0.00 0.00 3.36
847 855 7.332678 GCTGCAATCTAATCATGTTTTTCCTTT 59.667 33.333 0.00 0.00 0.00 3.11
848 856 8.761575 TGCAATCTAATCATGTTTTTCCTTTC 57.238 30.769 0.00 0.00 0.00 2.62
849 857 8.587608 TGCAATCTAATCATGTTTTTCCTTTCT 58.412 29.630 0.00 0.00 0.00 2.52
850 858 9.428097 GCAATCTAATCATGTTTTTCCTTTCTT 57.572 29.630 0.00 0.00 0.00 2.52
857 865 9.889128 AATCATGTTTTTCCTTTCTTTCTTTCA 57.111 25.926 0.00 0.00 0.00 2.69
858 866 9.889128 ATCATGTTTTTCCTTTCTTTCTTTCAA 57.111 25.926 0.00 0.00 0.00 2.69
859 867 9.369904 TCATGTTTTTCCTTTCTTTCTTTCAAG 57.630 29.630 0.00 0.00 0.00 3.02
860 868 7.595311 TGTTTTTCCTTTCTTTCTTTCAAGC 57.405 32.000 0.00 0.00 0.00 4.01
861 869 7.158021 TGTTTTTCCTTTCTTTCTTTCAAGCA 58.842 30.769 0.00 0.00 0.00 3.91
862 870 7.117667 TGTTTTTCCTTTCTTTCTTTCAAGCAC 59.882 33.333 0.00 0.00 0.00 4.40
863 871 4.918810 TCCTTTCTTTCTTTCAAGCACC 57.081 40.909 0.00 0.00 0.00 5.01
864 872 4.277476 TCCTTTCTTTCTTTCAAGCACCA 58.723 39.130 0.00 0.00 0.00 4.17
865 873 4.097892 TCCTTTCTTTCTTTCAAGCACCAC 59.902 41.667 0.00 0.00 0.00 4.16
866 874 4.142182 CCTTTCTTTCTTTCAAGCACCACA 60.142 41.667 0.00 0.00 0.00 4.17
898 927 8.530311 ACCACAAATAATTCATCTGTGCAAATA 58.470 29.630 0.00 0.00 36.82 1.40
1239 1299 4.500116 GACGGGTCGCTGCTCCTC 62.500 72.222 0.00 0.00 0.00 3.71
1437 1505 1.730451 GAGCCTGCCTACTCCGACTC 61.730 65.000 0.00 0.00 0.00 3.36
1522 1610 0.594602 TGCATGCTGAAACTGTGAGC 59.405 50.000 20.33 0.00 0.00 4.26
1523 1611 0.594602 GCATGCTGAAACTGTGAGCA 59.405 50.000 11.37 10.65 46.32 4.26
1526 1614 0.594602 TGCTGAAACTGTGAGCATGC 59.405 50.000 10.51 10.51 37.81 4.06
1740 1830 6.361481 CCATCGCTCAAAGCAATACATAATTG 59.639 38.462 0.00 0.00 46.62 2.32
1741 1831 6.435430 TCGCTCAAAGCAATACATAATTGT 57.565 33.333 0.00 0.00 45.78 2.71
1742 1832 6.851609 TCGCTCAAAGCAATACATAATTGTT 58.148 32.000 0.00 0.00 45.78 2.83
1743 1833 7.980062 TCGCTCAAAGCAATACATAATTGTTA 58.020 30.769 0.00 0.00 45.78 2.41
1744 1834 8.620416 TCGCTCAAAGCAATACATAATTGTTAT 58.380 29.630 0.00 0.00 45.78 1.89
1745 1835 9.236691 CGCTCAAAGCAATACATAATTGTTATT 57.763 29.630 0.00 0.00 45.78 1.40
1795 1885 4.082300 TGCCATTGCATTACAACCAACTAG 60.082 41.667 0.00 0.00 44.23 2.57
1802 1892 4.156008 GCATTACAACCAACTAGTCCCAAG 59.844 45.833 0.00 0.00 0.00 3.61
1807 1897 4.040095 ACAACCAACTAGTCCCAAGTACTC 59.960 45.833 0.00 0.00 0.00 2.59
1808 1898 2.824341 ACCAACTAGTCCCAAGTACTCG 59.176 50.000 0.00 0.00 0.00 4.18
1809 1899 2.824341 CCAACTAGTCCCAAGTACTCGT 59.176 50.000 0.00 0.00 0.00 4.18
1810 1900 3.119566 CCAACTAGTCCCAAGTACTCGTC 60.120 52.174 0.00 0.00 0.00 4.20
1811 1901 3.430042 ACTAGTCCCAAGTACTCGTCA 57.570 47.619 0.00 0.00 0.00 4.35
1812 1902 3.759581 ACTAGTCCCAAGTACTCGTCAA 58.240 45.455 0.00 0.00 0.00 3.18
1813 1903 4.342359 ACTAGTCCCAAGTACTCGTCAAT 58.658 43.478 0.00 0.00 0.00 2.57
1814 1904 4.771054 ACTAGTCCCAAGTACTCGTCAATT 59.229 41.667 0.00 0.00 0.00 2.32
1815 1905 4.618920 AGTCCCAAGTACTCGTCAATTT 57.381 40.909 0.00 0.00 0.00 1.82
1816 1906 5.733620 AGTCCCAAGTACTCGTCAATTTA 57.266 39.130 0.00 0.00 0.00 1.40
1817 1907 6.295719 AGTCCCAAGTACTCGTCAATTTAT 57.704 37.500 0.00 0.00 0.00 1.40
1818 1908 6.708285 AGTCCCAAGTACTCGTCAATTTATT 58.292 36.000 0.00 0.00 0.00 1.40
1819 1909 6.594159 AGTCCCAAGTACTCGTCAATTTATTG 59.406 38.462 0.00 0.00 39.10 1.90
1820 1910 6.592607 GTCCCAAGTACTCGTCAATTTATTGA 59.407 38.462 0.00 1.12 43.94 2.57
1854 1944 2.816087 CACTGGTGCTTAAGAATGCAGT 59.184 45.455 6.67 0.00 40.06 4.40
1855 1945 2.816087 ACTGGTGCTTAAGAATGCAGTG 59.184 45.455 6.67 0.00 40.06 3.66
1856 1946 2.161855 TGGTGCTTAAGAATGCAGTGG 58.838 47.619 6.67 0.00 40.06 4.00
1857 1947 1.474077 GGTGCTTAAGAATGCAGTGGG 59.526 52.381 6.67 0.00 40.06 4.61
1859 1949 2.421424 GTGCTTAAGAATGCAGTGGGAG 59.579 50.000 6.67 0.00 40.06 4.30
1861 1951 3.263170 TGCTTAAGAATGCAGTGGGAGTA 59.737 43.478 6.67 0.00 34.84 2.59
1863 1953 4.274459 GCTTAAGAATGCAGTGGGAGTATG 59.726 45.833 6.67 0.00 0.00 2.39
1865 1955 6.553953 TTAAGAATGCAGTGGGAGTATGTA 57.446 37.500 0.00 0.00 0.00 2.29
1866 1956 4.408182 AGAATGCAGTGGGAGTATGTAC 57.592 45.455 0.00 0.00 0.00 2.90
1868 1958 2.247699 TGCAGTGGGAGTATGTACCT 57.752 50.000 0.00 0.00 0.00 3.08
1869 1959 3.391799 TGCAGTGGGAGTATGTACCTA 57.608 47.619 0.00 0.00 0.00 3.08
1871 1961 4.295201 TGCAGTGGGAGTATGTACCTAAT 58.705 43.478 0.00 0.00 0.00 1.73
1872 1962 4.344102 TGCAGTGGGAGTATGTACCTAATC 59.656 45.833 0.00 0.00 0.00 1.75
1873 1963 4.589374 GCAGTGGGAGTATGTACCTAATCT 59.411 45.833 5.76 0.00 0.00 2.40
1874 1964 5.070580 GCAGTGGGAGTATGTACCTAATCTT 59.929 44.000 5.76 0.00 0.00 2.40
1876 1966 7.210873 CAGTGGGAGTATGTACCTAATCTTTC 58.789 42.308 5.76 0.00 0.00 2.62
1877 1967 6.040616 AGTGGGAGTATGTACCTAATCTTTCG 59.959 42.308 5.76 0.00 0.00 3.46
1878 1968 5.895534 TGGGAGTATGTACCTAATCTTTCGT 59.104 40.000 5.76 0.00 0.00 3.85
1879 1969 6.040166 TGGGAGTATGTACCTAATCTTTCGTC 59.960 42.308 5.76 0.00 0.00 4.20
1880 1970 6.040166 GGGAGTATGTACCTAATCTTTCGTCA 59.960 42.308 5.76 0.00 0.00 4.35
1881 1971 7.417116 GGGAGTATGTACCTAATCTTTCGTCAA 60.417 40.741 5.76 0.00 0.00 3.18
1882 1972 7.977853 GGAGTATGTACCTAATCTTTCGTCAAA 59.022 37.037 5.76 0.00 0.00 2.69
1883 1973 9.530633 GAGTATGTACCTAATCTTTCGTCAAAT 57.469 33.333 0.00 0.00 0.00 2.32
1892 1982 8.821894 CCTAATCTTTCGTCAAATAAAGAGAGG 58.178 37.037 11.26 11.26 43.06 3.69
1901 1991 6.018669 CGTCAAATAAAGAGAGGGAATGTAGC 60.019 42.308 0.00 0.00 0.00 3.58
1905 1995 3.902881 AAGAGAGGGAATGTAGCACTG 57.097 47.619 0.00 0.00 0.00 3.66
1998 2088 5.802956 CACACTCTGCTTCTACTAGCTTTAC 59.197 44.000 0.00 0.00 41.76 2.01
1999 2089 5.712917 ACACTCTGCTTCTACTAGCTTTACT 59.287 40.000 0.00 0.00 41.76 2.24
2000 2090 6.885376 ACACTCTGCTTCTACTAGCTTTACTA 59.115 38.462 0.00 0.00 41.76 1.82
2035 2136 0.530288 TGCACGATACAGCTGTAGCA 59.470 50.000 34.11 29.90 45.16 3.49
2121 2222 2.600420 CTGGTGACGAGTTCAATCATCG 59.400 50.000 0.00 0.00 42.04 3.84
2223 2325 1.742510 GGCATTGGCATGTGGTTGC 60.743 57.895 5.17 0.00 43.71 4.17
2264 2366 6.992063 AGAACCTCTTAGTTGTATTGCATG 57.008 37.500 0.00 0.00 0.00 4.06
2330 2432 6.200854 GCCACTTAACTTTTTCAGTGAAATGG 59.799 38.462 18.69 19.16 39.25 3.16
2346 2448 0.106819 ATGGCTGGCTCTGGCTTTAG 60.107 55.000 2.00 0.00 38.73 1.85
2385 2491 4.598406 TCACATATTCACGTGTCATTGC 57.402 40.909 16.51 0.00 34.66 3.56
2389 2495 4.455533 ACATATTCACGTGTCATTGCACTT 59.544 37.500 16.51 0.00 37.24 3.16
2391 2497 6.148645 ACATATTCACGTGTCATTGCACTTAA 59.851 34.615 16.51 0.00 37.24 1.85
2392 2498 5.627499 ATTCACGTGTCATTGCACTTAAT 57.373 34.783 16.51 0.04 37.24 1.40
2395 2501 6.735678 TCACGTGTCATTGCACTTAATATT 57.264 33.333 16.51 0.00 37.24 1.28
2396 2502 7.835634 TCACGTGTCATTGCACTTAATATTA 57.164 32.000 16.51 0.00 37.24 0.98
2398 2504 8.888716 TCACGTGTCATTGCACTTAATATTATT 58.111 29.630 16.51 0.00 37.24 1.40
2422 2528 9.609346 ATTAAAGAAAAGATAAAGCTAGCGGTA 57.391 29.630 9.55 5.96 0.00 4.02
2431 2537 1.096416 AGCTAGCGGTATATCTCGGC 58.904 55.000 9.55 0.00 0.00 5.54
2433 2539 2.093075 AGCTAGCGGTATATCTCGGCTA 60.093 50.000 9.55 14.53 40.75 3.93
2443 2549 6.267070 GGTATATCTCGGCTAGTGCTTTATC 58.733 44.000 0.00 0.00 39.59 1.75
2444 2550 6.095720 GGTATATCTCGGCTAGTGCTTTATCT 59.904 42.308 0.00 0.00 39.59 1.98
2445 2551 7.282675 GGTATATCTCGGCTAGTGCTTTATCTA 59.717 40.741 0.00 0.00 39.59 1.98
2446 2552 7.889873 ATATCTCGGCTAGTGCTTTATCTAT 57.110 36.000 0.00 0.00 39.59 1.98
2447 2553 8.982091 ATATCTCGGCTAGTGCTTTATCTATA 57.018 34.615 0.00 0.00 39.59 1.31
2448 2554 6.745159 TCTCGGCTAGTGCTTTATCTATAG 57.255 41.667 0.00 0.00 39.59 1.31
2449 2555 6.473758 TCTCGGCTAGTGCTTTATCTATAGA 58.526 40.000 4.57 4.57 39.59 1.98
2456 2565 3.995048 GTGCTTTATCTATAGAACGGGGC 59.005 47.826 6.52 8.48 0.00 5.80
2486 2595 6.980978 GCCCATTTTAAGAGAAGAATAAAGCC 59.019 38.462 0.00 0.00 0.00 4.35
2496 2608 1.145738 AGAATAAAGCCGGCATCCCAT 59.854 47.619 31.54 11.20 0.00 4.00
2549 2661 4.581824 ACCACACATGCATATGATTCCTTC 59.418 41.667 12.92 0.00 37.73 3.46
2576 2688 3.750371 TGTTCCATCACCGACTCAAATT 58.250 40.909 0.00 0.00 0.00 1.82
2579 2691 2.017049 CCATCACCGACTCAAATTCCC 58.983 52.381 0.00 0.00 0.00 3.97
2685 2797 1.057275 TGGGGAAAAAGGGCCCAAAC 61.057 55.000 27.56 10.21 46.57 2.93
2695 2807 0.540133 GGGCCCAAACGTTCCCTTTA 60.540 55.000 19.95 0.00 35.87 1.85
2697 2809 1.897133 GGCCCAAACGTTCCCTTTATT 59.103 47.619 0.00 0.00 0.00 1.40
2703 2850 6.482641 GCCCAAACGTTCCCTTTATTTTAAAA 59.517 34.615 0.00 2.51 0.00 1.52
2755 2902 9.350357 CAAATTCTGTTTTCTCTGATTACATGG 57.650 33.333 0.00 0.00 0.00 3.66
2831 2978 2.558795 AGCACACATCTACAACGAGACT 59.441 45.455 0.00 0.00 0.00 3.24
2879 3026 3.411517 CAATCGGGGTGCCCTCCT 61.412 66.667 7.26 0.00 42.67 3.69
2932 3079 2.041819 GGACCTCCAGACCCCGAT 60.042 66.667 0.00 0.00 35.64 4.18
2945 3092 1.090052 CCCCGATCGCCTTTGAGAAC 61.090 60.000 10.32 0.00 0.00 3.01
3011 3158 1.122019 ACCAGGAGCTCTTCAACGGT 61.122 55.000 14.64 6.72 0.00 4.83
3020 3167 3.491598 CTTCAACGGTGGGGCCACT 62.492 63.158 6.53 0.00 45.52 4.00
3043 3190 0.759346 CCCCTGGTCCAGTACTATGC 59.241 60.000 17.85 0.00 0.00 3.14
3115 3262 0.814457 GGAGATATCTCGCCGCTCAT 59.186 55.000 23.30 0.00 43.76 2.90
3336 3485 6.971527 TTCGACAATATATGAACCGTTTGT 57.028 33.333 0.00 0.00 0.00 2.83
3337 3486 6.339194 TCGACAATATATGAACCGTTTGTG 57.661 37.500 0.00 0.00 0.00 3.33
3338 3487 5.870433 TCGACAATATATGAACCGTTTGTGT 59.130 36.000 0.00 0.00 0.00 3.72
3339 3488 6.035220 TCGACAATATATGAACCGTTTGTGTC 59.965 38.462 0.00 0.00 0.00 3.67
3340 3489 6.183360 CGACAATATATGAACCGTTTGTGTCA 60.183 38.462 0.00 0.00 33.02 3.58
3341 3490 7.465379 CGACAATATATGAACCGTTTGTGTCAT 60.465 37.037 0.00 0.00 33.02 3.06
3342 3491 8.050778 ACAATATATGAACCGTTTGTGTCATT 57.949 30.769 0.00 0.00 0.00 2.57
3343 3492 7.967854 ACAATATATGAACCGTTTGTGTCATTG 59.032 33.333 0.00 0.00 0.00 2.82
3396 3545 9.999660 ATGTAGTACTTACGAGAGAATAGATGA 57.000 33.333 0.00 0.00 34.87 2.92
3409 3558 8.088463 AGAGAATAGATGATTGGAAGACAAGT 57.912 34.615 0.00 0.00 43.48 3.16
3419 3568 8.213518 TGATTGGAAGACAAGTCATATAAAGC 57.786 34.615 2.72 0.00 43.48 3.51
3421 3570 7.849804 TTGGAAGACAAGTCATATAAAGCTC 57.150 36.000 2.72 0.00 33.18 4.09
3433 3626 2.649331 TAAAGCTCTTTCTCCCGACG 57.351 50.000 0.00 0.00 34.23 5.12
3442 3635 3.680786 CTCCCGACGTCACCAGCA 61.681 66.667 17.16 0.00 0.00 4.41
3446 3639 2.356313 CGACGTCACCAGCAAGCT 60.356 61.111 17.16 0.00 0.00 3.74
3468 3662 2.366167 ATTCGCCTCCCCTCAGCT 60.366 61.111 0.00 0.00 0.00 4.24
3470 3664 0.691078 ATTCGCCTCCCCTCAGCTTA 60.691 55.000 0.00 0.00 0.00 3.09
3491 3685 4.778415 CTCCGGCGACCAGTGACG 62.778 72.222 9.30 0.00 0.00 4.35
3520 3714 1.488705 ATCCTGGTGCCTCCGTTTCA 61.489 55.000 0.00 0.00 39.52 2.69
3538 3732 7.335422 TCCGTTTCAGTTAGTAGTCTAGGTTAG 59.665 40.741 0.00 0.00 0.00 2.34
3560 3754 4.139038 GGTTTTTGTAGTCCTTGCAGGTA 58.861 43.478 0.00 0.00 36.53 3.08
3561 3755 4.765339 GGTTTTTGTAGTCCTTGCAGGTAT 59.235 41.667 0.00 0.00 36.53 2.73
3606 3801 8.622157 ACGATTCTTCTTCGAGTTTATCATCTA 58.378 33.333 0.00 0.00 39.81 1.98
3649 3854 2.123854 TAGCCGATGGAGCTCCGT 60.124 61.111 27.92 27.92 41.83 4.69
3663 3868 4.407818 GAGCTCCGTCGTAGATTCATATG 58.592 47.826 0.87 0.00 40.67 1.78
3751 3956 6.603997 TCAAATATATGCAAGGGTTTAACGGT 59.396 34.615 0.00 0.00 0.00 4.83
3778 3983 2.046314 GGCTTCAGGGCGCTTGTA 60.046 61.111 7.64 0.00 0.00 2.41
3790 3995 0.036765 CGCTTGTACTTAGGGGCACA 60.037 55.000 0.00 0.00 0.00 4.57
3819 4024 1.372499 CTTTCCGGCTGTCGTCGAA 60.372 57.895 0.00 0.00 41.73 3.71
3829 4034 2.470821 CTGTCGTCGAAAAGGTCAAGT 58.529 47.619 0.00 0.00 0.00 3.16
3831 4036 2.100252 TGTCGTCGAAAAGGTCAAGTCT 59.900 45.455 0.00 0.00 0.00 3.24
3842 4047 2.166664 AGGTCAAGTCTGCTCCGATTAC 59.833 50.000 0.00 0.00 0.00 1.89
3860 4065 2.594592 GGAGCAGCCACAACGGTT 60.595 61.111 0.00 0.00 36.97 4.44
3875 4080 1.273455 CGGTTTGTCGGTGACTCGTC 61.273 60.000 0.00 0.00 33.15 4.20
3876 4081 0.031721 GGTTTGTCGGTGACTCGTCT 59.968 55.000 0.00 0.00 33.15 4.18
3950 5047 4.545823 TGTTCGAGCTGGTAAACTTTTG 57.454 40.909 0.00 0.00 0.00 2.44
3953 5050 5.761234 TGTTCGAGCTGGTAAACTTTTGTAT 59.239 36.000 0.00 0.00 0.00 2.29
4007 5104 7.732593 AGGCATTAAAATAAGGGCATATAACCA 59.267 33.333 10.27 0.00 0.00 3.67
4035 5132 5.296748 TGGAACAAGTTAACCTAACGTACC 58.703 41.667 0.88 0.00 43.29 3.34
4114 5214 1.736645 GTCCCATCCGTGTGTCGTG 60.737 63.158 0.00 0.00 37.94 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.319125 TTGCCCGGCAAAATTTCGTC 60.319 50.000 22.85 0.00 45.96 4.20
1 2 1.742768 TTGCCCGGCAAAATTTCGT 59.257 47.368 22.85 0.00 45.96 3.85
2 3 4.663444 TTGCCCGGCAAAATTTCG 57.337 50.000 22.85 0.00 45.96 3.46
9 10 4.577246 GCGTTTGTTGCCCGGCAA 62.577 61.111 21.31 21.31 46.80 4.52
16 17 3.680786 GGGGAGGGCGTTTGTTGC 61.681 66.667 0.00 0.00 0.00 4.17
17 18 2.989253 GGGGGAGGGCGTTTGTTG 60.989 66.667 0.00 0.00 0.00 3.33
18 19 4.653888 CGGGGGAGGGCGTTTGTT 62.654 66.667 0.00 0.00 0.00 2.83
38 39 4.736896 AAGGCCTCGGCGTTCGTC 62.737 66.667 5.23 0.00 44.46 4.20
39 40 3.819877 AAAAGGCCTCGGCGTTCGT 62.820 57.895 5.23 5.27 46.55 3.85
40 41 2.508755 GAAAAAGGCCTCGGCGTTCG 62.509 60.000 5.23 0.00 46.55 3.95
41 42 1.209383 GAAAAAGGCCTCGGCGTTC 59.791 57.895 5.23 1.72 46.55 3.95
43 44 1.671379 GAGAAAAAGGCCTCGGCGT 60.671 57.895 5.23 0.00 43.06 5.68
44 45 1.362406 GAGAGAAAAAGGCCTCGGCG 61.362 60.000 5.23 0.00 43.06 6.46
45 46 0.035915 AGAGAGAAAAAGGCCTCGGC 60.036 55.000 5.23 0.00 41.06 5.54
46 47 2.498078 ACTAGAGAGAAAAAGGCCTCGG 59.502 50.000 5.23 0.00 34.75 4.63
47 48 3.878160 ACTAGAGAGAAAAAGGCCTCG 57.122 47.619 5.23 0.00 34.75 4.63
48 49 6.879400 TGAATACTAGAGAGAAAAAGGCCTC 58.121 40.000 5.23 0.00 0.00 4.70
49 50 6.875972 TGAATACTAGAGAGAAAAAGGCCT 57.124 37.500 0.00 0.00 0.00 5.19
50 51 7.106890 AGTTGAATACTAGAGAGAAAAAGGCC 58.893 38.462 0.00 0.00 34.56 5.19
51 52 7.009723 CGAGTTGAATACTAGAGAGAAAAAGGC 59.990 40.741 0.00 0.00 37.17 4.35
52 53 7.489757 CCGAGTTGAATACTAGAGAGAAAAAGG 59.510 40.741 0.00 0.00 37.17 3.11
53 54 7.009723 GCCGAGTTGAATACTAGAGAGAAAAAG 59.990 40.741 0.00 0.00 37.17 2.27
54 55 6.812160 GCCGAGTTGAATACTAGAGAGAAAAA 59.188 38.462 0.00 0.00 37.17 1.94
55 56 6.153000 AGCCGAGTTGAATACTAGAGAGAAAA 59.847 38.462 0.00 0.00 37.17 2.29
56 57 5.652891 AGCCGAGTTGAATACTAGAGAGAAA 59.347 40.000 0.00 0.00 37.17 2.52
57 58 5.194432 AGCCGAGTTGAATACTAGAGAGAA 58.806 41.667 0.00 0.00 37.17 2.87
58 59 4.783055 AGCCGAGTTGAATACTAGAGAGA 58.217 43.478 0.00 0.00 37.17 3.10
59 60 4.576873 TGAGCCGAGTTGAATACTAGAGAG 59.423 45.833 0.00 0.00 37.17 3.20
60 61 4.524053 TGAGCCGAGTTGAATACTAGAGA 58.476 43.478 0.00 0.00 37.17 3.10
61 62 4.902443 TGAGCCGAGTTGAATACTAGAG 57.098 45.455 0.00 0.00 37.17 2.43
62 63 5.241064 GGTATGAGCCGAGTTGAATACTAGA 59.759 44.000 0.00 0.00 37.17 2.43
63 64 5.009710 TGGTATGAGCCGAGTTGAATACTAG 59.990 44.000 0.00 0.00 37.17 2.57
64 65 4.891168 TGGTATGAGCCGAGTTGAATACTA 59.109 41.667 0.00 0.00 37.17 1.82
65 66 3.704566 TGGTATGAGCCGAGTTGAATACT 59.295 43.478 0.00 0.00 40.71 2.12
66 67 3.802685 GTGGTATGAGCCGAGTTGAATAC 59.197 47.826 0.00 0.00 0.00 1.89
67 68 3.490249 CGTGGTATGAGCCGAGTTGAATA 60.490 47.826 0.00 0.00 0.00 1.75
68 69 2.738643 CGTGGTATGAGCCGAGTTGAAT 60.739 50.000 0.00 0.00 0.00 2.57
69 70 1.403647 CGTGGTATGAGCCGAGTTGAA 60.404 52.381 0.00 0.00 0.00 2.69
70 71 0.172578 CGTGGTATGAGCCGAGTTGA 59.827 55.000 0.00 0.00 0.00 3.18
71 72 0.108804 ACGTGGTATGAGCCGAGTTG 60.109 55.000 0.00 0.00 0.00 3.16
72 73 0.172803 GACGTGGTATGAGCCGAGTT 59.827 55.000 0.00 0.00 0.00 3.01
73 74 0.963856 TGACGTGGTATGAGCCGAGT 60.964 55.000 0.00 0.00 0.00 4.18
74 75 0.248661 CTGACGTGGTATGAGCCGAG 60.249 60.000 0.00 0.00 0.00 4.63
75 76 1.663379 CCTGACGTGGTATGAGCCGA 61.663 60.000 0.00 0.00 0.00 5.54
76 77 1.226974 CCTGACGTGGTATGAGCCG 60.227 63.158 0.00 0.00 0.00 5.52
77 78 1.521681 GCCTGACGTGGTATGAGCC 60.522 63.158 0.00 0.00 0.00 4.70
78 79 0.744874 TAGCCTGACGTGGTATGAGC 59.255 55.000 0.00 0.00 0.00 4.26
79 80 1.749063 TGTAGCCTGACGTGGTATGAG 59.251 52.381 0.00 0.00 0.00 2.90
80 81 1.842052 TGTAGCCTGACGTGGTATGA 58.158 50.000 0.00 0.00 0.00 2.15
81 82 2.665649 TTGTAGCCTGACGTGGTATG 57.334 50.000 0.00 0.00 0.00 2.39
82 83 2.565834 AGTTTGTAGCCTGACGTGGTAT 59.434 45.455 0.00 0.00 0.00 2.73
83 84 1.965643 AGTTTGTAGCCTGACGTGGTA 59.034 47.619 0.00 0.00 0.00 3.25
84 85 0.756903 AGTTTGTAGCCTGACGTGGT 59.243 50.000 0.00 0.00 0.00 4.16
85 86 1.148310 CAGTTTGTAGCCTGACGTGG 58.852 55.000 0.00 0.00 0.00 4.94
86 87 1.148310 CCAGTTTGTAGCCTGACGTG 58.852 55.000 0.00 0.00 0.00 4.49
87 88 1.000955 CTCCAGTTTGTAGCCTGACGT 59.999 52.381 0.00 0.00 0.00 4.34
88 89 1.673033 CCTCCAGTTTGTAGCCTGACG 60.673 57.143 0.00 0.00 0.00 4.35
89 90 1.946283 GCCTCCAGTTTGTAGCCTGAC 60.946 57.143 0.00 0.00 0.00 3.51
90 91 0.324943 GCCTCCAGTTTGTAGCCTGA 59.675 55.000 0.00 0.00 0.00 3.86
91 92 1.021390 CGCCTCCAGTTTGTAGCCTG 61.021 60.000 0.00 0.00 0.00 4.85
92 93 1.296715 CGCCTCCAGTTTGTAGCCT 59.703 57.895 0.00 0.00 0.00 4.58
93 94 2.399356 GCGCCTCCAGTTTGTAGCC 61.399 63.158 0.00 0.00 0.00 3.93
94 95 1.671054 TGCGCCTCCAGTTTGTAGC 60.671 57.895 4.18 0.00 0.00 3.58
95 96 0.602638 TGTGCGCCTCCAGTTTGTAG 60.603 55.000 4.18 0.00 0.00 2.74
96 97 0.882927 GTGTGCGCCTCCAGTTTGTA 60.883 55.000 4.18 0.00 0.00 2.41
97 98 2.186826 GTGTGCGCCTCCAGTTTGT 61.187 57.895 4.18 0.00 0.00 2.83
98 99 2.186160 TGTGTGCGCCTCCAGTTTG 61.186 57.895 4.18 0.00 0.00 2.93
99 100 2.186826 GTGTGTGCGCCTCCAGTTT 61.187 57.895 4.18 0.00 0.00 2.66
100 101 2.591715 GTGTGTGCGCCTCCAGTT 60.592 61.111 4.18 0.00 0.00 3.16
101 102 4.969196 CGTGTGTGCGCCTCCAGT 62.969 66.667 4.18 0.00 0.00 4.00
109 110 4.589700 GTGGTGTGCGTGTGTGCG 62.590 66.667 0.00 0.00 37.81 5.34
110 111 3.504273 TGTGGTGTGCGTGTGTGC 61.504 61.111 0.00 0.00 0.00 4.57
111 112 2.394563 TGTGTGGTGTGCGTGTGTG 61.395 57.895 0.00 0.00 0.00 3.82
112 113 2.046796 TGTGTGGTGTGCGTGTGT 60.047 55.556 0.00 0.00 0.00 3.72
113 114 2.403186 GTGTGTGGTGTGCGTGTG 59.597 61.111 0.00 0.00 0.00 3.82
114 115 3.192230 CGTGTGTGGTGTGCGTGT 61.192 61.111 0.00 0.00 0.00 4.49
115 116 4.589700 GCGTGTGTGGTGTGCGTG 62.590 66.667 0.00 0.00 0.00 5.34
117 118 4.589700 GTGCGTGTGTGGTGTGCG 62.590 66.667 0.00 0.00 0.00 5.34
118 119 3.504273 TGTGCGTGTGTGGTGTGC 61.504 61.111 0.00 0.00 0.00 4.57
119 120 2.403186 GTGTGCGTGTGTGGTGTG 59.597 61.111 0.00 0.00 0.00 3.82
120 121 3.192230 CGTGTGCGTGTGTGGTGT 61.192 61.111 0.00 0.00 0.00 4.16
121 122 4.589700 GCGTGTGCGTGTGTGGTG 62.590 66.667 0.00 0.00 40.81 4.17
131 132 1.266842 CGTATGTATGTGTGCGTGTGC 60.267 52.381 0.00 0.00 43.20 4.57
132 133 1.266842 GCGTATGTATGTGTGCGTGTG 60.267 52.381 0.00 0.00 0.00 3.82
133 134 0.996462 GCGTATGTATGTGTGCGTGT 59.004 50.000 0.00 0.00 0.00 4.49
134 135 0.300491 GGCGTATGTATGTGTGCGTG 59.700 55.000 0.00 0.00 0.00 5.34
135 136 0.174845 AGGCGTATGTATGTGTGCGT 59.825 50.000 0.00 0.00 0.00 5.24
136 137 2.128367 TAGGCGTATGTATGTGTGCG 57.872 50.000 0.00 0.00 0.00 5.34
137 138 2.217847 CGTTAGGCGTATGTATGTGTGC 59.782 50.000 0.00 0.00 35.54 4.57
151 152 5.002464 TGATAGAGTAAACCACGTTAGGC 57.998 43.478 0.00 0.00 0.00 3.93
152 153 7.938715 AGTATGATAGAGTAAACCACGTTAGG 58.061 38.462 0.00 0.00 0.00 2.69
153 154 9.448294 GAAGTATGATAGAGTAAACCACGTTAG 57.552 37.037 0.00 0.00 0.00 2.34
154 155 8.408601 GGAAGTATGATAGAGTAAACCACGTTA 58.591 37.037 0.00 0.00 0.00 3.18
155 156 7.263496 GGAAGTATGATAGAGTAAACCACGTT 58.737 38.462 0.00 0.00 0.00 3.99
156 157 6.183360 GGGAAGTATGATAGAGTAAACCACGT 60.183 42.308 0.00 0.00 0.00 4.49
157 158 6.214399 GGGAAGTATGATAGAGTAAACCACG 58.786 44.000 0.00 0.00 0.00 4.94
158 159 6.326843 AGGGGAAGTATGATAGAGTAAACCAC 59.673 42.308 0.00 0.00 0.00 4.16
159 160 6.449956 AGGGGAAGTATGATAGAGTAAACCA 58.550 40.000 0.00 0.00 0.00 3.67
160 161 6.997942 AGGGGAAGTATGATAGAGTAAACC 57.002 41.667 0.00 0.00 0.00 3.27
161 162 9.761504 GTTTAGGGGAAGTATGATAGAGTAAAC 57.238 37.037 0.00 0.00 0.00 2.01
162 163 8.931568 GGTTTAGGGGAAGTATGATAGAGTAAA 58.068 37.037 0.00 0.00 0.00 2.01
163 164 8.069356 TGGTTTAGGGGAAGTATGATAGAGTAA 58.931 37.037 0.00 0.00 0.00 2.24
164 165 7.508296 GTGGTTTAGGGGAAGTATGATAGAGTA 59.492 40.741 0.00 0.00 0.00 2.59
165 166 6.326843 GTGGTTTAGGGGAAGTATGATAGAGT 59.673 42.308 0.00 0.00 0.00 3.24
166 167 6.516860 CGTGGTTTAGGGGAAGTATGATAGAG 60.517 46.154 0.00 0.00 0.00 2.43
167 168 5.303589 CGTGGTTTAGGGGAAGTATGATAGA 59.696 44.000 0.00 0.00 0.00 1.98
168 169 5.303589 TCGTGGTTTAGGGGAAGTATGATAG 59.696 44.000 0.00 0.00 0.00 2.08
169 170 5.210430 TCGTGGTTTAGGGGAAGTATGATA 58.790 41.667 0.00 0.00 0.00 2.15
170 171 4.035112 TCGTGGTTTAGGGGAAGTATGAT 58.965 43.478 0.00 0.00 0.00 2.45
171 172 3.443052 TCGTGGTTTAGGGGAAGTATGA 58.557 45.455 0.00 0.00 0.00 2.15
172 173 3.899052 TCGTGGTTTAGGGGAAGTATG 57.101 47.619 0.00 0.00 0.00 2.39
173 174 4.296056 AGATCGTGGTTTAGGGGAAGTAT 58.704 43.478 0.00 0.00 0.00 2.12
174 175 3.716431 AGATCGTGGTTTAGGGGAAGTA 58.284 45.455 0.00 0.00 0.00 2.24
175 176 2.547990 AGATCGTGGTTTAGGGGAAGT 58.452 47.619 0.00 0.00 0.00 3.01
176 177 3.270877 CAAGATCGTGGTTTAGGGGAAG 58.729 50.000 0.02 0.00 0.00 3.46
177 178 2.617021 GCAAGATCGTGGTTTAGGGGAA 60.617 50.000 10.74 0.00 0.00 3.97
178 179 1.065709 GCAAGATCGTGGTTTAGGGGA 60.066 52.381 10.74 0.00 0.00 4.81
179 180 1.379527 GCAAGATCGTGGTTTAGGGG 58.620 55.000 10.74 0.00 0.00 4.79
180 181 1.379527 GGCAAGATCGTGGTTTAGGG 58.620 55.000 10.74 0.00 0.00 3.53
181 182 1.006832 CGGCAAGATCGTGGTTTAGG 58.993 55.000 10.74 0.00 0.00 2.69
182 183 1.659098 GACGGCAAGATCGTGGTTTAG 59.341 52.381 10.74 0.00 41.22 1.85
183 184 1.717194 GACGGCAAGATCGTGGTTTA 58.283 50.000 10.74 0.00 41.22 2.01
184 185 1.289109 CGACGGCAAGATCGTGGTTT 61.289 55.000 10.74 0.00 41.22 3.27
185 186 1.736645 CGACGGCAAGATCGTGGTT 60.737 57.895 10.74 0.00 41.22 3.67
186 187 2.126071 CGACGGCAAGATCGTGGT 60.126 61.111 10.74 0.63 41.22 4.16
187 188 3.554692 GCGACGGCAAGATCGTGG 61.555 66.667 10.74 0.00 41.22 4.94
188 189 3.554692 GGCGACGGCAAGATCGTG 61.555 66.667 17.49 4.06 41.22 4.35
200 201 2.954753 CTGCAACAACTCCGGCGAC 61.955 63.158 9.30 0.00 0.00 5.19
201 202 2.664851 CTGCAACAACTCCGGCGA 60.665 61.111 9.30 0.00 0.00 5.54
202 203 4.389576 GCTGCAACAACTCCGGCG 62.390 66.667 0.00 0.00 0.00 6.46
203 204 2.970974 GAGCTGCAACAACTCCGGC 61.971 63.158 1.02 0.00 0.00 6.13
204 205 1.294659 GAGAGCTGCAACAACTCCGG 61.295 60.000 1.02 0.00 27.88 5.14
205 206 0.601046 TGAGAGCTGCAACAACTCCG 60.601 55.000 1.02 0.00 27.88 4.63
206 207 1.818642 ATGAGAGCTGCAACAACTCC 58.181 50.000 1.02 1.76 27.88 3.85
207 208 5.106396 ACAATAATGAGAGCTGCAACAACTC 60.106 40.000 1.02 7.18 0.00 3.01
208 209 4.763793 ACAATAATGAGAGCTGCAACAACT 59.236 37.500 1.02 0.00 0.00 3.16
209 210 5.051891 ACAATAATGAGAGCTGCAACAAC 57.948 39.130 1.02 0.00 0.00 3.32
210 211 4.142838 CGACAATAATGAGAGCTGCAACAA 60.143 41.667 1.02 0.00 0.00 2.83
211 212 3.371898 CGACAATAATGAGAGCTGCAACA 59.628 43.478 1.02 0.00 0.00 3.33
212 213 3.372206 ACGACAATAATGAGAGCTGCAAC 59.628 43.478 1.02 0.00 0.00 4.17
213 214 3.599343 ACGACAATAATGAGAGCTGCAA 58.401 40.909 1.02 0.00 0.00 4.08
214 215 3.251479 ACGACAATAATGAGAGCTGCA 57.749 42.857 1.02 0.00 0.00 4.41
215 216 3.372206 ACAACGACAATAATGAGAGCTGC 59.628 43.478 0.00 0.00 0.00 5.25
216 217 4.627035 TGACAACGACAATAATGAGAGCTG 59.373 41.667 0.00 0.00 0.00 4.24
217 218 4.627467 GTGACAACGACAATAATGAGAGCT 59.373 41.667 0.00 0.00 0.00 4.09
218 219 4.886971 GTGACAACGACAATAATGAGAGC 58.113 43.478 0.00 0.00 0.00 4.09
233 234 2.319841 GGGTTACGGCCGTGACAAC 61.320 63.158 42.01 34.55 36.50 3.32
234 235 2.030862 GGGTTACGGCCGTGACAA 59.969 61.111 42.01 27.70 36.50 3.18
235 236 3.229156 CTGGGTTACGGCCGTGACA 62.229 63.158 42.01 30.54 36.50 3.58
236 237 2.433664 CTGGGTTACGGCCGTGAC 60.434 66.667 37.23 37.23 34.42 3.67
237 238 2.918802 ACTGGGTTACGGCCGTGA 60.919 61.111 40.02 30.74 0.00 4.35
238 239 2.433664 GACTGGGTTACGGCCGTG 60.434 66.667 40.02 24.32 0.00 4.94
239 240 3.698820 GGACTGGGTTACGGCCGT 61.699 66.667 36.01 36.01 0.00 5.68
240 241 4.807039 CGGACTGGGTTACGGCCG 62.807 72.222 26.86 26.86 38.26 6.13
243 244 4.807039 CCGCGGACTGGGTTACGG 62.807 72.222 24.07 0.00 0.00 4.02
244 245 3.751246 TCCGCGGACTGGGTTACG 61.751 66.667 27.28 0.00 0.00 3.18
245 246 2.125793 GTCCGCGGACTGGGTTAC 60.126 66.667 43.32 21.20 41.57 2.50
246 247 3.384532 GGTCCGCGGACTGGGTTA 61.385 66.667 46.25 16.57 44.04 2.85
251 252 4.570663 GATCGGGTCCGCGGACTG 62.571 72.222 46.25 38.51 44.04 3.51
301 302 4.728102 TTAGTGCGCCACGTCGGG 62.728 66.667 4.18 0.00 39.64 5.14
302 303 3.475774 GTTAGTGCGCCACGTCGG 61.476 66.667 4.18 0.00 39.64 4.79
303 304 2.009625 GATGTTAGTGCGCCACGTCG 62.010 60.000 4.18 0.00 39.64 5.12
304 305 1.708027 GATGTTAGTGCGCCACGTC 59.292 57.895 4.18 3.73 39.64 4.34
305 306 2.092291 CGATGTTAGTGCGCCACGT 61.092 57.895 4.18 0.00 39.64 4.49
306 307 2.695055 CGATGTTAGTGCGCCACG 59.305 61.111 4.18 0.00 39.64 4.94
307 308 1.693083 GACCGATGTTAGTGCGCCAC 61.693 60.000 4.18 3.02 34.10 5.01
308 309 1.447140 GACCGATGTTAGTGCGCCA 60.447 57.895 4.18 0.00 0.00 5.69
309 310 2.514013 CGACCGATGTTAGTGCGCC 61.514 63.158 4.18 0.00 0.00 6.53
310 311 2.995482 CGACCGATGTTAGTGCGC 59.005 61.111 0.00 0.00 0.00 6.09
311 312 1.803922 TGCGACCGATGTTAGTGCG 60.804 57.895 0.00 0.00 0.00 5.34
312 313 1.693083 GGTGCGACCGATGTTAGTGC 61.693 60.000 0.00 0.00 0.00 4.40
313 314 2.369870 GGTGCGACCGATGTTAGTG 58.630 57.895 0.00 0.00 0.00 2.74
314 315 4.904466 GGTGCGACCGATGTTAGT 57.096 55.556 0.00 0.00 0.00 2.24
332 333 4.736896 GGGGTCGTGACGGAGCAC 62.737 72.222 4.70 0.00 36.17 4.40
334 335 4.436998 CTGGGGTCGTGACGGAGC 62.437 72.222 4.70 1.52 0.00 4.70
335 336 4.436998 GCTGGGGTCGTGACGGAG 62.437 72.222 4.70 0.00 0.00 4.63
339 340 1.940883 TATGTCGCTGGGGTCGTGAC 61.941 60.000 0.00 0.00 41.11 3.67
340 341 1.679641 TATGTCGCTGGGGTCGTGA 60.680 57.895 0.00 0.00 0.00 4.35
341 342 1.518572 GTATGTCGCTGGGGTCGTG 60.519 63.158 0.00 0.00 0.00 4.35
342 343 2.890371 GTATGTCGCTGGGGTCGT 59.110 61.111 0.00 0.00 0.00 4.34
343 344 2.278596 CGTATGTCGCTGGGGTCG 60.279 66.667 0.00 0.00 0.00 4.79
352 353 2.337749 AAGGAGCTCGGCGTATGTCG 62.338 60.000 6.85 1.58 46.81 4.35
353 354 0.595310 GAAGGAGCTCGGCGTATGTC 60.595 60.000 6.85 0.00 0.00 3.06
354 355 1.038130 AGAAGGAGCTCGGCGTATGT 61.038 55.000 6.85 0.00 0.00 2.29
355 356 0.318275 GAGAAGGAGCTCGGCGTATG 60.318 60.000 6.85 0.00 0.00 2.39
356 357 1.457009 GGAGAAGGAGCTCGGCGTAT 61.457 60.000 6.85 0.00 35.74 3.06
357 358 2.119655 GGAGAAGGAGCTCGGCGTA 61.120 63.158 6.85 0.00 35.74 4.42
358 359 3.453679 GGAGAAGGAGCTCGGCGT 61.454 66.667 6.85 0.00 35.74 5.68
359 360 3.452786 TGGAGAAGGAGCTCGGCG 61.453 66.667 7.83 0.00 35.74 6.46
360 361 2.185608 GTGGAGAAGGAGCTCGGC 59.814 66.667 7.83 0.00 35.74 5.54
361 362 2.896443 GGTGGAGAAGGAGCTCGG 59.104 66.667 7.83 0.00 35.74 4.63
362 363 2.492090 CGGTGGAGAAGGAGCTCG 59.508 66.667 7.83 0.00 35.74 5.03
363 364 2.896443 CCGGTGGAGAAGGAGCTC 59.104 66.667 4.71 4.71 0.00 4.09
364 365 3.394836 GCCGGTGGAGAAGGAGCT 61.395 66.667 1.90 0.00 0.00 4.09
365 366 4.821589 CGCCGGTGGAGAAGGAGC 62.822 72.222 7.26 0.00 0.00 4.70
366 367 3.068691 TCGCCGGTGGAGAAGGAG 61.069 66.667 16.49 0.00 0.00 3.69
367 368 3.379445 GTCGCCGGTGGAGAAGGA 61.379 66.667 16.49 0.00 32.47 3.36
368 369 3.691342 TGTCGCCGGTGGAGAAGG 61.691 66.667 16.49 0.00 32.47 3.46
369 370 2.432628 GTGTCGCCGGTGGAGAAG 60.433 66.667 16.49 0.00 32.47 2.85
370 371 3.228017 TGTGTCGCCGGTGGAGAA 61.228 61.111 16.49 0.00 32.47 2.87
371 372 3.986006 GTGTGTCGCCGGTGGAGA 61.986 66.667 16.49 2.46 0.00 3.71
393 394 4.148825 ATGAGGGTCAGGCGCGTC 62.149 66.667 0.21 0.21 34.93 5.19
394 395 4.457496 CATGAGGGTCAGGCGCGT 62.457 66.667 8.43 0.00 34.93 6.01
395 396 3.664025 TTCATGAGGGTCAGGCGCG 62.664 63.158 0.00 0.00 34.93 6.86
396 397 2.109126 GTTCATGAGGGTCAGGCGC 61.109 63.158 0.00 0.00 0.00 6.53
397 398 0.742281 CTGTTCATGAGGGTCAGGCG 60.742 60.000 0.00 0.00 0.00 5.52
398 399 0.326264 ACTGTTCATGAGGGTCAGGC 59.674 55.000 17.15 0.00 0.00 4.85
399 400 3.981071 TTACTGTTCATGAGGGTCAGG 57.019 47.619 17.15 0.00 0.00 3.86
400 401 7.554118 ACATAATTTACTGTTCATGAGGGTCAG 59.446 37.037 13.66 13.66 0.00 3.51
401 402 7.402054 ACATAATTTACTGTTCATGAGGGTCA 58.598 34.615 0.00 0.00 0.00 4.02
402 403 7.865706 ACATAATTTACTGTTCATGAGGGTC 57.134 36.000 0.00 0.00 0.00 4.46
470 471 7.611855 AGATCAATGGTTTCTTTTACGGAAGAT 59.388 33.333 0.00 0.00 35.70 2.40
496 497 9.045745 TGCCATATATAACACCTGAGATTATCA 57.954 33.333 0.00 0.00 36.21 2.15
513 514 9.236006 GTACTTTTCCATGAAGATGCCATATAT 57.764 33.333 0.00 0.00 0.00 0.86
514 515 8.439971 AGTACTTTTCCATGAAGATGCCATATA 58.560 33.333 0.00 0.00 0.00 0.86
515 516 7.293073 AGTACTTTTCCATGAAGATGCCATAT 58.707 34.615 0.00 0.00 0.00 1.78
620 622 5.696822 CGACGATAAAGCTTAGCTACCATA 58.303 41.667 7.32 0.00 38.25 2.74
650 658 3.061674 CGTCGTCGCCTTTTCTCG 58.938 61.111 0.00 0.00 0.00 4.04
775 783 4.096382 TGGACTTTGAGTTGAAACTGAAGC 59.904 41.667 0.00 2.51 39.88 3.86
814 822 7.108841 ACATGATTAGATTGCAGCATCTTTT 57.891 32.000 6.23 0.00 0.00 2.27
843 851 4.142182 TGTGGTGCTTGAAAGAAAGAAAGG 60.142 41.667 0.00 0.00 0.00 3.11
844 852 4.997565 TGTGGTGCTTGAAAGAAAGAAAG 58.002 39.130 0.00 0.00 0.00 2.62
845 853 5.596836 ATGTGGTGCTTGAAAGAAAGAAA 57.403 34.783 0.00 0.00 0.00 2.52
846 854 5.350633 CAATGTGGTGCTTGAAAGAAAGAA 58.649 37.500 0.00 0.00 0.00 2.52
847 855 4.737352 GCAATGTGGTGCTTGAAAGAAAGA 60.737 41.667 0.00 0.00 41.51 2.52
848 856 3.492011 GCAATGTGGTGCTTGAAAGAAAG 59.508 43.478 0.00 0.00 41.51 2.62
849 857 3.456280 GCAATGTGGTGCTTGAAAGAAA 58.544 40.909 0.00 0.00 41.51 2.52
850 858 2.224018 GGCAATGTGGTGCTTGAAAGAA 60.224 45.455 0.00 0.00 44.31 2.52
851 859 1.340889 GGCAATGTGGTGCTTGAAAGA 59.659 47.619 0.00 0.00 44.31 2.52
852 860 1.068895 TGGCAATGTGGTGCTTGAAAG 59.931 47.619 0.00 0.00 44.31 2.62
853 861 1.117994 TGGCAATGTGGTGCTTGAAA 58.882 45.000 0.00 0.00 44.31 2.69
854 862 0.388659 GTGGCAATGTGGTGCTTGAA 59.611 50.000 0.00 0.00 44.31 2.69
855 863 1.462731 GGTGGCAATGTGGTGCTTGA 61.463 55.000 0.00 0.00 44.31 3.02
856 864 1.005867 GGTGGCAATGTGGTGCTTG 60.006 57.895 0.00 0.00 44.31 4.01
857 865 1.457267 TGGTGGCAATGTGGTGCTT 60.457 52.632 0.00 0.00 44.31 3.91
858 866 2.198150 TGGTGGCAATGTGGTGCT 59.802 55.556 0.00 0.00 44.31 4.40
859 867 2.025767 TTGTGGTGGCAATGTGGTGC 62.026 55.000 0.00 0.00 44.14 5.01
860 868 0.463204 TTTGTGGTGGCAATGTGGTG 59.537 50.000 0.00 0.00 0.00 4.17
861 869 1.422531 ATTTGTGGTGGCAATGTGGT 58.577 45.000 0.00 0.00 0.00 4.16
862 870 3.674528 TTATTTGTGGTGGCAATGTGG 57.325 42.857 0.00 0.00 0.00 4.17
863 871 5.236282 TGAATTATTTGTGGTGGCAATGTG 58.764 37.500 0.00 0.00 0.00 3.21
864 872 5.480642 TGAATTATTTGTGGTGGCAATGT 57.519 34.783 0.00 0.00 0.00 2.71
865 873 6.256975 CAGATGAATTATTTGTGGTGGCAATG 59.743 38.462 0.00 0.00 0.00 2.82
866 874 6.070653 ACAGATGAATTATTTGTGGTGGCAAT 60.071 34.615 0.00 0.00 33.26 3.56
898 927 2.290705 GGGGCGTGGGTATTTATAGCAT 60.291 50.000 1.86 0.00 32.63 3.79
914 943 4.479993 AGCTAGCTTGCTGGGGCG 62.480 66.667 22.06 0.00 42.33 6.13
1433 1501 2.870411 GTTAACGTATGCATGGGGAGTC 59.130 50.000 10.16 0.00 0.00 3.36
1468 1536 8.624877 GTTGCACGTATACAGTATAATCTAACG 58.375 37.037 1.56 5.90 0.00 3.18
1522 1610 1.731700 GCCCAGCTACACATGCATG 59.268 57.895 25.09 25.09 0.00 4.06
1523 1611 1.820906 CGCCCAGCTACACATGCAT 60.821 57.895 0.00 0.00 0.00 3.96
1524 1612 2.436469 CGCCCAGCTACACATGCA 60.436 61.111 0.00 0.00 0.00 3.96
1525 1613 3.204827 CCGCCCAGCTACACATGC 61.205 66.667 0.00 0.00 0.00 4.06
1526 1614 2.514592 CCCGCCCAGCTACACATG 60.515 66.667 0.00 0.00 0.00 3.21
1773 1863 3.317603 AGTTGGTTGTAATGCAATGGC 57.682 42.857 0.00 0.00 39.55 4.40
1776 1866 4.705023 GGGACTAGTTGGTTGTAATGCAAT 59.295 41.667 0.00 0.00 39.55 3.56
1785 1875 4.566987 GAGTACTTGGGACTAGTTGGTTG 58.433 47.826 0.00 0.00 0.00 3.77
1795 1885 6.592607 TCAATAAATTGACGAGTACTTGGGAC 59.407 38.462 14.75 6.24 41.51 4.46
1809 1899 7.067372 GTGATCATCCACCAGTCAATAAATTGA 59.933 37.037 0.00 1.23 43.94 2.57
1810 1900 7.067859 AGTGATCATCCACCAGTCAATAAATTG 59.932 37.037 0.00 0.00 37.76 2.32
1811 1901 7.067859 CAGTGATCATCCACCAGTCAATAAATT 59.932 37.037 0.00 0.00 37.76 1.82
1812 1902 6.544931 CAGTGATCATCCACCAGTCAATAAAT 59.455 38.462 0.00 0.00 37.76 1.40
1813 1903 5.882000 CAGTGATCATCCACCAGTCAATAAA 59.118 40.000 0.00 0.00 37.76 1.40
1814 1904 5.430886 CAGTGATCATCCACCAGTCAATAA 58.569 41.667 0.00 0.00 37.76 1.40
1815 1905 4.141642 CCAGTGATCATCCACCAGTCAATA 60.142 45.833 0.00 0.00 37.76 1.90
1816 1906 3.371273 CCAGTGATCATCCACCAGTCAAT 60.371 47.826 0.00 0.00 37.76 2.57
1817 1907 2.026915 CCAGTGATCATCCACCAGTCAA 60.027 50.000 0.00 0.00 37.76 3.18
1818 1908 1.556451 CCAGTGATCATCCACCAGTCA 59.444 52.381 0.00 0.00 37.76 3.41
1819 1909 1.556911 ACCAGTGATCATCCACCAGTC 59.443 52.381 0.00 0.00 37.76 3.51
1820 1910 1.280133 CACCAGTGATCATCCACCAGT 59.720 52.381 0.00 0.00 37.76 4.00
1821 1911 2.015588 GCACCAGTGATCATCCACCAG 61.016 57.143 0.00 0.00 37.76 4.00
1822 1912 0.035152 GCACCAGTGATCATCCACCA 60.035 55.000 0.00 0.00 37.76 4.17
1823 1913 0.254178 AGCACCAGTGATCATCCACC 59.746 55.000 0.00 0.00 37.76 4.61
1824 1914 2.119801 AAGCACCAGTGATCATCCAC 57.880 50.000 0.00 0.00 37.32 4.02
1854 1944 5.895534 ACGAAAGATTAGGTACATACTCCCA 59.104 40.000 1.74 0.00 0.00 4.37
1855 1945 6.040166 TGACGAAAGATTAGGTACATACTCCC 59.960 42.308 1.74 0.00 0.00 4.30
1856 1946 7.035840 TGACGAAAGATTAGGTACATACTCC 57.964 40.000 1.74 0.00 0.00 3.85
1857 1947 8.922058 TTTGACGAAAGATTAGGTACATACTC 57.078 34.615 0.00 0.00 0.00 2.59
1865 1955 9.372369 CTCTCTTTATTTGACGAAAGATTAGGT 57.628 33.333 0.00 0.00 40.09 3.08
1866 1956 8.821894 CCTCTCTTTATTTGACGAAAGATTAGG 58.178 37.037 0.00 9.62 40.09 2.69
1868 1958 8.537016 TCCCTCTCTTTATTTGACGAAAGATTA 58.463 33.333 0.00 0.00 40.09 1.75
1869 1959 7.394816 TCCCTCTCTTTATTTGACGAAAGATT 58.605 34.615 0.00 0.00 40.09 2.40
1871 1961 6.354794 TCCCTCTCTTTATTTGACGAAAGA 57.645 37.500 0.00 0.00 38.93 2.52
1872 1962 7.119846 ACATTCCCTCTCTTTATTTGACGAAAG 59.880 37.037 0.00 0.00 34.57 2.62
1873 1963 6.940298 ACATTCCCTCTCTTTATTTGACGAAA 59.060 34.615 0.00 0.00 0.00 3.46
1874 1964 6.472887 ACATTCCCTCTCTTTATTTGACGAA 58.527 36.000 0.00 0.00 0.00 3.85
1876 1966 6.018669 GCTACATTCCCTCTCTTTATTTGACG 60.019 42.308 0.00 0.00 0.00 4.35
1877 1967 6.823689 TGCTACATTCCCTCTCTTTATTTGAC 59.176 38.462 0.00 0.00 0.00 3.18
1878 1968 6.823689 GTGCTACATTCCCTCTCTTTATTTGA 59.176 38.462 0.00 0.00 0.00 2.69
1879 1969 6.825721 AGTGCTACATTCCCTCTCTTTATTTG 59.174 38.462 0.00 0.00 0.00 2.32
1880 1970 6.825721 CAGTGCTACATTCCCTCTCTTTATTT 59.174 38.462 0.00 0.00 0.00 1.40
1881 1971 6.156949 TCAGTGCTACATTCCCTCTCTTTATT 59.843 38.462 0.00 0.00 0.00 1.40
1882 1972 5.663106 TCAGTGCTACATTCCCTCTCTTTAT 59.337 40.000 0.00 0.00 0.00 1.40
1883 1973 5.023452 TCAGTGCTACATTCCCTCTCTTTA 58.977 41.667 0.00 0.00 0.00 1.85
1884 1974 3.840666 TCAGTGCTACATTCCCTCTCTTT 59.159 43.478 0.00 0.00 0.00 2.52
1885 1975 3.445008 TCAGTGCTACATTCCCTCTCTT 58.555 45.455 0.00 0.00 0.00 2.85
1924 2014 1.594862 CGATTCTTGTCGCCATCCTTC 59.405 52.381 0.00 0.00 34.56 3.46
1925 2015 1.207089 TCGATTCTTGTCGCCATCCTT 59.793 47.619 0.00 0.00 41.22 3.36
1927 2017 1.871080 ATCGATTCTTGTCGCCATCC 58.129 50.000 0.00 0.00 41.22 3.51
1930 2020 1.651987 GGAATCGATTCTTGTCGCCA 58.348 50.000 31.32 0.00 41.22 5.69
1931 2021 0.938008 GGGAATCGATTCTTGTCGCC 59.062 55.000 31.32 21.19 41.22 5.54
2049 2150 4.630069 TCAAAACTTAGCTATCAGTTCGGC 59.370 41.667 10.52 0.00 31.79 5.54
2135 2236 9.979578 TTGGTAGTACGAGTAATTACTTTCAAA 57.020 29.630 18.96 0.00 36.50 2.69
2214 2316 3.069946 CCATGCCGGCAACCACAT 61.070 61.111 36.33 13.75 0.00 3.21
2223 2325 1.209504 TCTTCTAGAAACCCATGCCGG 59.790 52.381 6.63 0.00 0.00 6.13
2264 2366 2.676839 CCTCAGATCTGTGACATGCAAC 59.323 50.000 23.17 0.00 0.00 4.17
2330 2432 0.807496 CAACTAAAGCCAGAGCCAGC 59.193 55.000 0.00 0.00 41.25 4.85
2346 2448 2.424956 GTGATGGGAGGCATCTTTCAAC 59.575 50.000 0.00 0.00 0.00 3.18
2395 2501 9.609346 ACCGCTAGCTTTATCTTTTCTTTAATA 57.391 29.630 13.93 0.00 0.00 0.98
2396 2502 8.507524 ACCGCTAGCTTTATCTTTTCTTTAAT 57.492 30.769 13.93 0.00 0.00 1.40
2400 2506 9.425577 GATATACCGCTAGCTTTATCTTTTCTT 57.574 33.333 13.93 0.00 0.00 2.52
2401 2507 8.808092 AGATATACCGCTAGCTTTATCTTTTCT 58.192 33.333 13.93 7.07 0.00 2.52
2402 2508 8.989653 AGATATACCGCTAGCTTTATCTTTTC 57.010 34.615 13.93 5.27 0.00 2.29
2403 2509 7.755822 CGAGATATACCGCTAGCTTTATCTTTT 59.244 37.037 13.93 0.00 0.00 2.27
2406 2512 5.297278 CCGAGATATACCGCTAGCTTTATCT 59.703 44.000 13.93 16.53 0.00 1.98
2416 2522 2.085320 CACTAGCCGAGATATACCGCT 58.915 52.381 0.00 0.00 0.00 5.52
2419 2525 4.522722 AAAGCACTAGCCGAGATATACC 57.477 45.455 0.00 0.00 43.56 2.73
2422 2528 7.889873 ATAGATAAAGCACTAGCCGAGATAT 57.110 36.000 0.00 0.00 43.56 1.63
2431 2537 6.622549 CCCCGTTCTATAGATAAAGCACTAG 58.377 44.000 2.58 0.00 0.00 2.57
2433 2539 4.262506 GCCCCGTTCTATAGATAAAGCACT 60.263 45.833 2.58 0.00 0.00 4.40
2443 2549 0.241481 GCTCTCGCCCCGTTCTATAG 59.759 60.000 0.00 0.00 0.00 1.31
2444 2550 2.338381 GCTCTCGCCCCGTTCTATA 58.662 57.895 0.00 0.00 0.00 1.31
2445 2551 3.130227 GCTCTCGCCCCGTTCTAT 58.870 61.111 0.00 0.00 0.00 1.98
2456 2565 4.759782 TCTTCTCTTAAAATGGGCTCTCG 58.240 43.478 0.00 0.00 0.00 4.04
2462 2571 7.196331 CGGCTTTATTCTTCTCTTAAAATGGG 58.804 38.462 0.00 0.00 0.00 4.00
2469 2578 4.481368 TGCCGGCTTTATTCTTCTCTTA 57.519 40.909 29.70 0.00 0.00 2.10
2470 2579 3.350219 TGCCGGCTTTATTCTTCTCTT 57.650 42.857 29.70 0.00 0.00 2.85
2472 2581 2.550180 GGATGCCGGCTTTATTCTTCTC 59.450 50.000 29.70 5.65 0.00 2.87
2486 2595 3.634397 AGTTGGATATATGGGATGCCG 57.366 47.619 0.00 0.00 0.00 5.69
2534 2646 6.737720 ACAGAGTAGAAGGAATCATATGCA 57.262 37.500 0.00 0.00 0.00 3.96
2613 2725 8.671384 TTATCACTTACTTTGCAACTAAGTGT 57.329 30.769 31.92 25.87 44.03 3.55
2641 2753 4.039703 GGAACGTTTTGGCACTTTTACTC 58.960 43.478 0.46 0.00 0.00 2.59
2643 2755 4.036567 AGGAACGTTTTGGCACTTTTAC 57.963 40.909 0.46 0.00 0.00 2.01
2695 2807 8.812972 GGATACTTCAGTTTCCCCTTTTAAAAT 58.187 33.333 0.09 0.00 39.34 1.82
2697 2809 7.770366 GGATACTTCAGTTTCCCCTTTTAAA 57.230 36.000 5.37 0.00 39.34 1.52
2718 2865 6.723052 AGAAAACAGAATTTGTGATGAGGGAT 59.277 34.615 0.00 0.00 40.74 3.85
2755 2902 2.885266 TGAGATCCTGCGTAGGTACATC 59.115 50.000 19.70 14.55 44.88 3.06
2831 2978 1.446099 GAAGCCGCTGTCGATGTCA 60.446 57.895 0.00 0.00 38.10 3.58
2870 3017 2.901042 CCGGAGTTAGGAGGGCAC 59.099 66.667 0.00 0.00 0.00 5.01
2932 3079 3.746045 AGTAGTTGTTCTCAAAGGCGA 57.254 42.857 0.00 0.00 35.20 5.54
2945 3092 4.213482 GCAACCAGGTTCTTGTAGTAGTTG 59.787 45.833 0.12 0.00 36.14 3.16
3115 3262 3.969976 CCTGATCTCTCCATTGTTCCCTA 59.030 47.826 0.00 0.00 0.00 3.53
3295 3444 5.188194 GTCGAATTATTCAATGAACGGACG 58.812 41.667 0.00 1.87 0.00 4.79
3336 3485 4.587584 AATGATGCAACACACAATGACA 57.412 36.364 0.00 0.00 0.00 3.58
3337 3486 5.224888 AGAAATGATGCAACACACAATGAC 58.775 37.500 0.00 0.00 0.00 3.06
3338 3487 5.456548 AGAAATGATGCAACACACAATGA 57.543 34.783 0.00 0.00 0.00 2.57
3339 3488 6.151004 TGTAGAAATGATGCAACACACAATG 58.849 36.000 0.00 0.00 0.00 2.82
3340 3489 6.330004 TGTAGAAATGATGCAACACACAAT 57.670 33.333 0.00 0.00 0.00 2.71
3341 3490 5.764487 TGTAGAAATGATGCAACACACAA 57.236 34.783 0.00 0.00 0.00 3.33
3342 3491 5.963176 ATGTAGAAATGATGCAACACACA 57.037 34.783 0.00 0.00 0.00 3.72
3343 3492 6.862608 TGAAATGTAGAAATGATGCAACACAC 59.137 34.615 0.00 0.00 0.00 3.82
3396 3545 8.270744 AGAGCTTTATATGACTTGTCTTCCAAT 58.729 33.333 2.35 0.00 31.20 3.16
3409 3558 5.507482 CGTCGGGAGAAAGAGCTTTATATGA 60.507 44.000 0.00 0.00 42.89 2.15
3417 3566 0.894184 TGACGTCGGGAGAAAGAGCT 60.894 55.000 11.62 0.00 42.89 4.09
3418 3567 0.733223 GTGACGTCGGGAGAAAGAGC 60.733 60.000 11.62 0.00 42.89 4.09
3419 3568 0.109226 GGTGACGTCGGGAGAAAGAG 60.109 60.000 11.62 0.00 42.89 2.85
3421 3570 0.388649 CTGGTGACGTCGGGAGAAAG 60.389 60.000 11.62 0.00 42.89 2.62
3433 3626 0.671781 ATCACGAGCTTGCTGGTGAC 60.672 55.000 31.71 5.57 42.97 3.67
3442 3635 1.153549 GGAGGCGAATCACGAGCTT 60.154 57.895 0.00 0.00 45.77 3.74
3446 3639 2.363795 AGGGGAGGCGAATCACGA 60.364 61.111 0.00 0.00 45.77 4.35
3485 3679 1.689582 GATTCCCCTCCCCGTCACT 60.690 63.158 0.00 0.00 0.00 3.41
3491 3685 2.044620 ACCAGGATTCCCCTCCCC 59.955 66.667 0.00 0.00 45.60 4.81
3505 3699 0.759959 TAACTGAAACGGAGGCACCA 59.240 50.000 0.94 0.00 38.90 4.17
3520 3714 9.152327 ACAAAAACCTAACCTAGACTACTAACT 57.848 33.333 0.00 0.00 0.00 2.24
3580 3775 7.484975 AGATGATAAACTCGAAGAAGAATCGT 58.515 34.615 0.00 0.00 40.99 3.73
3606 3801 0.821711 CTCGAGAAGGATCCGAGCCT 60.822 60.000 6.58 0.00 38.55 4.58
3649 3854 5.243954 CCAAGGAGACCATATGAATCTACGA 59.756 44.000 3.65 0.00 0.00 3.43
3663 3868 1.842381 CTCACCACCCCAAGGAGACC 61.842 65.000 0.00 0.00 36.73 3.85
3751 3956 1.141657 GCCCTGAAGCCATAGTGATCA 59.858 52.381 0.00 0.00 0.00 2.92
3778 3983 0.907704 TCGTGGATGTGCCCCTAAGT 60.908 55.000 0.00 0.00 34.97 2.24
3790 3995 0.391263 GCCGGAAAGTCTTCGTGGAT 60.391 55.000 5.05 0.00 32.23 3.41
3819 4024 1.048601 TCGGAGCAGACTTGACCTTT 58.951 50.000 0.00 0.00 0.00 3.11
3842 4047 4.988598 ACCGTTGTGGCTGCTCCG 62.989 66.667 0.00 0.00 43.94 4.63
3860 4065 1.026584 TCAAGACGAGTCACCGACAA 58.973 50.000 5.99 0.00 34.60 3.18
3875 4080 0.944311 AACGCACTACTGCCGTCAAG 60.944 55.000 0.00 0.00 40.73 3.02
3876 4081 0.942410 GAACGCACTACTGCCGTCAA 60.942 55.000 0.00 0.00 40.73 3.18
3933 4142 6.370718 ACCTAATACAAAAGTTTACCAGCTCG 59.629 38.462 0.00 0.00 0.00 5.03
3937 5034 9.840427 CATCAACCTAATACAAAAGTTTACCAG 57.160 33.333 0.00 0.00 0.00 4.00
3950 5047 6.985188 TTGTGAGAAGCATCAACCTAATAC 57.015 37.500 0.00 0.00 0.00 1.89
3953 5050 7.394016 TCTTATTGTGAGAAGCATCAACCTAA 58.606 34.615 0.00 0.00 0.00 2.69
4007 5104 7.618137 ACGTTAGGTTAACTTGTTCCATCTAT 58.382 34.615 5.42 0.00 36.54 1.98
4044 5141 3.817148 TTTTAGACCGTTCAATTCCGC 57.183 42.857 0.00 0.00 0.00 5.54
4114 5214 2.393271 AAGTAGGACATGCTGCACTC 57.607 50.000 3.57 2.21 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.