Multiple sequence alignment - TraesCS5A01G148200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G148200 chr5A 100.000 4548 0 0 1 4548 325991504 325996051 0.000000e+00 8399
1 TraesCS5A01G148200 chr5D 95.800 3714 102 15 827 4514 231326152 231322467 0.000000e+00 5945
2 TraesCS5A01G148200 chr5D 84.898 490 49 18 3 487 231326619 231326150 5.330000e-129 472
3 TraesCS5A01G148200 chr5B 95.721 2010 76 7 827 2831 275169127 275171131 0.000000e+00 3227
4 TraesCS5A01G148200 chr5B 94.047 1747 54 9 2820 4539 275171290 275173013 0.000000e+00 2604
5 TraesCS5A01G148200 chr5B 96.620 355 1 1 487 830 420179960 420179606 3.050000e-161 579
6 TraesCS5A01G148200 chr5B 86.263 495 56 9 1 487 275168639 275169129 1.120000e-145 527
7 TraesCS5A01G148200 chr6A 96.875 352 0 1 487 827 498326555 498326204 3.050000e-161 579
8 TraesCS5A01G148200 chr6A 88.169 355 24 8 489 827 614200302 614200654 1.520000e-109 407
9 TraesCS5A01G148200 chr2B 96.348 356 2 1 483 827 410502665 410503020 3.950000e-160 575
10 TraesCS5A01G148200 chr2B 95.429 350 5 6 487 827 478906481 478906828 8.600000e-152 547
11 TraesCS5A01G148200 chr2D 92.614 352 13 2 487 825 364981797 364981446 1.140000e-135 494
12 TraesCS5A01G148200 chr2D 92.286 350 16 5 488 826 194675589 194675240 1.900000e-133 486
13 TraesCS5A01G148200 chr7A 89.150 341 26 5 487 827 77471923 77471594 9.100000e-112 414
14 TraesCS5A01G148200 chrUn 86.082 194 27 0 181 374 223002327 223002134 4.610000e-50 209
15 TraesCS5A01G148200 chr3D 86.082 194 27 0 181 374 29493980 29493787 4.610000e-50 209
16 TraesCS5A01G148200 chr3D 86.082 194 27 0 181 374 29528909 29528716 4.610000e-50 209
17 TraesCS5A01G148200 chr3D 86.082 194 27 0 181 374 29565849 29565656 4.610000e-50 209
18 TraesCS5A01G148200 chr3D 82.710 214 35 2 161 374 6423394 6423183 6.010000e-44 189
19 TraesCS5A01G148200 chr1D 82.609 230 36 3 174 399 276244021 276244250 2.770000e-47 200
20 TraesCS5A01G148200 chr7D 83.000 200 32 2 173 371 135367556 135367754 3.610000e-41 180


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G148200 chr5A 325991504 325996051 4547 False 8399.000000 8399 100.000000 1 4548 1 chr5A.!!$F1 4547
1 TraesCS5A01G148200 chr5D 231322467 231326619 4152 True 3208.500000 5945 90.349000 3 4514 2 chr5D.!!$R1 4511
2 TraesCS5A01G148200 chr5B 275168639 275173013 4374 False 2119.333333 3227 92.010333 1 4539 3 chr5B.!!$F1 4538

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
592 602 0.036732 CTACTGCCTGCAGACCCAAA 59.963 55.000 24.88 3.24 46.30 3.28 F
660 670 0.105555 AGAGGATGAGCCAGAGAGGG 60.106 60.000 0.00 0.00 40.02 4.30 F
741 751 0.523072 CTGCTTCCGTTGGTTCCATG 59.477 55.000 0.00 0.00 0.00 3.66 F
823 833 0.525761 ATTGCCACCGTTGTACATGC 59.474 50.000 0.00 0.00 0.00 4.06 F
1251 1263 0.537653 TGATGCGGAACCCATACGAA 59.462 50.000 0.00 0.00 0.00 3.85 F
1672 1686 2.170187 AGGCTTTGTTTTCATGGTTGCA 59.830 40.909 0.00 0.00 0.00 4.08 F
2205 2221 3.244078 TGTGTTGTACCCTCACAGATCAC 60.244 47.826 9.65 0.00 37.20 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1436 1448 1.375780 GCCACCAATGCGCCAATTT 60.376 52.632 4.18 0.00 0.00 1.82 R
1981 1997 3.703556 TGGCCACCAAATTATACACCATG 59.296 43.478 0.00 0.00 0.00 3.66 R
2100 2116 5.468540 AATTTAGTTTGGCCACTCTTTCC 57.531 39.130 3.88 0.00 0.00 3.13 R
2755 2771 2.367241 TGCAGAGTGGCAGTAACTGTAA 59.633 45.455 11.38 0.58 39.25 2.41 R
3130 3317 2.432444 TGGATGTAAACTCGCCCTTTG 58.568 47.619 0.00 0.00 0.00 2.77 R
3374 3561 0.109412 CTCGGTCCACACGGTCTTAC 60.109 60.000 0.00 0.00 0.00 2.34 R
4055 4248 2.223641 CGCACAGCCAAAATGAGCATAT 60.224 45.455 0.00 0.00 34.41 1.78 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 4.450757 AGGTTTTGCAAATTTTATCCGCAC 59.549 37.500 13.65 3.78 31.10 5.34
76 77 2.039818 TTTATCCGCACGGGCATTTA 57.960 45.000 11.77 0.00 41.24 1.40
80 81 0.533308 TCCGCACGGGCATTTATACC 60.533 55.000 11.77 0.00 41.24 2.73
147 148 2.889606 TAACCGCTTGGCAGGAGCA 61.890 57.895 11.42 0.00 44.61 4.26
299 301 6.634805 TCAATCTCTGCTCGAAGAAATACTT 58.365 36.000 0.00 0.00 42.03 2.24
348 350 2.731217 AGTTTGAAGCAACGATGTTGC 58.269 42.857 23.22 23.22 45.22 4.17
365 367 2.543777 TGCCACTCTTTCACCTGTAC 57.456 50.000 0.00 0.00 0.00 2.90
371 373 3.489785 CACTCTTTCACCTGTACGAACAC 59.510 47.826 0.00 0.00 0.00 3.32
375 384 6.092955 TCTTTCACCTGTACGAACACTATT 57.907 37.500 0.00 0.00 0.00 1.73
400 409 2.811317 GAGCGCCTTGAGTCACGG 60.811 66.667 11.29 11.29 0.00 4.94
405 414 1.278238 CGCCTTGAGTCACGGAATAC 58.722 55.000 19.41 0.71 0.00 1.89
410 419 3.306780 CCTTGAGTCACGGAATACCAGTT 60.307 47.826 10.11 0.00 35.59 3.16
482 492 2.381911 CTGCCCATGCTCAGGTTTATT 58.618 47.619 4.95 0.00 38.71 1.40
483 493 2.100252 CTGCCCATGCTCAGGTTTATTG 59.900 50.000 4.95 0.00 38.71 1.90
484 494 2.102578 GCCCATGCTCAGGTTTATTGT 58.897 47.619 0.00 0.00 33.53 2.71
485 495 2.159198 GCCCATGCTCAGGTTTATTGTG 60.159 50.000 0.00 0.00 33.53 3.33
486 496 3.355378 CCCATGCTCAGGTTTATTGTGA 58.645 45.455 0.00 0.00 0.00 3.58
487 497 3.379372 CCCATGCTCAGGTTTATTGTGAG 59.621 47.826 0.00 0.00 40.66 3.51
488 498 3.379372 CCATGCTCAGGTTTATTGTGAGG 59.621 47.826 0.00 0.00 38.53 3.86
489 499 3.071874 TGCTCAGGTTTATTGTGAGGG 57.928 47.619 0.00 0.00 38.53 4.30
490 500 1.745653 GCTCAGGTTTATTGTGAGGGC 59.254 52.381 0.00 0.00 38.53 5.19
491 501 2.879756 GCTCAGGTTTATTGTGAGGGCA 60.880 50.000 0.00 0.00 38.53 5.36
492 502 3.624777 CTCAGGTTTATTGTGAGGGCAT 58.375 45.455 0.00 0.00 35.11 4.40
493 503 3.355378 TCAGGTTTATTGTGAGGGCATG 58.645 45.455 0.00 0.00 0.00 4.06
494 504 2.428171 CAGGTTTATTGTGAGGGCATGG 59.572 50.000 0.00 0.00 0.00 3.66
495 505 1.136891 GGTTTATTGTGAGGGCATGGC 59.863 52.381 11.56 11.56 0.00 4.40
507 517 2.802792 CATGGCCAATGCTCCACG 59.197 61.111 10.96 0.00 37.74 4.94
508 518 3.142838 ATGGCCAATGCTCCACGC 61.143 61.111 10.96 0.00 37.74 5.34
509 519 3.650298 ATGGCCAATGCTCCACGCT 62.650 57.895 10.96 0.00 40.11 5.07
510 520 3.818787 GGCCAATGCTCCACGCTG 61.819 66.667 0.00 0.00 40.11 5.18
511 521 3.818787 GCCAATGCTCCACGCTGG 61.819 66.667 0.00 0.00 40.11 4.85
512 522 2.046023 CCAATGCTCCACGCTGGA 60.046 61.111 6.57 6.57 45.98 3.86
513 523 2.401766 CCAATGCTCCACGCTGGAC 61.402 63.158 3.02 2.56 42.67 4.02
514 524 1.672030 CAATGCTCCACGCTGGACA 60.672 57.895 3.02 7.04 42.67 4.02
515 525 1.376424 AATGCTCCACGCTGGACAG 60.376 57.895 3.02 0.00 42.67 3.51
516 526 3.965539 ATGCTCCACGCTGGACAGC 62.966 63.158 14.08 14.08 42.67 4.40
548 558 3.251479 TCCACGTTGGAGAATCATCTG 57.749 47.619 3.02 0.00 42.67 2.90
549 559 1.667724 CCACGTTGGAGAATCATCTGC 59.332 52.381 0.00 0.00 40.96 4.26
550 560 1.667724 CACGTTGGAGAATCATCTGCC 59.332 52.381 0.00 0.00 42.91 4.85
551 561 0.933097 CGTTGGAGAATCATCTGCCG 59.067 55.000 0.00 0.00 42.91 5.69
552 562 1.740380 CGTTGGAGAATCATCTGCCGT 60.740 52.381 0.00 0.00 42.91 5.68
553 563 1.667724 GTTGGAGAATCATCTGCCGTG 59.332 52.381 0.00 0.00 42.91 4.94
554 564 0.178767 TGGAGAATCATCTGCCGTGG 59.821 55.000 0.00 0.00 42.91 4.94
555 565 0.465705 GGAGAATCATCTGCCGTGGA 59.534 55.000 0.00 0.00 38.02 4.02
556 566 1.539929 GGAGAATCATCTGCCGTGGAG 60.540 57.143 0.00 0.00 38.02 3.86
557 567 1.410517 GAGAATCATCTGCCGTGGAGA 59.589 52.381 0.00 0.00 35.54 3.71
558 568 1.833630 AGAATCATCTGCCGTGGAGAA 59.166 47.619 0.00 0.00 33.59 2.87
559 569 2.437281 AGAATCATCTGCCGTGGAGAAT 59.563 45.455 0.00 0.00 33.59 2.40
560 570 2.540265 ATCATCTGCCGTGGAGAATC 57.460 50.000 0.00 0.00 0.00 2.52
561 571 0.103026 TCATCTGCCGTGGAGAATCG 59.897 55.000 0.00 0.00 34.37 3.34
562 572 0.103026 CATCTGCCGTGGAGAATCGA 59.897 55.000 0.00 0.00 34.37 3.59
563 573 0.387202 ATCTGCCGTGGAGAATCGAG 59.613 55.000 0.00 0.00 34.37 4.04
564 574 0.965866 TCTGCCGTGGAGAATCGAGT 60.966 55.000 0.00 0.00 34.37 4.18
565 575 0.108615 CTGCCGTGGAGAATCGAGTT 60.109 55.000 0.00 0.00 34.37 3.01
566 576 1.134367 CTGCCGTGGAGAATCGAGTTA 59.866 52.381 0.00 0.00 34.37 2.24
567 577 1.546923 TGCCGTGGAGAATCGAGTTAA 59.453 47.619 0.00 0.00 34.37 2.01
568 578 2.028839 TGCCGTGGAGAATCGAGTTAAA 60.029 45.455 0.00 0.00 34.37 1.52
569 579 2.997986 GCCGTGGAGAATCGAGTTAAAA 59.002 45.455 0.00 0.00 34.37 1.52
570 580 3.434299 GCCGTGGAGAATCGAGTTAAAAA 59.566 43.478 0.00 0.00 34.37 1.94
571 581 4.435651 GCCGTGGAGAATCGAGTTAAAAAG 60.436 45.833 0.00 0.00 34.37 2.27
572 582 4.927425 CCGTGGAGAATCGAGTTAAAAAGA 59.073 41.667 0.00 0.00 34.37 2.52
573 583 5.163982 CCGTGGAGAATCGAGTTAAAAAGAC 60.164 44.000 0.00 0.00 34.37 3.01
574 584 5.634020 CGTGGAGAATCGAGTTAAAAAGACT 59.366 40.000 0.00 0.00 34.37 3.24
575 585 6.805271 CGTGGAGAATCGAGTTAAAAAGACTA 59.195 38.462 0.00 0.00 34.37 2.59
576 586 7.201333 CGTGGAGAATCGAGTTAAAAAGACTAC 60.201 40.741 0.00 0.00 34.37 2.73
577 587 7.813627 GTGGAGAATCGAGTTAAAAAGACTACT 59.186 37.037 0.00 0.00 34.37 2.57
578 588 7.813148 TGGAGAATCGAGTTAAAAAGACTACTG 59.187 37.037 0.00 0.00 34.37 2.74
579 589 7.201453 GGAGAATCGAGTTAAAAAGACTACTGC 60.201 40.741 0.00 0.00 34.37 4.40
580 590 6.590677 AGAATCGAGTTAAAAAGACTACTGCC 59.409 38.462 0.00 0.00 0.00 4.85
581 591 5.464030 TCGAGTTAAAAAGACTACTGCCT 57.536 39.130 0.00 0.00 0.00 4.75
582 592 5.227908 TCGAGTTAAAAAGACTACTGCCTG 58.772 41.667 0.00 0.00 0.00 4.85
583 593 4.143094 CGAGTTAAAAAGACTACTGCCTGC 60.143 45.833 0.00 0.00 0.00 4.85
584 594 4.714632 AGTTAAAAAGACTACTGCCTGCA 58.285 39.130 0.00 0.00 0.00 4.41
586 596 3.492102 AAAAAGACTACTGCCTGCAGA 57.508 42.857 24.88 8.35 46.30 4.26
587 597 2.464157 AAAGACTACTGCCTGCAGAC 57.536 50.000 24.88 3.38 46.30 3.51
588 598 0.610687 AAGACTACTGCCTGCAGACC 59.389 55.000 24.88 6.33 46.30 3.85
589 599 1.219393 GACTACTGCCTGCAGACCC 59.781 63.158 24.88 3.53 46.30 4.46
590 600 1.536418 ACTACTGCCTGCAGACCCA 60.536 57.895 24.88 8.36 46.30 4.51
591 601 1.127567 ACTACTGCCTGCAGACCCAA 61.128 55.000 24.88 4.81 46.30 4.12
592 602 0.036732 CTACTGCCTGCAGACCCAAA 59.963 55.000 24.88 3.24 46.30 3.28
593 603 0.250727 TACTGCCTGCAGACCCAAAC 60.251 55.000 24.88 0.00 46.30 2.93
594 604 2.594303 TGCCTGCAGACCCAAACG 60.594 61.111 17.39 0.00 0.00 3.60
595 605 2.281484 GCCTGCAGACCCAAACGA 60.281 61.111 17.39 0.00 0.00 3.85
596 606 2.617274 GCCTGCAGACCCAAACGAC 61.617 63.158 17.39 0.00 0.00 4.34
597 607 1.966451 CCTGCAGACCCAAACGACC 60.966 63.158 17.39 0.00 0.00 4.79
598 608 1.071471 CTGCAGACCCAAACGACCT 59.929 57.895 8.42 0.00 0.00 3.85
599 609 0.951040 CTGCAGACCCAAACGACCTC 60.951 60.000 8.42 0.00 0.00 3.85
600 610 1.371558 GCAGACCCAAACGACCTCT 59.628 57.895 0.00 0.00 0.00 3.69
601 611 0.250338 GCAGACCCAAACGACCTCTT 60.250 55.000 0.00 0.00 0.00 2.85
602 612 1.512926 CAGACCCAAACGACCTCTTG 58.487 55.000 0.00 0.00 0.00 3.02
603 613 0.250338 AGACCCAAACGACCTCTTGC 60.250 55.000 0.00 0.00 0.00 4.01
604 614 0.534203 GACCCAAACGACCTCTTGCA 60.534 55.000 0.00 0.00 0.00 4.08
605 615 0.535102 ACCCAAACGACCTCTTGCAG 60.535 55.000 0.00 0.00 0.00 4.41
606 616 0.250295 CCCAAACGACCTCTTGCAGA 60.250 55.000 0.00 0.00 0.00 4.26
607 617 1.151668 CCAAACGACCTCTTGCAGAG 58.848 55.000 0.00 6.28 41.96 3.35
616 626 0.463620 CTCTTGCAGAGGAGGTAGGC 59.536 60.000 5.54 0.00 38.67 3.93
617 627 1.142748 CTTGCAGAGGAGGTAGGCG 59.857 63.158 0.00 0.00 0.00 5.52
618 628 2.914777 CTTGCAGAGGAGGTAGGCGC 62.915 65.000 0.00 0.00 0.00 6.53
619 629 3.461773 GCAGAGGAGGTAGGCGCA 61.462 66.667 10.83 0.00 0.00 6.09
620 630 2.811101 CAGAGGAGGTAGGCGCAG 59.189 66.667 10.83 0.00 0.00 5.18
634 644 3.761481 CGCAGCAAAGAAAGTGAGG 57.239 52.632 0.00 0.00 0.00 3.86
635 645 1.229428 CGCAGCAAAGAAAGTGAGGA 58.771 50.000 0.00 0.00 0.00 3.71
636 646 1.196354 CGCAGCAAAGAAAGTGAGGAG 59.804 52.381 0.00 0.00 0.00 3.69
637 647 2.498167 GCAGCAAAGAAAGTGAGGAGA 58.502 47.619 0.00 0.00 0.00 3.71
638 648 2.483491 GCAGCAAAGAAAGTGAGGAGAG 59.517 50.000 0.00 0.00 0.00 3.20
639 649 3.805108 GCAGCAAAGAAAGTGAGGAGAGA 60.805 47.826 0.00 0.00 0.00 3.10
640 650 3.995705 CAGCAAAGAAAGTGAGGAGAGAG 59.004 47.826 0.00 0.00 0.00 3.20
641 651 3.900601 AGCAAAGAAAGTGAGGAGAGAGA 59.099 43.478 0.00 0.00 0.00 3.10
642 652 4.021192 AGCAAAGAAAGTGAGGAGAGAGAG 60.021 45.833 0.00 0.00 0.00 3.20
643 653 4.021544 GCAAAGAAAGTGAGGAGAGAGAGA 60.022 45.833 0.00 0.00 0.00 3.10
644 654 5.713025 CAAAGAAAGTGAGGAGAGAGAGAG 58.287 45.833 0.00 0.00 0.00 3.20
645 655 3.968265 AGAAAGTGAGGAGAGAGAGAGG 58.032 50.000 0.00 0.00 0.00 3.69
646 656 3.591527 AGAAAGTGAGGAGAGAGAGAGGA 59.408 47.826 0.00 0.00 0.00 3.71
647 657 4.230502 AGAAAGTGAGGAGAGAGAGAGGAT 59.769 45.833 0.00 0.00 0.00 3.24
648 658 3.582998 AGTGAGGAGAGAGAGAGGATG 57.417 52.381 0.00 0.00 0.00 3.51
649 659 3.122480 AGTGAGGAGAGAGAGAGGATGA 58.878 50.000 0.00 0.00 0.00 2.92
650 660 3.137176 AGTGAGGAGAGAGAGAGGATGAG 59.863 52.174 0.00 0.00 0.00 2.90
651 661 2.158623 TGAGGAGAGAGAGAGGATGAGC 60.159 54.545 0.00 0.00 0.00 4.26
652 662 1.145738 AGGAGAGAGAGAGGATGAGCC 59.854 57.143 0.00 0.00 0.00 4.70
653 663 1.133513 GGAGAGAGAGAGGATGAGCCA 60.134 57.143 0.00 0.00 40.02 4.75
654 664 2.233271 GAGAGAGAGAGGATGAGCCAG 58.767 57.143 0.00 0.00 40.02 4.85
655 665 1.852309 AGAGAGAGAGGATGAGCCAGA 59.148 52.381 0.00 0.00 40.02 3.86
656 666 2.158564 AGAGAGAGAGGATGAGCCAGAG 60.159 54.545 0.00 0.00 40.02 3.35
657 667 1.852309 AGAGAGAGGATGAGCCAGAGA 59.148 52.381 0.00 0.00 40.02 3.10
658 668 2.158564 AGAGAGAGGATGAGCCAGAGAG 60.159 54.545 0.00 0.00 40.02 3.20
659 669 1.133388 AGAGAGGATGAGCCAGAGAGG 60.133 57.143 0.00 0.00 40.02 3.69
660 670 0.105555 AGAGGATGAGCCAGAGAGGG 60.106 60.000 0.00 0.00 40.02 4.30
667 677 3.397906 GCCAGAGAGGGTTGAGCT 58.602 61.111 0.00 0.00 38.09 4.09
668 678 1.220477 GCCAGAGAGGGTTGAGCTC 59.780 63.158 6.82 6.82 38.09 4.09
669 679 1.548357 GCCAGAGAGGGTTGAGCTCA 61.548 60.000 13.74 13.74 38.09 4.26
670 680 1.202330 CCAGAGAGGGTTGAGCTCAT 58.798 55.000 19.04 1.31 0.00 2.90
671 681 1.558756 CCAGAGAGGGTTGAGCTCATT 59.441 52.381 19.04 3.66 0.00 2.57
672 682 2.026449 CCAGAGAGGGTTGAGCTCATTT 60.026 50.000 19.04 3.27 0.00 2.32
673 683 3.008330 CAGAGAGGGTTGAGCTCATTTG 58.992 50.000 19.04 2.95 0.00 2.32
674 684 2.909006 AGAGAGGGTTGAGCTCATTTGA 59.091 45.455 19.04 0.00 0.00 2.69
675 685 3.055240 AGAGAGGGTTGAGCTCATTTGAG 60.055 47.826 19.04 3.13 44.75 3.02
676 686 2.026449 AGAGGGTTGAGCTCATTTGAGG 60.026 50.000 19.04 0.00 42.29 3.86
677 687 1.005215 AGGGTTGAGCTCATTTGAGGG 59.995 52.381 19.04 0.00 42.29 4.30
678 688 1.004745 GGGTTGAGCTCATTTGAGGGA 59.995 52.381 19.04 0.00 42.29 4.20
679 689 2.555227 GGGTTGAGCTCATTTGAGGGAA 60.555 50.000 19.04 0.00 42.29 3.97
680 690 3.157087 GGTTGAGCTCATTTGAGGGAAA 58.843 45.455 19.04 0.00 42.29 3.13
681 691 3.192212 GGTTGAGCTCATTTGAGGGAAAG 59.808 47.826 19.04 0.00 42.29 2.62
682 692 4.074970 GTTGAGCTCATTTGAGGGAAAGA 58.925 43.478 19.04 0.00 42.29 2.52
683 693 4.371624 TGAGCTCATTTGAGGGAAAGAA 57.628 40.909 13.74 0.00 42.29 2.52
684 694 4.728772 TGAGCTCATTTGAGGGAAAGAAA 58.271 39.130 13.74 0.00 42.29 2.52
685 695 5.139727 TGAGCTCATTTGAGGGAAAGAAAA 58.860 37.500 13.74 0.00 42.29 2.29
686 696 5.242393 TGAGCTCATTTGAGGGAAAGAAAAG 59.758 40.000 13.74 0.00 42.29 2.27
687 697 5.388654 AGCTCATTTGAGGGAAAGAAAAGA 58.611 37.500 9.49 0.00 42.29 2.52
688 698 5.835280 AGCTCATTTGAGGGAAAGAAAAGAA 59.165 36.000 9.49 0.00 42.29 2.52
689 699 5.923114 GCTCATTTGAGGGAAAGAAAAGAAC 59.077 40.000 9.49 0.00 42.29 3.01
690 700 6.461509 GCTCATTTGAGGGAAAGAAAAGAACA 60.462 38.462 9.49 0.00 42.29 3.18
691 701 7.042797 TCATTTGAGGGAAAGAAAAGAACAG 57.957 36.000 0.00 0.00 0.00 3.16
692 702 5.852282 TTTGAGGGAAAGAAAAGAACAGG 57.148 39.130 0.00 0.00 0.00 4.00
693 703 4.788925 TGAGGGAAAGAAAAGAACAGGA 57.211 40.909 0.00 0.00 0.00 3.86
694 704 5.124036 TGAGGGAAAGAAAAGAACAGGAA 57.876 39.130 0.00 0.00 0.00 3.36
695 705 5.515106 TGAGGGAAAGAAAAGAACAGGAAA 58.485 37.500 0.00 0.00 0.00 3.13
696 706 5.955355 TGAGGGAAAGAAAAGAACAGGAAAA 59.045 36.000 0.00 0.00 0.00 2.29
697 707 6.096846 TGAGGGAAAGAAAAGAACAGGAAAAG 59.903 38.462 0.00 0.00 0.00 2.27
698 708 5.050490 GGGAAAGAAAAGAACAGGAAAAGC 58.950 41.667 0.00 0.00 0.00 3.51
699 709 5.163405 GGGAAAGAAAAGAACAGGAAAAGCT 60.163 40.000 0.00 0.00 0.00 3.74
700 710 5.750547 GGAAAGAAAAGAACAGGAAAAGCTG 59.249 40.000 0.00 0.00 0.00 4.24
701 711 4.926140 AGAAAAGAACAGGAAAAGCTGG 57.074 40.909 0.00 0.00 0.00 4.85
702 712 4.281657 AGAAAAGAACAGGAAAAGCTGGT 58.718 39.130 0.00 0.00 0.00 4.00
703 713 4.098501 AGAAAAGAACAGGAAAAGCTGGTG 59.901 41.667 0.00 0.00 0.00 4.17
704 714 3.297134 AAGAACAGGAAAAGCTGGTGA 57.703 42.857 0.00 0.00 0.00 4.02
705 715 2.856222 AGAACAGGAAAAGCTGGTGAG 58.144 47.619 0.00 0.00 0.00 3.51
706 716 2.173569 AGAACAGGAAAAGCTGGTGAGT 59.826 45.455 0.00 0.00 0.00 3.41
707 717 1.972872 ACAGGAAAAGCTGGTGAGTG 58.027 50.000 0.00 0.00 0.00 3.51
708 718 1.242076 CAGGAAAAGCTGGTGAGTGG 58.758 55.000 0.00 0.00 0.00 4.00
709 719 0.538287 AGGAAAAGCTGGTGAGTGGC 60.538 55.000 0.00 0.00 0.00 5.01
710 720 1.527433 GGAAAAGCTGGTGAGTGGCC 61.527 60.000 0.00 0.00 0.00 5.36
711 721 1.527433 GAAAAGCTGGTGAGTGGCCC 61.527 60.000 0.00 0.00 0.00 5.80
712 722 3.513750 AAAGCTGGTGAGTGGCCCC 62.514 63.158 0.00 0.00 0.00 5.80
714 724 4.729918 GCTGGTGAGTGGCCCCAG 62.730 72.222 18.02 18.02 46.91 4.45
715 725 4.039092 CTGGTGAGTGGCCCCAGG 62.039 72.222 15.31 0.00 41.69 4.45
733 743 4.748679 GCGCTGCTGCTTCCGTTG 62.749 66.667 14.03 0.00 36.97 4.10
734 744 4.093952 CGCTGCTGCTTCCGTTGG 62.094 66.667 14.03 0.00 36.97 3.77
735 745 2.980233 GCTGCTGCTTCCGTTGGT 60.980 61.111 8.53 0.00 36.03 3.67
736 746 2.555547 GCTGCTGCTTCCGTTGGTT 61.556 57.895 8.53 0.00 36.03 3.67
737 747 1.576421 CTGCTGCTTCCGTTGGTTC 59.424 57.895 0.00 0.00 0.00 3.62
738 748 1.856265 CTGCTGCTTCCGTTGGTTCC 61.856 60.000 0.00 0.00 0.00 3.62
739 749 1.896660 GCTGCTTCCGTTGGTTCCA 60.897 57.895 0.00 0.00 0.00 3.53
740 750 1.244019 GCTGCTTCCGTTGGTTCCAT 61.244 55.000 0.00 0.00 0.00 3.41
741 751 0.523072 CTGCTTCCGTTGGTTCCATG 59.477 55.000 0.00 0.00 0.00 3.66
742 752 1.212751 GCTTCCGTTGGTTCCATGC 59.787 57.895 0.00 0.00 0.00 4.06
743 753 1.244019 GCTTCCGTTGGTTCCATGCT 61.244 55.000 0.00 0.00 0.00 3.79
744 754 0.804989 CTTCCGTTGGTTCCATGCTC 59.195 55.000 0.00 0.00 0.00 4.26
745 755 0.608035 TTCCGTTGGTTCCATGCTCC 60.608 55.000 0.00 0.00 0.00 4.70
746 756 2.046285 CCGTTGGTTCCATGCTCCC 61.046 63.158 0.00 0.00 0.00 4.30
747 757 1.303236 CGTTGGTTCCATGCTCCCA 60.303 57.895 0.00 0.00 0.00 4.37
748 758 0.680921 CGTTGGTTCCATGCTCCCAT 60.681 55.000 0.00 0.00 0.00 4.00
749 759 1.408127 CGTTGGTTCCATGCTCCCATA 60.408 52.381 0.00 0.00 0.00 2.74
750 760 2.301346 GTTGGTTCCATGCTCCCATAG 58.699 52.381 0.00 0.00 0.00 2.23
751 761 1.891933 TGGTTCCATGCTCCCATAGA 58.108 50.000 0.00 0.00 0.00 1.98
752 762 2.421725 TGGTTCCATGCTCCCATAGAT 58.578 47.619 0.00 0.00 0.00 1.98
753 763 3.597182 TGGTTCCATGCTCCCATAGATA 58.403 45.455 0.00 0.00 0.00 1.98
754 764 3.584406 TGGTTCCATGCTCCCATAGATAG 59.416 47.826 0.00 0.00 0.00 2.08
755 765 3.604582 GTTCCATGCTCCCATAGATAGC 58.395 50.000 0.00 0.00 36.77 2.97
756 766 3.196415 TCCATGCTCCCATAGATAGCT 57.804 47.619 0.00 0.00 37.16 3.32
757 767 2.836372 TCCATGCTCCCATAGATAGCTG 59.164 50.000 0.00 0.00 37.16 4.24
758 768 2.630158 CATGCTCCCATAGATAGCTGC 58.370 52.381 0.00 0.00 37.16 5.25
759 769 2.021262 TGCTCCCATAGATAGCTGCT 57.979 50.000 7.57 7.57 37.16 4.24
760 770 1.898472 TGCTCCCATAGATAGCTGCTC 59.102 52.381 4.91 0.00 37.16 4.26
761 771 1.206849 GCTCCCATAGATAGCTGCTCC 59.793 57.143 4.91 0.00 33.40 4.70
762 772 2.533916 CTCCCATAGATAGCTGCTCCA 58.466 52.381 4.91 0.00 0.00 3.86
763 773 3.106054 CTCCCATAGATAGCTGCTCCAT 58.894 50.000 4.91 0.00 0.00 3.41
764 774 4.285020 CTCCCATAGATAGCTGCTCCATA 58.715 47.826 4.91 0.00 0.00 2.74
765 775 4.026744 TCCCATAGATAGCTGCTCCATAC 58.973 47.826 4.91 0.00 0.00 2.39
766 776 3.181482 CCCATAGATAGCTGCTCCATACG 60.181 52.174 4.91 0.00 0.00 3.06
767 777 3.696548 CCATAGATAGCTGCTCCATACGA 59.303 47.826 4.91 0.00 0.00 3.43
768 778 4.439426 CCATAGATAGCTGCTCCATACGAC 60.439 50.000 4.91 0.00 0.00 4.34
769 779 2.870175 AGATAGCTGCTCCATACGACT 58.130 47.619 4.91 0.00 0.00 4.18
770 780 3.226777 AGATAGCTGCTCCATACGACTT 58.773 45.455 4.91 0.00 0.00 3.01
771 781 3.639094 AGATAGCTGCTCCATACGACTTT 59.361 43.478 4.91 0.00 0.00 2.66
772 782 4.827835 AGATAGCTGCTCCATACGACTTTA 59.172 41.667 4.91 0.00 0.00 1.85
773 783 5.478679 AGATAGCTGCTCCATACGACTTTAT 59.521 40.000 4.91 0.00 0.00 1.40
774 784 6.659668 AGATAGCTGCTCCATACGACTTTATA 59.340 38.462 4.91 0.00 0.00 0.98
775 785 4.872664 AGCTGCTCCATACGACTTTATAC 58.127 43.478 0.00 0.00 0.00 1.47
776 786 3.669122 GCTGCTCCATACGACTTTATACG 59.331 47.826 0.00 0.00 0.00 3.06
777 787 3.635331 TGCTCCATACGACTTTATACGC 58.365 45.455 0.00 0.00 0.00 4.42
778 788 3.067040 TGCTCCATACGACTTTATACGCA 59.933 43.478 0.00 0.00 0.00 5.24
779 789 4.235360 GCTCCATACGACTTTATACGCAT 58.765 43.478 0.00 0.00 0.00 4.73
780 790 4.090066 GCTCCATACGACTTTATACGCATG 59.910 45.833 0.00 0.00 34.39 4.06
781 791 3.985279 TCCATACGACTTTATACGCATGC 59.015 43.478 7.91 7.91 33.62 4.06
782 792 3.738791 CCATACGACTTTATACGCATGCA 59.261 43.478 19.57 0.00 33.62 3.96
783 793 4.388773 CCATACGACTTTATACGCATGCAT 59.611 41.667 19.57 4.54 33.62 3.96
784 794 5.575218 CCATACGACTTTATACGCATGCATA 59.425 40.000 19.57 7.36 33.62 3.14
785 795 4.966850 ACGACTTTATACGCATGCATAC 57.033 40.909 19.57 0.00 0.00 2.39
786 796 4.364860 ACGACTTTATACGCATGCATACA 58.635 39.130 19.57 0.00 0.00 2.29
787 797 4.988540 ACGACTTTATACGCATGCATACAT 59.011 37.500 19.57 7.00 36.79 2.29
797 807 2.462456 ATGCATACATGAGGCTACCG 57.538 50.000 0.00 0.00 35.30 4.02
798 808 1.119684 TGCATACATGAGGCTACCGT 58.880 50.000 0.00 0.00 35.30 4.83
799 809 1.484653 TGCATACATGAGGCTACCGTT 59.515 47.619 0.00 0.00 35.30 4.44
800 810 2.093181 TGCATACATGAGGCTACCGTTT 60.093 45.455 0.00 0.00 35.30 3.60
801 811 2.287915 GCATACATGAGGCTACCGTTTG 59.712 50.000 0.00 0.00 0.00 2.93
802 812 2.684001 TACATGAGGCTACCGTTTGG 57.316 50.000 0.00 0.00 42.84 3.28
819 829 1.810959 TGGTATTGCCACCGTTGTAC 58.189 50.000 0.00 0.00 43.61 2.90
820 830 1.071857 TGGTATTGCCACCGTTGTACA 59.928 47.619 0.00 0.00 43.61 2.90
821 831 2.290387 TGGTATTGCCACCGTTGTACAT 60.290 45.455 0.00 0.00 43.61 2.29
822 832 2.096819 GGTATTGCCACCGTTGTACATG 59.903 50.000 0.00 0.00 37.17 3.21
823 833 0.525761 ATTGCCACCGTTGTACATGC 59.474 50.000 0.00 0.00 0.00 4.06
824 834 1.519751 TTGCCACCGTTGTACATGCC 61.520 55.000 0.00 0.00 0.00 4.40
825 835 2.696759 GCCACCGTTGTACATGCCC 61.697 63.158 0.00 0.00 0.00 5.36
837 847 3.265737 TGTACATGCCCTGAACCAGTAAT 59.734 43.478 0.00 0.00 0.00 1.89
976 988 2.683867 ACCGTCTCTTTCTCTACATCGG 59.316 50.000 0.00 0.00 40.94 4.18
1026 1038 3.058160 ACTGCCAACGCATCCTGC 61.058 61.111 0.00 0.00 46.11 4.85
1167 1179 1.610673 TCTCCTGTGCACCTCCTCC 60.611 63.158 15.69 0.00 0.00 4.30
1251 1263 0.537653 TGATGCGGAACCCATACGAA 59.462 50.000 0.00 0.00 0.00 3.85
1302 1314 2.363038 CTGGCCATATGAATTGTGGGTG 59.637 50.000 5.51 0.00 33.58 4.61
1355 1367 6.844388 TCAGTTAGAGCTGGGATAATCCTTTA 59.156 38.462 0.00 0.00 36.57 1.85
1359 1371 6.133253 AGAGCTGGGATAATCCTTTATTCC 57.867 41.667 0.00 0.00 42.05 3.01
1405 1417 4.687483 GGCTCCATTTGTGAGAAAATGTTG 59.313 41.667 8.40 3.17 43.17 3.33
1414 1426 7.522901 TTGTGAGAAAATGTTGAATTGTGTG 57.477 32.000 0.00 0.00 0.00 3.82
1436 1448 3.815962 GTCTCATAGGACTATCGAGCACA 59.184 47.826 0.00 0.00 33.81 4.57
1461 1473 2.410469 GCATTGGTGGCTCGATGC 59.590 61.111 14.48 14.48 44.32 3.91
1479 1493 3.564053 TGCCTATTGTGATGCATCTCA 57.436 42.857 26.32 25.02 0.00 3.27
1488 1502 6.572167 TTGTGATGCATCTCAATGTTTGTA 57.428 33.333 30.56 13.65 35.94 2.41
1557 1571 8.155821 TGTTGAATTGTTACGGAATCTTGTTA 57.844 30.769 0.00 0.00 0.00 2.41
1603 1617 4.968259 TCTAGTGTGCCTACATTTGTGTT 58.032 39.130 0.00 0.00 39.39 3.32
1615 1629 6.430000 CCTACATTTGTGTTAGGTTGTTAGCT 59.570 38.462 0.00 0.00 35.90 3.32
1616 1630 6.313744 ACATTTGTGTTAGGTTGTTAGCTC 57.686 37.500 0.00 0.00 33.36 4.09
1638 1652 7.772292 AGCTCAGCTGATTTTAGATTGTGATTA 59.228 33.333 18.63 0.00 37.57 1.75
1672 1686 2.170187 AGGCTTTGTTTTCATGGTTGCA 59.830 40.909 0.00 0.00 0.00 4.08
1684 1698 7.598189 TTTCATGGTTGCATGATTTATGTTG 57.402 32.000 0.00 0.00 40.76 3.33
1709 1724 4.708726 AAGTGCTAACATGAATTGGCTC 57.291 40.909 0.00 0.00 37.01 4.70
1900 1916 5.576384 GTCATGGCAAAGCGATTGATAAAAA 59.424 36.000 9.15 0.00 41.85 1.94
1904 1920 5.576384 TGGCAAAGCGATTGATAAAAATGAC 59.424 36.000 9.15 0.00 41.85 3.06
1920 1936 4.806640 AATGACGGGATGAAAAATTGCT 57.193 36.364 0.00 0.00 0.00 3.91
1981 1997 7.442364 TCTCCTTACATAGCATTTGTTATCTGC 59.558 37.037 0.00 0.00 36.15 4.26
2046 2062 9.462606 CTTTTCTTCTTGGTATATTTGGTAGGT 57.537 33.333 0.00 0.00 0.00 3.08
2100 2116 7.500227 TGAATTTAGGATCTGCTTGGTCTAATG 59.500 37.037 0.00 0.00 0.00 1.90
2118 2134 3.806949 ATGGAAAGAGTGGCCAAACTA 57.193 42.857 7.24 0.00 34.95 2.24
2205 2221 3.244078 TGTGTTGTACCCTCACAGATCAC 60.244 47.826 9.65 0.00 37.20 3.06
2389 2405 8.186821 CCCTCTCTTGCTTTGTTATCATTTTAG 58.813 37.037 0.00 0.00 0.00 1.85
2443 2459 6.710278 AGAGAGAAAGAGAATTTCCCTCTTG 58.290 40.000 8.15 0.00 46.80 3.02
2460 2476 5.392380 CCCTCTTGTGCACTGATGAATTAAC 60.392 44.000 19.41 0.00 0.00 2.01
3130 3317 4.026356 AGAATGGGCTATATCACAAGGC 57.974 45.455 0.00 0.00 37.55 4.35
3315 3502 9.625747 TGCTTTACATATAAACCATGATGAAGA 57.374 29.630 0.00 0.00 0.00 2.87
3347 3534 5.301835 ACTATCCATCTGTTTGCAGCTAT 57.698 39.130 0.00 0.00 42.29 2.97
3361 3548 5.400066 TGCAGCTATATACGGCTTATGAA 57.600 39.130 0.00 0.00 36.59 2.57
3374 3561 3.312697 GGCTTATGAAAAGCTAACCTCCG 59.687 47.826 9.39 0.00 42.62 4.63
3549 3736 0.547471 TCCCTCCACAAGGCATGAGA 60.547 55.000 0.00 0.00 44.71 3.27
3550 3737 0.329261 CCCTCCACAAGGCATGAGAA 59.671 55.000 0.00 0.00 44.71 2.87
3551 3738 1.272092 CCCTCCACAAGGCATGAGAAA 60.272 52.381 0.00 0.00 44.71 2.52
3552 3739 2.089980 CCTCCACAAGGCATGAGAAAG 58.910 52.381 0.00 0.00 38.67 2.62
3553 3740 2.290514 CCTCCACAAGGCATGAGAAAGA 60.291 50.000 0.00 0.00 38.67 2.52
3600 3793 7.858879 GGTGACGTGTTTTTATTGTCAGTTATT 59.141 33.333 0.00 0.00 39.96 1.40
3801 3994 9.751542 CTTGTTGTTGGTTGGTATTGTAATAAA 57.248 29.630 0.00 0.00 0.00 1.40
3890 4083 4.256920 CATCTTTTCGGTCAGAGGTCATT 58.743 43.478 0.00 0.00 0.00 2.57
3933 4126 9.983804 CAATGCATCAATATAGATGTCATGTAC 57.016 33.333 0.00 0.00 45.58 2.90
4046 4239 3.618594 GCATATATCATGTCGTCGCCAAT 59.381 43.478 0.00 0.00 0.00 3.16
4055 4248 0.952984 TCGTCGCCAATTGTCATGCA 60.953 50.000 4.43 0.00 0.00 3.96
4076 4269 0.108992 ATGCTCATTTTGGCTGTGCG 60.109 50.000 0.00 0.00 36.24 5.34
4086 4279 2.257691 TGGCTGTGCGGTAAAGTTTA 57.742 45.000 0.00 0.00 0.00 2.01
4174 4369 3.743521 TGCTGATAGTGTTCTTTGCTGT 58.256 40.909 0.00 0.00 0.00 4.40
4178 4373 3.814842 TGATAGTGTTCTTTGCTGTGGTG 59.185 43.478 0.00 0.00 0.00 4.17
4181 4376 2.423538 AGTGTTCTTTGCTGTGGTGAAC 59.576 45.455 0.00 0.00 37.92 3.18
4228 4443 3.804325 TCTTCTCGTTGAAAGCTGAACAG 59.196 43.478 0.00 0.00 33.79 3.16
4235 4450 6.198687 TCGTTGAAAGCTGAACAGTTAAATG 58.801 36.000 0.45 0.45 0.00 2.32
4371 4588 1.202687 GCACAGGTGATGCAGCCTATA 60.203 52.381 0.00 0.00 42.88 1.31
4373 4590 3.306989 GCACAGGTGATGCAGCCTATATA 60.307 47.826 0.00 0.00 42.88 0.86
4374 4591 4.248859 CACAGGTGATGCAGCCTATATAC 58.751 47.826 0.00 0.00 33.07 1.47
4379 4596 6.488006 CAGGTGATGCAGCCTATATACTTTTT 59.512 38.462 0.00 0.00 33.07 1.94
4517 4736 5.407387 GTCAATGCTGCATGAAAAACAAGAT 59.593 36.000 17.00 0.00 0.00 2.40
4518 4737 6.587226 GTCAATGCTGCATGAAAAACAAGATA 59.413 34.615 17.00 0.00 0.00 1.98
4519 4738 6.809689 TCAATGCTGCATGAAAAACAAGATAG 59.190 34.615 17.00 0.00 0.00 2.08
4529 4748 9.552114 CATGAAAAACAAGATAGAACATCAGAC 57.448 33.333 0.00 0.00 0.00 3.51
4539 4758 4.900635 AGAACATCAGACAAACACAACC 57.099 40.909 0.00 0.00 0.00 3.77
4540 4759 4.269183 AGAACATCAGACAAACACAACCA 58.731 39.130 0.00 0.00 0.00 3.67
4541 4760 4.704540 AGAACATCAGACAAACACAACCAA 59.295 37.500 0.00 0.00 0.00 3.67
4542 4761 5.360714 AGAACATCAGACAAACACAACCAAT 59.639 36.000 0.00 0.00 0.00 3.16
4543 4762 5.596836 ACATCAGACAAACACAACCAATT 57.403 34.783 0.00 0.00 0.00 2.32
4544 4763 6.707440 ACATCAGACAAACACAACCAATTA 57.293 33.333 0.00 0.00 0.00 1.40
4545 4764 6.738114 ACATCAGACAAACACAACCAATTAG 58.262 36.000 0.00 0.00 0.00 1.73
4546 4765 6.321181 ACATCAGACAAACACAACCAATTAGT 59.679 34.615 0.00 0.00 0.00 2.24
4547 4766 7.500892 ACATCAGACAAACACAACCAATTAGTA 59.499 33.333 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 3.883830 TGCAAAACCTGTTTCATGTGT 57.116 38.095 0.00 0.00 31.45 3.72
40 41 6.512578 GCGGATAAAATTTGCAAAACCTGTTT 60.513 34.615 17.19 8.85 0.00 2.83
42 43 4.450757 GCGGATAAAATTTGCAAAACCTGT 59.549 37.500 17.19 2.69 0.00 4.00
112 113 8.999431 CAAGCGGTTACCTATAATTGTTATGAT 58.001 33.333 0.00 0.00 0.00 2.45
240 242 9.730705 AGAAGATGTTTACAAGAGATTTCATCA 57.269 29.630 0.00 0.00 34.71 3.07
320 322 7.075741 ACATCGTTGCTTCAAACTAATTACAC 58.924 34.615 0.00 0.00 0.00 2.90
330 332 1.406898 TGGCAACATCGTTGCTTCAAA 59.593 42.857 25.85 8.90 46.17 2.69
331 333 1.028130 TGGCAACATCGTTGCTTCAA 58.972 45.000 25.85 10.91 46.17 2.69
348 350 3.057734 GTTCGTACAGGTGAAAGAGTGG 58.942 50.000 0.00 0.00 0.00 4.00
381 390 1.803519 CGTGACTCAAGGCGCTCTC 60.804 63.158 7.64 0.00 0.00 3.20
383 392 2.765250 TTCCGTGACTCAAGGCGCTC 62.765 60.000 7.64 0.00 33.18 5.03
410 419 0.255890 GGGTCTGAATTAGCAGCCCA 59.744 55.000 15.65 0.00 44.57 5.36
490 500 2.802792 CGTGGAGCATTGGCCATG 59.197 61.111 6.09 8.63 42.56 3.66
523 533 2.798148 ATTCTCCAACGTGGACGGGC 62.798 60.000 3.93 0.00 42.67 6.13
524 534 0.739813 GATTCTCCAACGTGGACGGG 60.740 60.000 3.93 0.00 42.67 5.28
525 535 0.037697 TGATTCTCCAACGTGGACGG 60.038 55.000 3.93 0.00 42.67 4.79
526 536 1.927174 GATGATTCTCCAACGTGGACG 59.073 52.381 0.00 0.00 42.67 4.79
527 537 2.932614 CAGATGATTCTCCAACGTGGAC 59.067 50.000 0.00 0.00 42.67 4.02
528 538 2.677902 GCAGATGATTCTCCAACGTGGA 60.678 50.000 0.00 0.00 45.98 4.02
529 539 1.667724 GCAGATGATTCTCCAACGTGG 59.332 52.381 0.00 0.00 39.43 4.94
530 540 1.667724 GGCAGATGATTCTCCAACGTG 59.332 52.381 0.00 0.00 0.00 4.49
531 541 1.740380 CGGCAGATGATTCTCCAACGT 60.740 52.381 0.00 0.00 0.00 3.99
532 542 0.933097 CGGCAGATGATTCTCCAACG 59.067 55.000 0.00 0.00 0.00 4.10
533 543 1.667724 CACGGCAGATGATTCTCCAAC 59.332 52.381 0.00 0.00 0.00 3.77
534 544 1.407299 CCACGGCAGATGATTCTCCAA 60.407 52.381 0.00 0.00 0.00 3.53
535 545 0.178767 CCACGGCAGATGATTCTCCA 59.821 55.000 0.00 0.00 0.00 3.86
536 546 0.465705 TCCACGGCAGATGATTCTCC 59.534 55.000 0.00 0.00 0.00 3.71
537 547 1.410517 TCTCCACGGCAGATGATTCTC 59.589 52.381 0.00 0.00 0.00 2.87
538 548 1.489481 TCTCCACGGCAGATGATTCT 58.511 50.000 0.00 0.00 0.00 2.40
539 549 2.315925 TTCTCCACGGCAGATGATTC 57.684 50.000 0.00 0.00 0.00 2.52
540 550 2.804572 CGATTCTCCACGGCAGATGATT 60.805 50.000 0.00 0.00 0.00 2.57
541 551 1.269988 CGATTCTCCACGGCAGATGAT 60.270 52.381 0.00 0.00 0.00 2.45
542 552 0.103026 CGATTCTCCACGGCAGATGA 59.897 55.000 0.00 0.00 0.00 2.92
543 553 0.103026 TCGATTCTCCACGGCAGATG 59.897 55.000 0.00 0.00 0.00 2.90
544 554 0.387202 CTCGATTCTCCACGGCAGAT 59.613 55.000 0.00 0.00 0.00 2.90
545 555 0.965866 ACTCGATTCTCCACGGCAGA 60.966 55.000 0.00 0.00 0.00 4.26
546 556 0.108615 AACTCGATTCTCCACGGCAG 60.109 55.000 0.00 0.00 0.00 4.85
547 557 1.179152 TAACTCGATTCTCCACGGCA 58.821 50.000 0.00 0.00 0.00 5.69
548 558 2.288961 TTAACTCGATTCTCCACGGC 57.711 50.000 0.00 0.00 0.00 5.68
549 559 4.927425 TCTTTTTAACTCGATTCTCCACGG 59.073 41.667 0.00 0.00 0.00 4.94
550 560 5.634020 AGTCTTTTTAACTCGATTCTCCACG 59.366 40.000 0.00 0.00 0.00 4.94
551 561 7.813627 AGTAGTCTTTTTAACTCGATTCTCCAC 59.186 37.037 0.00 0.00 0.00 4.02
552 562 7.813148 CAGTAGTCTTTTTAACTCGATTCTCCA 59.187 37.037 0.00 0.00 0.00 3.86
553 563 7.201453 GCAGTAGTCTTTTTAACTCGATTCTCC 60.201 40.741 0.00 0.00 0.00 3.71
554 564 7.201453 GGCAGTAGTCTTTTTAACTCGATTCTC 60.201 40.741 0.00 0.00 0.00 2.87
555 565 6.590677 GGCAGTAGTCTTTTTAACTCGATTCT 59.409 38.462 0.00 0.00 0.00 2.40
556 566 6.590677 AGGCAGTAGTCTTTTTAACTCGATTC 59.409 38.462 0.00 0.00 0.00 2.52
557 567 6.369065 CAGGCAGTAGTCTTTTTAACTCGATT 59.631 38.462 0.00 0.00 0.00 3.34
558 568 5.869888 CAGGCAGTAGTCTTTTTAACTCGAT 59.130 40.000 0.00 0.00 0.00 3.59
559 569 5.227908 CAGGCAGTAGTCTTTTTAACTCGA 58.772 41.667 0.00 0.00 0.00 4.04
560 570 4.143094 GCAGGCAGTAGTCTTTTTAACTCG 60.143 45.833 0.00 0.00 0.00 4.18
561 571 4.755123 TGCAGGCAGTAGTCTTTTTAACTC 59.245 41.667 0.00 0.00 0.00 3.01
562 572 4.714632 TGCAGGCAGTAGTCTTTTTAACT 58.285 39.130 0.00 0.00 0.00 2.24
563 573 4.755123 TCTGCAGGCAGTAGTCTTTTTAAC 59.245 41.667 19.75 0.00 43.96 2.01
564 574 4.755123 GTCTGCAGGCAGTAGTCTTTTTAA 59.245 41.667 14.88 0.00 43.96 1.52
565 575 4.315803 GTCTGCAGGCAGTAGTCTTTTTA 58.684 43.478 14.88 0.00 43.96 1.52
566 576 3.142174 GTCTGCAGGCAGTAGTCTTTTT 58.858 45.455 14.88 0.00 43.96 1.94
567 577 2.551071 GGTCTGCAGGCAGTAGTCTTTT 60.551 50.000 21.89 0.00 43.96 2.27
568 578 1.002544 GGTCTGCAGGCAGTAGTCTTT 59.997 52.381 21.89 0.00 43.96 2.52
569 579 0.610687 GGTCTGCAGGCAGTAGTCTT 59.389 55.000 21.89 0.00 43.96 3.01
570 580 1.261238 GGGTCTGCAGGCAGTAGTCT 61.261 60.000 21.89 0.00 43.96 3.24
571 581 1.219393 GGGTCTGCAGGCAGTAGTC 59.781 63.158 21.89 0.43 43.96 2.59
572 582 1.127567 TTGGGTCTGCAGGCAGTAGT 61.128 55.000 21.89 0.00 43.96 2.73
573 583 0.036732 TTTGGGTCTGCAGGCAGTAG 59.963 55.000 21.89 0.00 43.96 2.57
574 584 0.250727 GTTTGGGTCTGCAGGCAGTA 60.251 55.000 21.89 2.12 43.96 2.74
575 585 1.529244 GTTTGGGTCTGCAGGCAGT 60.529 57.895 21.89 0.00 43.96 4.40
576 586 2.620112 CGTTTGGGTCTGCAGGCAG 61.620 63.158 21.89 14.97 44.86 4.85
577 587 2.594303 CGTTTGGGTCTGCAGGCA 60.594 61.111 21.89 0.00 0.00 4.75
578 588 2.281484 TCGTTTGGGTCTGCAGGC 60.281 61.111 15.13 13.00 0.00 4.85
579 589 1.966451 GGTCGTTTGGGTCTGCAGG 60.966 63.158 15.13 0.00 0.00 4.85
580 590 0.951040 GAGGTCGTTTGGGTCTGCAG 60.951 60.000 7.63 7.63 0.00 4.41
581 591 1.070786 GAGGTCGTTTGGGTCTGCA 59.929 57.895 0.00 0.00 0.00 4.41
582 592 0.250338 AAGAGGTCGTTTGGGTCTGC 60.250 55.000 0.00 0.00 0.00 4.26
583 593 1.512926 CAAGAGGTCGTTTGGGTCTG 58.487 55.000 0.00 0.00 0.00 3.51
584 594 0.250338 GCAAGAGGTCGTTTGGGTCT 60.250 55.000 0.00 0.00 0.00 3.85
585 595 0.534203 TGCAAGAGGTCGTTTGGGTC 60.534 55.000 0.00 0.00 0.00 4.46
586 596 0.535102 CTGCAAGAGGTCGTTTGGGT 60.535 55.000 0.00 0.00 34.07 4.51
587 597 0.250295 TCTGCAAGAGGTCGTTTGGG 60.250 55.000 0.00 0.00 38.67 4.12
588 598 3.305709 TCTGCAAGAGGTCGTTTGG 57.694 52.632 0.00 0.00 38.67 3.28
598 608 1.323271 CGCCTACCTCCTCTGCAAGA 61.323 60.000 0.00 0.00 43.69 3.02
599 609 1.142748 CGCCTACCTCCTCTGCAAG 59.857 63.158 0.00 0.00 0.00 4.01
600 610 3.019003 GCGCCTACCTCCTCTGCAA 62.019 63.158 0.00 0.00 0.00 4.08
601 611 3.461773 GCGCCTACCTCCTCTGCA 61.462 66.667 0.00 0.00 0.00 4.41
602 612 3.438017 CTGCGCCTACCTCCTCTGC 62.438 68.421 4.18 0.00 0.00 4.26
603 613 2.811101 CTGCGCCTACCTCCTCTG 59.189 66.667 4.18 0.00 0.00 3.35
604 614 3.151022 GCTGCGCCTACCTCCTCT 61.151 66.667 4.18 0.00 0.00 3.69
605 615 2.521958 TTTGCTGCGCCTACCTCCTC 62.522 60.000 4.18 0.00 0.00 3.71
606 616 2.527951 CTTTGCTGCGCCTACCTCCT 62.528 60.000 4.18 0.00 0.00 3.69
607 617 2.046314 TTTGCTGCGCCTACCTCC 60.046 61.111 4.18 0.00 0.00 4.30
608 618 0.673644 TTCTTTGCTGCGCCTACCTC 60.674 55.000 4.18 0.00 0.00 3.85
609 619 0.250727 TTTCTTTGCTGCGCCTACCT 60.251 50.000 4.18 0.00 0.00 3.08
610 620 0.169009 CTTTCTTTGCTGCGCCTACC 59.831 55.000 4.18 0.00 0.00 3.18
611 621 0.875059 ACTTTCTTTGCTGCGCCTAC 59.125 50.000 4.18 0.00 0.00 3.18
612 622 0.874390 CACTTTCTTTGCTGCGCCTA 59.126 50.000 4.18 0.00 0.00 3.93
613 623 0.819259 TCACTTTCTTTGCTGCGCCT 60.819 50.000 4.18 0.00 0.00 5.52
614 624 0.386478 CTCACTTTCTTTGCTGCGCC 60.386 55.000 4.18 0.00 0.00 6.53
615 625 0.386478 CCTCACTTTCTTTGCTGCGC 60.386 55.000 0.00 0.00 0.00 6.09
616 626 1.196354 CTCCTCACTTTCTTTGCTGCG 59.804 52.381 0.00 0.00 0.00 5.18
617 627 2.483491 CTCTCCTCACTTTCTTTGCTGC 59.517 50.000 0.00 0.00 0.00 5.25
618 628 3.995705 CTCTCTCCTCACTTTCTTTGCTG 59.004 47.826 0.00 0.00 0.00 4.41
619 629 3.900601 TCTCTCTCCTCACTTTCTTTGCT 59.099 43.478 0.00 0.00 0.00 3.91
620 630 4.021544 TCTCTCTCTCCTCACTTTCTTTGC 60.022 45.833 0.00 0.00 0.00 3.68
621 631 5.336690 CCTCTCTCTCTCCTCACTTTCTTTG 60.337 48.000 0.00 0.00 0.00 2.77
622 632 4.772100 CCTCTCTCTCTCCTCACTTTCTTT 59.228 45.833 0.00 0.00 0.00 2.52
623 633 4.044065 TCCTCTCTCTCTCCTCACTTTCTT 59.956 45.833 0.00 0.00 0.00 2.52
624 634 3.591527 TCCTCTCTCTCTCCTCACTTTCT 59.408 47.826 0.00 0.00 0.00 2.52
625 635 3.963129 TCCTCTCTCTCTCCTCACTTTC 58.037 50.000 0.00 0.00 0.00 2.62
626 636 4.017591 TCATCCTCTCTCTCTCCTCACTTT 60.018 45.833 0.00 0.00 0.00 2.66
627 637 3.527253 TCATCCTCTCTCTCTCCTCACTT 59.473 47.826 0.00 0.00 0.00 3.16
628 638 3.122480 TCATCCTCTCTCTCTCCTCACT 58.878 50.000 0.00 0.00 0.00 3.41
629 639 3.480470 CTCATCCTCTCTCTCTCCTCAC 58.520 54.545 0.00 0.00 0.00 3.51
630 640 2.158623 GCTCATCCTCTCTCTCTCCTCA 60.159 54.545 0.00 0.00 0.00 3.86
631 641 2.508526 GCTCATCCTCTCTCTCTCCTC 58.491 57.143 0.00 0.00 0.00 3.71
632 642 1.145738 GGCTCATCCTCTCTCTCTCCT 59.854 57.143 0.00 0.00 0.00 3.69
633 643 1.133513 TGGCTCATCCTCTCTCTCTCC 60.134 57.143 0.00 0.00 35.26 3.71
634 644 2.158623 TCTGGCTCATCCTCTCTCTCTC 60.159 54.545 0.00 0.00 35.26 3.20
635 645 1.852309 TCTGGCTCATCCTCTCTCTCT 59.148 52.381 0.00 0.00 35.26 3.10
636 646 2.158623 TCTCTGGCTCATCCTCTCTCTC 60.159 54.545 0.00 0.00 35.26 3.20
637 647 1.852309 TCTCTGGCTCATCCTCTCTCT 59.148 52.381 0.00 0.00 35.26 3.10
638 648 2.233271 CTCTCTGGCTCATCCTCTCTC 58.767 57.143 0.00 0.00 35.26 3.20
639 649 1.133388 CCTCTCTGGCTCATCCTCTCT 60.133 57.143 0.00 0.00 35.26 3.10
640 650 1.331214 CCTCTCTGGCTCATCCTCTC 58.669 60.000 0.00 0.00 35.26 3.20
641 651 0.105555 CCCTCTCTGGCTCATCCTCT 60.106 60.000 0.00 0.00 35.26 3.69
642 652 0.398381 ACCCTCTCTGGCTCATCCTC 60.398 60.000 0.00 0.00 35.26 3.71
643 653 0.043940 AACCCTCTCTGGCTCATCCT 59.956 55.000 0.00 0.00 35.26 3.24
644 654 0.179936 CAACCCTCTCTGGCTCATCC 59.820 60.000 0.00 0.00 0.00 3.51
645 655 1.138661 CTCAACCCTCTCTGGCTCATC 59.861 57.143 0.00 0.00 0.00 2.92
646 656 1.202330 CTCAACCCTCTCTGGCTCAT 58.798 55.000 0.00 0.00 0.00 2.90
647 657 1.548357 GCTCAACCCTCTCTGGCTCA 61.548 60.000 0.00 0.00 0.00 4.26
648 658 1.220477 GCTCAACCCTCTCTGGCTC 59.780 63.158 0.00 0.00 0.00 4.70
649 659 1.229464 AGCTCAACCCTCTCTGGCT 60.229 57.895 0.00 0.00 0.00 4.75
650 660 1.220477 GAGCTCAACCCTCTCTGGC 59.780 63.158 9.40 0.00 0.00 4.85
651 661 1.202330 ATGAGCTCAACCCTCTCTGG 58.798 55.000 22.50 0.00 0.00 3.86
652 662 3.008330 CAAATGAGCTCAACCCTCTCTG 58.992 50.000 22.50 5.53 0.00 3.35
653 663 2.909006 TCAAATGAGCTCAACCCTCTCT 59.091 45.455 22.50 0.00 0.00 3.10
654 664 3.269178 CTCAAATGAGCTCAACCCTCTC 58.731 50.000 22.50 0.00 35.13 3.20
655 665 2.026449 CCTCAAATGAGCTCAACCCTCT 60.026 50.000 22.50 0.00 40.75 3.69
656 666 2.363683 CCTCAAATGAGCTCAACCCTC 58.636 52.381 22.50 0.00 40.75 4.30
657 667 1.005215 CCCTCAAATGAGCTCAACCCT 59.995 52.381 22.50 0.00 40.75 4.34
658 668 1.004745 TCCCTCAAATGAGCTCAACCC 59.995 52.381 22.50 0.00 40.75 4.11
659 669 2.496899 TCCCTCAAATGAGCTCAACC 57.503 50.000 22.50 0.00 40.75 3.77
660 670 4.074970 TCTTTCCCTCAAATGAGCTCAAC 58.925 43.478 22.50 0.00 40.75 3.18
661 671 4.371624 TCTTTCCCTCAAATGAGCTCAA 57.628 40.909 22.50 2.60 40.75 3.02
662 672 4.371624 TTCTTTCCCTCAAATGAGCTCA 57.628 40.909 20.79 20.79 40.75 4.26
663 673 5.474876 TCTTTTCTTTCCCTCAAATGAGCTC 59.525 40.000 6.82 6.82 40.75 4.09
664 674 5.388654 TCTTTTCTTTCCCTCAAATGAGCT 58.611 37.500 4.87 0.00 40.75 4.09
665 675 5.712152 TCTTTTCTTTCCCTCAAATGAGC 57.288 39.130 4.87 0.00 40.75 4.26
666 676 7.042797 TGTTCTTTTCTTTCCCTCAAATGAG 57.957 36.000 3.37 3.37 41.71 2.90
667 677 6.040842 CCTGTTCTTTTCTTTCCCTCAAATGA 59.959 38.462 0.00 0.00 0.00 2.57
668 678 6.040842 TCCTGTTCTTTTCTTTCCCTCAAATG 59.959 38.462 0.00 0.00 0.00 2.32
669 679 6.136155 TCCTGTTCTTTTCTTTCCCTCAAAT 58.864 36.000 0.00 0.00 0.00 2.32
670 680 5.515106 TCCTGTTCTTTTCTTTCCCTCAAA 58.485 37.500 0.00 0.00 0.00 2.69
671 681 5.124036 TCCTGTTCTTTTCTTTCCCTCAA 57.876 39.130 0.00 0.00 0.00 3.02
672 682 4.788925 TCCTGTTCTTTTCTTTCCCTCA 57.211 40.909 0.00 0.00 0.00 3.86
673 683 6.465439 TTTTCCTGTTCTTTTCTTTCCCTC 57.535 37.500 0.00 0.00 0.00 4.30
674 684 5.163405 GCTTTTCCTGTTCTTTTCTTTCCCT 60.163 40.000 0.00 0.00 0.00 4.20
675 685 5.050490 GCTTTTCCTGTTCTTTTCTTTCCC 58.950 41.667 0.00 0.00 0.00 3.97
676 686 5.750547 CAGCTTTTCCTGTTCTTTTCTTTCC 59.249 40.000 0.00 0.00 0.00 3.13
677 687 5.750547 CCAGCTTTTCCTGTTCTTTTCTTTC 59.249 40.000 0.00 0.00 0.00 2.62
678 688 5.187772 ACCAGCTTTTCCTGTTCTTTTCTTT 59.812 36.000 0.00 0.00 0.00 2.52
679 689 4.711846 ACCAGCTTTTCCTGTTCTTTTCTT 59.288 37.500 0.00 0.00 0.00 2.52
680 690 4.098501 CACCAGCTTTTCCTGTTCTTTTCT 59.901 41.667 0.00 0.00 0.00 2.52
681 691 4.097892 TCACCAGCTTTTCCTGTTCTTTTC 59.902 41.667 0.00 0.00 0.00 2.29
682 692 4.023291 TCACCAGCTTTTCCTGTTCTTTT 58.977 39.130 0.00 0.00 0.00 2.27
683 693 3.631250 TCACCAGCTTTTCCTGTTCTTT 58.369 40.909 0.00 0.00 0.00 2.52
684 694 3.217626 CTCACCAGCTTTTCCTGTTCTT 58.782 45.455 0.00 0.00 0.00 2.52
685 695 2.173569 ACTCACCAGCTTTTCCTGTTCT 59.826 45.455 0.00 0.00 0.00 3.01
686 696 2.291741 CACTCACCAGCTTTTCCTGTTC 59.708 50.000 0.00 0.00 0.00 3.18
687 697 2.301346 CACTCACCAGCTTTTCCTGTT 58.699 47.619 0.00 0.00 0.00 3.16
688 698 1.477558 CCACTCACCAGCTTTTCCTGT 60.478 52.381 0.00 0.00 0.00 4.00
689 699 1.242076 CCACTCACCAGCTTTTCCTG 58.758 55.000 0.00 0.00 0.00 3.86
690 700 0.538287 GCCACTCACCAGCTTTTCCT 60.538 55.000 0.00 0.00 0.00 3.36
691 701 1.527433 GGCCACTCACCAGCTTTTCC 61.527 60.000 0.00 0.00 0.00 3.13
692 702 1.527433 GGGCCACTCACCAGCTTTTC 61.527 60.000 4.39 0.00 0.00 2.29
693 703 1.531602 GGGCCACTCACCAGCTTTT 60.532 57.895 4.39 0.00 0.00 2.27
694 704 2.116125 GGGCCACTCACCAGCTTT 59.884 61.111 4.39 0.00 0.00 3.51
695 705 3.971702 GGGGCCACTCACCAGCTT 61.972 66.667 4.39 0.00 0.00 3.74
697 707 4.729918 CTGGGGCCACTCACCAGC 62.730 72.222 6.53 0.00 44.55 4.85
718 728 2.463675 GAACCAACGGAAGCAGCAGC 62.464 60.000 0.00 0.00 42.56 5.25
719 729 1.576421 GAACCAACGGAAGCAGCAG 59.424 57.895 0.00 0.00 0.00 4.24
720 730 1.896660 GGAACCAACGGAAGCAGCA 60.897 57.895 0.00 0.00 0.00 4.41
721 731 1.244019 ATGGAACCAACGGAAGCAGC 61.244 55.000 0.00 0.00 0.00 5.25
722 732 0.523072 CATGGAACCAACGGAAGCAG 59.477 55.000 0.00 0.00 0.00 4.24
723 733 1.523154 GCATGGAACCAACGGAAGCA 61.523 55.000 0.00 0.00 0.00 3.91
724 734 1.212751 GCATGGAACCAACGGAAGC 59.787 57.895 0.00 0.00 0.00 3.86
725 735 0.804989 GAGCATGGAACCAACGGAAG 59.195 55.000 0.00 0.00 0.00 3.46
726 736 0.608035 GGAGCATGGAACCAACGGAA 60.608 55.000 0.00 0.00 0.00 4.30
727 737 1.002624 GGAGCATGGAACCAACGGA 60.003 57.895 0.00 0.00 0.00 4.69
728 738 2.046285 GGGAGCATGGAACCAACGG 61.046 63.158 0.00 0.00 0.00 4.44
729 739 0.680921 ATGGGAGCATGGAACCAACG 60.681 55.000 0.00 0.00 36.44 4.10
730 740 2.092429 TCTATGGGAGCATGGAACCAAC 60.092 50.000 0.00 0.00 36.44 3.77
731 741 2.204463 TCTATGGGAGCATGGAACCAA 58.796 47.619 0.00 0.00 36.44 3.67
732 742 1.891933 TCTATGGGAGCATGGAACCA 58.108 50.000 0.00 0.00 37.41 3.67
733 743 3.620966 GCTATCTATGGGAGCATGGAACC 60.621 52.174 0.00 0.00 36.20 3.62
734 744 3.262915 AGCTATCTATGGGAGCATGGAAC 59.737 47.826 0.00 0.00 38.73 3.62
735 745 3.262660 CAGCTATCTATGGGAGCATGGAA 59.737 47.826 0.00 0.00 38.73 3.53
736 746 2.836372 CAGCTATCTATGGGAGCATGGA 59.164 50.000 0.00 0.00 38.73 3.41
737 747 2.680221 GCAGCTATCTATGGGAGCATGG 60.680 54.545 0.00 0.00 38.73 3.66
738 748 2.236644 AGCAGCTATCTATGGGAGCATG 59.763 50.000 0.00 0.00 38.73 4.06
739 749 2.500910 GAGCAGCTATCTATGGGAGCAT 59.499 50.000 0.00 0.00 38.73 3.79
740 750 1.898472 GAGCAGCTATCTATGGGAGCA 59.102 52.381 0.00 0.00 38.73 4.26
741 751 1.206849 GGAGCAGCTATCTATGGGAGC 59.793 57.143 0.00 0.00 36.42 4.70
742 752 2.533916 TGGAGCAGCTATCTATGGGAG 58.466 52.381 0.00 0.00 0.00 4.30
743 753 2.702270 TGGAGCAGCTATCTATGGGA 57.298 50.000 0.00 0.00 0.00 4.37
744 754 3.181482 CGTATGGAGCAGCTATCTATGGG 60.181 52.174 0.00 0.00 0.00 4.00
745 755 3.696548 TCGTATGGAGCAGCTATCTATGG 59.303 47.826 0.00 1.18 0.00 2.74
746 756 4.397730 AGTCGTATGGAGCAGCTATCTATG 59.602 45.833 0.00 0.00 0.00 2.23
747 757 4.594970 AGTCGTATGGAGCAGCTATCTAT 58.405 43.478 0.00 0.00 0.00 1.98
748 758 4.022413 AGTCGTATGGAGCAGCTATCTA 57.978 45.455 0.00 0.00 0.00 1.98
749 759 2.870175 AGTCGTATGGAGCAGCTATCT 58.130 47.619 0.00 0.00 0.00 1.98
750 760 3.651803 AAGTCGTATGGAGCAGCTATC 57.348 47.619 0.00 0.00 0.00 2.08
751 761 5.730296 ATAAAGTCGTATGGAGCAGCTAT 57.270 39.130 0.00 0.00 0.00 2.97
752 762 5.334646 CGTATAAAGTCGTATGGAGCAGCTA 60.335 44.000 0.00 0.00 0.00 3.32
753 763 4.556898 CGTATAAAGTCGTATGGAGCAGCT 60.557 45.833 0.00 0.00 0.00 4.24
754 764 3.669122 CGTATAAAGTCGTATGGAGCAGC 59.331 47.826 0.00 0.00 0.00 5.25
755 765 3.669122 GCGTATAAAGTCGTATGGAGCAG 59.331 47.826 0.00 0.00 0.00 4.24
756 766 3.067040 TGCGTATAAAGTCGTATGGAGCA 59.933 43.478 0.00 0.00 0.00 4.26
757 767 3.635331 TGCGTATAAAGTCGTATGGAGC 58.365 45.455 0.00 0.00 0.00 4.70
758 768 4.090066 GCATGCGTATAAAGTCGTATGGAG 59.910 45.833 0.00 0.00 45.18 3.86
759 769 3.985279 GCATGCGTATAAAGTCGTATGGA 59.015 43.478 0.00 0.00 45.18 3.41
760 770 3.738791 TGCATGCGTATAAAGTCGTATGG 59.261 43.478 14.09 1.32 45.18 2.74
761 771 4.965042 TGCATGCGTATAAAGTCGTATG 57.035 40.909 14.09 10.22 46.74 2.39
762 772 6.153756 TGTATGCATGCGTATAAAGTCGTAT 58.846 36.000 21.99 3.38 33.26 3.06
763 773 5.521544 TGTATGCATGCGTATAAAGTCGTA 58.478 37.500 21.99 0.00 0.00 3.43
764 774 4.364860 TGTATGCATGCGTATAAAGTCGT 58.635 39.130 21.99 0.00 0.00 4.34
765 775 4.965042 TGTATGCATGCGTATAAAGTCG 57.035 40.909 21.99 0.00 0.00 4.18
778 788 1.694150 ACGGTAGCCTCATGTATGCAT 59.306 47.619 3.79 3.79 35.32 3.96
779 789 1.119684 ACGGTAGCCTCATGTATGCA 58.880 50.000 0.00 0.00 0.00 3.96
780 790 2.240493 AACGGTAGCCTCATGTATGC 57.760 50.000 0.00 0.00 0.00 3.14
781 791 2.872245 CCAAACGGTAGCCTCATGTATG 59.128 50.000 0.00 0.00 0.00 2.39
782 792 2.504175 ACCAAACGGTAGCCTCATGTAT 59.496 45.455 0.00 0.00 33.92 2.29
783 793 1.903860 ACCAAACGGTAGCCTCATGTA 59.096 47.619 0.00 0.00 33.92 2.29
784 794 0.690762 ACCAAACGGTAGCCTCATGT 59.309 50.000 0.00 0.00 33.92 3.21
785 795 2.684001 TACCAAACGGTAGCCTCATG 57.316 50.000 0.00 0.00 38.03 3.07
786 796 3.541632 CAATACCAAACGGTAGCCTCAT 58.458 45.455 0.00 0.00 42.34 2.90
787 797 2.937873 GCAATACCAAACGGTAGCCTCA 60.938 50.000 0.00 0.00 42.34 3.86
788 798 1.669265 GCAATACCAAACGGTAGCCTC 59.331 52.381 0.00 0.00 42.34 4.70
789 799 1.680860 GGCAATACCAAACGGTAGCCT 60.681 52.381 12.40 0.00 42.84 4.58
790 800 0.736636 GGCAATACCAAACGGTAGCC 59.263 55.000 6.26 6.26 42.34 3.93
801 811 1.810959 TGTACAACGGTGGCAATACC 58.189 50.000 4.97 0.00 37.37 2.73
802 812 2.477189 GCATGTACAACGGTGGCAATAC 60.477 50.000 4.97 0.00 0.00 1.89
803 813 1.740585 GCATGTACAACGGTGGCAATA 59.259 47.619 4.97 0.00 0.00 1.90
804 814 0.525761 GCATGTACAACGGTGGCAAT 59.474 50.000 4.97 0.00 0.00 3.56
805 815 1.519751 GGCATGTACAACGGTGGCAA 61.520 55.000 4.97 0.00 33.96 4.52
806 816 1.969064 GGCATGTACAACGGTGGCA 60.969 57.895 4.97 3.56 33.96 4.92
807 817 2.696759 GGGCATGTACAACGGTGGC 61.697 63.158 4.97 11.25 33.35 5.01
808 818 1.002624 AGGGCATGTACAACGGTGG 60.003 57.895 4.97 0.00 0.00 4.61
809 819 0.321210 TCAGGGCATGTACAACGGTG 60.321 55.000 0.00 0.00 0.00 4.94
810 820 0.398696 TTCAGGGCATGTACAACGGT 59.601 50.000 0.00 0.00 0.00 4.83
811 821 0.802494 GTTCAGGGCATGTACAACGG 59.198 55.000 0.00 0.00 0.00 4.44
812 822 0.802494 GGTTCAGGGCATGTACAACG 59.198 55.000 10.93 0.00 31.17 4.10
813 823 1.812571 CTGGTTCAGGGCATGTACAAC 59.187 52.381 10.93 2.73 31.17 3.32
814 824 1.423541 ACTGGTTCAGGGCATGTACAA 59.576 47.619 10.93 0.00 35.51 2.41
815 825 1.064003 ACTGGTTCAGGGCATGTACA 58.936 50.000 10.93 0.00 35.51 2.90
816 826 3.343941 TTACTGGTTCAGGGCATGTAC 57.656 47.619 0.00 0.00 35.51 2.90
817 827 5.702065 TTATTACTGGTTCAGGGCATGTA 57.298 39.130 0.00 0.00 35.51 2.29
818 828 4.584638 TTATTACTGGTTCAGGGCATGT 57.415 40.909 0.00 0.00 35.51 3.21
819 829 5.913137 TTTTATTACTGGTTCAGGGCATG 57.087 39.130 0.00 0.00 35.51 4.06
820 830 6.252995 TCTTTTTATTACTGGTTCAGGGCAT 58.747 36.000 0.00 0.00 35.51 4.40
821 831 5.636123 TCTTTTTATTACTGGTTCAGGGCA 58.364 37.500 0.00 0.00 35.51 5.36
822 832 6.775594 ATCTTTTTATTACTGGTTCAGGGC 57.224 37.500 0.00 0.00 35.51 5.19
837 847 9.738832 GCGCCACCTTTATTATTTATCTTTTTA 57.261 29.630 0.00 0.00 0.00 1.52
976 988 1.880340 CGAGATCCTTGCGGCACTC 60.880 63.158 0.05 4.74 0.00 3.51
1062 1074 4.506255 CCCCTGTTCCGGATGCCC 62.506 72.222 4.15 0.00 0.00 5.36
1066 1078 2.366972 CCTCCCCCTGTTCCGGAT 60.367 66.667 4.15 0.00 0.00 4.18
1144 1156 3.640407 GGTGCACAGGAGAGGCCA 61.640 66.667 20.43 0.00 40.02 5.36
1191 1203 0.261991 AGTCCTCCATCTTCCCGCTA 59.738 55.000 0.00 0.00 0.00 4.26
1359 1371 6.912591 GCCCTACAAATATCGACATTTCTTTG 59.087 38.462 0.00 0.00 0.00 2.77
1405 1417 6.638873 CGATAGTCCTATGAGACACACAATTC 59.361 42.308 0.00 0.00 39.34 2.17
1414 1426 3.815962 TGTGCTCGATAGTCCTATGAGAC 59.184 47.826 13.36 0.00 37.01 3.36
1436 1448 1.375780 GCCACCAATGCGCCAATTT 60.376 52.632 4.18 0.00 0.00 1.82
1461 1473 6.387041 AACATTGAGATGCATCACAATAGG 57.613 37.500 36.11 29.45 43.15 2.57
1462 1474 7.255569 ACAAACATTGAGATGCATCACAATAG 58.744 34.615 36.11 31.06 43.15 1.73
1479 1493 6.215636 ACATCTAAGAGGGTCCTACAAACATT 59.784 38.462 0.00 0.00 0.00 2.71
1488 1502 4.271807 TCATCACATCTAAGAGGGTCCT 57.728 45.455 0.00 0.00 0.00 3.85
1557 1571 4.533311 AGGAACAATTCATTTGGCCAAGAT 59.467 37.500 19.48 12.29 39.80 2.40
1603 1617 4.826274 AATCAGCTGAGCTAACAACCTA 57.174 40.909 22.96 0.00 36.40 3.08
1615 1629 9.671279 TCTTAATCACAATCTAAAATCAGCTGA 57.329 29.630 20.79 20.79 0.00 4.26
1616 1630 9.713740 GTCTTAATCACAATCTAAAATCAGCTG 57.286 33.333 7.63 7.63 0.00 4.24
1638 1652 5.869649 AACAAAGCCTAACAAATGGTCTT 57.130 34.783 0.00 0.00 0.00 3.01
1672 1686 7.613801 TGTTAGCACTTACCCAACATAAATCAT 59.386 33.333 0.00 0.00 0.00 2.45
1684 1698 4.440112 GCCAATTCATGTTAGCACTTACCC 60.440 45.833 0.00 0.00 0.00 3.69
1852 1868 9.823647 GACTAGACCAATTGAGATTGAGATAAA 57.176 33.333 7.12 0.00 44.37 1.40
1900 1916 5.829924 AGATAGCAATTTTTCATCCCGTCAT 59.170 36.000 0.00 0.00 0.00 3.06
1904 1920 6.135290 TCAAGATAGCAATTTTTCATCCCG 57.865 37.500 0.00 0.00 0.00 5.14
1981 1997 3.703556 TGGCCACCAAATTATACACCATG 59.296 43.478 0.00 0.00 0.00 3.66
2046 2062 8.601845 TTTGAGAGTGAAACATAAAAGATCGA 57.398 30.769 0.00 0.00 41.43 3.59
2100 2116 5.468540 AATTTAGTTTGGCCACTCTTTCC 57.531 39.130 3.88 0.00 0.00 3.13
2443 2459 9.655769 CATGTAATAGTTAATTCATCAGTGCAC 57.344 33.333 9.40 9.40 0.00 4.57
2755 2771 2.367241 TGCAGAGTGGCAGTAACTGTAA 59.633 45.455 11.38 0.58 39.25 2.41
2964 3151 4.219070 AGTTTGCTTATGATTTGCAGCTCA 59.781 37.500 3.13 3.13 38.01 4.26
3130 3317 2.432444 TGGATGTAAACTCGCCCTTTG 58.568 47.619 0.00 0.00 0.00 2.77
3347 3534 6.823497 AGGTTAGCTTTTCATAAGCCGTATA 58.177 36.000 5.93 0.00 44.01 1.47
3361 3548 2.094338 CGGTCTTACGGAGGTTAGCTTT 60.094 50.000 0.00 0.00 0.00 3.51
3374 3561 0.109412 CTCGGTCCACACGGTCTTAC 60.109 60.000 0.00 0.00 0.00 2.34
3549 3736 5.592688 TCTCGTGATGTTTTCCCTTTTCTTT 59.407 36.000 0.00 0.00 0.00 2.52
3550 3737 5.130350 TCTCGTGATGTTTTCCCTTTTCTT 58.870 37.500 0.00 0.00 0.00 2.52
3551 3738 4.714632 TCTCGTGATGTTTTCCCTTTTCT 58.285 39.130 0.00 0.00 0.00 2.52
3552 3739 4.083271 CCTCTCGTGATGTTTTCCCTTTTC 60.083 45.833 0.00 0.00 0.00 2.29
3553 3740 3.821033 CCTCTCGTGATGTTTTCCCTTTT 59.179 43.478 0.00 0.00 0.00 2.27
3600 3793 5.428184 TGATATACATTGGTGTGTGGTCA 57.572 39.130 0.00 0.00 39.39 4.02
3815 4008 6.883756 TGTGGTAGATAACATCTTTTCATGCA 59.116 34.615 0.00 0.00 40.76 3.96
3890 4083 6.647334 TGCATTGATCTTCAAACACCTTAA 57.353 33.333 0.00 0.00 40.12 1.85
4046 4239 5.353111 CCAAAATGAGCATATGCATGACAA 58.647 37.500 28.62 8.25 45.16 3.18
4055 4248 2.223641 CGCACAGCCAAAATGAGCATAT 60.224 45.455 0.00 0.00 34.41 1.78
4076 4269 8.870242 GTGAATGTAACACGATAAACTTTACC 57.130 34.615 0.00 0.00 0.00 2.85
4379 4596 6.431852 TCTTGAATTCAGATGCAGTCATGAAA 59.568 34.615 8.41 0.00 31.96 2.69
4448 4667 7.064253 CGGATCGGGGATTCAGTTATAATTAAC 59.936 40.741 0.00 0.00 38.39 2.01
4455 4674 1.623811 CCGGATCGGGGATTCAGTTAT 59.376 52.381 11.44 0.00 44.15 1.89
4458 4677 3.550974 CCGGATCGGGGATTCAGT 58.449 61.111 11.44 0.00 44.15 3.41
4468 4687 0.588252 GATTGATGCCAACCGGATCG 59.412 55.000 9.46 0.00 34.72 3.69
4470 4689 2.026641 CTTGATTGATGCCAACCGGAT 58.973 47.619 9.46 0.00 34.72 4.18
4517 4736 5.432645 TGGTTGTGTTTGTCTGATGTTCTA 58.567 37.500 0.00 0.00 0.00 2.10
4518 4737 4.269183 TGGTTGTGTTTGTCTGATGTTCT 58.731 39.130 0.00 0.00 0.00 3.01
4519 4738 4.630894 TGGTTGTGTTTGTCTGATGTTC 57.369 40.909 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.