Multiple sequence alignment - TraesCS5A01G148400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G148400 chr5A 100.000 2687 0 0 1 2687 325995308 325997994 0.000000e+00 4963.0
1 TraesCS5A01G148400 chr5A 95.957 470 18 1 2218 2687 364204757 364204289 0.000000e+00 761.0
2 TraesCS5A01G148400 chr5A 95.745 470 20 0 2218 2687 156207130 156206661 0.000000e+00 758.0
3 TraesCS5A01G148400 chr5A 95.541 471 21 0 2217 2687 457055679 457056149 0.000000e+00 754.0
4 TraesCS5A01G148400 chr5A 94.444 468 26 0 2220 2687 598301617 598301150 0.000000e+00 721.0
5 TraesCS5A01G148400 chr5B 90.262 2290 95 42 1 2220 275172271 275174502 0.000000e+00 2876.0
6 TraesCS5A01G148400 chr5D 92.595 1310 47 27 932 2219 231322213 231320932 0.000000e+00 1836.0
7 TraesCS5A01G148400 chr5D 91.286 941 38 14 1 911 231323195 231322269 0.000000e+00 1243.0
8 TraesCS5A01G148400 chr2A 94.872 468 24 0 2220 2687 491535547 491535080 0.000000e+00 732.0
9 TraesCS5A01G148400 chr4A 94.480 471 24 2 2217 2687 65803237 65803705 0.000000e+00 725.0
10 TraesCS5A01G148400 chr4A 94.255 470 27 0 2218 2687 628816247 628816716 0.000000e+00 719.0
11 TraesCS5A01G148400 chr4A 94.255 470 27 0 2218 2687 684018831 684018362 0.000000e+00 719.0
12 TraesCS5A01G148400 chr4A 94.881 293 15 0 949 1241 477833810 477834102 2.440000e-125 459.0
13 TraesCS5A01G148400 chr4A 89.286 112 12 0 1120 1231 477830556 477830667 1.000000e-29 141.0
14 TraesCS5A01G148400 chr4B 93.724 478 28 2 2211 2687 361999192 361998716 0.000000e+00 715.0
15 TraesCS5A01G148400 chr4B 94.702 302 16 0 949 1250 139769315 139769014 1.130000e-128 470.0
16 TraesCS5A01G148400 chr4D 94.371 302 17 0 949 1250 98482062 98481761 5.240000e-127 464.0
17 TraesCS5A01G148400 chr1A 84.328 134 13 2 2088 2220 458410094 458410220 1.010000e-24 124.0
18 TraesCS5A01G148400 chr7B 79.104 134 20 2 2088 2220 490310593 490310719 4.770000e-13 86.1
19 TraesCS5A01G148400 chr7B 95.349 43 2 0 2088 2130 131372190 131372148 4.800000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G148400 chr5A 325995308 325997994 2686 False 4963.0 4963 100.0000 1 2687 1 chr5A.!!$F1 2686
1 TraesCS5A01G148400 chr5B 275172271 275174502 2231 False 2876.0 2876 90.2620 1 2220 1 chr5B.!!$F1 2219
2 TraesCS5A01G148400 chr5D 231320932 231323195 2263 True 1539.5 1836 91.9405 1 2219 2 chr5D.!!$R1 2218
3 TraesCS5A01G148400 chr4A 477830556 477834102 3546 False 300.0 459 92.0835 949 1241 2 chr4A.!!$F3 292

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
272 273 0.108992 ATGCTCATTTTGGCTGTGCG 60.109 50.0 0.0 0.0 36.24 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2249 4594 0.107557 AACCCAGACAAAACGGACGT 60.108 50.0 0.0 0.0 0.0 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
251 252 0.952984 TCGTCGCCAATTGTCATGCA 60.953 50.000 4.43 0.00 0.00 3.96
272 273 0.108992 ATGCTCATTTTGGCTGTGCG 60.109 50.000 0.00 0.00 36.24 5.34
282 283 2.257691 TGGCTGTGCGGTAAAGTTTA 57.742 45.000 0.00 0.00 0.00 2.01
370 373 3.743521 TGCTGATAGTGTTCTTTGCTGT 58.256 40.909 0.00 0.00 0.00 4.40
374 377 3.814842 TGATAGTGTTCTTTGCTGTGGTG 59.185 43.478 0.00 0.00 0.00 4.17
377 380 2.423538 AGTGTTCTTTGCTGTGGTGAAC 59.576 45.455 0.00 0.00 37.92 3.18
424 447 3.804325 TCTTCTCGTTGAAAGCTGAACAG 59.196 43.478 0.00 0.00 33.79 3.16
431 454 6.198687 TCGTTGAAAGCTGAACAGTTAAATG 58.801 36.000 0.45 0.45 0.00 2.32
567 592 1.202687 GCACAGGTGATGCAGCCTATA 60.203 52.381 0.00 0.00 42.88 1.31
569 594 3.306989 GCACAGGTGATGCAGCCTATATA 60.307 47.826 0.00 0.00 42.88 0.86
570 595 4.248859 CACAGGTGATGCAGCCTATATAC 58.751 47.826 0.00 0.00 33.07 1.47
714 741 6.587226 GTCAATGCTGCATGAAAAACAAGATA 59.413 34.615 17.00 0.00 0.00 1.98
725 752 9.552114 CATGAAAAACAAGATAGAACATCAGAC 57.448 33.333 0.00 0.00 0.00 3.51
735 762 4.900635 AGAACATCAGACAAACACAACC 57.099 40.909 0.00 0.00 0.00 3.77
737 764 4.704540 AGAACATCAGACAAACACAACCAA 59.295 37.500 0.00 0.00 0.00 3.67
880 917 2.094390 TCCAGCTGCAAATCATTTGAGC 60.094 45.455 14.65 17.42 43.26 4.26
948 1020 3.821033 AGTCAAAAGAGCAATGTGGGTAC 59.179 43.478 0.00 0.00 0.00 3.34
950 1022 2.552315 CAAAAGAGCAATGTGGGTACGT 59.448 45.455 0.00 0.00 0.00 3.57
978 3285 2.419851 GCAGATGAAGAGGACTTGAGGG 60.420 54.545 0.00 0.00 36.39 4.30
1348 3655 3.583276 CTGACGCACGGTGGGCTAA 62.583 63.158 23.15 9.46 33.10 3.09
1349 3656 2.125269 GACGCACGGTGGGCTAAT 60.125 61.111 23.15 5.47 33.10 1.73
1356 3669 2.281553 GGTGGGCTAATAGCGGGC 60.282 66.667 6.15 0.00 43.62 6.13
1637 3959 1.101635 ATCGATCGCCTTCTCGACCA 61.102 55.000 11.09 0.00 45.63 4.02
1643 3965 1.376037 GCCTTCTCGACCACCAAGG 60.376 63.158 0.00 0.00 45.67 3.61
1646 3968 0.679505 CTTCTCGACCACCAAGGACA 59.320 55.000 0.00 0.00 41.22 4.02
1748 4074 5.333721 GCTTCTCGATTTATAGCTTGAAGCC 60.334 44.000 14.45 0.00 45.16 4.35
1815 4141 1.889573 GCGGGGCATTGCTCTAGTC 60.890 63.158 8.71 0.00 0.00 2.59
1936 4264 5.245531 TGTCATTGTGGAGTTAGGAACATC 58.754 41.667 0.00 0.00 0.00 3.06
2061 4405 3.316071 TTTATGCACATGCCCACTTTG 57.684 42.857 0.49 0.00 41.18 2.77
2069 4413 0.749649 ATGCCCACTTTGTTTTGCGA 59.250 45.000 0.00 0.00 0.00 5.10
2144 4488 6.018180 CAGCGTCTAAACTCTAAAACAACCTT 60.018 38.462 0.00 0.00 0.00 3.50
2175 4519 1.614051 CCAGGCCATACTGCAGTTTGA 60.614 52.381 31.27 14.02 37.16 2.69
2203 4548 3.711190 AGTCCTCCAAAGTTTGCCAAAAT 59.289 39.130 10.25 0.00 0.00 1.82
2205 4550 4.988540 GTCCTCCAAAGTTTGCCAAAATAC 59.011 41.667 10.25 0.00 0.00 1.89
2220 4565 8.420374 TGCCAAAATACGACTAGAAGAATTAG 57.580 34.615 0.00 0.00 0.00 1.73
2221 4566 7.494625 TGCCAAAATACGACTAGAAGAATTAGG 59.505 37.037 0.00 0.00 0.00 2.69
2222 4567 7.518529 GCCAAAATACGACTAGAAGAATTAGGC 60.519 40.741 0.00 5.31 0.00 3.93
2223 4568 7.041984 CCAAAATACGACTAGAAGAATTAGGCC 60.042 40.741 0.00 0.00 0.00 5.19
2224 4569 6.726490 AATACGACTAGAAGAATTAGGCCA 57.274 37.500 5.01 0.00 0.00 5.36
2225 4570 6.726490 ATACGACTAGAAGAATTAGGCCAA 57.274 37.500 5.01 0.00 0.00 4.52
2226 4571 4.756502 ACGACTAGAAGAATTAGGCCAAC 58.243 43.478 5.01 0.00 0.00 3.77
2227 4572 4.466726 ACGACTAGAAGAATTAGGCCAACT 59.533 41.667 5.01 0.00 0.00 3.16
2228 4573 5.044558 CGACTAGAAGAATTAGGCCAACTC 58.955 45.833 5.01 0.00 0.00 3.01
2229 4574 5.360649 ACTAGAAGAATTAGGCCAACTCC 57.639 43.478 5.01 0.00 0.00 3.85
2230 4575 4.783227 ACTAGAAGAATTAGGCCAACTCCA 59.217 41.667 5.01 0.00 0.00 3.86
2231 4576 3.956744 AGAAGAATTAGGCCAACTCCAC 58.043 45.455 5.01 0.00 0.00 4.02
2232 4577 2.808906 AGAATTAGGCCAACTCCACC 57.191 50.000 5.01 0.00 0.00 4.61
2233 4578 1.065418 AGAATTAGGCCAACTCCACCG 60.065 52.381 5.01 0.00 0.00 4.94
2234 4579 0.679960 AATTAGGCCAACTCCACCGC 60.680 55.000 5.01 0.00 0.00 5.68
2235 4580 2.869503 ATTAGGCCAACTCCACCGCG 62.870 60.000 5.01 0.00 0.00 6.46
2239 4584 3.055719 CCAACTCCACCGCGCAAT 61.056 61.111 8.75 0.00 0.00 3.56
2240 4585 2.480555 CAACTCCACCGCGCAATC 59.519 61.111 8.75 0.00 0.00 2.67
2241 4586 2.746277 AACTCCACCGCGCAATCC 60.746 61.111 8.75 0.00 0.00 3.01
2242 4587 4.778143 ACTCCACCGCGCAATCCC 62.778 66.667 8.75 0.00 0.00 3.85
2243 4588 4.776322 CTCCACCGCGCAATCCCA 62.776 66.667 8.75 0.00 0.00 4.37
2244 4589 4.337177 TCCACCGCGCAATCCCAA 62.337 61.111 8.75 0.00 0.00 4.12
2245 4590 3.369400 CCACCGCGCAATCCCAAA 61.369 61.111 8.75 0.00 0.00 3.28
2246 4591 2.126502 CACCGCGCAATCCCAAAC 60.127 61.111 8.75 0.00 0.00 2.93
2247 4592 3.732892 ACCGCGCAATCCCAAACG 61.733 61.111 8.75 0.00 0.00 3.60
2248 4593 4.474846 CCGCGCAATCCCAAACGG 62.475 66.667 8.75 0.00 0.00 4.44
2250 4595 2.178273 GCGCAATCCCAAACGGAC 59.822 61.111 0.30 0.00 46.09 4.79
2251 4596 2.478746 CGCAATCCCAAACGGACG 59.521 61.111 0.00 0.00 46.09 4.79
2252 4597 2.322081 CGCAATCCCAAACGGACGT 61.322 57.895 0.00 0.00 46.09 4.34
2253 4598 1.500396 GCAATCCCAAACGGACGTC 59.500 57.895 7.13 7.13 46.09 4.34
2254 4599 1.918868 GCAATCCCAAACGGACGTCC 61.919 60.000 25.28 25.28 46.09 4.79
2265 4610 2.231820 GGACGTCCGTTTTGTCTGG 58.768 57.895 20.85 0.00 33.21 3.86
2266 4611 1.226030 GGACGTCCGTTTTGTCTGGG 61.226 60.000 20.85 0.00 33.21 4.45
2267 4612 0.531311 GACGTCCGTTTTGTCTGGGT 60.531 55.000 3.51 0.00 0.00 4.51
2268 4613 0.107557 ACGTCCGTTTTGTCTGGGTT 60.108 50.000 0.00 0.00 0.00 4.11
2269 4614 0.584876 CGTCCGTTTTGTCTGGGTTC 59.415 55.000 0.00 0.00 0.00 3.62
2270 4615 1.808891 CGTCCGTTTTGTCTGGGTTCT 60.809 52.381 0.00 0.00 0.00 3.01
2271 4616 2.546373 CGTCCGTTTTGTCTGGGTTCTA 60.546 50.000 0.00 0.00 0.00 2.10
2272 4617 3.671716 GTCCGTTTTGTCTGGGTTCTAT 58.328 45.455 0.00 0.00 0.00 1.98
2273 4618 3.683340 GTCCGTTTTGTCTGGGTTCTATC 59.317 47.826 0.00 0.00 0.00 2.08
2274 4619 3.007635 CCGTTTTGTCTGGGTTCTATCC 58.992 50.000 0.00 0.00 0.00 2.59
2275 4620 2.671396 CGTTTTGTCTGGGTTCTATCCG 59.329 50.000 0.00 0.00 0.00 4.18
2276 4621 3.671716 GTTTTGTCTGGGTTCTATCCGT 58.328 45.455 0.00 0.00 0.00 4.69
2277 4622 4.070009 GTTTTGTCTGGGTTCTATCCGTT 58.930 43.478 0.00 0.00 0.00 4.44
2278 4623 4.360951 TTTGTCTGGGTTCTATCCGTTT 57.639 40.909 0.00 0.00 0.00 3.60
2279 4624 3.328382 TGTCTGGGTTCTATCCGTTTG 57.672 47.619 0.00 0.00 0.00 2.93
2280 4625 2.027561 TGTCTGGGTTCTATCCGTTTGG 60.028 50.000 0.00 0.00 0.00 3.28
2292 4637 3.290948 TCCGTTTGGATAGGGATTTGG 57.709 47.619 0.00 0.00 40.17 3.28
2293 4638 2.092103 TCCGTTTGGATAGGGATTTGGG 60.092 50.000 0.00 0.00 40.17 4.12
2294 4639 2.306847 CGTTTGGATAGGGATTTGGGG 58.693 52.381 0.00 0.00 0.00 4.96
2295 4640 2.357777 CGTTTGGATAGGGATTTGGGGT 60.358 50.000 0.00 0.00 0.00 4.95
2296 4641 3.296854 GTTTGGATAGGGATTTGGGGTC 58.703 50.000 0.00 0.00 0.00 4.46
2297 4642 1.136828 TGGATAGGGATTTGGGGTCG 58.863 55.000 0.00 0.00 0.00 4.79
2298 4643 1.137697 GGATAGGGATTTGGGGTCGT 58.862 55.000 0.00 0.00 0.00 4.34
2299 4644 1.202770 GGATAGGGATTTGGGGTCGTG 60.203 57.143 0.00 0.00 0.00 4.35
2300 4645 1.489230 GATAGGGATTTGGGGTCGTGT 59.511 52.381 0.00 0.00 0.00 4.49
2301 4646 0.906775 TAGGGATTTGGGGTCGTGTC 59.093 55.000 0.00 0.00 0.00 3.67
2302 4647 1.378119 GGGATTTGGGGTCGTGTCC 60.378 63.158 0.00 0.00 0.00 4.02
2303 4648 1.743995 GGATTTGGGGTCGTGTCCG 60.744 63.158 0.00 0.00 0.00 4.79
2304 4649 1.743995 GATTTGGGGTCGTGTCCGG 60.744 63.158 0.00 0.00 33.95 5.14
2305 4650 3.262448 ATTTGGGGTCGTGTCCGGG 62.262 63.158 0.00 0.00 33.95 5.73
2319 4664 4.838152 CGGGCGTGTCCTGGGATG 62.838 72.222 0.00 0.00 37.58 3.51
2323 4668 4.082523 CGTGTCCTGGGATGCGGT 62.083 66.667 0.00 0.00 0.00 5.68
2324 4669 2.436646 GTGTCCTGGGATGCGGTG 60.437 66.667 0.00 0.00 0.00 4.94
2325 4670 3.716195 TGTCCTGGGATGCGGTGG 61.716 66.667 0.00 0.00 0.00 4.61
2329 4674 4.511246 CTGGGATGCGGTGGCCAT 62.511 66.667 9.72 0.00 38.85 4.40
2330 4675 4.818863 TGGGATGCGGTGGCCATG 62.819 66.667 9.72 6.07 38.85 3.66
2358 4703 2.202479 GCGGACGCATCCTTTTGC 60.202 61.111 12.31 0.00 43.73 3.68
2359 4704 2.485122 CGGACGCATCCTTTTGCC 59.515 61.111 0.00 0.00 43.73 4.52
2360 4705 2.885113 GGACGCATCCTTTTGCCC 59.115 61.111 0.00 0.00 42.45 5.36
2361 4706 2.710902 GGACGCATCCTTTTGCCCC 61.711 63.158 0.00 0.00 42.45 5.80
2362 4707 1.976474 GACGCATCCTTTTGCCCCA 60.976 57.895 0.00 0.00 39.52 4.96
2363 4708 1.305213 ACGCATCCTTTTGCCCCAT 60.305 52.632 0.00 0.00 39.52 4.00
2364 4709 1.322538 ACGCATCCTTTTGCCCCATC 61.323 55.000 0.00 0.00 39.52 3.51
2365 4710 1.825341 GCATCCTTTTGCCCCATCC 59.175 57.895 0.00 0.00 36.60 3.51
2366 4711 0.688749 GCATCCTTTTGCCCCATCCT 60.689 55.000 0.00 0.00 36.60 3.24
2367 4712 1.117150 CATCCTTTTGCCCCATCCTG 58.883 55.000 0.00 0.00 0.00 3.86
2368 4713 0.712380 ATCCTTTTGCCCCATCCTGT 59.288 50.000 0.00 0.00 0.00 4.00
2369 4714 0.039618 TCCTTTTGCCCCATCCTGTC 59.960 55.000 0.00 0.00 0.00 3.51
2370 4715 0.972471 CCTTTTGCCCCATCCTGTCC 60.972 60.000 0.00 0.00 0.00 4.02
2371 4716 1.304052 TTTTGCCCCATCCTGTCCG 60.304 57.895 0.00 0.00 0.00 4.79
2372 4717 2.075355 TTTTGCCCCATCCTGTCCGT 62.075 55.000 0.00 0.00 0.00 4.69
2373 4718 2.478335 TTTGCCCCATCCTGTCCGTC 62.478 60.000 0.00 0.00 0.00 4.79
2374 4719 3.399181 GCCCCATCCTGTCCGTCA 61.399 66.667 0.00 0.00 0.00 4.35
2375 4720 2.903357 CCCCATCCTGTCCGTCAG 59.097 66.667 0.00 0.00 43.27 3.51
2382 4727 2.429930 CTGTCCGTCAGGGCCAAA 59.570 61.111 6.18 0.00 42.85 3.28
2383 4728 1.228124 CTGTCCGTCAGGGCCAAAA 60.228 57.895 6.18 0.00 42.85 2.44
2384 4729 0.821711 CTGTCCGTCAGGGCCAAAAA 60.822 55.000 6.18 0.00 42.85 1.94
2385 4730 0.178975 TGTCCGTCAGGGCCAAAAAT 60.179 50.000 6.18 0.00 42.85 1.82
2386 4731 0.243636 GTCCGTCAGGGCCAAAAATG 59.756 55.000 6.18 0.00 35.69 2.32
2387 4732 1.079888 CCGTCAGGGCCAAAAATGC 60.080 57.895 6.18 0.00 0.00 3.56
2397 4742 3.911868 GGCCAAAAATGCCCAAATTTTC 58.088 40.909 0.00 0.00 43.33 2.29
2398 4743 3.320256 GGCCAAAAATGCCCAAATTTTCA 59.680 39.130 0.00 0.00 43.33 2.69
2399 4744 4.021280 GGCCAAAAATGCCCAAATTTTCAT 60.021 37.500 0.00 0.00 43.33 2.57
2400 4745 5.162794 GCCAAAAATGCCCAAATTTTCATC 58.837 37.500 0.00 0.00 38.49 2.92
2401 4746 5.278858 GCCAAAAATGCCCAAATTTTCATCA 60.279 36.000 0.00 0.00 38.49 3.07
2402 4747 6.737899 GCCAAAAATGCCCAAATTTTCATCAA 60.738 34.615 0.00 0.00 38.49 2.57
2403 4748 7.208080 CCAAAAATGCCCAAATTTTCATCAAA 58.792 30.769 0.00 0.00 38.49 2.69
2404 4749 7.709613 CCAAAAATGCCCAAATTTTCATCAAAA 59.290 29.630 0.00 0.00 38.49 2.44
2405 4750 8.541312 CAAAAATGCCCAAATTTTCATCAAAAC 58.459 29.630 0.00 0.00 38.49 2.43
2406 4751 7.585579 AAATGCCCAAATTTTCATCAAAACT 57.414 28.000 0.00 0.00 34.24 2.66
2407 4752 8.688747 AAATGCCCAAATTTTCATCAAAACTA 57.311 26.923 0.00 0.00 34.24 2.24
2408 4753 7.910441 ATGCCCAAATTTTCATCAAAACTAG 57.090 32.000 0.00 0.00 34.24 2.57
2409 4754 6.825610 TGCCCAAATTTTCATCAAAACTAGT 58.174 32.000 0.00 0.00 34.24 2.57
2410 4755 7.278875 TGCCCAAATTTTCATCAAAACTAGTT 58.721 30.769 1.12 1.12 34.24 2.24
2411 4756 7.772757 TGCCCAAATTTTCATCAAAACTAGTTT 59.227 29.630 15.22 15.22 34.24 2.66
2412 4757 8.282592 GCCCAAATTTTCATCAAAACTAGTTTC 58.717 33.333 20.78 0.00 34.24 2.78
2413 4758 8.773645 CCCAAATTTTCATCAAAACTAGTTTCC 58.226 33.333 20.78 0.00 34.24 3.13
2414 4759 9.323985 CCAAATTTTCATCAAAACTAGTTTCCA 57.676 29.630 20.78 10.93 34.24 3.53
2417 4762 8.887036 ATTTTCATCAAAACTAGTTTCCAACC 57.113 30.769 20.78 0.00 34.24 3.77
2418 4763 6.399639 TTCATCAAAACTAGTTTCCAACCC 57.600 37.500 20.78 0.00 31.45 4.11
2419 4764 5.450453 TCATCAAAACTAGTTTCCAACCCA 58.550 37.500 20.78 0.56 31.45 4.51
2420 4765 5.894393 TCATCAAAACTAGTTTCCAACCCAA 59.106 36.000 20.78 2.21 31.45 4.12
2421 4766 6.381420 TCATCAAAACTAGTTTCCAACCCAAA 59.619 34.615 20.78 0.00 31.45 3.28
2422 4767 6.800072 TCAAAACTAGTTTCCAACCCAAAT 57.200 33.333 20.78 0.00 31.45 2.32
2423 4768 7.899648 TCAAAACTAGTTTCCAACCCAAATA 57.100 32.000 20.78 0.00 31.45 1.40
2424 4769 8.485578 TCAAAACTAGTTTCCAACCCAAATAT 57.514 30.769 20.78 0.00 31.45 1.28
2425 4770 8.929487 TCAAAACTAGTTTCCAACCCAAATATT 58.071 29.630 20.78 0.00 31.45 1.28
2426 4771 9.554395 CAAAACTAGTTTCCAACCCAAATATTT 57.446 29.630 20.78 0.00 31.45 1.40
2427 4772 9.554395 AAAACTAGTTTCCAACCCAAATATTTG 57.446 29.630 20.78 19.40 33.57 2.32
2428 4773 7.849322 ACTAGTTTCCAACCCAAATATTTGT 57.151 32.000 23.24 6.48 36.45 2.83
2429 4774 7.892609 ACTAGTTTCCAACCCAAATATTTGTC 58.107 34.615 23.24 5.79 36.45 3.18
2430 4775 6.994421 AGTTTCCAACCCAAATATTTGTCT 57.006 33.333 23.24 7.96 36.45 3.41
2431 4776 6.758254 AGTTTCCAACCCAAATATTTGTCTG 58.242 36.000 23.24 16.79 36.45 3.51
2432 4777 6.553100 AGTTTCCAACCCAAATATTTGTCTGA 59.447 34.615 23.24 11.50 36.45 3.27
2433 4778 6.985653 TTCCAACCCAAATATTTGTCTGAA 57.014 33.333 23.24 15.56 36.45 3.02
2434 4779 6.985653 TCCAACCCAAATATTTGTCTGAAA 57.014 33.333 23.24 5.66 36.45 2.69
2435 4780 7.366847 TCCAACCCAAATATTTGTCTGAAAA 57.633 32.000 23.24 4.39 36.45 2.29
2436 4781 7.972301 TCCAACCCAAATATTTGTCTGAAAAT 58.028 30.769 23.24 2.23 36.45 1.82
2437 4782 8.435982 TCCAACCCAAATATTTGTCTGAAAATT 58.564 29.630 23.24 6.19 36.45 1.82
2438 4783 9.717942 CCAACCCAAATATTTGTCTGAAAATTA 57.282 29.630 23.24 0.00 36.45 1.40
2504 4849 9.974980 ATAGTTTTACAACCAAATCGAAATTGT 57.025 25.926 11.83 9.75 37.30 2.71
2505 4850 8.347729 AGTTTTACAACCAAATCGAAATTGTC 57.652 30.769 11.83 0.00 35.26 3.18
2506 4851 8.194769 AGTTTTACAACCAAATCGAAATTGTCT 58.805 29.630 11.83 0.97 35.26 3.41
2507 4852 8.813282 GTTTTACAACCAAATCGAAATTGTCTT 58.187 29.630 11.83 2.61 35.26 3.01
2508 4853 7.922505 TTACAACCAAATCGAAATTGTCTTG 57.077 32.000 11.83 13.19 35.26 3.02
2509 4854 6.142818 ACAACCAAATCGAAATTGTCTTGA 57.857 33.333 18.66 0.00 0.00 3.02
2510 4855 5.977129 ACAACCAAATCGAAATTGTCTTGAC 59.023 36.000 18.66 0.00 0.00 3.18
2511 4856 6.183360 ACAACCAAATCGAAATTGTCTTGACT 60.183 34.615 18.66 5.18 0.00 3.41
2512 4857 7.012894 ACAACCAAATCGAAATTGTCTTGACTA 59.987 33.333 18.66 0.00 0.00 2.59
2513 4858 7.504924 ACCAAATCGAAATTGTCTTGACTAA 57.495 32.000 11.83 0.00 0.00 2.24
2514 4859 7.936584 ACCAAATCGAAATTGTCTTGACTAAA 58.063 30.769 11.83 0.00 0.00 1.85
2515 4860 7.860872 ACCAAATCGAAATTGTCTTGACTAAAC 59.139 33.333 11.83 0.00 0.00 2.01
2516 4861 7.860373 CCAAATCGAAATTGTCTTGACTAAACA 59.140 33.333 11.83 0.00 0.00 2.83
2517 4862 9.398170 CAAATCGAAATTGTCTTGACTAAACAT 57.602 29.630 6.23 0.00 0.00 2.71
2527 4872 8.106247 TGTCTTGACTAAACATAAAATGGACC 57.894 34.615 2.35 0.00 33.60 4.46
2528 4873 7.721842 TGTCTTGACTAAACATAAAATGGACCA 59.278 33.333 0.00 0.00 33.60 4.02
2529 4874 8.573035 GTCTTGACTAAACATAAAATGGACCAA 58.427 33.333 0.00 0.00 33.60 3.67
2530 4875 9.308000 TCTTGACTAAACATAAAATGGACCAAT 57.692 29.630 0.00 0.00 33.60 3.16
2533 4878 9.521841 TGACTAAACATAAAATGGACCAATACA 57.478 29.630 0.00 0.00 33.60 2.29
2557 4902 1.265236 TTGGTTGCCAATGTGATCCC 58.735 50.000 0.00 0.00 38.75 3.85
2558 4903 0.113972 TGGTTGCCAATGTGATCCCA 59.886 50.000 0.00 0.00 0.00 4.37
2559 4904 0.532115 GGTTGCCAATGTGATCCCAC 59.468 55.000 0.00 0.00 43.46 4.61
2567 4912 3.876300 GTGATCCCACACGTGCTC 58.124 61.111 17.22 5.64 42.72 4.26
2568 4913 1.005037 GTGATCCCACACGTGCTCA 60.005 57.895 17.22 8.26 42.72 4.26
2569 4914 0.602638 GTGATCCCACACGTGCTCAA 60.603 55.000 17.22 0.00 42.72 3.02
2570 4915 0.602638 TGATCCCACACGTGCTCAAC 60.603 55.000 17.22 3.93 0.00 3.18
2571 4916 1.298859 GATCCCACACGTGCTCAACC 61.299 60.000 17.22 0.00 0.00 3.77
2572 4917 2.050836 ATCCCACACGTGCTCAACCA 62.051 55.000 17.22 0.00 0.00 3.67
2573 4918 1.821759 CCCACACGTGCTCAACCAA 60.822 57.895 17.22 0.00 0.00 3.67
2574 4919 1.648720 CCACACGTGCTCAACCAAG 59.351 57.895 17.22 0.00 0.00 3.61
2575 4920 1.095228 CCACACGTGCTCAACCAAGT 61.095 55.000 17.22 0.00 0.00 3.16
2576 4921 0.304705 CACACGTGCTCAACCAAGTC 59.695 55.000 17.22 0.00 0.00 3.01
2577 4922 0.107897 ACACGTGCTCAACCAAGTCA 60.108 50.000 17.22 0.00 0.00 3.41
2578 4923 1.229428 CACGTGCTCAACCAAGTCAT 58.771 50.000 0.82 0.00 0.00 3.06
2579 4924 1.603802 CACGTGCTCAACCAAGTCATT 59.396 47.619 0.82 0.00 0.00 2.57
2580 4925 2.033299 CACGTGCTCAACCAAGTCATTT 59.967 45.455 0.82 0.00 0.00 2.32
2581 4926 2.687935 ACGTGCTCAACCAAGTCATTTT 59.312 40.909 0.00 0.00 0.00 1.82
2582 4927 3.044986 CGTGCTCAACCAAGTCATTTTG 58.955 45.455 0.00 0.00 0.00 2.44
2583 4928 3.243035 CGTGCTCAACCAAGTCATTTTGA 60.243 43.478 0.00 0.00 0.00 2.69
2584 4929 4.293415 GTGCTCAACCAAGTCATTTTGAG 58.707 43.478 5.93 5.93 45.19 3.02
2585 4930 3.318839 TGCTCAACCAAGTCATTTTGAGG 59.681 43.478 11.15 0.00 43.44 3.86
2586 4931 3.569701 GCTCAACCAAGTCATTTTGAGGA 59.430 43.478 11.15 0.00 43.44 3.71
2587 4932 4.219288 GCTCAACCAAGTCATTTTGAGGAT 59.781 41.667 11.15 0.00 43.44 3.24
2588 4933 5.279156 GCTCAACCAAGTCATTTTGAGGATT 60.279 40.000 11.15 0.00 43.44 3.01
2589 4934 6.331369 TCAACCAAGTCATTTTGAGGATTC 57.669 37.500 0.00 0.00 0.00 2.52
2590 4935 5.832595 TCAACCAAGTCATTTTGAGGATTCA 59.167 36.000 0.00 0.00 0.00 2.57
2591 4936 6.323482 TCAACCAAGTCATTTTGAGGATTCAA 59.677 34.615 0.00 0.00 41.44 2.69
2601 4946 4.771590 TTGAGGATTCAAATGAGTGTGC 57.228 40.909 0.00 0.00 40.26 4.57
2602 4947 3.084039 TGAGGATTCAAATGAGTGTGCC 58.916 45.455 0.00 0.00 0.00 5.01
2603 4948 3.084039 GAGGATTCAAATGAGTGTGCCA 58.916 45.455 0.00 0.00 0.00 4.92
2604 4949 3.499338 AGGATTCAAATGAGTGTGCCAA 58.501 40.909 0.00 0.00 0.00 4.52
2605 4950 4.091549 AGGATTCAAATGAGTGTGCCAAT 58.908 39.130 0.00 0.00 0.00 3.16
2606 4951 4.159135 AGGATTCAAATGAGTGTGCCAATC 59.841 41.667 0.00 0.00 0.00 2.67
2607 4952 4.082081 GGATTCAAATGAGTGTGCCAATCA 60.082 41.667 7.59 7.59 42.48 2.57
2608 4953 3.921119 TCAAATGAGTGTGCCAATCAC 57.079 42.857 7.35 0.00 41.15 3.06
2616 4961 2.470156 GTGCCAATCACGCATCTCA 58.530 52.632 0.00 0.00 38.76 3.27
2617 4962 0.097674 GTGCCAATCACGCATCTCAC 59.902 55.000 0.00 0.00 38.76 3.51
2618 4963 1.349627 GCCAATCACGCATCTCACG 59.650 57.895 0.00 0.00 0.00 4.35
2619 4964 2.009108 CCAATCACGCATCTCACGG 58.991 57.895 0.00 0.00 34.00 4.94
2620 4965 0.740868 CCAATCACGCATCTCACGGT 60.741 55.000 0.00 0.00 34.00 4.83
2621 4966 0.371301 CAATCACGCATCTCACGGTG 59.629 55.000 0.56 0.56 34.00 4.94
2622 4967 0.740868 AATCACGCATCTCACGGTGG 60.741 55.000 8.50 0.00 34.00 4.61
2623 4968 1.604147 ATCACGCATCTCACGGTGGA 61.604 55.000 8.50 5.09 34.00 4.02
2624 4969 1.374125 CACGCATCTCACGGTGGAA 60.374 57.895 8.50 0.00 34.00 3.53
2625 4970 0.740868 CACGCATCTCACGGTGGAAT 60.741 55.000 8.50 0.00 34.00 3.01
2626 4971 0.036388 ACGCATCTCACGGTGGAATT 60.036 50.000 8.50 0.00 34.00 2.17
2627 4972 0.374758 CGCATCTCACGGTGGAATTG 59.625 55.000 8.50 3.03 0.00 2.32
2628 4973 0.734889 GCATCTCACGGTGGAATTGG 59.265 55.000 8.50 0.00 0.00 3.16
2629 4974 1.382522 CATCTCACGGTGGAATTGGG 58.617 55.000 8.50 0.00 0.00 4.12
2630 4975 0.394352 ATCTCACGGTGGAATTGGGC 60.394 55.000 8.50 0.00 0.00 5.36
2631 4976 1.303236 CTCACGGTGGAATTGGGCA 60.303 57.895 8.50 0.00 0.00 5.36
2632 4977 0.893270 CTCACGGTGGAATTGGGCAA 60.893 55.000 8.50 0.00 0.00 4.52
2633 4978 0.468214 TCACGGTGGAATTGGGCAAA 60.468 50.000 8.50 0.00 0.00 3.68
2634 4979 0.319469 CACGGTGGAATTGGGCAAAC 60.319 55.000 0.00 0.00 0.00 2.93
2635 4980 0.469144 ACGGTGGAATTGGGCAAACT 60.469 50.000 0.00 0.00 0.00 2.66
2636 4981 0.038343 CGGTGGAATTGGGCAAACTG 60.038 55.000 0.00 0.00 0.00 3.16
2637 4982 1.047801 GGTGGAATTGGGCAAACTGT 58.952 50.000 0.00 0.00 0.00 3.55
2638 4983 1.416030 GGTGGAATTGGGCAAACTGTT 59.584 47.619 0.00 0.00 0.00 3.16
2639 4984 2.547855 GGTGGAATTGGGCAAACTGTTC 60.548 50.000 0.00 0.00 0.00 3.18
2640 4985 2.102252 GTGGAATTGGGCAAACTGTTCA 59.898 45.455 0.00 0.00 0.00 3.18
2641 4986 2.768527 TGGAATTGGGCAAACTGTTCAA 59.231 40.909 0.00 0.00 0.00 2.69
2642 4987 3.198635 TGGAATTGGGCAAACTGTTCAAA 59.801 39.130 0.00 0.00 0.00 2.69
2643 4988 4.141528 TGGAATTGGGCAAACTGTTCAAAT 60.142 37.500 0.00 0.00 0.00 2.32
2644 4989 4.213906 GGAATTGGGCAAACTGTTCAAATG 59.786 41.667 0.00 0.00 0.00 2.32
2645 4990 3.902881 TTGGGCAAACTGTTCAAATGT 57.097 38.095 0.00 0.00 0.00 2.71
2646 4991 3.176552 TGGGCAAACTGTTCAAATGTG 57.823 42.857 0.00 0.00 0.00 3.21
2647 4992 2.158986 TGGGCAAACTGTTCAAATGTGG 60.159 45.455 0.00 0.00 0.00 4.17
2648 4993 1.866601 GGCAAACTGTTCAAATGTGGC 59.133 47.619 0.00 0.00 0.00 5.01
2649 4994 1.866601 GCAAACTGTTCAAATGTGGCC 59.133 47.619 0.00 0.00 0.00 5.36
2650 4995 2.126467 CAAACTGTTCAAATGTGGCCG 58.874 47.619 0.00 0.00 0.00 6.13
2651 4996 0.673437 AACTGTTCAAATGTGGCCGG 59.327 50.000 0.00 0.00 0.00 6.13
2652 4997 1.178534 ACTGTTCAAATGTGGCCGGG 61.179 55.000 2.18 0.00 0.00 5.73
2653 4998 1.152652 TGTTCAAATGTGGCCGGGT 60.153 52.632 2.18 0.00 0.00 5.28
2654 4999 1.175983 TGTTCAAATGTGGCCGGGTC 61.176 55.000 2.18 0.00 0.00 4.46
2655 5000 0.893727 GTTCAAATGTGGCCGGGTCT 60.894 55.000 2.18 0.00 0.00 3.85
2656 5001 0.178975 TTCAAATGTGGCCGGGTCTT 60.179 50.000 2.18 0.00 0.00 3.01
2657 5002 0.893270 TCAAATGTGGCCGGGTCTTG 60.893 55.000 2.18 0.00 0.00 3.02
2658 5003 1.606313 AAATGTGGCCGGGTCTTGG 60.606 57.895 2.18 0.00 0.00 3.61
2659 5004 2.366153 AAATGTGGCCGGGTCTTGGT 62.366 55.000 2.18 0.00 0.00 3.67
2660 5005 3.567579 ATGTGGCCGGGTCTTGGTG 62.568 63.158 2.18 0.00 0.00 4.17
2661 5006 4.265056 GTGGCCGGGTCTTGGTGT 62.265 66.667 2.18 0.00 0.00 4.16
2662 5007 2.527123 TGGCCGGGTCTTGGTGTA 60.527 61.111 2.18 0.00 0.00 2.90
2663 5008 2.267961 GGCCGGGTCTTGGTGTAG 59.732 66.667 2.18 0.00 0.00 2.74
2664 5009 2.267961 GCCGGGTCTTGGTGTAGG 59.732 66.667 2.18 0.00 0.00 3.18
2665 5010 2.987125 CCGGGTCTTGGTGTAGGG 59.013 66.667 0.00 0.00 0.00 3.53
2666 5011 2.666098 CCGGGTCTTGGTGTAGGGG 61.666 68.421 0.00 0.00 0.00 4.79
2667 5012 2.675371 GGGTCTTGGTGTAGGGGC 59.325 66.667 0.00 0.00 0.00 5.80
2668 5013 1.923909 GGGTCTTGGTGTAGGGGCT 60.924 63.158 0.00 0.00 0.00 5.19
2669 5014 1.602771 GGTCTTGGTGTAGGGGCTC 59.397 63.158 0.00 0.00 0.00 4.70
2670 5015 1.198759 GGTCTTGGTGTAGGGGCTCA 61.199 60.000 0.00 0.00 0.00 4.26
2671 5016 0.690762 GTCTTGGTGTAGGGGCTCAA 59.309 55.000 0.00 0.00 0.00 3.02
2672 5017 1.282157 GTCTTGGTGTAGGGGCTCAAT 59.718 52.381 0.00 0.00 0.00 2.57
2673 5018 2.504175 GTCTTGGTGTAGGGGCTCAATA 59.496 50.000 0.00 0.00 0.00 1.90
2674 5019 3.136626 GTCTTGGTGTAGGGGCTCAATAT 59.863 47.826 0.00 0.00 0.00 1.28
2675 5020 3.785887 TCTTGGTGTAGGGGCTCAATATT 59.214 43.478 0.00 0.00 0.00 1.28
2676 5021 4.229582 TCTTGGTGTAGGGGCTCAATATTT 59.770 41.667 0.00 0.00 0.00 1.40
2677 5022 4.601406 TGGTGTAGGGGCTCAATATTTT 57.399 40.909 0.00 0.00 0.00 1.82
2678 5023 4.532834 TGGTGTAGGGGCTCAATATTTTC 58.467 43.478 0.00 0.00 0.00 2.29
2679 5024 4.017958 TGGTGTAGGGGCTCAATATTTTCA 60.018 41.667 0.00 0.00 0.00 2.69
2680 5025 4.338400 GGTGTAGGGGCTCAATATTTTCAC 59.662 45.833 0.00 0.00 0.00 3.18
2681 5026 4.338400 GTGTAGGGGCTCAATATTTTCACC 59.662 45.833 0.00 0.00 0.00 4.02
2682 5027 4.229582 TGTAGGGGCTCAATATTTTCACCT 59.770 41.667 7.19 7.19 0.00 4.00
2683 5028 4.337264 AGGGGCTCAATATTTTCACCTT 57.663 40.909 0.00 0.00 0.00 3.50
2684 5029 4.026052 AGGGGCTCAATATTTTCACCTTG 58.974 43.478 0.00 0.00 0.00 3.61
2685 5030 4.023291 GGGGCTCAATATTTTCACCTTGA 58.977 43.478 0.00 0.00 0.00 3.02
2686 5031 4.651045 GGGGCTCAATATTTTCACCTTGAT 59.349 41.667 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 6.883756 TGTGGTAGATAACATCTTTTCATGCA 59.116 34.615 0.00 0.00 40.76 3.96
251 252 2.223641 CGCACAGCCAAAATGAGCATAT 60.224 45.455 0.00 0.00 34.41 1.78
272 273 8.870242 GTGAATGTAACACGATAAACTTTACC 57.130 34.615 0.00 0.00 0.00 2.85
651 678 1.623811 CCGGATCGGGGATTCAGTTAT 59.376 52.381 11.44 0.00 44.15 1.89
654 681 3.550974 CCGGATCGGGGATTCAGT 58.449 61.111 11.44 0.00 44.15 3.41
714 741 4.269183 TGGTTGTGTTTGTCTGATGTTCT 58.731 39.130 0.00 0.00 0.00 3.01
725 752 6.627395 TGACCTACTAATTGGTTGTGTTTG 57.373 37.500 0.00 0.00 36.59 2.93
793 828 2.501492 GCCAGCTTCATCAGGCAAT 58.499 52.632 5.66 0.00 46.26 3.56
880 917 8.355169 TCTCTTGAGTTTGAATTTGAATTGAGG 58.645 33.333 0.00 0.00 0.00 3.86
914 951 8.721019 TTGCTCTTTTGACTTTGAATTTGAAT 57.279 26.923 0.00 0.00 0.00 2.57
915 952 8.605746 CATTGCTCTTTTGACTTTGAATTTGAA 58.394 29.630 0.00 0.00 0.00 2.69
917 954 7.849026 CACATTGCTCTTTTGACTTTGAATTTG 59.151 33.333 0.00 0.00 0.00 2.32
921 958 5.350633 CCACATTGCTCTTTTGACTTTGAA 58.649 37.500 0.00 0.00 0.00 2.69
927 964 3.364964 CGTACCCACATTGCTCTTTTGAC 60.365 47.826 0.00 0.00 0.00 3.18
948 1020 3.129462 TCCTCTTCATCTGCTTCAGTACG 59.871 47.826 0.00 0.00 32.61 3.67
950 1022 4.348486 AGTCCTCTTCATCTGCTTCAGTA 58.652 43.478 0.00 0.00 32.61 2.74
1333 3640 1.143183 CTATTAGCCCACCGTGCGT 59.857 57.895 0.00 0.00 0.00 5.24
1334 3641 2.244651 GCTATTAGCCCACCGTGCG 61.245 63.158 4.21 0.00 34.48 5.34
1335 3642 2.244651 CGCTATTAGCCCACCGTGC 61.245 63.158 10.04 0.00 38.18 5.34
1348 3655 4.570663 GCAGTCGTCGCCCGCTAT 62.571 66.667 0.00 0.00 36.19 2.97
1637 3959 1.905215 CTCCTGTCATCTGTCCTTGGT 59.095 52.381 0.00 0.00 0.00 3.67
1643 3965 0.532573 TTCCGCTCCTGTCATCTGTC 59.467 55.000 0.00 0.00 0.00 3.51
1646 3968 1.686052 GATCTTCCGCTCCTGTCATCT 59.314 52.381 0.00 0.00 0.00 2.90
1668 3994 1.473278 GACTAGCCAGTGTAGCTTCGT 59.527 52.381 0.00 0.00 41.83 3.85
1669 3995 1.532090 CGACTAGCCAGTGTAGCTTCG 60.532 57.143 0.00 0.98 41.83 3.79
1670 3996 1.799548 GCGACTAGCCAGTGTAGCTTC 60.800 57.143 0.00 0.00 41.83 3.86
1671 3997 0.173708 GCGACTAGCCAGTGTAGCTT 59.826 55.000 0.00 0.00 41.83 3.74
1748 4074 6.583427 TGTAATTTCGATACGATAATCGGTGG 59.417 38.462 15.62 0.00 46.81 4.61
1815 4141 1.269309 CGCTCCAAGATCCGACCTTAG 60.269 57.143 0.00 0.00 0.00 2.18
2030 4371 6.105333 GGCATGTGCATAAAAATCCTTACAA 58.895 36.000 7.36 0.00 44.36 2.41
2061 4405 8.736751 TCCTACAAGAATTAATTTCGCAAAAC 57.263 30.769 1.43 0.00 39.46 2.43
2126 4470 7.067737 CAGGACCAAAGGTTGTTTTAGAGTTTA 59.932 37.037 0.00 0.00 35.25 2.01
2127 4471 5.955959 AGGACCAAAGGTTGTTTTAGAGTTT 59.044 36.000 0.00 0.00 35.25 2.66
2128 4472 5.359860 CAGGACCAAAGGTTGTTTTAGAGTT 59.640 40.000 0.00 0.00 35.25 3.01
2129 4473 4.887655 CAGGACCAAAGGTTGTTTTAGAGT 59.112 41.667 0.00 0.00 35.25 3.24
2130 4474 5.008712 GTCAGGACCAAAGGTTGTTTTAGAG 59.991 44.000 0.00 0.00 35.25 2.43
2131 4475 4.885325 GTCAGGACCAAAGGTTGTTTTAGA 59.115 41.667 0.00 0.00 35.25 2.10
2132 4476 5.183014 GTCAGGACCAAAGGTTGTTTTAG 57.817 43.478 0.00 0.00 35.25 1.85
2175 4519 3.555966 CAAACTTTGGAGGACTCAAGGT 58.444 45.455 1.32 0.00 36.26 3.50
2203 4548 5.655532 AGTTGGCCTAATTCTTCTAGTCGTA 59.344 40.000 3.32 0.00 0.00 3.43
2205 4550 5.012328 AGTTGGCCTAATTCTTCTAGTCG 57.988 43.478 3.32 0.00 0.00 4.18
2222 4567 3.039202 GATTGCGCGGTGGAGTTGG 62.039 63.158 8.83 0.00 0.00 3.77
2223 4568 2.480555 GATTGCGCGGTGGAGTTG 59.519 61.111 8.83 0.00 0.00 3.16
2224 4569 2.746277 GGATTGCGCGGTGGAGTT 60.746 61.111 8.83 0.00 0.00 3.01
2225 4570 4.778143 GGGATTGCGCGGTGGAGT 62.778 66.667 8.83 0.00 0.00 3.85
2226 4571 4.776322 TGGGATTGCGCGGTGGAG 62.776 66.667 8.83 0.00 0.00 3.86
2227 4572 3.851897 TTTGGGATTGCGCGGTGGA 62.852 57.895 8.83 0.00 0.00 4.02
2228 4573 3.369400 TTTGGGATTGCGCGGTGG 61.369 61.111 8.83 0.00 0.00 4.61
2229 4574 2.126502 GTTTGGGATTGCGCGGTG 60.127 61.111 8.83 0.00 0.00 4.94
2230 4575 3.732892 CGTTTGGGATTGCGCGGT 61.733 61.111 8.83 0.00 0.00 5.68
2231 4576 4.474846 CCGTTTGGGATTGCGCGG 62.475 66.667 8.83 0.00 38.47 6.46
2232 4577 3.427425 TCCGTTTGGGATTGCGCG 61.427 61.111 0.00 0.00 40.94 6.86
2247 4592 1.226030 CCCAGACAAAACGGACGTCC 61.226 60.000 25.28 25.28 0.00 4.79
2248 4593 0.531311 ACCCAGACAAAACGGACGTC 60.531 55.000 7.13 7.13 0.00 4.34
2249 4594 0.107557 AACCCAGACAAAACGGACGT 60.108 50.000 0.00 0.00 0.00 4.34
2250 4595 0.584876 GAACCCAGACAAAACGGACG 59.415 55.000 0.00 0.00 0.00 4.79
2251 4596 1.963172 AGAACCCAGACAAAACGGAC 58.037 50.000 0.00 0.00 0.00 4.79
2252 4597 3.307199 GGATAGAACCCAGACAAAACGGA 60.307 47.826 0.00 0.00 0.00 4.69
2253 4598 3.007635 GGATAGAACCCAGACAAAACGG 58.992 50.000 0.00 0.00 0.00 4.44
2254 4599 2.671396 CGGATAGAACCCAGACAAAACG 59.329 50.000 0.00 0.00 0.00 3.60
2255 4600 3.671716 ACGGATAGAACCCAGACAAAAC 58.328 45.455 0.00 0.00 0.00 2.43
2256 4601 4.360951 AACGGATAGAACCCAGACAAAA 57.639 40.909 0.00 0.00 0.00 2.44
2257 4602 4.069304 CAAACGGATAGAACCCAGACAAA 58.931 43.478 0.00 0.00 0.00 2.83
2258 4603 3.558321 CCAAACGGATAGAACCCAGACAA 60.558 47.826 0.00 0.00 0.00 3.18
2259 4604 2.027561 CCAAACGGATAGAACCCAGACA 60.028 50.000 0.00 0.00 0.00 3.41
2260 4605 2.235402 TCCAAACGGATAGAACCCAGAC 59.765 50.000 0.00 0.00 0.00 3.51
2261 4606 2.542550 TCCAAACGGATAGAACCCAGA 58.457 47.619 0.00 0.00 0.00 3.86
2262 4607 3.560636 ATCCAAACGGATAGAACCCAG 57.439 47.619 0.00 0.00 41.76 4.45
2270 4615 4.202524 CCCAAATCCCTATCCAAACGGATA 60.203 45.833 1.44 1.44 41.76 2.59
2271 4616 3.436470 CCCAAATCCCTATCCAAACGGAT 60.436 47.826 0.00 0.00 45.62 4.18
2272 4617 2.092103 CCCAAATCCCTATCCAAACGGA 60.092 50.000 0.00 0.00 36.85 4.69
2273 4618 2.306847 CCCAAATCCCTATCCAAACGG 58.693 52.381 0.00 0.00 0.00 4.44
2274 4619 2.306847 CCCCAAATCCCTATCCAAACG 58.693 52.381 0.00 0.00 0.00 3.60
2275 4620 3.296854 GACCCCAAATCCCTATCCAAAC 58.703 50.000 0.00 0.00 0.00 2.93
2276 4621 2.092103 CGACCCCAAATCCCTATCCAAA 60.092 50.000 0.00 0.00 0.00 3.28
2277 4622 1.493022 CGACCCCAAATCCCTATCCAA 59.507 52.381 0.00 0.00 0.00 3.53
2278 4623 1.136828 CGACCCCAAATCCCTATCCA 58.863 55.000 0.00 0.00 0.00 3.41
2279 4624 1.137697 ACGACCCCAAATCCCTATCC 58.862 55.000 0.00 0.00 0.00 2.59
2280 4625 1.489230 ACACGACCCCAAATCCCTATC 59.511 52.381 0.00 0.00 0.00 2.08
2281 4626 1.489230 GACACGACCCCAAATCCCTAT 59.511 52.381 0.00 0.00 0.00 2.57
2282 4627 0.906775 GACACGACCCCAAATCCCTA 59.093 55.000 0.00 0.00 0.00 3.53
2283 4628 1.683441 GACACGACCCCAAATCCCT 59.317 57.895 0.00 0.00 0.00 4.20
2284 4629 1.378119 GGACACGACCCCAAATCCC 60.378 63.158 0.00 0.00 0.00 3.85
2285 4630 1.743995 CGGACACGACCCCAAATCC 60.744 63.158 0.00 0.00 44.60 3.01
2286 4631 1.743995 CCGGACACGACCCCAAATC 60.744 63.158 0.00 0.00 44.60 2.17
2287 4632 2.349755 CCGGACACGACCCCAAAT 59.650 61.111 0.00 0.00 44.60 2.32
2288 4633 3.943691 CCCGGACACGACCCCAAA 61.944 66.667 0.73 0.00 44.60 3.28
2302 4647 4.838152 CATCCCAGGACACGCCCG 62.838 72.222 0.00 0.00 37.37 6.13
2306 4651 4.082523 ACCGCATCCCAGGACACG 62.083 66.667 3.74 3.74 0.00 4.49
2307 4652 2.436646 CACCGCATCCCAGGACAC 60.437 66.667 0.00 0.00 0.00 3.67
2308 4653 3.716195 CCACCGCATCCCAGGACA 61.716 66.667 0.00 0.00 0.00 4.02
2312 4657 4.511246 ATGGCCACCGCATCCCAG 62.511 66.667 8.16 0.00 36.38 4.45
2313 4658 4.818863 CATGGCCACCGCATCCCA 62.819 66.667 8.16 0.00 36.38 4.37
2347 4692 0.688749 AGGATGGGGCAAAAGGATGC 60.689 55.000 0.00 0.00 45.67 3.91
2348 4693 1.117150 CAGGATGGGGCAAAAGGATG 58.883 55.000 0.00 0.00 0.00 3.51
2349 4694 0.712380 ACAGGATGGGGCAAAAGGAT 59.288 50.000 0.00 0.00 43.62 3.24
2350 4695 0.039618 GACAGGATGGGGCAAAAGGA 59.960 55.000 0.00 0.00 43.62 3.36
2351 4696 0.972471 GGACAGGATGGGGCAAAAGG 60.972 60.000 0.00 0.00 43.62 3.11
2352 4697 1.315257 CGGACAGGATGGGGCAAAAG 61.315 60.000 0.00 0.00 43.62 2.27
2353 4698 1.304052 CGGACAGGATGGGGCAAAA 60.304 57.895 0.00 0.00 43.62 2.44
2354 4699 2.354729 CGGACAGGATGGGGCAAA 59.645 61.111 0.00 0.00 43.62 3.68
2355 4700 2.933287 ACGGACAGGATGGGGCAA 60.933 61.111 0.00 0.00 43.62 4.52
2356 4701 3.399181 GACGGACAGGATGGGGCA 61.399 66.667 0.00 0.00 43.62 5.36
2357 4702 3.391665 CTGACGGACAGGATGGGGC 62.392 68.421 0.00 0.00 43.62 5.80
2358 4703 2.903357 CTGACGGACAGGATGGGG 59.097 66.667 0.00 0.00 43.62 4.96
2367 4712 0.243636 CATTTTTGGCCCTGACGGAC 59.756 55.000 0.00 0.00 42.05 4.79
2368 4713 1.531739 GCATTTTTGGCCCTGACGGA 61.532 55.000 0.00 0.00 0.00 4.69
2369 4714 1.079888 GCATTTTTGGCCCTGACGG 60.080 57.895 0.00 0.00 0.00 4.79
2370 4715 1.079888 GGCATTTTTGGCCCTGACG 60.080 57.895 0.00 0.00 45.87 4.35
2377 4722 4.581077 TGAAAATTTGGGCATTTTTGGC 57.419 36.364 0.00 0.00 36.64 4.52
2378 4723 6.328641 TGATGAAAATTTGGGCATTTTTGG 57.671 33.333 0.00 0.00 36.64 3.28
2379 4724 8.541312 GTTTTGATGAAAATTTGGGCATTTTTG 58.459 29.630 0.00 0.00 36.64 2.44
2380 4725 8.476447 AGTTTTGATGAAAATTTGGGCATTTTT 58.524 25.926 0.00 0.00 36.64 1.94
2381 4726 8.009622 AGTTTTGATGAAAATTTGGGCATTTT 57.990 26.923 0.00 0.00 38.75 1.82
2382 4727 7.585579 AGTTTTGATGAAAATTTGGGCATTT 57.414 28.000 0.00 0.00 33.63 2.32
2383 4728 7.938490 ACTAGTTTTGATGAAAATTTGGGCATT 59.062 29.630 0.00 0.00 33.63 3.56
2384 4729 7.452562 ACTAGTTTTGATGAAAATTTGGGCAT 58.547 30.769 0.00 0.00 33.63 4.40
2385 4730 6.825610 ACTAGTTTTGATGAAAATTTGGGCA 58.174 32.000 0.00 0.00 33.63 5.36
2386 4731 7.728847 AACTAGTTTTGATGAAAATTTGGGC 57.271 32.000 1.12 0.00 33.63 5.36
2387 4732 8.773645 GGAAACTAGTTTTGATGAAAATTTGGG 58.226 33.333 21.40 0.00 33.63 4.12
2388 4733 9.323985 TGGAAACTAGTTTTGATGAAAATTTGG 57.676 29.630 21.40 0.00 33.63 3.28
2402 4747 8.710239 ACAAATATTTGGGTTGGAAACTAGTTT 58.290 29.630 27.43 20.67 43.10 2.66
2403 4748 8.257602 ACAAATATTTGGGTTGGAAACTAGTT 57.742 30.769 27.43 1.12 43.10 2.24
2404 4749 7.728532 AGACAAATATTTGGGTTGGAAACTAGT 59.271 33.333 27.43 5.67 43.10 2.57
2405 4750 8.028938 CAGACAAATATTTGGGTTGGAAACTAG 58.971 37.037 27.43 2.64 43.10 2.57
2406 4751 7.726291 TCAGACAAATATTTGGGTTGGAAACTA 59.274 33.333 27.43 7.14 43.10 2.24
2407 4752 6.553100 TCAGACAAATATTTGGGTTGGAAACT 59.447 34.615 27.43 6.71 43.10 2.66
2408 4753 6.754193 TCAGACAAATATTTGGGTTGGAAAC 58.246 36.000 27.43 10.22 42.94 2.78
2409 4754 6.985653 TCAGACAAATATTTGGGTTGGAAA 57.014 33.333 27.43 8.25 42.34 3.13
2410 4755 6.985653 TTCAGACAAATATTTGGGTTGGAA 57.014 33.333 27.43 19.70 42.34 3.53
2411 4756 6.985653 TTTCAGACAAATATTTGGGTTGGA 57.014 33.333 27.43 16.09 42.34 3.53
2412 4757 8.620116 AATTTTCAGACAAATATTTGGGTTGG 57.380 30.769 27.43 14.36 42.34 3.77
2478 4823 9.974980 ACAATTTCGATTTGGTTGTAAAACTAT 57.025 25.926 11.83 0.00 32.01 2.12
2479 4824 9.453325 GACAATTTCGATTTGGTTGTAAAACTA 57.547 29.630 11.83 0.00 32.01 2.24
2480 4825 8.194769 AGACAATTTCGATTTGGTTGTAAAACT 58.805 29.630 11.83 0.44 32.01 2.66
2481 4826 8.347729 AGACAATTTCGATTTGGTTGTAAAAC 57.652 30.769 11.83 0.00 33.55 2.43
2482 4827 8.812329 CAAGACAATTTCGATTTGGTTGTAAAA 58.188 29.630 11.83 0.00 33.55 1.52
2483 4828 8.191446 TCAAGACAATTTCGATTTGGTTGTAAA 58.809 29.630 16.73 0.00 33.55 2.01
2484 4829 7.646130 GTCAAGACAATTTCGATTTGGTTGTAA 59.354 33.333 16.73 0.00 33.55 2.41
2485 4830 7.012894 AGTCAAGACAATTTCGATTTGGTTGTA 59.987 33.333 16.73 8.34 33.55 2.41
2486 4831 5.977129 GTCAAGACAATTTCGATTTGGTTGT 59.023 36.000 16.73 10.87 35.87 3.32
2487 4832 6.208644 AGTCAAGACAATTTCGATTTGGTTG 58.791 36.000 11.83 13.00 0.00 3.77
2488 4833 6.391227 AGTCAAGACAATTTCGATTTGGTT 57.609 33.333 11.83 4.09 0.00 3.67
2489 4834 7.504924 TTAGTCAAGACAATTTCGATTTGGT 57.495 32.000 11.83 0.00 0.00 3.67
2490 4835 7.860373 TGTTTAGTCAAGACAATTTCGATTTGG 59.140 33.333 11.83 0.00 0.00 3.28
2491 4836 8.781067 TGTTTAGTCAAGACAATTTCGATTTG 57.219 30.769 2.72 6.98 0.00 2.32
2501 4846 8.573035 GGTCCATTTTATGTTTAGTCAAGACAA 58.427 33.333 2.72 0.00 0.00 3.18
2502 4847 7.721842 TGGTCCATTTTATGTTTAGTCAAGACA 59.278 33.333 2.72 0.00 0.00 3.41
2503 4848 8.106247 TGGTCCATTTTATGTTTAGTCAAGAC 57.894 34.615 0.00 0.00 0.00 3.01
2504 4849 8.698973 TTGGTCCATTTTATGTTTAGTCAAGA 57.301 30.769 0.00 0.00 0.00 3.02
2507 4852 9.521841 TGTATTGGTCCATTTTATGTTTAGTCA 57.478 29.630 0.00 0.00 0.00 3.41
2538 4883 3.667922 GTGGGATCACATTGGCAACCAA 61.668 50.000 0.00 0.77 43.13 3.67
2539 4884 0.113972 TGGGATCACATTGGCAACCA 59.886 50.000 0.00 0.00 0.00 3.67
2540 4885 0.532115 GTGGGATCACATTGGCAACC 59.468 55.000 0.00 0.00 43.13 3.77
2550 4895 0.602638 TTGAGCACGTGTGGGATCAC 60.603 55.000 18.38 0.00 43.87 3.06
2551 4896 0.602638 GTTGAGCACGTGTGGGATCA 60.603 55.000 18.38 10.83 0.00 2.92
2552 4897 1.298859 GGTTGAGCACGTGTGGGATC 61.299 60.000 18.38 8.42 0.00 3.36
2553 4898 1.302511 GGTTGAGCACGTGTGGGAT 60.303 57.895 18.38 0.00 0.00 3.85
2554 4899 2.110213 GGTTGAGCACGTGTGGGA 59.890 61.111 18.38 0.00 0.00 4.37
2555 4900 1.785041 CTTGGTTGAGCACGTGTGGG 61.785 60.000 18.38 0.00 0.00 4.61
2556 4901 1.095228 ACTTGGTTGAGCACGTGTGG 61.095 55.000 18.38 0.00 0.00 4.17
2557 4902 0.304705 GACTTGGTTGAGCACGTGTG 59.695 55.000 18.38 0.00 0.00 3.82
2558 4903 0.107897 TGACTTGGTTGAGCACGTGT 60.108 50.000 18.38 3.69 0.00 4.49
2559 4904 1.229428 ATGACTTGGTTGAGCACGTG 58.771 50.000 12.28 12.28 0.00 4.49
2560 4905 1.967319 AATGACTTGGTTGAGCACGT 58.033 45.000 0.00 0.00 0.00 4.49
2561 4906 3.044986 CAAAATGACTTGGTTGAGCACG 58.955 45.455 0.00 0.00 0.00 5.34
2562 4907 4.293415 CTCAAAATGACTTGGTTGAGCAC 58.707 43.478 0.00 0.00 40.22 4.40
2563 4908 3.318839 CCTCAAAATGACTTGGTTGAGCA 59.681 43.478 6.72 0.00 43.62 4.26
2564 4909 3.569701 TCCTCAAAATGACTTGGTTGAGC 59.430 43.478 6.72 0.00 43.62 4.26
2565 4910 5.972107 ATCCTCAAAATGACTTGGTTGAG 57.028 39.130 5.48 5.48 44.25 3.02
2566 4911 5.832595 TGAATCCTCAAAATGACTTGGTTGA 59.167 36.000 0.00 0.00 0.00 3.18
2567 4912 6.088016 TGAATCCTCAAAATGACTTGGTTG 57.912 37.500 0.00 0.00 0.00 3.77
2568 4913 6.729690 TTGAATCCTCAAAATGACTTGGTT 57.270 33.333 0.00 0.00 38.65 3.67
2569 4914 6.729690 TTTGAATCCTCAAAATGACTTGGT 57.270 33.333 0.00 0.00 46.24 3.67
2578 4923 9.253295 TTGGCACACTCATTTGAATCCTCAAAA 62.253 37.037 4.54 0.00 46.55 2.44
2580 4925 3.507233 GGCACACTCATTTGAATCCTCAA 59.493 43.478 0.00 0.00 39.87 3.02
2581 4926 3.084039 GGCACACTCATTTGAATCCTCA 58.916 45.455 0.00 0.00 0.00 3.86
2582 4927 3.084039 TGGCACACTCATTTGAATCCTC 58.916 45.455 0.00 0.00 0.00 3.71
2583 4928 3.159213 TGGCACACTCATTTGAATCCT 57.841 42.857 0.00 0.00 0.00 3.24
2584 4929 3.940209 TTGGCACACTCATTTGAATCC 57.060 42.857 0.00 0.00 39.29 3.01
2585 4930 5.063180 TGATTGGCACACTCATTTGAATC 57.937 39.130 0.00 0.00 43.06 2.52
2598 4943 0.097674 GTGAGATGCGTGATTGGCAC 59.902 55.000 0.00 0.00 44.23 5.01
2599 4944 1.360931 CGTGAGATGCGTGATTGGCA 61.361 55.000 0.00 0.00 45.71 4.92
2600 4945 1.349627 CGTGAGATGCGTGATTGGC 59.650 57.895 0.00 0.00 0.00 4.52
2601 4946 0.740868 ACCGTGAGATGCGTGATTGG 60.741 55.000 0.00 0.00 0.00 3.16
2602 4947 0.371301 CACCGTGAGATGCGTGATTG 59.629 55.000 0.00 0.00 0.00 2.67
2603 4948 0.740868 CCACCGTGAGATGCGTGATT 60.741 55.000 0.00 0.00 0.00 2.57
2604 4949 1.153568 CCACCGTGAGATGCGTGAT 60.154 57.895 0.00 0.00 0.00 3.06
2605 4950 1.811645 TTCCACCGTGAGATGCGTGA 61.812 55.000 0.00 0.00 0.00 4.35
2606 4951 0.740868 ATTCCACCGTGAGATGCGTG 60.741 55.000 0.00 0.00 0.00 5.34
2607 4952 0.036388 AATTCCACCGTGAGATGCGT 60.036 50.000 0.00 0.00 0.00 5.24
2608 4953 0.374758 CAATTCCACCGTGAGATGCG 59.625 55.000 0.00 0.00 0.00 4.73
2609 4954 0.734889 CCAATTCCACCGTGAGATGC 59.265 55.000 0.00 0.00 0.00 3.91
2610 4955 1.382522 CCCAATTCCACCGTGAGATG 58.617 55.000 0.00 0.00 0.00 2.90
2611 4956 0.394352 GCCCAATTCCACCGTGAGAT 60.394 55.000 0.00 0.00 0.00 2.75
2612 4957 1.002624 GCCCAATTCCACCGTGAGA 60.003 57.895 0.00 0.00 0.00 3.27
2613 4958 0.893270 TTGCCCAATTCCACCGTGAG 60.893 55.000 0.00 0.00 0.00 3.51
2614 4959 0.468214 TTTGCCCAATTCCACCGTGA 60.468 50.000 0.00 0.00 0.00 4.35
2615 4960 0.319469 GTTTGCCCAATTCCACCGTG 60.319 55.000 0.00 0.00 0.00 4.94
2616 4961 0.469144 AGTTTGCCCAATTCCACCGT 60.469 50.000 0.00 0.00 0.00 4.83
2617 4962 0.038343 CAGTTTGCCCAATTCCACCG 60.038 55.000 0.00 0.00 0.00 4.94
2618 4963 1.047801 ACAGTTTGCCCAATTCCACC 58.952 50.000 0.00 0.00 0.00 4.61
2619 4964 2.102252 TGAACAGTTTGCCCAATTCCAC 59.898 45.455 0.00 0.00 0.00 4.02
2620 4965 2.392662 TGAACAGTTTGCCCAATTCCA 58.607 42.857 0.00 0.00 0.00 3.53
2621 4966 3.467374 TTGAACAGTTTGCCCAATTCC 57.533 42.857 0.00 0.00 0.00 3.01
2622 4967 4.815846 ACATTTGAACAGTTTGCCCAATTC 59.184 37.500 0.00 0.00 0.00 2.17
2623 4968 4.575645 CACATTTGAACAGTTTGCCCAATT 59.424 37.500 0.00 0.00 0.00 2.32
2624 4969 4.128643 CACATTTGAACAGTTTGCCCAAT 58.871 39.130 0.00 0.00 0.00 3.16
2625 4970 3.529533 CACATTTGAACAGTTTGCCCAA 58.470 40.909 0.00 0.00 0.00 4.12
2626 4971 2.158986 CCACATTTGAACAGTTTGCCCA 60.159 45.455 0.00 0.00 0.00 5.36
2627 4972 2.482864 CCACATTTGAACAGTTTGCCC 58.517 47.619 0.00 0.00 0.00 5.36
2628 4973 1.866601 GCCACATTTGAACAGTTTGCC 59.133 47.619 0.00 0.00 0.00 4.52
2629 4974 1.866601 GGCCACATTTGAACAGTTTGC 59.133 47.619 0.00 0.00 0.00 3.68
2630 4975 2.126467 CGGCCACATTTGAACAGTTTG 58.874 47.619 2.24 0.00 0.00 2.93
2631 4976 1.068434 CCGGCCACATTTGAACAGTTT 59.932 47.619 2.24 0.00 0.00 2.66
2632 4977 0.673437 CCGGCCACATTTGAACAGTT 59.327 50.000 2.24 0.00 0.00 3.16
2633 4978 1.178534 CCCGGCCACATTTGAACAGT 61.179 55.000 2.24 0.00 0.00 3.55
2634 4979 1.178534 ACCCGGCCACATTTGAACAG 61.179 55.000 2.24 0.00 0.00 3.16
2635 4980 1.152652 ACCCGGCCACATTTGAACA 60.153 52.632 2.24 0.00 0.00 3.18
2636 4981 0.893727 AGACCCGGCCACATTTGAAC 60.894 55.000 2.24 0.00 0.00 3.18
2637 4982 0.178975 AAGACCCGGCCACATTTGAA 60.179 50.000 2.24 0.00 0.00 2.69
2638 4983 0.893270 CAAGACCCGGCCACATTTGA 60.893 55.000 2.24 0.00 0.00 2.69
2639 4984 1.586028 CAAGACCCGGCCACATTTG 59.414 57.895 2.24 0.00 0.00 2.32
2640 4985 1.606313 CCAAGACCCGGCCACATTT 60.606 57.895 2.24 0.00 0.00 2.32
2641 4986 2.035626 CCAAGACCCGGCCACATT 59.964 61.111 2.24 0.00 0.00 2.71
2642 4987 3.256960 ACCAAGACCCGGCCACAT 61.257 61.111 2.24 0.00 0.00 3.21
2643 4988 4.263572 CACCAAGACCCGGCCACA 62.264 66.667 2.24 0.00 0.00 4.17
2644 4989 2.798148 CTACACCAAGACCCGGCCAC 62.798 65.000 2.24 0.00 0.00 5.01
2645 4990 2.527123 TACACCAAGACCCGGCCA 60.527 61.111 2.24 0.00 0.00 5.36
2646 4991 2.267961 CTACACCAAGACCCGGCC 59.732 66.667 0.00 0.00 0.00 6.13
2647 4992 2.267961 CCTACACCAAGACCCGGC 59.732 66.667 0.00 0.00 0.00 6.13
2648 4993 2.666098 CCCCTACACCAAGACCCGG 61.666 68.421 0.00 0.00 0.00 5.73
2649 4994 2.987125 CCCCTACACCAAGACCCG 59.013 66.667 0.00 0.00 0.00 5.28
2650 4995 1.911702 GAGCCCCTACACCAAGACCC 61.912 65.000 0.00 0.00 0.00 4.46
2651 4996 1.198759 TGAGCCCCTACACCAAGACC 61.199 60.000 0.00 0.00 0.00 3.85
2652 4997 0.690762 TTGAGCCCCTACACCAAGAC 59.309 55.000 0.00 0.00 0.00 3.01
2653 4998 1.668826 ATTGAGCCCCTACACCAAGA 58.331 50.000 0.00 0.00 0.00 3.02
2654 4999 3.864789 ATATTGAGCCCCTACACCAAG 57.135 47.619 0.00 0.00 0.00 3.61
2655 5000 4.601406 AAATATTGAGCCCCTACACCAA 57.399 40.909 0.00 0.00 0.00 3.67
2656 5001 4.017958 TGAAAATATTGAGCCCCTACACCA 60.018 41.667 0.00 0.00 0.00 4.17
2657 5002 4.338400 GTGAAAATATTGAGCCCCTACACC 59.662 45.833 0.00 0.00 0.00 4.16
2658 5003 4.338400 GGTGAAAATATTGAGCCCCTACAC 59.662 45.833 0.00 0.00 0.00 2.90
2659 5004 4.229582 AGGTGAAAATATTGAGCCCCTACA 59.770 41.667 0.00 0.00 0.00 2.74
2660 5005 4.793201 AGGTGAAAATATTGAGCCCCTAC 58.207 43.478 0.00 0.00 0.00 3.18
2661 5006 5.044476 TCAAGGTGAAAATATTGAGCCCCTA 60.044 40.000 0.00 0.00 0.00 3.53
2662 5007 4.026052 CAAGGTGAAAATATTGAGCCCCT 58.974 43.478 0.00 0.00 0.00 4.79
2663 5008 4.023291 TCAAGGTGAAAATATTGAGCCCC 58.977 43.478 0.00 0.00 0.00 5.80
2664 5009 5.859205 ATCAAGGTGAAAATATTGAGCCC 57.141 39.130 0.00 0.00 35.31 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.