Multiple sequence alignment - TraesCS5A01G146900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G146900 chr5A 100.000 2912 0 0 1 2912 324074612 324077523 0.000000e+00 5378.0
1 TraesCS5A01G146900 chr5D 92.075 1123 44 13 1042 2160 232136845 232135764 0.000000e+00 1539.0
2 TraesCS5A01G146900 chr5D 93.416 729 47 1 2184 2912 232134148 232133421 0.000000e+00 1079.0
3 TraesCS5A01G146900 chr5D 91.277 321 13 5 721 1028 232137231 232136913 9.650000e-115 424.0
4 TraesCS5A01G146900 chr5D 79.812 213 30 13 1 206 232137829 232137623 3.020000e-30 143.0
5 TraesCS5A01G146900 chr5B 92.007 1076 43 11 1042 2104 273141412 273142457 0.000000e+00 1471.0
6 TraesCS5A01G146900 chr5B 97.115 312 8 1 718 1028 273141033 273141344 2.570000e-145 525.0
7 TraesCS5A01G146900 chr5B 95.833 120 5 0 1 120 273139585 273139704 8.230000e-46 195.0
8 TraesCS5A01G146900 chr1D 87.620 727 88 2 2184 2909 291854052 291853327 0.000000e+00 843.0
9 TraesCS5A01G146900 chr1D 83.495 721 119 0 2184 2904 343857240 343856520 0.000000e+00 673.0
10 TraesCS5A01G146900 chr1D 85.938 64 8 1 600 663 199455689 199455751 1.870000e-07 67.6
11 TraesCS5A01G146900 chr1B 86.915 726 94 1 2184 2909 582327185 582327909 0.000000e+00 813.0
12 TraesCS5A01G146900 chr2D 83.448 725 120 0 2184 2908 95192554 95191830 0.000000e+00 675.0
13 TraesCS5A01G146900 chr1A 83.518 722 119 0 2187 2908 48775303 48774582 0.000000e+00 675.0
14 TraesCS5A01G146900 chr1A 83.518 722 119 0 2187 2908 577060992 577060271 0.000000e+00 675.0
15 TraesCS5A01G146900 chr7D 83.172 725 122 0 2184 2908 371841163 371840439 0.000000e+00 664.0
16 TraesCS5A01G146900 chr4A 83.172 725 119 2 2184 2908 232269747 232269026 0.000000e+00 660.0
17 TraesCS5A01G146900 chr2B 88.525 61 6 1 514 573 464506855 464506795 4.030000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G146900 chr5A 324074612 324077523 2911 False 5378.000000 5378 100.000 1 2912 1 chr5A.!!$F1 2911
1 TraesCS5A01G146900 chr5D 232133421 232137829 4408 True 796.250000 1539 89.145 1 2912 4 chr5D.!!$R1 2911
2 TraesCS5A01G146900 chr5B 273139585 273142457 2872 False 730.333333 1471 94.985 1 2104 3 chr5B.!!$F1 2103
3 TraesCS5A01G146900 chr1D 291853327 291854052 725 True 843.000000 843 87.620 2184 2909 1 chr1D.!!$R1 725
4 TraesCS5A01G146900 chr1D 343856520 343857240 720 True 673.000000 673 83.495 2184 2904 1 chr1D.!!$R2 720
5 TraesCS5A01G146900 chr1B 582327185 582327909 724 False 813.000000 813 86.915 2184 2909 1 chr1B.!!$F1 725
6 TraesCS5A01G146900 chr2D 95191830 95192554 724 True 675.000000 675 83.448 2184 2908 1 chr2D.!!$R1 724
7 TraesCS5A01G146900 chr1A 48774582 48775303 721 True 675.000000 675 83.518 2187 2908 1 chr1A.!!$R1 721
8 TraesCS5A01G146900 chr1A 577060271 577060992 721 True 675.000000 675 83.518 2187 2908 1 chr1A.!!$R2 721
9 TraesCS5A01G146900 chr7D 371840439 371841163 724 True 664.000000 664 83.172 2184 2908 1 chr7D.!!$R1 724
10 TraesCS5A01G146900 chr4A 232269026 232269747 721 True 660.000000 660 83.172 2184 2908 1 chr4A.!!$R1 724

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
224 235 0.036765 ACGGTTTAAGCTCCATCGCA 60.037 50.0 0.0 0.0 0.0 5.10 F
910 2277 0.319727 ACGACGATAAAACGCCCACA 60.320 50.0 0.0 0.0 36.7 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1750 3185 0.179094 TTGCCTTCTGTCACGAACGT 60.179 50.0 0.00 0.0 0.00 3.99 R
2460 5488 0.244994 CTCTACAGAGTGGCGCACTT 59.755 55.0 10.83 0.0 45.44 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 2.094675 CCGATTTTGATTGCAGGGAGT 58.905 47.619 0.00 0.00 0.00 3.85
99 108 2.428530 GGAAAGGAATGGAATGACCTGC 59.571 50.000 0.00 0.00 39.86 4.85
108 117 1.001641 AATGACCTGCCTCTGTGCC 60.002 57.895 0.00 0.00 0.00 5.01
120 129 1.675641 CTGTGCCCACTAACCCTGC 60.676 63.158 0.00 0.00 0.00 4.85
121 130 2.410322 CTGTGCCCACTAACCCTGCA 62.410 60.000 0.00 0.00 0.00 4.41
122 131 1.971695 GTGCCCACTAACCCTGCAC 60.972 63.158 0.00 0.00 44.53 4.57
123 132 2.746277 GCCCACTAACCCTGCACG 60.746 66.667 0.00 0.00 0.00 5.34
124 133 2.746277 CCCACTAACCCTGCACGC 60.746 66.667 0.00 0.00 0.00 5.34
125 134 2.746277 CCACTAACCCTGCACGCC 60.746 66.667 0.00 0.00 0.00 5.68
126 135 2.347490 CACTAACCCTGCACGCCT 59.653 61.111 0.00 0.00 0.00 5.52
127 136 1.302511 CACTAACCCTGCACGCCTT 60.303 57.895 0.00 0.00 0.00 4.35
131 140 0.248289 TAACCCTGCACGCCTTCTAC 59.752 55.000 0.00 0.00 0.00 2.59
139 148 2.005560 GCACGCCTTCTACACCTTACC 61.006 57.143 0.00 0.00 0.00 2.85
153 162 0.979187 CTTACCCTGTCCCCGCCTTA 60.979 60.000 0.00 0.00 0.00 2.69
155 164 0.562177 TACCCTGTCCCCGCCTTATA 59.438 55.000 0.00 0.00 0.00 0.98
185 196 6.923928 AAAACAAAAAGACAATGGTGGATG 57.076 33.333 0.00 0.00 0.00 3.51
186 197 3.993920 ACAAAAAGACAATGGTGGATGC 58.006 40.909 0.00 0.00 0.00 3.91
187 198 3.387374 ACAAAAAGACAATGGTGGATGCA 59.613 39.130 0.00 0.00 0.00 3.96
188 199 3.947910 AAAAGACAATGGTGGATGCAG 57.052 42.857 0.00 0.00 0.00 4.41
189 200 1.843368 AAGACAATGGTGGATGCAGG 58.157 50.000 0.00 0.00 0.00 4.85
190 201 0.994247 AGACAATGGTGGATGCAGGA 59.006 50.000 0.00 0.00 0.00 3.86
191 202 1.355381 AGACAATGGTGGATGCAGGAA 59.645 47.619 0.00 0.00 0.00 3.36
192 203 1.747355 GACAATGGTGGATGCAGGAAG 59.253 52.381 0.00 0.00 0.00 3.46
193 204 1.355381 ACAATGGTGGATGCAGGAAGA 59.645 47.619 0.00 0.00 0.00 2.87
194 205 2.024655 ACAATGGTGGATGCAGGAAGAT 60.025 45.455 0.00 0.00 0.00 2.40
195 206 2.359981 ATGGTGGATGCAGGAAGATG 57.640 50.000 0.00 0.00 0.00 2.90
196 207 0.394762 TGGTGGATGCAGGAAGATGC 60.395 55.000 0.00 0.00 46.68 3.91
197 208 0.106819 GGTGGATGCAGGAAGATGCT 60.107 55.000 0.00 0.00 46.63 3.79
198 209 1.141657 GGTGGATGCAGGAAGATGCTA 59.858 52.381 0.00 0.00 46.63 3.49
199 210 2.492012 GTGGATGCAGGAAGATGCTAG 58.508 52.381 0.00 0.00 46.63 3.42
200 211 1.202734 TGGATGCAGGAAGATGCTAGC 60.203 52.381 8.10 8.10 46.63 3.42
201 212 1.202734 GGATGCAGGAAGATGCTAGCA 60.203 52.381 21.85 21.85 46.63 3.49
202 213 2.569059 GATGCAGGAAGATGCTAGCAA 58.431 47.619 23.54 5.32 46.63 3.91
203 214 2.034104 TGCAGGAAGATGCTAGCAAG 57.966 50.000 23.54 6.95 46.63 4.01
204 215 1.280133 TGCAGGAAGATGCTAGCAAGT 59.720 47.619 23.54 5.90 46.63 3.16
205 216 2.501316 TGCAGGAAGATGCTAGCAAGTA 59.499 45.455 23.54 0.00 46.63 2.24
206 217 2.869192 GCAGGAAGATGCTAGCAAGTAC 59.131 50.000 23.54 10.58 43.07 2.73
207 218 3.119291 CAGGAAGATGCTAGCAAGTACG 58.881 50.000 23.54 3.56 0.00 3.67
208 219 2.101582 AGGAAGATGCTAGCAAGTACGG 59.898 50.000 23.54 0.00 0.00 4.02
209 220 2.159085 GGAAGATGCTAGCAAGTACGGT 60.159 50.000 23.54 2.30 0.00 4.83
210 221 3.522553 GAAGATGCTAGCAAGTACGGTT 58.477 45.455 23.54 1.41 0.00 4.44
211 222 3.611766 AGATGCTAGCAAGTACGGTTT 57.388 42.857 23.54 0.53 0.00 3.27
212 223 4.730949 AGATGCTAGCAAGTACGGTTTA 57.269 40.909 23.54 0.00 0.00 2.01
213 224 5.080969 AGATGCTAGCAAGTACGGTTTAA 57.919 39.130 23.54 0.00 0.00 1.52
214 225 5.109903 AGATGCTAGCAAGTACGGTTTAAG 58.890 41.667 23.54 0.00 0.00 1.85
215 226 2.997986 TGCTAGCAAGTACGGTTTAAGC 59.002 45.455 16.84 0.00 0.00 3.09
216 227 3.259902 GCTAGCAAGTACGGTTTAAGCT 58.740 45.455 10.63 0.00 34.84 3.74
217 228 3.306434 GCTAGCAAGTACGGTTTAAGCTC 59.694 47.826 10.63 0.00 32.49 4.09
218 229 2.696506 AGCAAGTACGGTTTAAGCTCC 58.303 47.619 0.00 0.00 0.00 4.70
219 230 2.038033 AGCAAGTACGGTTTAAGCTCCA 59.962 45.455 0.00 0.00 0.00 3.86
220 231 3.007635 GCAAGTACGGTTTAAGCTCCAT 58.992 45.455 0.00 0.00 0.00 3.41
221 232 3.063588 GCAAGTACGGTTTAAGCTCCATC 59.936 47.826 0.00 0.00 0.00 3.51
222 233 3.160777 AGTACGGTTTAAGCTCCATCG 57.839 47.619 0.00 0.00 0.00 3.84
223 234 1.591619 GTACGGTTTAAGCTCCATCGC 59.408 52.381 0.00 0.00 0.00 4.58
224 235 0.036765 ACGGTTTAAGCTCCATCGCA 60.037 50.000 0.00 0.00 0.00 5.10
225 236 1.083489 CGGTTTAAGCTCCATCGCAA 58.917 50.000 0.00 0.00 0.00 4.85
226 237 1.466950 CGGTTTAAGCTCCATCGCAAA 59.533 47.619 0.00 0.00 0.00 3.68
227 238 2.095466 CGGTTTAAGCTCCATCGCAAAA 60.095 45.455 0.00 0.00 0.00 2.44
228 239 3.427503 CGGTTTAAGCTCCATCGCAAAAT 60.428 43.478 0.00 0.00 0.00 1.82
229 240 3.859386 GGTTTAAGCTCCATCGCAAAATG 59.141 43.478 0.00 0.00 0.00 2.32
230 241 2.849880 TAAGCTCCATCGCAAAATGC 57.150 45.000 0.00 0.00 40.69 3.56
246 257 7.368750 GCAAAATGCGTGTCTTAGATTTATC 57.631 36.000 0.00 0.00 31.71 1.75
247 258 6.414987 GCAAAATGCGTGTCTTAGATTTATCC 59.585 38.462 0.00 0.00 31.71 2.59
248 259 7.471721 CAAAATGCGTGTCTTAGATTTATCCA 58.528 34.615 0.00 0.00 0.00 3.41
249 260 6.851222 AATGCGTGTCTTAGATTTATCCAG 57.149 37.500 0.00 0.00 0.00 3.86
250 261 5.592104 TGCGTGTCTTAGATTTATCCAGA 57.408 39.130 0.00 0.00 0.00 3.86
251 262 6.161855 TGCGTGTCTTAGATTTATCCAGAT 57.838 37.500 0.00 0.00 0.00 2.90
252 263 7.284919 TGCGTGTCTTAGATTTATCCAGATA 57.715 36.000 0.00 0.00 0.00 1.98
253 264 7.145985 TGCGTGTCTTAGATTTATCCAGATAC 58.854 38.462 0.00 6.45 31.23 2.24
254 265 7.145985 GCGTGTCTTAGATTTATCCAGATACA 58.854 38.462 12.70 0.00 32.71 2.29
255 266 7.327275 GCGTGTCTTAGATTTATCCAGATACAG 59.673 40.741 12.70 8.74 32.71 2.74
256 267 8.568794 CGTGTCTTAGATTTATCCAGATACAGA 58.431 37.037 12.70 0.00 32.71 3.41
257 268 9.906660 GTGTCTTAGATTTATCCAGATACAGAG 57.093 37.037 9.61 0.00 33.06 3.35
258 269 9.083422 TGTCTTAGATTTATCCAGATACAGAGG 57.917 37.037 0.00 0.00 0.00 3.69
259 270 9.084533 GTCTTAGATTTATCCAGATACAGAGGT 57.915 37.037 0.00 0.00 0.00 3.85
260 271 9.661954 TCTTAGATTTATCCAGATACAGAGGTT 57.338 33.333 0.00 0.00 0.00 3.50
261 272 9.703892 CTTAGATTTATCCAGATACAGAGGTTG 57.296 37.037 0.00 0.00 0.00 3.77
262 273 7.682787 AGATTTATCCAGATACAGAGGTTGT 57.317 36.000 0.00 0.00 43.96 3.32
263 274 8.783660 AGATTTATCCAGATACAGAGGTTGTA 57.216 34.615 0.00 0.00 45.86 2.41
274 285 5.148651 ACAGAGGTTGTATCTTGTACACC 57.851 43.478 0.00 0.00 38.56 4.16
275 286 4.838986 ACAGAGGTTGTATCTTGTACACCT 59.161 41.667 0.00 0.00 38.56 4.00
276 287 5.307196 ACAGAGGTTGTATCTTGTACACCTT 59.693 40.000 0.00 0.00 38.56 3.50
277 288 6.495872 ACAGAGGTTGTATCTTGTACACCTTA 59.504 38.462 0.00 0.00 38.56 2.69
278 289 6.812160 CAGAGGTTGTATCTTGTACACCTTAC 59.188 42.308 0.00 0.00 32.85 2.34
279 290 6.046290 AGGTTGTATCTTGTACACCTTACC 57.954 41.667 0.00 0.00 30.42 2.85
280 291 5.783875 AGGTTGTATCTTGTACACCTTACCT 59.216 40.000 0.00 0.00 32.87 3.08
281 292 6.271624 AGGTTGTATCTTGTACACCTTACCTT 59.728 38.462 0.00 0.00 33.53 3.50
282 293 6.370718 GGTTGTATCTTGTACACCTTACCTTG 59.629 42.308 0.00 0.00 0.00 3.61
283 294 6.675413 TGTATCTTGTACACCTTACCTTGT 57.325 37.500 0.00 0.00 0.00 3.16
284 295 6.694447 TGTATCTTGTACACCTTACCTTGTC 58.306 40.000 0.00 0.00 0.00 3.18
285 296 6.495872 TGTATCTTGTACACCTTACCTTGTCT 59.504 38.462 0.00 0.00 0.00 3.41
286 297 5.464030 TCTTGTACACCTTACCTTGTCTC 57.536 43.478 0.00 0.00 0.00 3.36
287 298 5.145564 TCTTGTACACCTTACCTTGTCTCT 58.854 41.667 0.00 0.00 0.00 3.10
288 299 4.866508 TGTACACCTTACCTTGTCTCTG 57.133 45.455 0.00 0.00 0.00 3.35
289 300 2.841442 ACACCTTACCTTGTCTCTGC 57.159 50.000 0.00 0.00 0.00 4.26
290 301 2.047061 ACACCTTACCTTGTCTCTGCA 58.953 47.619 0.00 0.00 0.00 4.41
291 302 2.438021 ACACCTTACCTTGTCTCTGCAA 59.562 45.455 0.00 0.00 0.00 4.08
292 303 3.118038 ACACCTTACCTTGTCTCTGCAAA 60.118 43.478 0.00 0.00 0.00 3.68
293 304 3.882888 CACCTTACCTTGTCTCTGCAAAA 59.117 43.478 0.00 0.00 0.00 2.44
294 305 4.520492 CACCTTACCTTGTCTCTGCAAAAT 59.480 41.667 0.00 0.00 0.00 1.82
295 306 4.520492 ACCTTACCTTGTCTCTGCAAAATG 59.480 41.667 0.00 0.00 0.00 2.32
296 307 4.479619 CTTACCTTGTCTCTGCAAAATGC 58.520 43.478 0.00 0.00 45.29 3.56
297 308 2.590821 ACCTTGTCTCTGCAAAATGCT 58.409 42.857 3.78 0.00 45.31 3.79
298 309 2.961062 ACCTTGTCTCTGCAAAATGCTT 59.039 40.909 3.78 0.00 45.31 3.91
299 310 3.243636 ACCTTGTCTCTGCAAAATGCTTG 60.244 43.478 3.78 0.00 45.31 4.01
300 311 3.243636 CCTTGTCTCTGCAAAATGCTTGT 60.244 43.478 3.78 0.00 45.31 3.16
301 312 3.631145 TGTCTCTGCAAAATGCTTGTC 57.369 42.857 3.78 0.00 45.31 3.18
302 313 3.216800 TGTCTCTGCAAAATGCTTGTCT 58.783 40.909 3.78 0.00 45.31 3.41
303 314 3.633525 TGTCTCTGCAAAATGCTTGTCTT 59.366 39.130 3.78 0.00 45.31 3.01
304 315 4.821260 TGTCTCTGCAAAATGCTTGTCTTA 59.179 37.500 3.78 0.00 45.31 2.10
305 316 5.049198 TGTCTCTGCAAAATGCTTGTCTTAG 60.049 40.000 3.78 0.00 45.31 2.18
306 317 5.180117 GTCTCTGCAAAATGCTTGTCTTAGA 59.820 40.000 3.78 0.00 45.31 2.10
307 318 5.942236 TCTCTGCAAAATGCTTGTCTTAGAT 59.058 36.000 3.78 0.00 45.31 1.98
308 319 6.432162 TCTCTGCAAAATGCTTGTCTTAGATT 59.568 34.615 3.78 0.00 45.31 2.40
309 320 6.985117 TCTGCAAAATGCTTGTCTTAGATTT 58.015 32.000 3.78 0.00 45.31 2.17
310 321 8.109705 TCTGCAAAATGCTTGTCTTAGATTTA 57.890 30.769 3.78 0.00 45.31 1.40
311 322 8.575589 TCTGCAAAATGCTTGTCTTAGATTTAA 58.424 29.630 3.78 0.00 45.31 1.52
312 323 9.195411 CTGCAAAATGCTTGTCTTAGATTTAAA 57.805 29.630 3.78 0.00 45.31 1.52
313 324 8.977505 TGCAAAATGCTTGTCTTAGATTTAAAC 58.022 29.630 3.78 0.00 45.31 2.01
314 325 8.977505 GCAAAATGCTTGTCTTAGATTTAAACA 58.022 29.630 0.00 0.00 40.96 2.83
319 330 8.044060 TGCTTGTCTTAGATTTAAACAGATGG 57.956 34.615 0.00 0.00 0.00 3.51
320 331 7.121168 TGCTTGTCTTAGATTTAAACAGATGGG 59.879 37.037 0.00 0.00 0.00 4.00
321 332 7.415653 GCTTGTCTTAGATTTAAACAGATGGGG 60.416 40.741 0.00 0.00 0.00 4.96
322 333 7.027874 TGTCTTAGATTTAAACAGATGGGGT 57.972 36.000 0.00 0.00 0.00 4.95
323 334 6.884295 TGTCTTAGATTTAAACAGATGGGGTG 59.116 38.462 0.00 0.00 0.00 4.61
324 335 6.884836 GTCTTAGATTTAAACAGATGGGGTGT 59.115 38.462 0.00 0.00 0.00 4.16
325 336 7.393515 GTCTTAGATTTAAACAGATGGGGTGTT 59.606 37.037 0.00 0.00 39.89 3.32
326 337 5.982890 AGATTTAAACAGATGGGGTGTTG 57.017 39.130 0.00 0.00 38.17 3.33
327 338 5.393866 AGATTTAAACAGATGGGGTGTTGT 58.606 37.500 0.00 0.00 38.17 3.32
328 339 6.548321 AGATTTAAACAGATGGGGTGTTGTA 58.452 36.000 0.00 0.00 38.17 2.41
329 340 7.182060 AGATTTAAACAGATGGGGTGTTGTAT 58.818 34.615 0.00 0.00 38.17 2.29
330 341 6.827586 TTTAAACAGATGGGGTGTTGTATC 57.172 37.500 0.00 0.00 38.17 2.24
331 342 4.657814 AAACAGATGGGGTGTTGTATCT 57.342 40.909 0.00 0.00 38.17 1.98
332 343 4.657814 AACAGATGGGGTGTTGTATCTT 57.342 40.909 0.00 0.00 36.76 2.40
333 344 4.222124 ACAGATGGGGTGTTGTATCTTC 57.778 45.455 0.00 0.00 0.00 2.87
334 345 3.846588 ACAGATGGGGTGTTGTATCTTCT 59.153 43.478 0.00 0.00 0.00 2.85
335 346 5.030147 ACAGATGGGGTGTTGTATCTTCTA 58.970 41.667 0.00 0.00 0.00 2.10
336 347 5.487488 ACAGATGGGGTGTTGTATCTTCTAA 59.513 40.000 0.00 0.00 0.00 2.10
337 348 6.012858 ACAGATGGGGTGTTGTATCTTCTAAA 60.013 38.462 0.00 0.00 0.00 1.85
338 349 6.316390 CAGATGGGGTGTTGTATCTTCTAAAC 59.684 42.308 0.00 0.00 0.00 2.01
339 350 4.913784 TGGGGTGTTGTATCTTCTAAACC 58.086 43.478 0.00 0.00 0.00 3.27
340 351 4.600111 TGGGGTGTTGTATCTTCTAAACCT 59.400 41.667 0.00 0.00 0.00 3.50
341 352 5.073965 TGGGGTGTTGTATCTTCTAAACCTT 59.926 40.000 0.00 0.00 0.00 3.50
342 353 6.272792 TGGGGTGTTGTATCTTCTAAACCTTA 59.727 38.462 0.00 0.00 0.00 2.69
343 354 6.596888 GGGGTGTTGTATCTTCTAAACCTTAC 59.403 42.308 0.00 0.00 0.00 2.34
344 355 6.596888 GGGTGTTGTATCTTCTAAACCTTACC 59.403 42.308 0.00 0.00 0.00 2.85
345 356 6.596888 GGTGTTGTATCTTCTAAACCTTACCC 59.403 42.308 0.00 0.00 0.00 3.69
346 357 7.392418 GTGTTGTATCTTCTAAACCTTACCCT 58.608 38.462 0.00 0.00 0.00 4.34
347 358 7.333672 GTGTTGTATCTTCTAAACCTTACCCTG 59.666 40.741 0.00 0.00 0.00 4.45
348 359 7.016858 TGTTGTATCTTCTAAACCTTACCCTGT 59.983 37.037 0.00 0.00 0.00 4.00
349 360 7.179076 TGTATCTTCTAAACCTTACCCTGTC 57.821 40.000 0.00 0.00 0.00 3.51
350 361 5.695424 ATCTTCTAAACCTTACCCTGTCC 57.305 43.478 0.00 0.00 0.00 4.02
351 362 4.759953 TCTTCTAAACCTTACCCTGTCCT 58.240 43.478 0.00 0.00 0.00 3.85
352 363 5.160386 TCTTCTAAACCTTACCCTGTCCTT 58.840 41.667 0.00 0.00 0.00 3.36
353 364 4.903045 TCTAAACCTTACCCTGTCCTTG 57.097 45.455 0.00 0.00 0.00 3.61
354 365 2.287977 AAACCTTACCCTGTCCTTGC 57.712 50.000 0.00 0.00 0.00 4.01
355 366 1.145571 AACCTTACCCTGTCCTTGCA 58.854 50.000 0.00 0.00 0.00 4.08
356 367 1.372501 ACCTTACCCTGTCCTTGCAT 58.627 50.000 0.00 0.00 0.00 3.96
357 368 1.710809 ACCTTACCCTGTCCTTGCATT 59.289 47.619 0.00 0.00 0.00 3.56
358 369 2.094675 CCTTACCCTGTCCTTGCATTG 58.905 52.381 0.00 0.00 0.00 2.82
359 370 1.474077 CTTACCCTGTCCTTGCATTGC 59.526 52.381 0.46 0.46 0.00 3.56
360 371 0.323360 TACCCTGTCCTTGCATTGCC 60.323 55.000 6.12 0.00 0.00 4.52
361 372 1.304713 CCCTGTCCTTGCATTGCCT 60.305 57.895 6.12 0.00 0.00 4.75
362 373 0.901580 CCCTGTCCTTGCATTGCCTT 60.902 55.000 6.12 0.00 0.00 4.35
363 374 0.529378 CCTGTCCTTGCATTGCCTTC 59.471 55.000 6.12 0.00 0.00 3.46
364 375 1.542492 CTGTCCTTGCATTGCCTTCT 58.458 50.000 6.12 0.00 0.00 2.85
365 376 1.201647 CTGTCCTTGCATTGCCTTCTG 59.798 52.381 6.12 0.00 0.00 3.02
366 377 1.251251 GTCCTTGCATTGCCTTCTGT 58.749 50.000 6.12 0.00 0.00 3.41
367 378 2.224744 TGTCCTTGCATTGCCTTCTGTA 60.225 45.455 6.12 0.00 0.00 2.74
368 379 2.162408 GTCCTTGCATTGCCTTCTGTAC 59.838 50.000 6.12 0.00 0.00 2.90
369 380 1.131126 CCTTGCATTGCCTTCTGTACG 59.869 52.381 6.12 0.00 0.00 3.67
370 381 2.076100 CTTGCATTGCCTTCTGTACGA 58.924 47.619 6.12 0.00 0.00 3.43
371 382 2.177394 TGCATTGCCTTCTGTACGAA 57.823 45.000 6.12 0.00 0.00 3.85
372 383 2.499197 TGCATTGCCTTCTGTACGAAA 58.501 42.857 6.12 0.00 0.00 3.46
373 384 2.881513 TGCATTGCCTTCTGTACGAAAA 59.118 40.909 6.12 0.00 0.00 2.29
374 385 3.316588 TGCATTGCCTTCTGTACGAAAAA 59.683 39.130 6.12 0.00 0.00 1.94
392 403 4.873768 AAAAACAAAAAGGCAATGGTCG 57.126 36.364 0.00 0.00 0.00 4.79
393 404 3.810310 AAACAAAAAGGCAATGGTCGA 57.190 38.095 0.00 0.00 0.00 4.20
394 405 4.335400 AAACAAAAAGGCAATGGTCGAT 57.665 36.364 0.00 0.00 0.00 3.59
395 406 3.302365 ACAAAAAGGCAATGGTCGATG 57.698 42.857 0.00 0.00 0.00 3.84
396 407 2.627699 ACAAAAAGGCAATGGTCGATGT 59.372 40.909 0.00 0.00 0.00 3.06
397 408 3.069443 ACAAAAAGGCAATGGTCGATGTT 59.931 39.130 0.00 0.00 0.00 2.71
398 409 3.302365 AAAAGGCAATGGTCGATGTTG 57.698 42.857 0.00 0.00 0.00 3.33
399 410 1.909700 AAGGCAATGGTCGATGTTGT 58.090 45.000 0.00 0.00 0.00 3.32
400 411 2.779755 AGGCAATGGTCGATGTTGTA 57.220 45.000 0.00 0.00 0.00 2.41
401 412 3.281727 AGGCAATGGTCGATGTTGTAT 57.718 42.857 0.00 0.00 0.00 2.29
402 413 3.206150 AGGCAATGGTCGATGTTGTATC 58.794 45.455 0.00 0.00 0.00 2.24
403 414 3.118261 AGGCAATGGTCGATGTTGTATCT 60.118 43.478 0.00 0.00 0.00 1.98
404 415 3.627577 GGCAATGGTCGATGTTGTATCTT 59.372 43.478 0.00 0.00 0.00 2.40
405 416 4.260784 GGCAATGGTCGATGTTGTATCTTC 60.261 45.833 0.00 0.00 0.00 2.87
406 417 4.572389 GCAATGGTCGATGTTGTATCTTCT 59.428 41.667 0.00 0.00 0.00 2.85
407 418 5.753438 GCAATGGTCGATGTTGTATCTTCTA 59.247 40.000 0.00 0.00 0.00 2.10
408 419 6.292381 GCAATGGTCGATGTTGTATCTTCTAC 60.292 42.308 0.00 0.00 0.00 2.59
409 420 5.907866 TGGTCGATGTTGTATCTTCTACA 57.092 39.130 0.00 0.00 0.00 2.74
410 421 5.647589 TGGTCGATGTTGTATCTTCTACAC 58.352 41.667 0.00 0.00 0.00 2.90
411 422 5.041940 GGTCGATGTTGTATCTTCTACACC 58.958 45.833 0.00 0.00 0.00 4.16
412 423 5.163540 GGTCGATGTTGTATCTTCTACACCT 60.164 44.000 0.00 0.00 0.00 4.00
413 424 6.331061 GTCGATGTTGTATCTTCTACACCTT 58.669 40.000 0.00 0.00 0.00 3.50
414 425 7.415989 GGTCGATGTTGTATCTTCTACACCTTA 60.416 40.741 0.00 0.00 0.00 2.69
415 426 7.431668 GTCGATGTTGTATCTTCTACACCTTAC 59.568 40.741 0.00 0.00 0.00 2.34
416 427 6.696148 CGATGTTGTATCTTCTACACCTTACC 59.304 42.308 0.00 0.00 0.00 2.85
417 428 6.290294 TGTTGTATCTTCTACACCTTACCC 57.710 41.667 0.00 0.00 0.00 3.69
418 429 6.021030 TGTTGTATCTTCTACACCTTACCCT 58.979 40.000 0.00 0.00 0.00 4.34
419 430 6.070995 TGTTGTATCTTCTACACCTTACCCTG 60.071 42.308 0.00 0.00 0.00 4.45
420 431 5.586877 TGTATCTTCTACACCTTACCCTGT 58.413 41.667 0.00 0.00 0.00 4.00
421 432 5.655532 TGTATCTTCTACACCTTACCCTGTC 59.344 44.000 0.00 0.00 0.00 3.51
422 433 3.438183 TCTTCTACACCTTACCCTGTCC 58.562 50.000 0.00 0.00 0.00 4.02
423 434 2.242882 TCTACACCTTACCCTGTCCC 57.757 55.000 0.00 0.00 0.00 4.46
424 435 1.720533 TCTACACCTTACCCTGTCCCT 59.279 52.381 0.00 0.00 0.00 4.20
425 436 1.831736 CTACACCTTACCCTGTCCCTG 59.168 57.143 0.00 0.00 0.00 4.45
426 437 1.299976 CACCTTACCCTGTCCCTGC 59.700 63.158 0.00 0.00 0.00 4.85
427 438 1.151899 ACCTTACCCTGTCCCTGCA 60.152 57.895 0.00 0.00 0.00 4.41
428 439 0.770557 ACCTTACCCTGTCCCTGCAA 60.771 55.000 0.00 0.00 0.00 4.08
429 440 0.404040 CCTTACCCTGTCCCTGCAAA 59.596 55.000 0.00 0.00 0.00 3.68
430 441 1.203001 CCTTACCCTGTCCCTGCAAAA 60.203 52.381 0.00 0.00 0.00 2.44
431 442 2.557452 CCTTACCCTGTCCCTGCAAAAT 60.557 50.000 0.00 0.00 0.00 1.82
432 443 2.214376 TACCCTGTCCCTGCAAAATG 57.786 50.000 0.00 0.00 0.00 2.32
433 444 1.187567 ACCCTGTCCCTGCAAAATGC 61.188 55.000 0.00 0.00 45.29 3.56
434 445 0.901580 CCCTGTCCCTGCAAAATGCT 60.902 55.000 3.78 0.00 45.31 3.79
435 446 0.971386 CCTGTCCCTGCAAAATGCTT 59.029 50.000 3.78 0.00 45.31 3.91
436 447 1.337447 CCTGTCCCTGCAAAATGCTTG 60.337 52.381 3.78 0.00 45.31 4.01
437 448 1.342174 CTGTCCCTGCAAAATGCTTGT 59.658 47.619 3.78 0.00 45.31 3.16
438 449 1.340889 TGTCCCTGCAAAATGCTTGTC 59.659 47.619 3.78 0.00 45.31 3.18
439 450 1.615392 GTCCCTGCAAAATGCTTGTCT 59.385 47.619 3.78 0.00 45.31 3.41
440 451 1.614903 TCCCTGCAAAATGCTTGTCTG 59.385 47.619 3.78 0.00 45.31 3.51
441 452 1.342174 CCCTGCAAAATGCTTGTCTGT 59.658 47.619 3.78 0.00 45.31 3.41
442 453 2.608752 CCCTGCAAAATGCTTGTCTGTC 60.609 50.000 3.78 0.00 45.31 3.51
443 454 2.608752 CCTGCAAAATGCTTGTCTGTCC 60.609 50.000 3.78 0.00 45.31 4.02
444 455 1.340889 TGCAAAATGCTTGTCTGTCCC 59.659 47.619 3.78 0.00 45.31 4.46
445 456 1.615392 GCAAAATGCTTGTCTGTCCCT 59.385 47.619 0.00 0.00 40.96 4.20
446 457 2.608752 GCAAAATGCTTGTCTGTCCCTG 60.609 50.000 0.00 0.00 40.96 4.45
447 458 1.251251 AAATGCTTGTCTGTCCCTGC 58.749 50.000 0.00 0.00 0.00 4.85
448 459 0.610232 AATGCTTGTCTGTCCCTGCC 60.610 55.000 0.00 0.00 0.00 4.85
449 460 1.495579 ATGCTTGTCTGTCCCTGCCT 61.496 55.000 0.00 0.00 0.00 4.75
450 461 1.073897 GCTTGTCTGTCCCTGCCTT 59.926 57.895 0.00 0.00 0.00 4.35
451 462 0.957888 GCTTGTCTGTCCCTGCCTTC 60.958 60.000 0.00 0.00 0.00 3.46
452 463 0.689623 CTTGTCTGTCCCTGCCTTCT 59.310 55.000 0.00 0.00 0.00 2.85
453 464 1.902508 CTTGTCTGTCCCTGCCTTCTA 59.097 52.381 0.00 0.00 0.00 2.10
454 465 2.254152 TGTCTGTCCCTGCCTTCTAT 57.746 50.000 0.00 0.00 0.00 1.98
455 466 3.398318 TGTCTGTCCCTGCCTTCTATA 57.602 47.619 0.00 0.00 0.00 1.31
456 467 3.031736 TGTCTGTCCCTGCCTTCTATAC 58.968 50.000 0.00 0.00 0.00 1.47
457 468 2.034812 GTCTGTCCCTGCCTTCTATACG 59.965 54.545 0.00 0.00 0.00 3.06
458 469 2.092049 TCTGTCCCTGCCTTCTATACGA 60.092 50.000 0.00 0.00 0.00 3.43
459 470 2.693591 CTGTCCCTGCCTTCTATACGAA 59.306 50.000 0.00 0.00 0.00 3.85
476 487 9.221933 TCTATACGAAGAAACAAAAAGGCAATA 57.778 29.630 0.00 0.00 0.00 1.90
479 490 7.266922 ACGAAGAAACAAAAAGGCAATAGTA 57.733 32.000 0.00 0.00 0.00 1.82
505 516 3.559242 GCAGAAAGATGCTAGCAAGTAGG 59.441 47.826 23.54 9.41 43.07 3.18
532 888 6.796785 ATTACCCTCATCCCAAAAATCTTG 57.203 37.500 0.00 0.00 0.00 3.02
533 889 4.132122 ACCCTCATCCCAAAAATCTTGT 57.868 40.909 0.00 0.00 0.00 3.16
534 890 4.492646 ACCCTCATCCCAAAAATCTTGTT 58.507 39.130 0.00 0.00 0.00 2.83
535 891 4.907269 ACCCTCATCCCAAAAATCTTGTTT 59.093 37.500 0.00 0.00 0.00 2.83
536 892 5.369404 ACCCTCATCCCAAAAATCTTGTTTT 59.631 36.000 0.00 0.00 0.00 2.43
537 893 6.556874 ACCCTCATCCCAAAAATCTTGTTTTA 59.443 34.615 0.00 0.00 0.00 1.52
538 894 6.873605 CCCTCATCCCAAAAATCTTGTTTTAC 59.126 38.462 0.00 0.00 0.00 2.01
539 895 7.441017 CCTCATCCCAAAAATCTTGTTTTACA 58.559 34.615 0.00 0.00 0.00 2.41
540 896 8.096414 CCTCATCCCAAAAATCTTGTTTTACAT 58.904 33.333 0.00 0.00 0.00 2.29
541 897 9.492973 CTCATCCCAAAAATCTTGTTTTACATT 57.507 29.630 0.00 0.00 0.00 2.71
542 898 9.844257 TCATCCCAAAAATCTTGTTTTACATTT 57.156 25.926 0.00 0.00 0.00 2.32
543 899 9.881529 CATCCCAAAAATCTTGTTTTACATTTG 57.118 29.630 0.00 0.00 0.00 2.32
586 943 9.424319 TCTAACACTGAAACATCTAGACAAATC 57.576 33.333 0.00 0.00 0.00 2.17
593 950 9.092876 CTGAAACATCTAGACAAATCTAACCTC 57.907 37.037 0.00 0.00 36.98 3.85
604 961 7.821846 AGACAAATCTAACCTCTGTCTCAAATC 59.178 37.037 0.00 0.00 42.27 2.17
607 964 5.407407 TCTAACCTCTGTCTCAAATCACC 57.593 43.478 0.00 0.00 0.00 4.02
616 973 6.459066 TCTGTCTCAAATCACCTGTCTTAAG 58.541 40.000 0.00 0.00 0.00 1.85
620 977 7.012327 TGTCTCAAATCACCTGTCTTAAGTTTG 59.988 37.037 1.63 3.80 0.00 2.93
622 979 7.556275 TCTCAAATCACCTGTCTTAAGTTTGTT 59.444 33.333 1.63 0.00 0.00 2.83
627 984 9.574516 AATCACCTGTCTTAAGTTTGTTTAGAT 57.425 29.630 1.63 0.00 0.00 1.98
655 1012 9.485206 AAAGATGTATCTAACACTAAAACGTGT 57.515 29.630 0.00 0.00 42.13 4.49
659 1016 5.840940 ATCTAACACTAAAACGTGTCTGC 57.159 39.130 0.00 0.00 46.71 4.26
663 1020 5.994887 AACACTAAAACGTGTCTGCATAA 57.005 34.783 0.00 0.00 46.71 1.90
669 1034 7.115805 CACTAAAACGTGTCTGCATAAGTAGAA 59.884 37.037 0.00 0.00 38.25 2.10
700 1070 5.897377 AACAAATAATCAGAAACGGAGGG 57.103 39.130 0.00 0.00 0.00 4.30
703 1073 2.981859 TAATCAGAAACGGAGGGAGC 57.018 50.000 0.00 0.00 0.00 4.70
709 1079 0.458025 GAAACGGAGGGAGCACGTAG 60.458 60.000 0.00 0.00 40.31 3.51
713 1083 0.813184 CGGAGGGAGCACGTAGTAAA 59.187 55.000 0.00 0.00 41.61 2.01
844 2210 0.324943 AGTACAGCCACATGTCCACC 59.675 55.000 0.00 0.00 34.56 4.61
910 2277 0.319727 ACGACGATAAAACGCCCACA 60.320 50.000 0.00 0.00 36.70 4.17
1007 2374 4.276926 CCTCTGCAAGAAAACAAGTAAGCT 59.723 41.667 0.00 0.00 46.34 3.74
1009 2376 5.821204 TCTGCAAGAAAACAAGTAAGCTTC 58.179 37.500 0.00 0.00 42.31 3.86
1015 2382 5.685728 AGAAAACAAGTAAGCTTCTCCAGT 58.314 37.500 0.00 0.00 31.49 4.00
1024 2391 6.014012 AGTAAGCTTCTCCAGTTCTACTCTT 58.986 40.000 0.00 0.00 0.00 2.85
1028 2395 8.596781 AAGCTTCTCCAGTTCTACTCTTATTA 57.403 34.615 0.00 0.00 0.00 0.98
1029 2396 8.596781 AGCTTCTCCAGTTCTACTCTTATTAA 57.403 34.615 0.00 0.00 0.00 1.40
1030 2397 8.471609 AGCTTCTCCAGTTCTACTCTTATTAAC 58.528 37.037 0.00 0.00 0.00 2.01
1212 2638 0.609957 TGGCAAGCACCAGAATCCTG 60.610 55.000 0.00 0.00 40.09 3.86
1225 2651 2.028020 AGAATCCTGGACTGACGAAACC 60.028 50.000 0.00 0.00 0.00 3.27
1240 2666 2.794910 CGAAACCGATACGAATGCATCT 59.205 45.455 0.00 0.00 0.00 2.90
1327 2760 1.428448 TCAGATCAAGTTCAACGCCG 58.572 50.000 0.00 0.00 0.00 6.46
1448 2881 1.592669 CCGGTGAGACGATGGATGC 60.593 63.158 0.00 0.00 35.47 3.91
1453 2886 1.863454 GTGAGACGATGGATGCATGAC 59.137 52.381 2.46 0.00 0.00 3.06
1750 3185 4.585526 CCGCCGCGCCAGAGATAA 62.586 66.667 7.42 0.00 0.00 1.75
2043 3479 1.539827 CCTTACCGGAACTTTGGCAAG 59.460 52.381 9.46 0.00 33.15 4.01
2064 3500 1.202371 TCGATCCAACGCTGTACATCC 60.202 52.381 0.00 0.00 0.00 3.51
2067 3503 1.803334 TCCAACGCTGTACATCCAAC 58.197 50.000 0.00 0.00 0.00 3.77
2074 3510 3.009723 CGCTGTACATCCAACCATTTCT 58.990 45.455 0.00 0.00 0.00 2.52
2077 3513 5.296780 CGCTGTACATCCAACCATTTCTAAT 59.703 40.000 0.00 0.00 0.00 1.73
2134 3570 9.252962 AGTAAACGATTTAAGTATTACATCCGG 57.747 33.333 0.00 0.00 34.99 5.14
2138 3574 7.495055 ACGATTTAAGTATTACATCCGGTCTT 58.505 34.615 0.00 0.00 34.99 3.01
2152 3588 8.246430 ACATCCGGTCTTTCATAACTAAGATA 57.754 34.615 0.00 0.00 33.36 1.98
2157 3593 7.222224 CCGGTCTTTCATAACTAAGATACACAC 59.778 40.741 0.00 0.00 33.36 3.82
2180 3616 9.912634 ACACAAGTGAATGGTAAATTTAATCAG 57.087 29.630 7.28 0.00 0.00 2.90
2181 3617 8.863049 CACAAGTGAATGGTAAATTTAATCAGC 58.137 33.333 0.00 0.00 0.00 4.26
2199 5227 1.634702 GCACTCGCTTTCTCTAGGTG 58.365 55.000 0.00 0.00 34.30 4.00
2201 5229 2.869897 CACTCGCTTTCTCTAGGTGAC 58.130 52.381 0.00 0.00 0.00 3.67
2289 5317 5.255397 TCAACTACCCCATCAATTTGACT 57.745 39.130 0.15 0.00 0.00 3.41
2296 5324 4.640201 ACCCCATCAATTTGACTATCAACG 59.360 41.667 0.15 0.00 35.89 4.10
2301 5329 6.527722 CCATCAATTTGACTATCAACGTTTGG 59.472 38.462 0.00 0.00 35.89 3.28
2319 5347 5.472148 GTTTGGATGCTCAATCATGACAAA 58.528 37.500 0.00 0.00 36.98 2.83
2408 5436 0.248012 TTCGAAGTAGCGGCCAATGA 59.752 50.000 2.24 0.00 0.00 2.57
2440 5468 2.263895 TAATGGCCACACTACCTCCT 57.736 50.000 8.16 0.00 0.00 3.69
2441 5469 0.912486 AATGGCCACACTACCTCCTC 59.088 55.000 8.16 0.00 0.00 3.71
2446 5474 1.071699 GCCACACTACCTCCTCAAACA 59.928 52.381 0.00 0.00 0.00 2.83
2460 5488 6.151648 CCTCCTCAAACAAAGCTATGAATCAA 59.848 38.462 0.00 0.00 0.00 2.57
2646 5674 7.901029 TCTAGGATATTTCTACCTTGCATGAG 58.099 38.462 0.00 0.00 35.52 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 4.935352 CAAAATTTGTTGGAGAGTCCCA 57.065 40.909 0.00 0.00 35.03 4.37
99 108 1.201429 AGGGTTAGTGGGCACAGAGG 61.201 60.000 0.00 0.00 0.00 3.69
108 117 2.746277 GGCGTGCAGGGTTAGTGG 60.746 66.667 8.72 0.00 0.00 4.00
120 129 1.405121 GGGTAAGGTGTAGAAGGCGTG 60.405 57.143 0.00 0.00 0.00 5.34
121 130 0.900421 GGGTAAGGTGTAGAAGGCGT 59.100 55.000 0.00 0.00 0.00 5.68
122 131 1.134788 CAGGGTAAGGTGTAGAAGGCG 60.135 57.143 0.00 0.00 0.00 5.52
123 132 1.907255 ACAGGGTAAGGTGTAGAAGGC 59.093 52.381 0.00 0.00 0.00 4.35
124 133 2.500504 GGACAGGGTAAGGTGTAGAAGG 59.499 54.545 0.00 0.00 0.00 3.46
125 134 2.500504 GGGACAGGGTAAGGTGTAGAAG 59.499 54.545 0.00 0.00 0.00 2.85
126 135 2.543635 GGGACAGGGTAAGGTGTAGAA 58.456 52.381 0.00 0.00 0.00 2.10
127 136 1.273438 GGGGACAGGGTAAGGTGTAGA 60.273 57.143 0.00 0.00 0.00 2.59
131 140 2.987125 CGGGGACAGGGTAAGGTG 59.013 66.667 0.00 0.00 0.00 4.00
139 148 1.203994 CGTATATAAGGCGGGGACAGG 59.796 57.143 0.00 0.00 0.00 4.00
166 177 3.991773 CTGCATCCACCATTGTCTTTTTG 59.008 43.478 0.00 0.00 0.00 2.44
167 178 3.007182 CCTGCATCCACCATTGTCTTTTT 59.993 43.478 0.00 0.00 0.00 1.94
168 179 2.564062 CCTGCATCCACCATTGTCTTTT 59.436 45.455 0.00 0.00 0.00 2.27
169 180 2.173519 CCTGCATCCACCATTGTCTTT 58.826 47.619 0.00 0.00 0.00 2.52
170 181 1.355381 TCCTGCATCCACCATTGTCTT 59.645 47.619 0.00 0.00 0.00 3.01
171 182 0.994247 TCCTGCATCCACCATTGTCT 59.006 50.000 0.00 0.00 0.00 3.41
172 183 1.747355 CTTCCTGCATCCACCATTGTC 59.253 52.381 0.00 0.00 0.00 3.18
173 184 1.355381 TCTTCCTGCATCCACCATTGT 59.645 47.619 0.00 0.00 0.00 2.71
174 185 2.133281 TCTTCCTGCATCCACCATTG 57.867 50.000 0.00 0.00 0.00 2.82
175 186 2.662866 CATCTTCCTGCATCCACCATT 58.337 47.619 0.00 0.00 0.00 3.16
176 187 1.753141 GCATCTTCCTGCATCCACCAT 60.753 52.381 0.00 0.00 41.87 3.55
177 188 0.394762 GCATCTTCCTGCATCCACCA 60.395 55.000 0.00 0.00 41.87 4.17
178 189 0.106819 AGCATCTTCCTGCATCCACC 60.107 55.000 0.00 0.00 44.77 4.61
179 190 2.492012 CTAGCATCTTCCTGCATCCAC 58.508 52.381 0.00 0.00 44.77 4.02
180 191 1.202734 GCTAGCATCTTCCTGCATCCA 60.203 52.381 10.63 0.00 44.77 3.41
181 192 1.202734 TGCTAGCATCTTCCTGCATCC 60.203 52.381 14.93 0.00 44.77 3.51
182 193 2.251409 TGCTAGCATCTTCCTGCATC 57.749 50.000 14.93 0.00 44.77 3.91
183 194 2.092538 ACTTGCTAGCATCTTCCTGCAT 60.093 45.455 20.13 0.00 44.77 3.96
184 195 1.280133 ACTTGCTAGCATCTTCCTGCA 59.720 47.619 20.13 0.00 44.77 4.41
185 196 2.035530 ACTTGCTAGCATCTTCCTGC 57.964 50.000 20.13 0.00 42.62 4.85
186 197 3.119291 CGTACTTGCTAGCATCTTCCTG 58.881 50.000 20.13 5.73 0.00 3.86
187 198 2.101582 CCGTACTTGCTAGCATCTTCCT 59.898 50.000 20.13 0.11 0.00 3.36
188 199 2.159085 ACCGTACTTGCTAGCATCTTCC 60.159 50.000 20.13 5.12 0.00 3.46
189 200 3.166489 ACCGTACTTGCTAGCATCTTC 57.834 47.619 20.13 9.09 0.00 2.87
190 201 3.611766 AACCGTACTTGCTAGCATCTT 57.388 42.857 20.13 8.33 0.00 2.40
191 202 3.611766 AAACCGTACTTGCTAGCATCT 57.388 42.857 20.13 9.07 0.00 2.90
192 203 4.260253 GCTTAAACCGTACTTGCTAGCATC 60.260 45.833 20.13 8.74 0.00 3.91
193 204 3.621715 GCTTAAACCGTACTTGCTAGCAT 59.378 43.478 20.13 7.21 0.00 3.79
194 205 2.997986 GCTTAAACCGTACTTGCTAGCA 59.002 45.455 14.93 14.93 0.00 3.49
195 206 3.259902 AGCTTAAACCGTACTTGCTAGC 58.740 45.455 8.10 8.10 0.00 3.42
196 207 3.864003 GGAGCTTAAACCGTACTTGCTAG 59.136 47.826 0.00 0.00 0.00 3.42
197 208 3.258872 TGGAGCTTAAACCGTACTTGCTA 59.741 43.478 0.00 0.00 0.00 3.49
198 209 2.038033 TGGAGCTTAAACCGTACTTGCT 59.962 45.455 0.00 0.00 0.00 3.91
199 210 2.419667 TGGAGCTTAAACCGTACTTGC 58.580 47.619 0.00 0.00 0.00 4.01
200 211 3.306166 CGATGGAGCTTAAACCGTACTTG 59.694 47.826 0.00 0.00 0.00 3.16
201 212 3.518590 CGATGGAGCTTAAACCGTACTT 58.481 45.455 0.00 0.00 0.00 2.24
202 213 2.737679 GCGATGGAGCTTAAACCGTACT 60.738 50.000 0.00 0.00 0.00 2.73
203 214 1.591619 GCGATGGAGCTTAAACCGTAC 59.408 52.381 0.00 0.00 0.00 3.67
204 215 1.205179 TGCGATGGAGCTTAAACCGTA 59.795 47.619 0.00 0.00 38.13 4.02
205 216 0.036765 TGCGATGGAGCTTAAACCGT 60.037 50.000 0.00 0.00 38.13 4.83
206 217 1.083489 TTGCGATGGAGCTTAAACCG 58.917 50.000 0.00 0.00 38.13 4.44
207 218 3.569250 TTTTGCGATGGAGCTTAAACC 57.431 42.857 0.00 0.00 38.13 3.27
208 219 3.304293 GCATTTTGCGATGGAGCTTAAAC 59.696 43.478 0.00 0.00 38.13 2.01
209 220 3.510719 GCATTTTGCGATGGAGCTTAAA 58.489 40.909 0.00 0.00 38.13 1.52
210 221 3.149436 GCATTTTGCGATGGAGCTTAA 57.851 42.857 0.00 0.00 38.13 1.85
211 222 2.849880 GCATTTTGCGATGGAGCTTA 57.150 45.000 0.00 0.00 38.13 3.09
212 223 3.727419 GCATTTTGCGATGGAGCTT 57.273 47.368 0.00 0.00 38.13 3.74
222 233 6.414987 GGATAAATCTAAGACACGCATTTTGC 59.585 38.462 0.00 0.00 40.69 3.68
223 234 7.471721 TGGATAAATCTAAGACACGCATTTTG 58.528 34.615 0.00 0.00 0.00 2.44
224 235 7.552687 TCTGGATAAATCTAAGACACGCATTTT 59.447 33.333 0.00 0.00 0.00 1.82
225 236 7.047891 TCTGGATAAATCTAAGACACGCATTT 58.952 34.615 0.00 0.00 0.00 2.32
226 237 6.582636 TCTGGATAAATCTAAGACACGCATT 58.417 36.000 0.00 0.00 0.00 3.56
227 238 6.161855 TCTGGATAAATCTAAGACACGCAT 57.838 37.500 0.00 0.00 0.00 4.73
228 239 5.592104 TCTGGATAAATCTAAGACACGCA 57.408 39.130 0.00 0.00 0.00 5.24
229 240 7.145985 TGTATCTGGATAAATCTAAGACACGC 58.854 38.462 0.00 0.00 0.00 5.34
230 241 8.568794 TCTGTATCTGGATAAATCTAAGACACG 58.431 37.037 0.00 0.00 0.00 4.49
231 242 9.906660 CTCTGTATCTGGATAAATCTAAGACAC 57.093 37.037 0.00 0.00 0.00 3.67
232 243 9.083422 CCTCTGTATCTGGATAAATCTAAGACA 57.917 37.037 0.00 0.00 0.00 3.41
233 244 9.084533 ACCTCTGTATCTGGATAAATCTAAGAC 57.915 37.037 0.00 0.00 0.00 3.01
234 245 9.661954 AACCTCTGTATCTGGATAAATCTAAGA 57.338 33.333 0.00 0.00 0.00 2.10
235 246 9.703892 CAACCTCTGTATCTGGATAAATCTAAG 57.296 37.037 0.00 0.00 0.00 2.18
236 247 9.213777 ACAACCTCTGTATCTGGATAAATCTAA 57.786 33.333 0.00 0.00 36.10 2.10
237 248 8.783660 ACAACCTCTGTATCTGGATAAATCTA 57.216 34.615 0.00 0.00 36.10 1.98
238 249 7.682787 ACAACCTCTGTATCTGGATAAATCT 57.317 36.000 0.00 0.00 36.10 2.40
251 262 6.014647 AGGTGTACAAGATACAACCTCTGTA 58.985 40.000 0.00 0.00 44.65 2.74
252 263 4.838986 AGGTGTACAAGATACAACCTCTGT 59.161 41.667 0.00 0.00 42.47 3.41
253 264 5.407407 AGGTGTACAAGATACAACCTCTG 57.593 43.478 0.00 0.00 35.84 3.35
254 265 6.070938 GGTAAGGTGTACAAGATACAACCTCT 60.071 42.308 0.00 0.00 35.84 3.69
255 266 6.070938 AGGTAAGGTGTACAAGATACAACCTC 60.071 42.308 0.00 0.00 35.84 3.85
256 267 5.783875 AGGTAAGGTGTACAAGATACAACCT 59.216 40.000 0.00 2.03 35.84 3.50
257 268 6.046290 AGGTAAGGTGTACAAGATACAACC 57.954 41.667 0.00 0.00 35.84 3.77
258 269 6.932960 ACAAGGTAAGGTGTACAAGATACAAC 59.067 38.462 0.00 0.00 35.48 3.32
259 270 7.015877 AGACAAGGTAAGGTGTACAAGATACAA 59.984 37.037 0.00 0.00 0.00 2.41
260 271 6.495872 AGACAAGGTAAGGTGTACAAGATACA 59.504 38.462 0.00 0.00 0.00 2.29
261 272 6.932947 AGACAAGGTAAGGTGTACAAGATAC 58.067 40.000 0.00 0.92 0.00 2.24
262 273 6.952358 AGAGACAAGGTAAGGTGTACAAGATA 59.048 38.462 0.00 0.00 0.00 1.98
263 274 5.780793 AGAGACAAGGTAAGGTGTACAAGAT 59.219 40.000 0.00 0.00 0.00 2.40
264 275 5.010719 CAGAGACAAGGTAAGGTGTACAAGA 59.989 44.000 0.00 0.00 0.00 3.02
265 276 5.230942 CAGAGACAAGGTAAGGTGTACAAG 58.769 45.833 0.00 0.00 0.00 3.16
266 277 4.502604 GCAGAGACAAGGTAAGGTGTACAA 60.503 45.833 0.00 0.00 0.00 2.41
267 278 3.006537 GCAGAGACAAGGTAAGGTGTACA 59.993 47.826 0.00 0.00 0.00 2.90
268 279 3.006537 TGCAGAGACAAGGTAAGGTGTAC 59.993 47.826 0.00 0.00 0.00 2.90
269 280 3.236047 TGCAGAGACAAGGTAAGGTGTA 58.764 45.455 0.00 0.00 0.00 2.90
270 281 2.047061 TGCAGAGACAAGGTAAGGTGT 58.953 47.619 0.00 0.00 0.00 4.16
271 282 2.839486 TGCAGAGACAAGGTAAGGTG 57.161 50.000 0.00 0.00 0.00 4.00
272 283 3.857157 TTTGCAGAGACAAGGTAAGGT 57.143 42.857 0.00 0.00 0.00 3.50
273 284 4.616835 GCATTTTGCAGAGACAAGGTAAGG 60.617 45.833 0.00 0.00 44.26 2.69
274 285 4.479619 GCATTTTGCAGAGACAAGGTAAG 58.520 43.478 0.00 0.00 44.26 2.34
275 286 4.503741 GCATTTTGCAGAGACAAGGTAA 57.496 40.909 0.00 0.00 44.26 2.85
288 299 8.977505 TGTTTAAATCTAAGACAAGCATTTTGC 58.022 29.630 0.00 0.00 45.46 3.68
293 304 8.680903 CCATCTGTTTAAATCTAAGACAAGCAT 58.319 33.333 0.00 0.00 0.00 3.79
294 305 7.121168 CCCATCTGTTTAAATCTAAGACAAGCA 59.879 37.037 0.00 0.00 0.00 3.91
295 306 7.415653 CCCCATCTGTTTAAATCTAAGACAAGC 60.416 40.741 0.00 0.00 0.00 4.01
296 307 7.611855 ACCCCATCTGTTTAAATCTAAGACAAG 59.388 37.037 0.00 0.00 0.00 3.16
297 308 7.393234 CACCCCATCTGTTTAAATCTAAGACAA 59.607 37.037 0.00 0.00 0.00 3.18
298 309 6.884295 CACCCCATCTGTTTAAATCTAAGACA 59.116 38.462 0.00 0.00 0.00 3.41
299 310 6.884836 ACACCCCATCTGTTTAAATCTAAGAC 59.115 38.462 0.00 0.00 0.00 3.01
300 311 7.027874 ACACCCCATCTGTTTAAATCTAAGA 57.972 36.000 0.00 0.00 0.00 2.10
301 312 7.176690 ACAACACCCCATCTGTTTAAATCTAAG 59.823 37.037 0.00 0.00 29.02 2.18
302 313 7.007723 ACAACACCCCATCTGTTTAAATCTAA 58.992 34.615 0.00 0.00 29.02 2.10
303 314 6.548321 ACAACACCCCATCTGTTTAAATCTA 58.452 36.000 0.00 0.00 29.02 1.98
304 315 5.393866 ACAACACCCCATCTGTTTAAATCT 58.606 37.500 0.00 0.00 29.02 2.40
305 316 5.722021 ACAACACCCCATCTGTTTAAATC 57.278 39.130 0.00 0.00 29.02 2.17
306 317 7.182060 AGATACAACACCCCATCTGTTTAAAT 58.818 34.615 0.00 0.00 29.02 1.40
307 318 6.548321 AGATACAACACCCCATCTGTTTAAA 58.452 36.000 0.00 0.00 29.02 1.52
308 319 6.134535 AGATACAACACCCCATCTGTTTAA 57.865 37.500 0.00 0.00 29.02 1.52
309 320 5.772393 AGATACAACACCCCATCTGTTTA 57.228 39.130 0.00 0.00 29.02 2.01
310 321 4.657814 AGATACAACACCCCATCTGTTT 57.342 40.909 0.00 0.00 29.02 2.83
311 322 4.289672 AGAAGATACAACACCCCATCTGTT 59.710 41.667 0.00 0.00 31.80 3.16
312 323 3.846588 AGAAGATACAACACCCCATCTGT 59.153 43.478 0.00 0.00 0.00 3.41
313 324 4.494091 AGAAGATACAACACCCCATCTG 57.506 45.455 0.00 0.00 0.00 2.90
314 325 6.415573 GTTTAGAAGATACAACACCCCATCT 58.584 40.000 0.00 0.00 0.00 2.90
315 326 5.589050 GGTTTAGAAGATACAACACCCCATC 59.411 44.000 0.00 0.00 0.00 3.51
316 327 5.253096 AGGTTTAGAAGATACAACACCCCAT 59.747 40.000 0.00 0.00 0.00 4.00
317 328 4.600111 AGGTTTAGAAGATACAACACCCCA 59.400 41.667 0.00 0.00 0.00 4.96
318 329 5.175388 AGGTTTAGAAGATACAACACCCC 57.825 43.478 0.00 0.00 0.00 4.95
319 330 6.596888 GGTAAGGTTTAGAAGATACAACACCC 59.403 42.308 0.00 0.00 0.00 4.61
320 331 6.596888 GGGTAAGGTTTAGAAGATACAACACC 59.403 42.308 0.00 0.00 0.00 4.16
321 332 7.333672 CAGGGTAAGGTTTAGAAGATACAACAC 59.666 40.741 0.00 0.00 0.00 3.32
322 333 7.016858 ACAGGGTAAGGTTTAGAAGATACAACA 59.983 37.037 0.00 0.00 0.00 3.33
323 334 7.392418 ACAGGGTAAGGTTTAGAAGATACAAC 58.608 38.462 0.00 0.00 0.00 3.32
324 335 7.310858 GGACAGGGTAAGGTTTAGAAGATACAA 60.311 40.741 0.00 0.00 0.00 2.41
325 336 6.155737 GGACAGGGTAAGGTTTAGAAGATACA 59.844 42.308 0.00 0.00 0.00 2.29
326 337 6.383436 AGGACAGGGTAAGGTTTAGAAGATAC 59.617 42.308 0.00 0.00 0.00 2.24
327 338 6.509386 AGGACAGGGTAAGGTTTAGAAGATA 58.491 40.000 0.00 0.00 0.00 1.98
328 339 5.351405 AGGACAGGGTAAGGTTTAGAAGAT 58.649 41.667 0.00 0.00 0.00 2.40
329 340 4.759953 AGGACAGGGTAAGGTTTAGAAGA 58.240 43.478 0.00 0.00 0.00 2.87
330 341 5.246307 CAAGGACAGGGTAAGGTTTAGAAG 58.754 45.833 0.00 0.00 0.00 2.85
331 342 4.506095 GCAAGGACAGGGTAAGGTTTAGAA 60.506 45.833 0.00 0.00 0.00 2.10
332 343 3.008704 GCAAGGACAGGGTAAGGTTTAGA 59.991 47.826 0.00 0.00 0.00 2.10
333 344 3.244770 TGCAAGGACAGGGTAAGGTTTAG 60.245 47.826 0.00 0.00 0.00 1.85
334 345 2.712087 TGCAAGGACAGGGTAAGGTTTA 59.288 45.455 0.00 0.00 0.00 2.01
335 346 1.497286 TGCAAGGACAGGGTAAGGTTT 59.503 47.619 0.00 0.00 0.00 3.27
336 347 1.145571 TGCAAGGACAGGGTAAGGTT 58.854 50.000 0.00 0.00 0.00 3.50
337 348 1.372501 ATGCAAGGACAGGGTAAGGT 58.627 50.000 0.00 0.00 0.00 3.50
338 349 2.094675 CAATGCAAGGACAGGGTAAGG 58.905 52.381 0.00 0.00 0.00 2.69
339 350 1.474077 GCAATGCAAGGACAGGGTAAG 59.526 52.381 0.00 0.00 0.00 2.34
340 351 1.544724 GCAATGCAAGGACAGGGTAA 58.455 50.000 0.00 0.00 0.00 2.85
341 352 0.323360 GGCAATGCAAGGACAGGGTA 60.323 55.000 7.79 0.00 0.00 3.69
342 353 1.607467 GGCAATGCAAGGACAGGGT 60.607 57.895 7.79 0.00 0.00 4.34
343 354 0.901580 AAGGCAATGCAAGGACAGGG 60.902 55.000 7.79 0.00 0.00 4.45
344 355 0.529378 GAAGGCAATGCAAGGACAGG 59.471 55.000 7.79 0.00 0.00 4.00
345 356 1.201647 CAGAAGGCAATGCAAGGACAG 59.798 52.381 7.79 0.00 0.00 3.51
346 357 1.250328 CAGAAGGCAATGCAAGGACA 58.750 50.000 7.79 0.00 0.00 4.02
347 358 1.251251 ACAGAAGGCAATGCAAGGAC 58.749 50.000 7.79 0.00 0.00 3.85
348 359 2.436417 GTACAGAAGGCAATGCAAGGA 58.564 47.619 7.79 0.00 0.00 3.36
349 360 1.131126 CGTACAGAAGGCAATGCAAGG 59.869 52.381 7.79 0.00 0.00 3.61
350 361 2.076100 TCGTACAGAAGGCAATGCAAG 58.924 47.619 7.79 0.00 0.00 4.01
351 362 2.177394 TCGTACAGAAGGCAATGCAA 57.823 45.000 7.79 0.00 0.00 4.08
352 363 2.177394 TTCGTACAGAAGGCAATGCA 57.823 45.000 7.79 0.00 34.26 3.96
353 364 3.552604 TTTTCGTACAGAAGGCAATGC 57.447 42.857 0.00 0.00 40.40 3.56
371 382 4.508662 TCGACCATTGCCTTTTTGTTTTT 58.491 34.783 0.00 0.00 0.00 1.94
372 383 4.130286 TCGACCATTGCCTTTTTGTTTT 57.870 36.364 0.00 0.00 0.00 2.43
373 384 3.810310 TCGACCATTGCCTTTTTGTTT 57.190 38.095 0.00 0.00 0.00 2.83
374 385 3.069443 ACATCGACCATTGCCTTTTTGTT 59.931 39.130 0.00 0.00 0.00 2.83
375 386 2.627699 ACATCGACCATTGCCTTTTTGT 59.372 40.909 0.00 0.00 0.00 2.83
376 387 3.302365 ACATCGACCATTGCCTTTTTG 57.698 42.857 0.00 0.00 0.00 2.44
377 388 3.069443 ACAACATCGACCATTGCCTTTTT 59.931 39.130 5.32 0.00 0.00 1.94
378 389 2.627699 ACAACATCGACCATTGCCTTTT 59.372 40.909 5.32 0.00 0.00 2.27
379 390 2.238521 ACAACATCGACCATTGCCTTT 58.761 42.857 5.32 0.00 0.00 3.11
380 391 1.909700 ACAACATCGACCATTGCCTT 58.090 45.000 5.32 0.00 0.00 4.35
381 392 2.779755 TACAACATCGACCATTGCCT 57.220 45.000 5.32 0.00 0.00 4.75
382 393 3.206150 AGATACAACATCGACCATTGCC 58.794 45.455 5.32 0.00 0.00 4.52
383 394 4.572389 AGAAGATACAACATCGACCATTGC 59.428 41.667 5.32 0.00 0.00 3.56
384 395 6.756542 TGTAGAAGATACAACATCGACCATTG 59.243 38.462 0.00 0.00 0.00 2.82
385 396 6.757010 GTGTAGAAGATACAACATCGACCATT 59.243 38.462 0.00 0.00 0.00 3.16
386 397 6.273825 GTGTAGAAGATACAACATCGACCAT 58.726 40.000 0.00 0.00 0.00 3.55
387 398 5.393787 GGTGTAGAAGATACAACATCGACCA 60.394 44.000 0.00 0.00 35.35 4.02
388 399 5.041940 GGTGTAGAAGATACAACATCGACC 58.958 45.833 0.00 0.00 35.35 4.79
389 400 5.892568 AGGTGTAGAAGATACAACATCGAC 58.107 41.667 5.91 0.00 37.59 4.20
390 401 6.525578 AAGGTGTAGAAGATACAACATCGA 57.474 37.500 5.91 0.00 37.59 3.59
391 402 6.696148 GGTAAGGTGTAGAAGATACAACATCG 59.304 42.308 5.91 0.00 37.59 3.84
392 403 6.985059 GGGTAAGGTGTAGAAGATACAACATC 59.015 42.308 5.91 0.00 37.59 3.06
393 404 6.672657 AGGGTAAGGTGTAGAAGATACAACAT 59.327 38.462 5.91 0.00 37.59 2.71
394 405 6.021030 AGGGTAAGGTGTAGAAGATACAACA 58.979 40.000 5.91 0.00 37.59 3.33
395 406 6.070938 ACAGGGTAAGGTGTAGAAGATACAAC 60.071 42.308 0.00 0.00 35.48 3.32
396 407 6.021030 ACAGGGTAAGGTGTAGAAGATACAA 58.979 40.000 0.00 0.00 0.00 2.41
397 408 5.586877 ACAGGGTAAGGTGTAGAAGATACA 58.413 41.667 0.00 0.00 0.00 2.29
398 409 5.068855 GGACAGGGTAAGGTGTAGAAGATAC 59.931 48.000 0.00 0.00 0.00 2.24
399 410 5.206587 GGACAGGGTAAGGTGTAGAAGATA 58.793 45.833 0.00 0.00 0.00 1.98
400 411 4.031611 GGACAGGGTAAGGTGTAGAAGAT 58.968 47.826 0.00 0.00 0.00 2.40
401 412 3.438183 GGACAGGGTAAGGTGTAGAAGA 58.562 50.000 0.00 0.00 0.00 2.87
402 413 2.500504 GGGACAGGGTAAGGTGTAGAAG 59.499 54.545 0.00 0.00 0.00 2.85
403 414 2.113052 AGGGACAGGGTAAGGTGTAGAA 59.887 50.000 0.00 0.00 0.00 2.10
404 415 1.720533 AGGGACAGGGTAAGGTGTAGA 59.279 52.381 0.00 0.00 0.00 2.59
405 416 1.831736 CAGGGACAGGGTAAGGTGTAG 59.168 57.143 0.00 0.00 0.00 2.74
406 417 1.946984 CAGGGACAGGGTAAGGTGTA 58.053 55.000 0.00 0.00 0.00 2.90
407 418 1.489560 GCAGGGACAGGGTAAGGTGT 61.490 60.000 0.00 0.00 0.00 4.16
408 419 1.299976 GCAGGGACAGGGTAAGGTG 59.700 63.158 0.00 0.00 0.00 4.00
409 420 0.770557 TTGCAGGGACAGGGTAAGGT 60.771 55.000 0.00 0.00 0.00 3.50
410 421 0.404040 TTTGCAGGGACAGGGTAAGG 59.596 55.000 0.00 0.00 0.00 2.69
411 422 2.286365 TTTTGCAGGGACAGGGTAAG 57.714 50.000 0.00 0.00 0.00 2.34
412 423 2.524306 CATTTTGCAGGGACAGGGTAA 58.476 47.619 0.00 0.00 0.00 2.85
413 424 1.890573 GCATTTTGCAGGGACAGGGTA 60.891 52.381 0.00 0.00 44.26 3.69
414 425 1.187567 GCATTTTGCAGGGACAGGGT 61.188 55.000 0.00 0.00 44.26 4.34
415 426 1.593265 GCATTTTGCAGGGACAGGG 59.407 57.895 0.00 0.00 44.26 4.45
425 436 1.615392 AGGGACAGACAAGCATTTTGC 59.385 47.619 0.00 0.00 45.46 3.68
426 437 2.608752 GCAGGGACAGACAAGCATTTTG 60.609 50.000 0.00 0.00 0.00 2.44
427 438 1.615392 GCAGGGACAGACAAGCATTTT 59.385 47.619 0.00 0.00 0.00 1.82
428 439 1.251251 GCAGGGACAGACAAGCATTT 58.749 50.000 0.00 0.00 0.00 2.32
429 440 0.610232 GGCAGGGACAGACAAGCATT 60.610 55.000 0.00 0.00 0.00 3.56
430 441 1.001641 GGCAGGGACAGACAAGCAT 60.002 57.895 0.00 0.00 0.00 3.79
431 442 1.708993 AAGGCAGGGACAGACAAGCA 61.709 55.000 0.00 0.00 0.00 3.91
432 443 0.957888 GAAGGCAGGGACAGACAAGC 60.958 60.000 0.00 0.00 0.00 4.01
433 444 0.689623 AGAAGGCAGGGACAGACAAG 59.310 55.000 0.00 0.00 0.00 3.16
434 445 2.024176 TAGAAGGCAGGGACAGACAA 57.976 50.000 0.00 0.00 0.00 3.18
435 446 2.254152 ATAGAAGGCAGGGACAGACA 57.746 50.000 0.00 0.00 0.00 3.41
436 447 2.034812 CGTATAGAAGGCAGGGACAGAC 59.965 54.545 0.00 0.00 0.00 3.51
437 448 2.092049 TCGTATAGAAGGCAGGGACAGA 60.092 50.000 0.00 0.00 0.00 3.41
438 449 2.307768 TCGTATAGAAGGCAGGGACAG 58.692 52.381 0.00 0.00 0.00 3.51
439 450 2.447408 TCGTATAGAAGGCAGGGACA 57.553 50.000 0.00 0.00 0.00 4.02
449 460 7.499321 TGCCTTTTTGTTTCTTCGTATAGAA 57.501 32.000 0.00 0.00 37.31 2.10
450 461 7.499321 TTGCCTTTTTGTTTCTTCGTATAGA 57.501 32.000 0.00 0.00 0.00 1.98
451 462 9.490663 CTATTGCCTTTTTGTTTCTTCGTATAG 57.509 33.333 0.00 0.00 0.00 1.31
452 463 9.005777 ACTATTGCCTTTTTGTTTCTTCGTATA 57.994 29.630 0.00 0.00 0.00 1.47
453 464 7.882179 ACTATTGCCTTTTTGTTTCTTCGTAT 58.118 30.769 0.00 0.00 0.00 3.06
454 465 7.266922 ACTATTGCCTTTTTGTTTCTTCGTA 57.733 32.000 0.00 0.00 0.00 3.43
455 466 6.144078 ACTATTGCCTTTTTGTTTCTTCGT 57.856 33.333 0.00 0.00 0.00 3.85
456 467 7.581476 TCTACTATTGCCTTTTTGTTTCTTCG 58.419 34.615 0.00 0.00 0.00 3.79
457 468 9.346725 CATCTACTATTGCCTTTTTGTTTCTTC 57.653 33.333 0.00 0.00 0.00 2.87
458 469 7.814587 GCATCTACTATTGCCTTTTTGTTTCTT 59.185 33.333 0.00 0.00 32.66 2.52
459 470 7.039784 TGCATCTACTATTGCCTTTTTGTTTCT 60.040 33.333 0.00 0.00 38.08 2.52
460 471 7.090173 TGCATCTACTATTGCCTTTTTGTTTC 58.910 34.615 0.00 0.00 38.08 2.78
461 472 6.991938 TGCATCTACTATTGCCTTTTTGTTT 58.008 32.000 0.00 0.00 38.08 2.83
462 473 6.434028 TCTGCATCTACTATTGCCTTTTTGTT 59.566 34.615 0.00 0.00 38.08 2.83
463 474 5.945784 TCTGCATCTACTATTGCCTTTTTGT 59.054 36.000 0.00 0.00 38.08 2.83
464 475 6.441093 TCTGCATCTACTATTGCCTTTTTG 57.559 37.500 0.00 0.00 38.08 2.44
476 487 4.100653 TGCTAGCATCTTTCTGCATCTACT 59.899 41.667 14.93 0.00 44.77 2.57
479 490 3.555527 TGCTAGCATCTTTCTGCATCT 57.444 42.857 14.93 0.00 44.77 2.90
505 516 7.290813 AGATTTTTGGGATGAGGGTAATACTC 58.709 38.462 0.00 0.00 35.55 2.59
561 917 9.429359 AGATTTGTCTAGATGTTTCAGTGTTAG 57.571 33.333 0.00 0.00 0.00 2.34
564 920 9.209175 GTTAGATTTGTCTAGATGTTTCAGTGT 57.791 33.333 0.00 0.00 0.00 3.55
586 943 5.174395 CAGGTGATTTGAGACAGAGGTTAG 58.826 45.833 0.00 0.00 0.00 2.34
593 950 6.226787 ACTTAAGACAGGTGATTTGAGACAG 58.773 40.000 10.09 0.00 0.00 3.51
688 1058 1.738099 CGTGCTCCCTCCGTTTCTG 60.738 63.158 0.00 0.00 0.00 3.02
700 1070 3.925299 GGTTCTCCTTTTACTACGTGCTC 59.075 47.826 0.00 0.00 0.00 4.26
703 1073 6.599437 CAAATGGTTCTCCTTTTACTACGTG 58.401 40.000 0.00 0.00 38.48 4.49
709 1079 4.023536 TCACGCAAATGGTTCTCCTTTTAC 60.024 41.667 0.00 0.00 38.48 2.01
710 1080 4.138290 TCACGCAAATGGTTCTCCTTTTA 58.862 39.130 0.00 0.00 38.48 1.52
713 1083 2.270352 TCACGCAAATGGTTCTCCTT 57.730 45.000 0.00 0.00 34.23 3.36
844 2210 0.765510 GGTAGGTGGGAATAGCAGGG 59.234 60.000 0.00 0.00 0.00 4.45
910 2277 3.776969 TGTTATGGCAGAGATGGAAGAGT 59.223 43.478 0.00 0.00 0.00 3.24
953 2320 7.228308 CAGATGAAAGAGAAACAAAGAGGAAGT 59.772 37.037 0.00 0.00 0.00 3.01
1052 2473 7.798516 GCGAAATTCGATCAAAAGCTGAATATA 59.201 33.333 20.38 0.00 43.74 0.86
1054 2475 5.965334 GCGAAATTCGATCAAAAGCTGAATA 59.035 36.000 20.38 0.00 43.74 1.75
1056 2477 4.083324 AGCGAAATTCGATCAAAAGCTGAA 60.083 37.500 20.38 0.00 43.74 3.02
1212 2638 1.131126 TCGTATCGGTTTCGTCAGTCC 59.869 52.381 0.00 0.00 37.69 3.85
1221 2647 5.560966 AAAAGATGCATTCGTATCGGTTT 57.439 34.783 0.00 0.00 39.09 3.27
1253 2679 5.421203 CACGTTGAAGAACTTACTTTCGTC 58.579 41.667 0.00 0.00 35.33 4.20
1327 2760 2.467826 CGTCGAGGTAGACCCCGAC 61.468 68.421 21.81 21.81 45.60 4.79
1750 3185 0.179094 TTGCCTTCTGTCACGAACGT 60.179 50.000 0.00 0.00 0.00 3.99
1922 3357 2.905415 AAAGAATCATGGTGCCCTCA 57.095 45.000 0.00 0.00 0.00 3.86
1941 3376 4.499019 GCAGGTAAGCAGCACTTGTAAAAA 60.499 41.667 0.00 0.00 39.58 1.94
1942 3377 3.004315 GCAGGTAAGCAGCACTTGTAAAA 59.996 43.478 0.00 0.00 39.58 1.52
1943 3378 2.552315 GCAGGTAAGCAGCACTTGTAAA 59.448 45.455 0.00 0.00 39.58 2.01
1944 3379 2.151202 GCAGGTAAGCAGCACTTGTAA 58.849 47.619 0.00 0.00 39.58 2.41
1945 3380 1.347707 AGCAGGTAAGCAGCACTTGTA 59.652 47.619 0.00 0.00 39.58 2.41
2032 3468 2.270352 TGGATCGACTTGCCAAAGTT 57.730 45.000 0.00 0.00 46.84 2.66
2043 3479 1.852895 GATGTACAGCGTTGGATCGAC 59.147 52.381 3.74 0.00 0.00 4.20
2108 3544 9.252962 CCGGATGTAATACTTAAATCGTTTACT 57.747 33.333 0.00 0.00 31.78 2.24
2109 3545 9.034544 ACCGGATGTAATACTTAAATCGTTTAC 57.965 33.333 9.46 0.00 31.78 2.01
2110 3546 9.248291 GACCGGATGTAATACTTAAATCGTTTA 57.752 33.333 9.46 0.00 31.78 2.01
2111 3547 7.983484 AGACCGGATGTAATACTTAAATCGTTT 59.017 33.333 9.46 0.00 31.78 3.60
2114 3550 7.941795 AAGACCGGATGTAATACTTAAATCG 57.058 36.000 9.46 0.00 31.78 3.34
2131 3567 7.222224 GTGTGTATCTTAGTTATGAAAGACCGG 59.778 40.741 0.00 0.00 34.70 5.28
2132 3568 7.758076 TGTGTGTATCTTAGTTATGAAAGACCG 59.242 37.037 0.00 0.00 34.70 4.79
2138 3574 9.990360 TTCACTTGTGTGTATCTTAGTTATGAA 57.010 29.630 0.46 0.00 44.14 2.57
2152 3588 9.691362 GATTAAATTTACCATTCACTTGTGTGT 57.309 29.630 0.00 0.00 44.14 3.72
2157 3593 8.863049 GTGCTGATTAAATTTACCATTCACTTG 58.137 33.333 0.00 0.00 0.00 3.16
2160 3596 7.429340 CGAGTGCTGATTAAATTTACCATTCAC 59.571 37.037 0.00 9.59 0.00 3.18
2161 3597 7.471721 CGAGTGCTGATTAAATTTACCATTCA 58.528 34.615 0.00 0.00 0.00 2.57
2162 3598 6.414987 GCGAGTGCTGATTAAATTTACCATTC 59.585 38.462 0.00 0.00 38.39 2.67
2165 3601 5.229921 GCGAGTGCTGATTAAATTTACCA 57.770 39.130 0.00 0.00 38.39 3.25
2180 3616 1.202582 TCACCTAGAGAAAGCGAGTGC 59.797 52.381 0.00 0.00 43.24 4.40
2181 3617 2.729467 CGTCACCTAGAGAAAGCGAGTG 60.729 54.545 0.00 0.00 0.00 3.51
2289 5317 4.940654 TGATTGAGCATCCAAACGTTGATA 59.059 37.500 0.00 0.00 0.00 2.15
2296 5324 4.707030 TGTCATGATTGAGCATCCAAAC 57.293 40.909 0.00 0.00 30.85 2.93
2349 5377 2.332063 AGGTGACTCATTATTGCCCG 57.668 50.000 0.00 0.00 32.90 6.13
2408 5436 4.771577 TGTGGCCATTAAAGTCAATGATGT 59.228 37.500 9.72 0.00 38.01 3.06
2440 5468 6.642131 GCACTTTGATTCATAGCTTTGTTTGA 59.358 34.615 4.00 0.00 0.00 2.69
2441 5469 6.399249 CGCACTTTGATTCATAGCTTTGTTTG 60.399 38.462 4.00 0.00 0.00 2.93
2446 5474 3.428045 GGCGCACTTTGATTCATAGCTTT 60.428 43.478 10.83 0.00 0.00 3.51
2460 5488 0.244994 CTCTACAGAGTGGCGCACTT 59.755 55.000 10.83 0.00 45.44 3.16
2646 5674 1.227674 CGCCCTTCCCATACTGCTC 60.228 63.158 0.00 0.00 0.00 4.26
2683 5711 6.582636 AGTTGCGATGATTAGGATAAACTCA 58.417 36.000 0.00 0.00 0.00 3.41
2747 5775 6.238842 GCGGTAAGGATACAACAGTATAGACA 60.239 42.308 0.00 0.00 41.41 3.41
2824 5852 2.437281 CCTCCATGCTGGACAACTAGAT 59.563 50.000 0.00 0.00 42.67 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.