Multiple sequence alignment - TraesCS5A01G146300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G146300 chr5A 100.000 5496 0 0 1 5496 322611413 322616908 0.000000e+00 10150.0
1 TraesCS5A01G146300 chr5A 99.020 102 1 0 3754 3855 575329555 575329656 3.380000e-42 183.0
2 TraesCS5A01G146300 chr5A 97.143 105 3 0 3754 3858 596485077 596484973 1.570000e-40 178.0
3 TraesCS5A01G146300 chr5A 100.000 35 0 0 3712 3746 322615053 322615087 1.280000e-06 65.8
4 TraesCS5A01G146300 chr5A 100.000 35 0 0 3641 3675 322615124 322615158 1.280000e-06 65.8
5 TraesCS5A01G146300 chr5D 94.720 1856 75 12 1857 3691 232620923 232619070 0.000000e+00 2863.0
6 TraesCS5A01G146300 chr5D 89.802 1618 89 35 126 1699 232622542 232620957 0.000000e+00 2004.0
7 TraesCS5A01G146300 chr5D 94.633 1062 41 10 3898 4951 232619008 232617955 0.000000e+00 1631.0
8 TraesCS5A01G146300 chr5D 87.500 120 12 2 4187 4306 507378679 507378795 9.600000e-28 135.0
9 TraesCS5A01G146300 chr5B 96.627 1245 42 0 2347 3591 272193375 272194619 0.000000e+00 2067.0
10 TraesCS5A01G146300 chr5B 91.634 1530 69 27 525 2047 272191628 272193105 0.000000e+00 2061.0
11 TraesCS5A01G146300 chr5B 94.712 1059 52 1 3898 4952 272194879 272195937 0.000000e+00 1642.0
12 TraesCS5A01G146300 chr5B 86.496 585 37 16 4951 5495 272195967 272196549 6.090000e-169 604.0
13 TraesCS5A01G146300 chr5B 94.231 312 17 1 113 423 272191055 272191366 4.980000e-130 475.0
14 TraesCS5A01G146300 chr5B 94.924 197 10 0 1996 2192 272193091 272193287 5.350000e-80 309.0
15 TraesCS5A01G146300 chr5B 92.233 103 8 0 422 524 272191470 272191572 4.440000e-31 147.0
16 TraesCS5A01G146300 chr5B 87.500 120 12 2 4187 4306 637389059 637389175 9.600000e-28 135.0
17 TraesCS5A01G146300 chr5B 88.462 78 8 1 2227 2304 272193293 272193369 5.860000e-15 93.5
18 TraesCS5A01G146300 chr5B 92.308 65 3 1 3623 3687 272194724 272194786 2.110000e-14 91.6
19 TraesCS5A01G146300 chr5B 94.286 35 2 0 530 564 54346639 54346673 3.000000e-03 54.7
20 TraesCS5A01G146300 chr6A 99.038 104 1 0 3754 3857 321275459 321275356 2.610000e-43 187.0
21 TraesCS5A01G146300 chr6A 98.113 106 1 1 3754 3858 540825236 540825131 3.380000e-42 183.0
22 TraesCS5A01G146300 chr6A 99.020 102 1 0 3754 3855 594981229 594981128 3.380000e-42 183.0
23 TraesCS5A01G146300 chr6A 95.455 110 4 1 3754 3862 600702209 600702100 2.040000e-39 174.0
24 TraesCS5A01G146300 chr6A 93.860 114 6 1 1 113 2932274 2932387 2.630000e-38 171.0
25 TraesCS5A01G146300 chr4B 99.020 102 1 0 3754 3855 139519606 139519505 3.380000e-42 183.0
26 TraesCS5A01G146300 chr4B 93.860 114 6 1 1 113 364664474 364664587 2.630000e-38 171.0
27 TraesCS5A01G146300 chr4A 98.039 102 2 0 3754 3855 589502840 589502941 1.570000e-40 178.0
28 TraesCS5A01G146300 chr4A 93.860 114 6 1 1 113 666265429 666265542 2.630000e-38 171.0
29 TraesCS5A01G146300 chr4A 96.970 33 0 1 529 560 668935522 668935554 3.000000e-03 54.7
30 TraesCS5A01G146300 chr2A 94.690 113 5 1 1 113 583255818 583255707 2.040000e-39 174.0
31 TraesCS5A01G146300 chr2B 91.473 129 6 5 3754 3878 651361780 651361653 7.320000e-39 172.0
32 TraesCS5A01G146300 chr2B 96.875 32 0 1 530 560 286515344 286515313 1.000000e-02 52.8
33 TraesCS5A01G146300 chr1B 93.860 114 6 1 1 113 361507289 361507402 2.630000e-38 171.0
34 TraesCS5A01G146300 chrUn 93.043 115 8 0 1 115 36198259 36198373 9.470000e-38 169.0
35 TraesCS5A01G146300 chr3B 92.373 118 9 0 1 118 790191848 790191731 9.470000e-38 169.0
36 TraesCS5A01G146300 chr6B 92.982 114 8 0 1 114 71280962 71281075 3.410000e-37 167.0
37 TraesCS5A01G146300 chr6B 96.774 31 1 0 530 560 6881018 6880988 1.000000e-02 52.8
38 TraesCS5A01G146300 chr3A 93.043 115 7 1 1 114 41357483 41357369 3.410000e-37 167.0
39 TraesCS5A01G146300 chr7A 87.500 120 12 2 4187 4306 138661418 138661534 9.600000e-28 135.0
40 TraesCS5A01G146300 chr7D 82.569 109 17 2 3954 4061 99952918 99952811 1.630000e-15 95.3
41 TraesCS5A01G146300 chr7B 81.651 109 18 2 3954 4061 55341222 55341115 7.580000e-14 89.8
42 TraesCS5A01G146300 chr3D 100.000 28 0 0 530 557 548714217 548714244 1.000000e-02 52.8
43 TraesCS5A01G146300 chr1D 100.000 28 0 0 530 557 220422057 220422084 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G146300 chr5A 322611413 322616908 5495 False 3427.200000 10150 100.000000 1 5496 3 chr5A.!!$F2 5495
1 TraesCS5A01G146300 chr5D 232617955 232622542 4587 True 2166.000000 2863 93.051667 126 4951 3 chr5D.!!$R1 4825
2 TraesCS5A01G146300 chr5B 272191055 272196549 5494 False 832.233333 2067 92.403000 113 5495 9 chr5B.!!$F3 5382

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
93 94 0.250081 GATGCAGAGACCGGGGAATC 60.250 60.000 6.32 0.0 0.00 2.52 F
337 342 1.303643 GACCAGCCTTTGTCCCCTG 60.304 63.158 0.00 0.0 0.00 4.45 F
1413 1591 1.064685 GGTGGTCCTGGGGATAACAAG 60.065 57.143 0.00 0.0 32.73 3.16 F
1758 1948 1.313772 CACCACATTGTTCGGTTCCA 58.686 50.000 0.00 0.0 0.00 3.53 F
3255 3491 0.179166 CGGTCCATCGCATTTTGGTG 60.179 55.000 0.00 0.0 34.48 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1110 1281 0.889306 AGAAACCGACGAGGAAGAGG 59.111 55.000 8.56 0.0 45.00 3.69 R
1741 1931 1.269448 CCTTGGAACCGAACAATGTGG 59.731 52.381 0.00 0.0 0.00 4.17 R
2467 2703 0.320334 TTGGCTGCGAGTTCGAATGA 60.320 50.000 0.00 0.0 43.02 2.57 R
3285 3521 0.969894 AAGGTGACAAGTCTCCCGAG 59.030 55.000 15.53 0.0 42.56 4.63 R
5165 5575 0.107703 CTTGGGCGTGCCAGATCTTA 60.108 55.000 13.76 0.0 37.98 2.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 5.382664 ACTTTTGGAGACCTTTAGAACCA 57.617 39.130 0.00 0.00 0.00 3.67
25 26 5.953571 ACTTTTGGAGACCTTTAGAACCAT 58.046 37.500 0.00 0.00 0.00 3.55
26 27 5.770162 ACTTTTGGAGACCTTTAGAACCATG 59.230 40.000 0.00 0.00 0.00 3.66
27 28 4.993705 TTGGAGACCTTTAGAACCATGT 57.006 40.909 0.00 0.00 0.00 3.21
28 29 4.993705 TGGAGACCTTTAGAACCATGTT 57.006 40.909 0.00 0.00 0.00 2.71
29 30 4.651778 TGGAGACCTTTAGAACCATGTTG 58.348 43.478 0.00 0.00 0.00 3.33
30 31 4.104102 TGGAGACCTTTAGAACCATGTTGT 59.896 41.667 0.00 0.00 0.00 3.32
31 32 4.695928 GGAGACCTTTAGAACCATGTTGTC 59.304 45.833 0.00 0.00 0.00 3.18
32 33 5.304686 AGACCTTTAGAACCATGTTGTCA 57.695 39.130 0.00 0.00 0.00 3.58
33 34 5.063880 AGACCTTTAGAACCATGTTGTCAC 58.936 41.667 0.00 0.00 0.00 3.67
34 35 5.048846 ACCTTTAGAACCATGTTGTCACT 57.951 39.130 0.00 0.00 0.00 3.41
35 36 6.042781 AGACCTTTAGAACCATGTTGTCACTA 59.957 38.462 0.00 0.00 0.00 2.74
36 37 5.995897 ACCTTTAGAACCATGTTGTCACTAC 59.004 40.000 0.00 0.00 0.00 2.73
37 38 6.183361 ACCTTTAGAACCATGTTGTCACTACT 60.183 38.462 0.00 0.00 0.00 2.57
38 39 6.710744 CCTTTAGAACCATGTTGTCACTACTT 59.289 38.462 0.00 0.00 0.00 2.24
39 40 7.228706 CCTTTAGAACCATGTTGTCACTACTTT 59.771 37.037 0.00 0.00 0.00 2.66
40 41 9.268268 CTTTAGAACCATGTTGTCACTACTTTA 57.732 33.333 0.00 0.00 0.00 1.85
41 42 9.787435 TTTAGAACCATGTTGTCACTACTTTAT 57.213 29.630 0.00 0.00 0.00 1.40
42 43 9.787435 TTAGAACCATGTTGTCACTACTTTATT 57.213 29.630 0.00 0.00 0.00 1.40
43 44 8.691661 AGAACCATGTTGTCACTACTTTATTT 57.308 30.769 0.00 0.00 0.00 1.40
44 45 8.567948 AGAACCATGTTGTCACTACTTTATTTG 58.432 33.333 0.00 0.00 0.00 2.32
45 46 7.214467 ACCATGTTGTCACTACTTTATTTGG 57.786 36.000 0.00 0.00 0.00 3.28
46 47 6.092748 CCATGTTGTCACTACTTTATTTGGC 58.907 40.000 0.00 0.00 0.00 4.52
47 48 6.071952 CCATGTTGTCACTACTTTATTTGGCT 60.072 38.462 0.00 0.00 0.00 4.75
48 49 7.120579 CCATGTTGTCACTACTTTATTTGGCTA 59.879 37.037 0.00 0.00 0.00 3.93
49 50 8.511321 CATGTTGTCACTACTTTATTTGGCTAA 58.489 33.333 0.00 0.00 0.00 3.09
50 51 8.630054 TGTTGTCACTACTTTATTTGGCTAAT 57.370 30.769 0.00 0.00 0.00 1.73
51 52 9.727859 TGTTGTCACTACTTTATTTGGCTAATA 57.272 29.630 0.00 0.00 0.00 0.98
58 59 9.067986 ACTACTTTATTTGGCTAATAAGATGGC 57.932 33.333 12.58 0.00 39.29 4.40
59 60 7.290110 ACTTTATTTGGCTAATAAGATGGCC 57.710 36.000 12.58 0.00 39.29 5.36
60 61 5.957842 TTATTTGGCTAATAAGATGGCCG 57.042 39.130 9.55 0.00 46.72 6.13
61 62 3.290948 TTTGGCTAATAAGATGGCCGT 57.709 42.857 0.00 0.00 46.72 5.68
62 63 4.425180 TTTGGCTAATAAGATGGCCGTA 57.575 40.909 0.00 0.00 46.72 4.02
63 64 4.634012 TTGGCTAATAAGATGGCCGTAT 57.366 40.909 0.00 0.00 46.72 3.06
64 65 3.937814 TGGCTAATAAGATGGCCGTATG 58.062 45.455 0.00 0.00 46.72 2.39
65 66 2.678336 GGCTAATAAGATGGCCGTATGC 59.322 50.000 0.00 0.00 35.08 3.14
66 67 3.334691 GCTAATAAGATGGCCGTATGCA 58.665 45.455 0.00 0.00 43.89 3.96
67 68 3.941483 GCTAATAAGATGGCCGTATGCAT 59.059 43.478 3.79 3.79 43.89 3.96
68 69 4.034510 GCTAATAAGATGGCCGTATGCATC 59.965 45.833 0.19 0.00 43.89 3.91
69 70 3.988976 ATAAGATGGCCGTATGCATCT 57.011 42.857 0.19 0.00 43.89 2.90
70 71 2.645838 AAGATGGCCGTATGCATCTT 57.354 45.000 0.19 2.26 43.89 2.40
71 72 2.645838 AGATGGCCGTATGCATCTTT 57.354 45.000 0.19 0.00 43.89 2.52
72 73 2.498167 AGATGGCCGTATGCATCTTTC 58.502 47.619 0.19 0.00 43.89 2.62
73 74 2.105477 AGATGGCCGTATGCATCTTTCT 59.895 45.455 0.19 0.00 43.89 2.52
74 75 1.667236 TGGCCGTATGCATCTTTCTG 58.333 50.000 0.19 0.00 43.89 3.02
75 76 1.209261 TGGCCGTATGCATCTTTCTGA 59.791 47.619 0.19 0.00 43.89 3.27
76 77 2.158769 TGGCCGTATGCATCTTTCTGAT 60.159 45.455 0.19 0.00 43.89 2.90
86 87 2.662006 TCTTTCTGATGCAGAGACCG 57.338 50.000 0.00 0.00 41.75 4.79
87 88 1.205655 TCTTTCTGATGCAGAGACCGG 59.794 52.381 0.00 0.00 41.75 5.28
88 89 0.250234 TTTCTGATGCAGAGACCGGG 59.750 55.000 6.32 0.00 41.75 5.73
89 90 1.617018 TTCTGATGCAGAGACCGGGG 61.617 60.000 6.32 0.00 41.75 5.73
90 91 2.038813 TGATGCAGAGACCGGGGA 59.961 61.111 6.32 0.00 0.00 4.81
91 92 1.612146 TGATGCAGAGACCGGGGAA 60.612 57.895 6.32 0.00 0.00 3.97
92 93 0.982852 TGATGCAGAGACCGGGGAAT 60.983 55.000 6.32 0.00 0.00 3.01
93 94 0.250081 GATGCAGAGACCGGGGAATC 60.250 60.000 6.32 0.00 0.00 2.52
94 95 1.700042 ATGCAGAGACCGGGGAATCC 61.700 60.000 6.32 0.00 0.00 3.01
139 140 9.915629 GATCACTAAGGGAGTACAGTATTATTG 57.084 37.037 0.00 0.00 35.64 1.90
151 152 4.273480 ACAGTATTATTGACGATGCAAGGC 59.727 41.667 0.00 0.00 0.00 4.35
198 200 7.663905 TCCAGAGATTAAATTTTCTGACCGAAA 59.336 33.333 15.95 0.00 39.46 3.46
211 213 5.001232 TCTGACCGAAATAAAAGGAACCAG 58.999 41.667 0.00 0.00 0.00 4.00
337 342 1.303643 GACCAGCCTTTGTCCCCTG 60.304 63.158 0.00 0.00 0.00 4.45
453 564 3.679389 TCCTTGCTCTTCCACATTTCTC 58.321 45.455 0.00 0.00 0.00 2.87
495 606 4.789012 ATTGCACCCTCATACAAAACAG 57.211 40.909 0.00 0.00 0.00 3.16
500 611 5.772672 TGCACCCTCATACAAAACAGTATTT 59.227 36.000 0.00 0.00 32.56 1.40
501 612 6.092748 GCACCCTCATACAAAACAGTATTTG 58.907 40.000 0.00 0.00 44.11 2.32
526 692 6.588373 GGACTATAGCATCCTTCTTCGAAATC 59.412 42.308 0.00 0.00 31.75 2.17
529 695 7.987458 ACTATAGCATCCTTCTTCGAAATCAAA 59.013 33.333 0.00 0.00 0.00 2.69
534 700 6.404074 GCATCCTTCTTCGAAATCAAAGACAT 60.404 38.462 0.00 0.00 31.46 3.06
561 727 7.575499 ATTTTAGGATGGAGGGAGTAATAGG 57.425 40.000 0.00 0.00 0.00 2.57
730 899 2.281539 GGAAAACGAAAAGGGAGGGA 57.718 50.000 0.00 0.00 0.00 4.20
731 900 2.160205 GGAAAACGAAAAGGGAGGGAG 58.840 52.381 0.00 0.00 0.00 4.30
754 923 4.048504 CAATCAAACCAAGAAACCGGAAC 58.951 43.478 9.46 0.00 0.00 3.62
834 1004 1.331399 CGTCCTTTCCTCCTCCTCCC 61.331 65.000 0.00 0.00 0.00 4.30
892 1062 4.205587 GTCTCCTCCATTGCTCATCATTT 58.794 43.478 0.00 0.00 0.00 2.32
954 1125 3.138098 GCAGAGTAGGTAGGTAGGTAGGT 59.862 52.174 0.00 0.00 0.00 3.08
956 1127 5.512921 GCAGAGTAGGTAGGTAGGTAGGTAG 60.513 52.000 0.00 0.00 0.00 3.18
957 1128 5.012975 CAGAGTAGGTAGGTAGGTAGGTAGG 59.987 52.000 0.00 0.00 0.00 3.18
958 1129 4.910913 GAGTAGGTAGGTAGGTAGGTAGGT 59.089 50.000 0.00 0.00 0.00 3.08
959 1130 6.056997 AGTAGGTAGGTAGGTAGGTAGGTA 57.943 45.833 0.00 0.00 0.00 3.08
960 1131 5.847265 AGTAGGTAGGTAGGTAGGTAGGTAC 59.153 48.000 0.00 0.00 0.00 3.34
961 1132 3.984090 AGGTAGGTAGGTAGGTAGGTACC 59.016 52.174 2.73 2.73 46.82 3.34
1110 1281 2.680352 TGAGTCCTCGCCTCCCAC 60.680 66.667 0.00 0.00 0.00 4.61
1252 1427 3.134458 GGATCCTTGCCAGTTTAGATCG 58.866 50.000 3.84 0.00 32.69 3.69
1291 1466 1.765904 GGTTTCAGGCCAAGGGAAAAA 59.234 47.619 5.01 0.00 32.85 1.94
1318 1493 3.269178 CATCTGAACTTCTGAAGCTCCC 58.731 50.000 17.00 4.95 0.00 4.30
1366 1542 6.868339 GGAATGTTACCCTGAAAATGTTCTTG 59.132 38.462 0.00 0.00 34.60 3.02
1413 1591 1.064685 GGTGGTCCTGGGGATAACAAG 60.065 57.143 0.00 0.00 32.73 3.16
1445 1623 8.495949 CGCACATTTATTATTTTAGATCGTCCT 58.504 33.333 0.00 0.00 0.00 3.85
1593 1772 6.484540 CAGCATTAGTTCAACATGATCTGTC 58.515 40.000 0.00 0.00 36.98 3.51
1652 1838 7.826260 GAAAAGTTTTTCATCACTTGGTCAA 57.174 32.000 11.42 0.00 44.48 3.18
1699 1889 3.627395 TGGCGAACTGAAGGAATATGT 57.373 42.857 0.00 0.00 0.00 2.29
1740 1930 4.460263 AGATACAAAAGTGACTTGTGCCA 58.540 39.130 15.17 4.29 37.56 4.92
1741 1931 2.939460 ACAAAAGTGACTTGTGCCAC 57.061 45.000 15.17 0.00 35.70 5.01
1742 1932 1.476488 ACAAAAGTGACTTGTGCCACC 59.524 47.619 15.17 0.00 35.70 4.61
1758 1948 1.313772 CACCACATTGTTCGGTTCCA 58.686 50.000 0.00 0.00 0.00 3.53
1794 1984 3.381590 GGGGATTGTAGTTCCAAGCATTC 59.618 47.826 0.00 0.00 34.77 2.67
1875 2066 7.085746 TCTTCATTCACATGTTGCACATTAAG 58.914 34.615 0.00 0.00 36.53 1.85
1881 2072 6.614160 TCACATGTTGCACATTAAGATGAAG 58.386 36.000 0.00 0.00 36.53 3.02
1908 2100 6.661805 TCTTGGGTGTTTTAATTCCCTACATC 59.338 38.462 0.00 0.00 40.48 3.06
1957 2149 3.671008 TGCTGGCGATATAACGGTATT 57.329 42.857 0.00 0.00 0.00 1.89
1967 2159 5.568023 CGATATAACGGTATTGGTGGATGGT 60.568 44.000 0.00 0.00 0.00 3.55
1976 2168 5.422012 GGTATTGGTGGATGGTCAATCTTTT 59.578 40.000 0.00 0.00 35.43 2.27
2032 2224 5.643379 TCTGAAGTTTTTATGGCCATCAC 57.357 39.130 24.80 14.78 0.00 3.06
2073 2302 2.421529 GGAGTGTGTGTTTCCCTCTTGT 60.422 50.000 0.00 0.00 0.00 3.16
2192 2422 4.810345 TGGGAGAAACAACTAATGGGTTT 58.190 39.130 0.00 0.00 37.44 3.27
2195 2425 4.556233 GAGAAACAACTAATGGGTTTGCC 58.444 43.478 0.00 0.00 35.08 4.52
2207 2437 1.917872 GGTTTGCCCACATGGTTAGA 58.082 50.000 0.00 0.00 36.04 2.10
2231 2462 4.812476 TCGGGATCCTTGTGCGCG 62.812 66.667 12.58 0.00 39.00 6.86
2237 2468 3.529341 ATCCTTGTGCGCGTGTGGA 62.529 57.895 8.43 12.96 0.00 4.02
2242 2473 2.355837 GTGCGCGTGTGGAGAGAA 60.356 61.111 8.43 0.00 0.00 2.87
2293 2527 6.959639 TGGTACTTTTCTTTTTCTGATGCT 57.040 33.333 0.00 0.00 0.00 3.79
2392 2628 1.404391 TCTCTCGGTGCGGAAGAATAC 59.596 52.381 0.00 0.00 0.00 1.89
2403 2639 2.534349 CGGAAGAATACGACGAATGGTG 59.466 50.000 0.00 0.00 0.00 4.17
2409 2645 1.669049 TACGACGAATGGTGGCCGAT 61.669 55.000 0.00 0.00 0.00 4.18
2467 2703 0.341961 TGTACCAGGGGGAGCTACAT 59.658 55.000 0.00 0.00 38.05 2.29
2481 2717 2.159240 AGCTACATCATTCGAACTCGCA 60.159 45.455 0.00 0.00 39.60 5.10
2523 2759 5.997385 AGTAACTTTGAAATAACCACAGCG 58.003 37.500 0.00 0.00 0.00 5.18
2823 3059 3.113745 CGGATGCATTGCCAGGAC 58.886 61.111 6.12 0.00 0.00 3.85
2925 3161 0.461548 CGGAGAGCATAGGCACTTCA 59.538 55.000 5.94 0.00 41.23 3.02
2970 3206 2.040544 CAAGGGCATCGAAAGGCGT 61.041 57.895 8.36 6.47 41.80 5.68
3093 3329 1.739466 TCATTCTTGTTCGGCATGCTC 59.261 47.619 18.92 6.88 0.00 4.26
3126 3362 2.763448 AGAGGTTGATGCAGGACTAGAC 59.237 50.000 0.00 0.00 0.00 2.59
3255 3491 0.179166 CGGTCCATCGCATTTTGGTG 60.179 55.000 0.00 0.00 34.48 4.17
3285 3521 4.012374 TGCAAAGGATTGAGGAAGATGAC 58.988 43.478 0.00 0.00 38.94 3.06
3375 3611 0.831307 AGGTCGGAAGGCTAATGGAC 59.169 55.000 0.00 0.00 34.89 4.02
3450 3686 1.361668 CCCTCATCGAACTGTTGCCG 61.362 60.000 0.00 0.00 0.00 5.69
3531 3767 9.871238 AAGGTACAAAACTACACTATATCACAG 57.129 33.333 0.00 0.00 0.00 3.66
3535 3771 6.594159 ACAAAACTACACTATATCACAGTGCC 59.406 38.462 4.36 0.00 45.96 5.01
3619 3900 7.454260 AGACCAAAAACATTCTCCATCTAAC 57.546 36.000 0.00 0.00 0.00 2.34
3679 3995 9.617523 TGTAGATGAAAATGTGATGATGTATGT 57.382 29.630 0.00 0.00 0.00 2.29
3682 3998 9.617523 AGATGAAAATGTGATGATGTATGTACA 57.382 29.630 0.00 0.00 40.98 2.90
3696 4012 9.883142 TGATGTATGTACAATCAAATACTCACA 57.117 29.630 0.00 0.00 39.99 3.58
3704 4020 9.722056 GTACAATCAAATACTCACATTGAATCC 57.278 33.333 0.00 0.00 36.72 3.01
3705 4021 7.475015 ACAATCAAATACTCACATTGAATCCG 58.525 34.615 0.00 0.00 36.72 4.18
3706 4022 7.336679 ACAATCAAATACTCACATTGAATCCGA 59.663 33.333 0.00 0.00 36.72 4.55
3707 4023 6.908870 TCAAATACTCACATTGAATCCGAG 57.091 37.500 0.00 0.17 30.60 4.63
3708 4024 6.406370 TCAAATACTCACATTGAATCCGAGT 58.594 36.000 9.99 9.99 40.03 4.18
3709 4025 6.313658 TCAAATACTCACATTGAATCCGAGTG 59.686 38.462 13.50 2.55 37.50 3.51
3710 4026 3.685139 ACTCACATTGAATCCGAGTGT 57.315 42.857 5.47 0.00 35.67 3.55
3711 4027 4.801330 ACTCACATTGAATCCGAGTGTA 57.199 40.909 5.47 0.00 35.67 2.90
3712 4028 4.495422 ACTCACATTGAATCCGAGTGTAC 58.505 43.478 5.47 0.00 35.67 2.90
3713 4029 4.021456 ACTCACATTGAATCCGAGTGTACA 60.021 41.667 5.47 0.00 35.67 2.90
3714 4030 4.494484 TCACATTGAATCCGAGTGTACAG 58.506 43.478 0.00 0.00 0.00 2.74
3715 4031 3.062639 CACATTGAATCCGAGTGTACAGC 59.937 47.826 0.00 0.00 0.00 4.40
3716 4032 3.261580 CATTGAATCCGAGTGTACAGCA 58.738 45.455 0.00 0.00 0.00 4.41
3717 4033 3.610040 TTGAATCCGAGTGTACAGCAT 57.390 42.857 0.00 0.00 0.00 3.79
3718 4034 2.892374 TGAATCCGAGTGTACAGCATG 58.108 47.619 0.00 0.00 46.00 4.06
3719 4035 2.495669 TGAATCCGAGTGTACAGCATGA 59.504 45.455 0.00 0.00 39.69 3.07
3720 4036 3.132824 TGAATCCGAGTGTACAGCATGAT 59.867 43.478 0.00 0.00 39.69 2.45
3721 4037 4.340950 TGAATCCGAGTGTACAGCATGATA 59.659 41.667 0.00 0.00 39.69 2.15
3722 4038 5.011023 TGAATCCGAGTGTACAGCATGATAT 59.989 40.000 0.00 0.00 39.69 1.63
3723 4039 4.505313 TCCGAGTGTACAGCATGATATC 57.495 45.455 0.00 0.00 39.69 1.63
3724 4040 4.145052 TCCGAGTGTACAGCATGATATCT 58.855 43.478 3.98 0.00 39.69 1.98
3725 4041 4.022849 TCCGAGTGTACAGCATGATATCTG 60.023 45.833 3.98 0.00 39.69 2.90
3726 4042 4.261783 CCGAGTGTACAGCATGATATCTGT 60.262 45.833 3.98 2.64 44.76 3.41
3727 4043 5.048713 CCGAGTGTACAGCATGATATCTGTA 60.049 44.000 3.98 1.55 42.81 2.74
3728 4044 6.082984 CGAGTGTACAGCATGATATCTGTAG 58.917 44.000 10.17 0.80 43.84 2.74
3729 4045 6.073003 CGAGTGTACAGCATGATATCTGTAGA 60.073 42.308 10.17 7.34 43.84 2.59
3730 4046 7.361628 CGAGTGTACAGCATGATATCTGTAGAT 60.362 40.741 10.17 0.00 43.84 1.98
3731 4047 7.600960 AGTGTACAGCATGATATCTGTAGATG 58.399 38.462 10.17 0.14 43.84 2.90
3732 4048 7.449704 AGTGTACAGCATGATATCTGTAGATGA 59.550 37.037 10.17 0.00 43.84 2.92
3733 4049 8.084684 GTGTACAGCATGATATCTGTAGATGAA 58.915 37.037 10.17 0.00 43.84 2.57
3734 4050 8.641541 TGTACAGCATGATATCTGTAGATGAAA 58.358 33.333 10.17 0.00 43.84 2.69
3735 4051 9.481340 GTACAGCATGATATCTGTAGATGAAAA 57.519 33.333 10.17 0.00 43.84 2.29
3737 4053 9.000486 ACAGCATGATATCTGTAGATGAAAATG 58.000 33.333 3.98 5.00 41.32 2.32
3738 4054 9.000486 CAGCATGATATCTGTAGATGAAAATGT 58.000 33.333 3.98 0.00 39.69 2.71
3739 4055 9.000486 AGCATGATATCTGTAGATGAAAATGTG 58.000 33.333 3.98 0.00 36.05 3.21
3740 4056 8.996271 GCATGATATCTGTAGATGAAAATGTGA 58.004 33.333 3.98 0.00 36.05 3.58
3747 4063 9.623000 ATCTGTAGATGAAAATGTGATGATGAA 57.377 29.630 0.00 0.00 32.68 2.57
3748 4064 8.886719 TCTGTAGATGAAAATGTGATGATGAAC 58.113 33.333 0.00 0.00 0.00 3.18
3749 4065 8.564509 TGTAGATGAAAATGTGATGATGAACA 57.435 30.769 0.00 0.00 0.00 3.18
3750 4066 8.671028 TGTAGATGAAAATGTGATGATGAACAG 58.329 33.333 0.00 0.00 0.00 3.16
3751 4067 7.698506 AGATGAAAATGTGATGATGAACAGT 57.301 32.000 0.00 0.00 0.00 3.55
3752 4068 8.797350 AGATGAAAATGTGATGATGAACAGTA 57.203 30.769 0.00 0.00 0.00 2.74
3753 4069 8.671921 AGATGAAAATGTGATGATGAACAGTAC 58.328 33.333 0.00 0.00 0.00 2.73
3754 4070 7.984422 TGAAAATGTGATGATGAACAGTACT 57.016 32.000 0.00 0.00 0.00 2.73
3755 4071 8.032952 TGAAAATGTGATGATGAACAGTACTC 57.967 34.615 0.00 0.00 0.00 2.59
3756 4072 6.992063 AAATGTGATGATGAACAGTACTCC 57.008 37.500 0.00 0.00 0.00 3.85
3757 4073 4.110036 TGTGATGATGAACAGTACTCCG 57.890 45.455 0.00 0.00 0.00 4.63
3758 4074 3.509967 TGTGATGATGAACAGTACTCCGT 59.490 43.478 0.00 0.00 0.00 4.69
3759 4075 4.021456 TGTGATGATGAACAGTACTCCGTT 60.021 41.667 0.00 0.00 0.00 4.44
3760 4076 4.563184 GTGATGATGAACAGTACTCCGTTC 59.437 45.833 15.72 15.72 41.53 3.95
3761 4077 3.211803 TGATGAACAGTACTCCGTTCG 57.788 47.619 16.85 0.00 43.59 3.95
3762 4078 2.555325 TGATGAACAGTACTCCGTTCGT 59.445 45.455 16.62 16.62 43.59 3.85
3763 4079 3.005050 TGATGAACAGTACTCCGTTCGTT 59.995 43.478 17.34 7.72 43.59 3.85
3764 4080 3.441496 TGAACAGTACTCCGTTCGTTT 57.559 42.857 16.85 0.00 43.59 3.60
3765 4081 3.784338 TGAACAGTACTCCGTTCGTTTT 58.216 40.909 16.85 0.00 43.59 2.43
3766 4082 4.183101 TGAACAGTACTCCGTTCGTTTTT 58.817 39.130 16.85 0.00 43.59 1.94
3767 4083 5.347342 TGAACAGTACTCCGTTCGTTTTTA 58.653 37.500 16.85 1.37 43.59 1.52
3768 4084 5.984926 TGAACAGTACTCCGTTCGTTTTTAT 59.015 36.000 16.85 0.00 43.59 1.40
3769 4085 7.144661 TGAACAGTACTCCGTTCGTTTTTATA 58.855 34.615 16.85 0.27 43.59 0.98
3770 4086 7.651304 TGAACAGTACTCCGTTCGTTTTTATAA 59.349 33.333 16.85 0.00 43.59 0.98
3771 4087 7.572502 ACAGTACTCCGTTCGTTTTTATAAG 57.427 36.000 0.00 0.00 0.00 1.73
3772 4088 6.587608 ACAGTACTCCGTTCGTTTTTATAAGG 59.412 38.462 0.00 0.00 0.00 2.69
3773 4089 4.934075 ACTCCGTTCGTTTTTATAAGGC 57.066 40.909 0.00 0.00 0.00 4.35
3774 4090 3.368843 ACTCCGTTCGTTTTTATAAGGCG 59.631 43.478 0.00 0.00 0.00 5.52
3775 4091 3.324993 TCCGTTCGTTTTTATAAGGCGT 58.675 40.909 5.68 0.00 0.00 5.68
3776 4092 3.745458 TCCGTTCGTTTTTATAAGGCGTT 59.255 39.130 0.00 0.00 0.00 4.84
3777 4093 4.213059 TCCGTTCGTTTTTATAAGGCGTTT 59.787 37.500 0.00 0.00 0.00 3.60
3778 4094 4.318854 CCGTTCGTTTTTATAAGGCGTTTG 59.681 41.667 0.00 0.00 0.00 2.93
3779 4095 5.138788 CGTTCGTTTTTATAAGGCGTTTGA 58.861 37.500 0.00 0.00 0.00 2.69
3780 4096 5.279751 CGTTCGTTTTTATAAGGCGTTTGAG 59.720 40.000 0.00 0.00 0.00 3.02
3781 4097 6.365050 GTTCGTTTTTATAAGGCGTTTGAGA 58.635 36.000 0.00 0.00 0.00 3.27
3782 4098 5.919196 TCGTTTTTATAAGGCGTTTGAGAC 58.081 37.500 0.00 0.00 0.00 3.36
3783 4099 5.466058 TCGTTTTTATAAGGCGTTTGAGACA 59.534 36.000 0.00 0.00 0.00 3.41
3784 4100 5.788531 CGTTTTTATAAGGCGTTTGAGACAG 59.211 40.000 0.00 0.00 0.00 3.51
3785 4101 4.939509 TTTATAAGGCGTTTGAGACAGC 57.060 40.909 0.00 0.00 0.00 4.40
3786 4102 2.770164 ATAAGGCGTTTGAGACAGCT 57.230 45.000 0.00 0.00 0.00 4.24
3787 4103 1.795768 TAAGGCGTTTGAGACAGCTG 58.204 50.000 13.48 13.48 0.00 4.24
3788 4104 0.106708 AAGGCGTTTGAGACAGCTGA 59.893 50.000 23.35 0.00 0.00 4.26
3789 4105 0.320247 AGGCGTTTGAGACAGCTGAG 60.320 55.000 23.35 0.00 0.00 3.35
3790 4106 0.601311 GGCGTTTGAGACAGCTGAGT 60.601 55.000 23.35 6.49 0.00 3.41
3791 4107 1.221414 GCGTTTGAGACAGCTGAGTT 58.779 50.000 23.35 4.76 0.00 3.01
3792 4108 1.599542 GCGTTTGAGACAGCTGAGTTT 59.400 47.619 23.35 0.00 0.00 2.66
3793 4109 2.600792 GCGTTTGAGACAGCTGAGTTTG 60.601 50.000 23.35 3.25 0.00 2.93
3794 4110 2.866156 CGTTTGAGACAGCTGAGTTTGA 59.134 45.455 23.35 0.00 0.00 2.69
3795 4111 3.309682 CGTTTGAGACAGCTGAGTTTGAA 59.690 43.478 23.35 4.96 0.00 2.69
3796 4112 4.592179 GTTTGAGACAGCTGAGTTTGAAC 58.408 43.478 23.35 13.23 0.00 3.18
3797 4113 3.827008 TGAGACAGCTGAGTTTGAACT 57.173 42.857 23.35 6.00 43.16 3.01
3798 4114 3.461061 TGAGACAGCTGAGTTTGAACTG 58.539 45.455 23.35 0.00 39.88 3.16
3799 4115 3.118629 TGAGACAGCTGAGTTTGAACTGT 60.119 43.478 23.35 0.00 43.93 3.55
3800 4116 3.873952 GAGACAGCTGAGTTTGAACTGTT 59.126 43.478 23.35 0.00 41.45 3.16
3801 4117 4.265073 AGACAGCTGAGTTTGAACTGTTT 58.735 39.130 23.35 0.00 41.45 2.83
3802 4118 5.428253 AGACAGCTGAGTTTGAACTGTTTA 58.572 37.500 23.35 0.00 41.45 2.01
3803 4119 5.525378 AGACAGCTGAGTTTGAACTGTTTAG 59.475 40.000 23.35 0.00 41.45 1.85
3804 4120 5.186198 ACAGCTGAGTTTGAACTGTTTAGT 58.814 37.500 23.35 0.00 38.38 2.24
3805 4121 6.346096 ACAGCTGAGTTTGAACTGTTTAGTA 58.654 36.000 23.35 0.00 38.38 1.82
3806 4122 6.258068 ACAGCTGAGTTTGAACTGTTTAGTAC 59.742 38.462 23.35 0.00 38.38 2.73
3807 4123 6.257849 CAGCTGAGTTTGAACTGTTTAGTACA 59.742 38.462 8.42 0.00 39.88 2.90
3808 4124 6.258068 AGCTGAGTTTGAACTGTTTAGTACAC 59.742 38.462 0.30 0.00 39.88 2.90
3809 4125 6.258068 GCTGAGTTTGAACTGTTTAGTACACT 59.742 38.462 0.30 0.00 39.88 3.55
3810 4126 7.534085 TGAGTTTGAACTGTTTAGTACACTG 57.466 36.000 0.30 0.00 39.88 3.66
3811 4127 7.101054 TGAGTTTGAACTGTTTAGTACACTGT 58.899 34.615 0.30 0.00 39.88 3.55
3812 4128 7.277098 TGAGTTTGAACTGTTTAGTACACTGTC 59.723 37.037 0.30 0.00 39.88 3.51
3813 4129 7.328737 AGTTTGAACTGTTTAGTACACTGTCT 58.671 34.615 0.00 0.00 37.98 3.41
3814 4130 7.277981 AGTTTGAACTGTTTAGTACACTGTCTG 59.722 37.037 0.00 0.00 37.98 3.51
3815 4131 6.459670 TGAACTGTTTAGTACACTGTCTGA 57.540 37.500 0.00 0.00 35.69 3.27
3816 4132 6.869695 TGAACTGTTTAGTACACTGTCTGAA 58.130 36.000 0.00 0.00 35.69 3.02
3817 4133 7.497595 TGAACTGTTTAGTACACTGTCTGAAT 58.502 34.615 0.00 0.00 35.69 2.57
3818 4134 7.985184 TGAACTGTTTAGTACACTGTCTGAATT 59.015 33.333 0.00 0.00 35.69 2.17
3819 4135 8.732746 AACTGTTTAGTACACTGTCTGAATTT 57.267 30.769 0.00 0.00 35.69 1.82
3820 4136 9.826574 AACTGTTTAGTACACTGTCTGAATTTA 57.173 29.630 0.00 0.00 35.69 1.40
3821 4137 9.257651 ACTGTTTAGTACACTGTCTGAATTTAC 57.742 33.333 0.00 0.00 34.74 2.01
3822 4138 9.477484 CTGTTTAGTACACTGTCTGAATTTACT 57.523 33.333 0.00 0.00 32.10 2.24
3828 4144 8.975439 AGTACACTGTCTGAATTTACTAAAACG 58.025 33.333 0.00 0.00 0.00 3.60
3829 4145 7.781548 ACACTGTCTGAATTTACTAAAACGT 57.218 32.000 0.00 0.00 0.00 3.99
3830 4146 7.848491 ACACTGTCTGAATTTACTAAAACGTC 58.152 34.615 0.00 0.00 0.00 4.34
3831 4147 7.709613 ACACTGTCTGAATTTACTAAAACGTCT 59.290 33.333 0.00 0.00 0.00 4.18
3832 4148 8.548721 CACTGTCTGAATTTACTAAAACGTCTT 58.451 33.333 0.00 0.00 0.00 3.01
3833 4149 9.754382 ACTGTCTGAATTTACTAAAACGTCTTA 57.246 29.630 0.00 0.00 0.00 2.10
3849 4165 8.928270 AAACGTCTTATATAAGTGAACAGAGG 57.072 34.615 19.58 8.80 34.93 3.69
3850 4166 7.040473 ACGTCTTATATAAGTGAACAGAGGG 57.960 40.000 19.58 3.74 34.93 4.30
3851 4167 6.832384 ACGTCTTATATAAGTGAACAGAGGGA 59.168 38.462 19.58 0.00 34.93 4.20
3852 4168 7.013464 ACGTCTTATATAAGTGAACAGAGGGAG 59.987 40.741 19.58 2.63 34.93 4.30
3891 4207 8.284945 TCTTGATTTGAATAAGGTTCTGATGG 57.715 34.615 0.00 0.00 0.00 3.51
3894 4210 8.827832 TGATTTGAATAAGGTTCTGATGGAAT 57.172 30.769 0.00 0.00 36.24 3.01
3895 4211 9.258629 TGATTTGAATAAGGTTCTGATGGAATT 57.741 29.630 0.00 0.00 36.24 2.17
3903 4262 3.313526 GGTTCTGATGGAATTGTGATCGG 59.686 47.826 0.00 0.00 36.24 4.18
4420 4779 2.031870 GAGAGGAGGAAGAAGAGCTCC 58.968 57.143 10.93 0.00 34.61 4.70
4668 5034 1.404843 ATCCGAGAACCTCTGGTAGC 58.595 55.000 0.00 0.00 33.12 3.58
4708 5077 4.552166 GCTTTTGCAACTGACTTCTACA 57.448 40.909 0.00 0.00 46.58 2.74
4736 5105 9.698617 GGTTAGTGAAGTAAATAGCATAAAACG 57.301 33.333 0.00 0.00 0.00 3.60
4748 5117 3.936453 AGCATAAAACGACCGCATTCTAA 59.064 39.130 0.00 0.00 0.00 2.10
4751 5120 1.734163 AAACGACCGCATTCTAAGGG 58.266 50.000 0.00 0.00 0.00 3.95
4754 5123 1.002773 ACGACCGCATTCTAAGGGTTT 59.997 47.619 0.00 0.00 31.66 3.27
4784 5153 2.037251 ACCGCATTGGACTATCGCTTAT 59.963 45.455 0.00 0.00 42.00 1.73
4866 5235 9.335891 CTGTTGAGATATCGTTAGATCATGTAC 57.664 37.037 0.00 0.00 38.26 2.90
4868 5237 7.073342 TGAGATATCGTTAGATCATGTACCG 57.927 40.000 0.00 0.00 38.26 4.02
4912 5281 0.804989 CCAATCTTGACCGAACCTGC 59.195 55.000 0.00 0.00 0.00 4.85
4919 5288 3.383185 TCTTGACCGAACCTGCAATTTTT 59.617 39.130 0.00 0.00 0.00 1.94
4942 5311 1.004595 GTCGTTCGGCCCTGTATTTC 58.995 55.000 0.00 0.00 0.00 2.17
4990 5390 4.042187 AGTTTCTCTCCACTTAGCCACAAT 59.958 41.667 0.00 0.00 0.00 2.71
5000 5400 3.844211 ACTTAGCCACAATTCCTCTACCA 59.156 43.478 0.00 0.00 0.00 3.25
5001 5401 4.475016 ACTTAGCCACAATTCCTCTACCAT 59.525 41.667 0.00 0.00 0.00 3.55
5003 5403 2.846206 AGCCACAATTCCTCTACCATGA 59.154 45.455 0.00 0.00 0.00 3.07
5004 5404 3.461085 AGCCACAATTCCTCTACCATGAT 59.539 43.478 0.00 0.00 0.00 2.45
5016 5424 4.762220 TCTACCATGATACATCCCCATCA 58.238 43.478 0.00 0.00 35.72 3.07
5017 5425 5.353125 TCTACCATGATACATCCCCATCAT 58.647 41.667 0.00 0.00 41.48 2.45
5034 5442 2.034879 ATTGACAAGCTCCACCGCG 61.035 57.895 0.00 0.00 34.40 6.46
5035 5443 2.731691 ATTGACAAGCTCCACCGCGT 62.732 55.000 4.92 0.00 34.40 6.01
5071 5479 0.178967 TGGGCTCATGCTTTGGACAA 60.179 50.000 0.00 0.00 39.59 3.18
5074 5482 1.888512 GGCTCATGCTTTGGACAAGAA 59.111 47.619 0.00 0.00 39.59 2.52
5078 5486 2.886523 TCATGCTTTGGACAAGAACAGG 59.113 45.455 0.00 0.00 0.00 4.00
5086 5496 1.518903 GACAAGAACAGGCACCCAGC 61.519 60.000 0.00 0.00 44.65 4.85
5093 5503 2.121385 AGGCACCCAGCTCTCTGA 59.879 61.111 0.00 0.00 42.95 3.27
5100 5510 1.077993 ACCCAGCTCTCTGACTACCTT 59.922 52.381 0.00 0.00 42.95 3.50
5102 5512 1.480137 CCAGCTCTCTGACTACCTTGG 59.520 57.143 0.00 0.00 42.95 3.61
5103 5513 2.175202 CAGCTCTCTGACTACCTTGGT 58.825 52.381 0.00 0.00 42.95 3.67
5110 5520 0.815734 TGACTACCTTGGTAGCGAGC 59.184 55.000 22.62 12.42 0.00 5.03
5113 5523 0.248539 CTACCTTGGTAGCGAGCGAC 60.249 60.000 13.16 0.00 0.00 5.19
5134 5544 1.376609 GGGCCCGTCTTGTATGCTTG 61.377 60.000 5.69 0.00 0.00 4.01
5165 5575 0.252197 GGTAAGCCCACCGACAATCT 59.748 55.000 0.00 0.00 0.00 2.40
5174 5597 3.493350 CCCACCGACAATCTAAGATCTGG 60.493 52.174 0.00 0.00 0.00 3.86
5177 5600 3.126831 CCGACAATCTAAGATCTGGCAC 58.873 50.000 0.00 0.00 0.00 5.01
5225 5648 6.912591 GCTTTATCTTTAATTCCATGTCACCG 59.087 38.462 0.00 0.00 0.00 4.94
5249 5672 0.911769 TGATGATCCAGGTCACCCAC 59.088 55.000 0.00 0.00 0.00 4.61
5260 5683 1.827789 TCACCCACTGCACAAAGGC 60.828 57.895 0.00 0.00 0.00 4.35
5265 5688 1.280746 CACTGCACAAAGGCTGACG 59.719 57.895 0.00 0.00 36.66 4.35
5272 5695 1.210931 CAAAGGCTGACGTGGCATG 59.789 57.895 4.87 4.87 34.73 4.06
5306 5729 2.438975 CCTCCCACATGCATGCGT 60.439 61.111 26.53 10.53 0.00 5.24
5311 5734 2.475466 CCACATGCATGCGTCCCTC 61.475 63.158 26.53 0.00 0.00 4.30
5318 5741 2.363795 ATGCGTCCCTCGGAAGGA 60.364 61.111 0.00 0.00 46.67 3.36
5456 5896 2.604614 GCCAATCTCACAACCGAACAAC 60.605 50.000 0.00 0.00 0.00 3.32
5473 5913 8.931568 ACCGAACAACTACCTATTATTATCCTT 58.068 33.333 0.00 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.902408 TGGTTCTAAAGGTCTCCAAAAGTAA 58.098 36.000 0.00 0.00 0.00 2.24
1 2 6.503560 TGGTTCTAAAGGTCTCCAAAAGTA 57.496 37.500 0.00 0.00 0.00 2.24
2 3 5.382664 TGGTTCTAAAGGTCTCCAAAAGT 57.617 39.130 0.00 0.00 0.00 2.66
3 4 5.770162 ACATGGTTCTAAAGGTCTCCAAAAG 59.230 40.000 0.00 0.00 0.00 2.27
4 5 5.701224 ACATGGTTCTAAAGGTCTCCAAAA 58.299 37.500 0.00 0.00 0.00 2.44
5 6 5.319043 ACATGGTTCTAAAGGTCTCCAAA 57.681 39.130 0.00 0.00 0.00 3.28
6 7 4.993705 ACATGGTTCTAAAGGTCTCCAA 57.006 40.909 0.00 0.00 0.00 3.53
7 8 4.104102 ACAACATGGTTCTAAAGGTCTCCA 59.896 41.667 0.00 0.00 0.00 3.86
8 9 4.652822 ACAACATGGTTCTAAAGGTCTCC 58.347 43.478 0.00 0.00 0.00 3.71
9 10 5.179555 GTGACAACATGGTTCTAAAGGTCTC 59.820 44.000 0.00 0.00 0.00 3.36
10 11 5.063880 GTGACAACATGGTTCTAAAGGTCT 58.936 41.667 0.00 0.00 0.00 3.85
11 12 5.063880 AGTGACAACATGGTTCTAAAGGTC 58.936 41.667 0.00 0.00 0.00 3.85
12 13 5.048846 AGTGACAACATGGTTCTAAAGGT 57.951 39.130 0.00 0.00 0.00 3.50
13 14 6.231211 AGTAGTGACAACATGGTTCTAAAGG 58.769 40.000 0.00 0.00 0.00 3.11
14 15 7.730364 AAGTAGTGACAACATGGTTCTAAAG 57.270 36.000 0.00 0.00 0.00 1.85
15 16 9.787435 ATAAAGTAGTGACAACATGGTTCTAAA 57.213 29.630 0.00 0.00 0.00 1.85
16 17 9.787435 AATAAAGTAGTGACAACATGGTTCTAA 57.213 29.630 0.00 0.00 0.00 2.10
17 18 9.787435 AAATAAAGTAGTGACAACATGGTTCTA 57.213 29.630 0.00 0.00 0.00 2.10
18 19 8.567948 CAAATAAAGTAGTGACAACATGGTTCT 58.432 33.333 0.00 0.00 0.00 3.01
19 20 7.807907 CCAAATAAAGTAGTGACAACATGGTTC 59.192 37.037 0.00 0.00 0.00 3.62
20 21 7.657336 CCAAATAAAGTAGTGACAACATGGTT 58.343 34.615 0.00 0.00 0.00 3.67
21 22 6.294508 GCCAAATAAAGTAGTGACAACATGGT 60.295 38.462 0.00 0.00 0.00 3.55
22 23 6.071952 AGCCAAATAAAGTAGTGACAACATGG 60.072 38.462 0.00 0.00 0.00 3.66
23 24 6.913170 AGCCAAATAAAGTAGTGACAACATG 58.087 36.000 0.00 0.00 0.00 3.21
24 25 8.630054 TTAGCCAAATAAAGTAGTGACAACAT 57.370 30.769 0.00 0.00 0.00 2.71
25 26 8.630054 ATTAGCCAAATAAAGTAGTGACAACA 57.370 30.769 0.00 0.00 0.00 3.33
32 33 9.067986 GCCATCTTATTAGCCAAATAAAGTAGT 57.932 33.333 4.07 0.00 39.10 2.73
33 34 8.515414 GGCCATCTTATTAGCCAAATAAAGTAG 58.485 37.037 0.00 0.00 45.07 2.57
34 35 7.174253 CGGCCATCTTATTAGCCAAATAAAGTA 59.826 37.037 2.24 0.00 46.08 2.24
35 36 6.016276 CGGCCATCTTATTAGCCAAATAAAGT 60.016 38.462 2.24 0.00 46.08 2.66
36 37 6.016276 ACGGCCATCTTATTAGCCAAATAAAG 60.016 38.462 2.24 0.00 46.08 1.85
37 38 5.830991 ACGGCCATCTTATTAGCCAAATAAA 59.169 36.000 2.24 0.00 46.08 1.40
38 39 5.381757 ACGGCCATCTTATTAGCCAAATAA 58.618 37.500 2.24 2.79 46.08 1.40
39 40 4.980573 ACGGCCATCTTATTAGCCAAATA 58.019 39.130 2.24 0.00 46.08 1.40
40 41 3.832527 ACGGCCATCTTATTAGCCAAAT 58.167 40.909 2.24 0.00 46.08 2.32
41 42 3.290948 ACGGCCATCTTATTAGCCAAA 57.709 42.857 2.24 0.00 46.08 3.28
42 43 4.323417 CATACGGCCATCTTATTAGCCAA 58.677 43.478 2.24 0.00 46.08 4.52
43 44 3.868369 GCATACGGCCATCTTATTAGCCA 60.868 47.826 2.24 0.00 46.08 4.75
44 45 2.678336 GCATACGGCCATCTTATTAGCC 59.322 50.000 2.24 0.00 42.18 3.93
45 46 3.334691 TGCATACGGCCATCTTATTAGC 58.665 45.455 2.24 0.00 43.89 3.09
46 47 5.423015 AGATGCATACGGCCATCTTATTAG 58.577 41.667 2.24 0.00 43.89 1.73
47 48 5.420725 AGATGCATACGGCCATCTTATTA 57.579 39.130 2.24 0.00 43.89 0.98
48 49 4.292186 AGATGCATACGGCCATCTTATT 57.708 40.909 2.24 0.00 43.89 1.40
49 50 3.988976 AGATGCATACGGCCATCTTAT 57.011 42.857 2.24 0.00 43.89 1.73
50 51 3.769739 AAGATGCATACGGCCATCTTA 57.230 42.857 11.07 0.00 42.85 2.10
51 52 2.645838 AAGATGCATACGGCCATCTT 57.354 45.000 2.24 5.69 41.39 2.40
52 53 2.105477 AGAAAGATGCATACGGCCATCT 59.895 45.455 2.24 0.00 43.89 2.90
53 54 2.225019 CAGAAAGATGCATACGGCCATC 59.775 50.000 2.24 0.00 43.89 3.51
54 55 2.158769 TCAGAAAGATGCATACGGCCAT 60.159 45.455 2.24 0.00 43.89 4.40
55 56 1.209261 TCAGAAAGATGCATACGGCCA 59.791 47.619 2.24 0.00 43.89 5.36
56 57 1.953559 TCAGAAAGATGCATACGGCC 58.046 50.000 0.00 0.00 43.89 6.13
57 58 3.532892 CATCAGAAAGATGCATACGGC 57.467 47.619 0.00 0.00 46.90 5.68
66 67 2.158986 CCGGTCTCTGCATCAGAAAGAT 60.159 50.000 0.00 0.00 40.18 2.40
67 68 1.205655 CCGGTCTCTGCATCAGAAAGA 59.794 52.381 0.00 0.00 40.18 2.52
68 69 1.649664 CCGGTCTCTGCATCAGAAAG 58.350 55.000 0.00 0.00 40.18 2.62
69 70 0.250234 CCCGGTCTCTGCATCAGAAA 59.750 55.000 0.00 0.00 40.18 2.52
70 71 1.617018 CCCCGGTCTCTGCATCAGAA 61.617 60.000 0.00 0.00 40.18 3.02
71 72 2.060383 CCCCGGTCTCTGCATCAGA 61.060 63.158 0.00 0.00 38.25 3.27
72 73 1.617018 TTCCCCGGTCTCTGCATCAG 61.617 60.000 0.00 0.00 0.00 2.90
73 74 0.982852 ATTCCCCGGTCTCTGCATCA 60.983 55.000 0.00 0.00 0.00 3.07
74 75 0.250081 GATTCCCCGGTCTCTGCATC 60.250 60.000 0.00 0.00 0.00 3.91
75 76 1.700042 GGATTCCCCGGTCTCTGCAT 61.700 60.000 0.00 0.00 0.00 3.96
76 77 2.367202 GGATTCCCCGGTCTCTGCA 61.367 63.158 0.00 0.00 0.00 4.41
77 78 2.506472 GGATTCCCCGGTCTCTGC 59.494 66.667 0.00 0.00 0.00 4.26
78 79 3.231298 GGGATTCCCCGGTCTCTG 58.769 66.667 11.02 0.00 44.02 3.35
108 109 7.317722 ACTGTACTCCCTTAGTGATCTTTTT 57.682 36.000 0.00 0.00 39.39 1.94
109 110 6.936968 ACTGTACTCCCTTAGTGATCTTTT 57.063 37.500 0.00 0.00 39.39 2.27
110 111 8.611051 AATACTGTACTCCCTTAGTGATCTTT 57.389 34.615 0.00 0.00 39.39 2.52
111 112 9.884814 ATAATACTGTACTCCCTTAGTGATCTT 57.115 33.333 0.00 0.00 39.39 2.40
119 120 8.573885 CATCGTCAATAATACTGTACTCCCTTA 58.426 37.037 0.00 0.00 0.00 2.69
122 123 5.634020 GCATCGTCAATAATACTGTACTCCC 59.366 44.000 0.00 0.00 0.00 4.30
198 200 8.829373 AAATAGATTGCTCTGGTTCCTTTTAT 57.171 30.769 0.00 0.00 32.66 1.40
211 213 6.772716 TGGGTATTCCTTGAAATAGATTGCTC 59.227 38.462 0.00 0.00 36.20 4.26
453 564 4.572985 TTCAACAAAGATGTGGCAAGAG 57.427 40.909 0.00 0.00 40.46 2.85
495 606 7.329717 CGAAGAAGGATGCTATAGTCCAAATAC 59.670 40.741 11.04 1.19 36.96 1.89
500 611 4.470602 TCGAAGAAGGATGCTATAGTCCA 58.529 43.478 11.04 0.00 36.96 4.02
501 612 5.455056 TTCGAAGAAGGATGCTATAGTCC 57.545 43.478 0.84 1.40 45.90 3.85
526 692 8.416329 CCCTCCATCCTAAAATAAATGTCTTTG 58.584 37.037 0.00 0.00 0.00 2.77
529 695 7.129504 ACTCCCTCCATCCTAAAATAAATGTCT 59.870 37.037 0.00 0.00 0.00 3.41
607 773 0.614812 TACGAGTAAAAGGGGTGGCC 59.385 55.000 0.00 0.00 0.00 5.36
608 774 2.027837 TCTTACGAGTAAAAGGGGTGGC 60.028 50.000 0.00 0.00 0.00 5.01
629 795 4.893608 ACAAAGAAACACAAGTGCCTTTT 58.106 34.783 0.00 0.00 30.95 2.27
728 897 3.653344 GGTTTCTTGGTTTGATTGCTCC 58.347 45.455 0.00 0.00 0.00 4.70
729 898 3.308530 CGGTTTCTTGGTTTGATTGCTC 58.691 45.455 0.00 0.00 0.00 4.26
730 899 2.035832 CCGGTTTCTTGGTTTGATTGCT 59.964 45.455 0.00 0.00 0.00 3.91
731 900 2.035321 TCCGGTTTCTTGGTTTGATTGC 59.965 45.455 0.00 0.00 0.00 3.56
754 923 8.066595 GGAGAGATATTCAATGACAAACATTCG 58.933 37.037 0.00 0.00 46.01 3.34
755 924 8.348507 GGGAGAGATATTCAATGACAAACATTC 58.651 37.037 0.00 0.00 46.01 2.67
757 926 7.580910 AGGGAGAGATATTCAATGACAAACAT 58.419 34.615 0.00 0.00 41.45 2.71
909 1080 2.558795 TCTCGTGGAGAAGAACAGGAAG 59.441 50.000 0.00 0.00 35.59 3.46
914 1085 0.603569 GCCTCTCGTGGAGAAGAACA 59.396 55.000 9.11 0.00 44.45 3.18
915 1086 0.603569 TGCCTCTCGTGGAGAAGAAC 59.396 55.000 9.11 0.00 44.45 3.01
954 1125 4.691376 GCCAAAATGGATGGATGGTACCTA 60.691 45.833 14.36 0.00 40.96 3.08
956 1127 2.365293 GCCAAAATGGATGGATGGTACC 59.635 50.000 4.43 4.43 40.96 3.34
957 1128 3.030291 TGCCAAAATGGATGGATGGTAC 58.970 45.455 0.00 0.00 40.96 3.34
958 1129 3.395054 TGCCAAAATGGATGGATGGTA 57.605 42.857 0.00 0.00 40.96 3.25
959 1130 2.250921 TGCCAAAATGGATGGATGGT 57.749 45.000 0.00 0.00 40.96 3.55
960 1131 2.158871 CCTTGCCAAAATGGATGGATGG 60.159 50.000 0.00 0.00 40.96 3.51
961 1132 2.767394 TCCTTGCCAAAATGGATGGATG 59.233 45.455 0.00 0.00 40.96 3.51
962 1133 3.036091 CTCCTTGCCAAAATGGATGGAT 58.964 45.455 0.00 0.00 40.96 3.41
963 1134 2.042842 TCTCCTTGCCAAAATGGATGGA 59.957 45.455 0.00 3.39 40.96 3.41
1110 1281 0.889306 AGAAACCGACGAGGAAGAGG 59.111 55.000 8.56 0.00 45.00 3.69
1252 1427 5.405935 AACCCATGAAATTAGCTCCAAAC 57.594 39.130 0.00 0.00 0.00 2.93
1291 1466 4.082354 GCTTCAGAAGTTCAGATGCCATTT 60.082 41.667 19.43 0.00 30.45 2.32
1318 1493 3.374058 ACTGTTTTCTTGAGTTGGACACG 59.626 43.478 0.00 0.00 0.00 4.49
1394 1572 1.913419 TCTTGTTATCCCCAGGACCAC 59.087 52.381 0.00 0.00 32.98 4.16
1405 1583 1.378531 TGTGCGGGCATCTTGTTATC 58.621 50.000 0.00 0.00 0.00 1.75
1407 1585 1.832883 AATGTGCGGGCATCTTGTTA 58.167 45.000 0.00 0.00 0.00 2.41
1413 1591 7.367285 TCTAAAATAATAAATGTGCGGGCATC 58.633 34.615 0.00 0.00 0.00 3.91
1419 1597 8.495949 AGGACGATCTAAAATAATAAATGTGCG 58.504 33.333 0.00 0.00 0.00 5.34
1445 1623 8.435187 AGGAGAACTGAATCTATGCAAATCATA 58.565 33.333 0.00 0.00 36.63 2.15
1507 1685 6.065976 TGGATTTATTCAGAAGCTGAGGAA 57.934 37.500 0.00 0.00 41.75 3.36
1528 1706 3.125829 CACACACGGATCTTTTCAGATGG 59.874 47.826 0.00 0.00 40.14 3.51
1652 1838 8.443176 ACACATATTCAGATTATGGGTTCAGAT 58.557 33.333 12.61 0.00 34.49 2.90
1722 1912 2.939460 GTGGCACAAGTCACTTTTGT 57.061 45.000 13.86 0.00 46.70 2.83
1740 1930 1.953686 CTTGGAACCGAACAATGTGGT 59.046 47.619 0.00 0.00 37.68 4.16
1741 1931 1.269448 CCTTGGAACCGAACAATGTGG 59.731 52.381 0.00 0.00 0.00 4.17
1742 1932 1.953686 ACCTTGGAACCGAACAATGTG 59.046 47.619 0.00 0.00 0.00 3.21
1794 1984 4.319177 GCTCTACAGTTATTGGGGCATAG 58.681 47.826 0.00 0.00 0.00 2.23
1809 1999 4.841443 TTTGACACTAGTTCGCTCTACA 57.159 40.909 0.00 0.00 0.00 2.74
1875 2066 7.598869 GGAATTAAAACACCCAAGAACTTCATC 59.401 37.037 0.00 0.00 0.00 2.92
1881 2072 5.801531 AGGGAATTAAAACACCCAAGAAC 57.198 39.130 0.00 0.00 44.25 3.01
1908 2100 3.492421 AAATATCCTGCACAACAAGCG 57.508 42.857 0.00 0.00 33.85 4.68
1957 2149 4.387026 AGAAAAGATTGACCATCCACCA 57.613 40.909 0.00 0.00 31.20 4.17
1967 2159 5.239306 CACCTTGTGCAGTAGAAAAGATTGA 59.761 40.000 0.00 0.00 0.00 2.57
2032 2224 5.186797 ACTCCAATACAGAGGTGAAGAAGAG 59.813 44.000 0.00 0.00 35.58 2.85
2092 2322 5.061560 TCAAATGAAAAACACAACAGCGTTC 59.938 36.000 0.00 0.00 0.00 3.95
2096 2326 5.351189 AGGTTCAAATGAAAAACACAACAGC 59.649 36.000 0.00 0.00 35.58 4.40
2192 2422 3.168035 ACATTTCTAACCATGTGGGCA 57.832 42.857 3.77 0.00 42.05 5.36
2195 2425 4.380444 CCCGAAACATTTCTAACCATGTGG 60.380 45.833 0.00 0.00 33.76 4.17
2196 2426 4.457603 TCCCGAAACATTTCTAACCATGTG 59.542 41.667 3.04 0.00 33.76 3.21
2202 2432 5.414765 ACAAGGATCCCGAAACATTTCTAAC 59.585 40.000 8.55 0.00 35.07 2.34
2207 2437 2.231235 GCACAAGGATCCCGAAACATTT 59.769 45.455 8.55 0.00 0.00 2.32
2231 2462 1.652947 TTACCCCCTTCTCTCCACAC 58.347 55.000 0.00 0.00 0.00 3.82
2237 2468 4.291249 TGTTTGCTTATTACCCCCTTCTCT 59.709 41.667 0.00 0.00 0.00 3.10
2242 2473 5.546110 ACAATTTGTTTGCTTATTACCCCCT 59.454 36.000 0.00 0.00 39.03 4.79
2312 2546 1.764571 AAACGTGCTCCACAGGCCTA 61.765 55.000 3.98 0.00 37.69 3.93
2314 2548 2.594592 AAACGTGCTCCACAGGCC 60.595 61.111 0.00 0.00 37.69 5.19
2392 2628 2.202878 ATCGGCCACCATTCGTCG 60.203 61.111 2.24 0.00 0.00 5.12
2409 2645 2.045524 GAGAGATCTGGATCCTTGGCA 58.954 52.381 14.23 0.00 38.58 4.92
2467 2703 0.320334 TTGGCTGCGAGTTCGAATGA 60.320 50.000 0.00 0.00 43.02 2.57
2481 2717 2.644798 ACTCCCATAACAGAACTTGGCT 59.355 45.455 0.00 0.00 0.00 4.75
2523 2759 2.748605 CACCGGAGATGAGCTACATTC 58.251 52.381 9.46 0.00 39.56 2.67
2649 2885 3.061322 ACACGCGCATAAAACTTGTAGA 58.939 40.909 5.73 0.00 0.00 2.59
2823 3059 2.307098 AGAAAGATCCTCAACCCACCAG 59.693 50.000 0.00 0.00 0.00 4.00
2970 3206 2.660206 CCGGAATCCCACACGTGA 59.340 61.111 25.01 0.00 0.00 4.35
3093 3329 3.459232 TCAACCTCTATCGCCATTCTG 57.541 47.619 0.00 0.00 0.00 3.02
3126 3362 5.578727 CCTTTTCTCGACTTCAATCCTGTAG 59.421 44.000 0.00 0.00 0.00 2.74
3198 3434 1.291877 ACTCGCTCGTTTGCATGGAC 61.292 55.000 0.00 0.00 0.00 4.02
3255 3491 4.520492 TCCTCAATCCTTTGCAAGAAGTTC 59.480 41.667 0.00 0.00 32.61 3.01
3285 3521 0.969894 AAGGTGACAAGTCTCCCGAG 59.030 55.000 15.53 0.00 42.56 4.63
3450 3686 1.663643 TCAACAATGCGAGCGTAATCC 59.336 47.619 0.00 0.00 0.00 3.01
3535 3771 7.139896 TGCTACATACAACTACCAAAATGTG 57.860 36.000 0.00 0.00 0.00 3.21
3552 3788 7.665559 TCCTACAAATTCAGAAGTTTGCTACAT 59.334 33.333 13.61 2.95 38.54 2.29
3613 3894 9.851686 TTCTGATGGCAAATACATTAGTTAGAT 57.148 29.630 0.00 0.00 34.60 1.98
3619 3900 6.694411 GCTGTTTCTGATGGCAAATACATTAG 59.306 38.462 0.00 0.00 34.37 1.73
3678 3994 9.722056 GGATTCAATGTGAGTATTTGATTGTAC 57.278 33.333 0.00 0.00 0.00 2.90
3679 3995 8.611757 CGGATTCAATGTGAGTATTTGATTGTA 58.388 33.333 0.00 0.00 0.00 2.41
3681 3997 7.696755 TCGGATTCAATGTGAGTATTTGATTG 58.303 34.615 0.00 0.00 0.00 2.67
3682 3998 7.554118 ACTCGGATTCAATGTGAGTATTTGATT 59.446 33.333 0.20 0.00 38.09 2.57
3683 3999 7.011763 CACTCGGATTCAATGTGAGTATTTGAT 59.988 37.037 1.68 0.00 37.79 2.57
3684 4000 6.313658 CACTCGGATTCAATGTGAGTATTTGA 59.686 38.462 1.68 0.00 37.79 2.69
3685 4001 6.092670 ACACTCGGATTCAATGTGAGTATTTG 59.907 38.462 1.68 0.00 37.79 2.32
3686 4002 6.173339 ACACTCGGATTCAATGTGAGTATTT 58.827 36.000 1.68 0.00 37.79 1.40
3689 4005 4.801330 ACACTCGGATTCAATGTGAGTA 57.199 40.909 1.68 0.00 37.79 2.59
3690 4006 3.685139 ACACTCGGATTCAATGTGAGT 57.315 42.857 0.00 0.00 40.35 3.41
3691 4007 4.494484 TGTACACTCGGATTCAATGTGAG 58.506 43.478 0.00 0.00 33.41 3.51
3692 4008 4.494484 CTGTACACTCGGATTCAATGTGA 58.506 43.478 0.00 0.00 33.41 3.58
3693 4009 3.062639 GCTGTACACTCGGATTCAATGTG 59.937 47.826 0.00 0.00 35.09 3.21
3694 4010 3.262420 GCTGTACACTCGGATTCAATGT 58.738 45.455 0.00 0.00 0.00 2.71
3695 4011 3.261580 TGCTGTACACTCGGATTCAATG 58.738 45.455 0.00 0.00 0.00 2.82
3696 4012 3.610040 TGCTGTACACTCGGATTCAAT 57.390 42.857 0.00 0.00 0.00 2.57
3697 4013 3.056179 TCATGCTGTACACTCGGATTCAA 60.056 43.478 0.00 0.00 0.00 2.69
3698 4014 2.495669 TCATGCTGTACACTCGGATTCA 59.504 45.455 0.00 0.00 0.00 2.57
3699 4015 3.165058 TCATGCTGTACACTCGGATTC 57.835 47.619 0.00 0.00 0.00 2.52
3700 4016 3.827008 ATCATGCTGTACACTCGGATT 57.173 42.857 0.00 0.00 0.00 3.01
3701 4017 4.769488 AGATATCATGCTGTACACTCGGAT 59.231 41.667 5.32 0.00 0.00 4.18
3702 4018 4.022849 CAGATATCATGCTGTACACTCGGA 60.023 45.833 5.32 0.00 0.00 4.55
3703 4019 4.233005 CAGATATCATGCTGTACACTCGG 58.767 47.826 5.32 0.00 0.00 4.63
3704 4020 4.864633 ACAGATATCATGCTGTACACTCG 58.135 43.478 5.32 0.00 43.10 4.18
3705 4021 7.208225 TCTACAGATATCATGCTGTACACTC 57.792 40.000 5.32 0.00 43.10 3.51
3706 4022 7.449704 TCATCTACAGATATCATGCTGTACACT 59.550 37.037 5.32 0.00 43.10 3.55
3707 4023 7.597386 TCATCTACAGATATCATGCTGTACAC 58.403 38.462 5.32 0.00 43.10 2.90
3708 4024 7.765695 TCATCTACAGATATCATGCTGTACA 57.234 36.000 5.32 0.00 43.10 2.90
3709 4025 9.481340 TTTTCATCTACAGATATCATGCTGTAC 57.519 33.333 5.32 0.00 43.10 2.90
3711 4027 9.000486 CATTTTCATCTACAGATATCATGCTGT 58.000 33.333 5.32 8.48 46.31 4.40
3712 4028 9.000486 ACATTTTCATCTACAGATATCATGCTG 58.000 33.333 5.32 0.00 38.10 4.41
3713 4029 9.000486 CACATTTTCATCTACAGATATCATGCT 58.000 33.333 5.32 0.00 32.63 3.79
3714 4030 8.996271 TCACATTTTCATCTACAGATATCATGC 58.004 33.333 5.32 0.00 32.63 4.06
3721 4037 9.623000 TTCATCATCACATTTTCATCTACAGAT 57.377 29.630 0.00 0.00 34.56 2.90
3722 4038 8.886719 GTTCATCATCACATTTTCATCTACAGA 58.113 33.333 0.00 0.00 0.00 3.41
3723 4039 8.671028 TGTTCATCATCACATTTTCATCTACAG 58.329 33.333 0.00 0.00 0.00 2.74
3724 4040 8.564509 TGTTCATCATCACATTTTCATCTACA 57.435 30.769 0.00 0.00 0.00 2.74
3725 4041 8.671921 ACTGTTCATCATCACATTTTCATCTAC 58.328 33.333 0.00 0.00 0.00 2.59
3726 4042 8.797350 ACTGTTCATCATCACATTTTCATCTA 57.203 30.769 0.00 0.00 0.00 1.98
3727 4043 7.698506 ACTGTTCATCATCACATTTTCATCT 57.301 32.000 0.00 0.00 0.00 2.90
3728 4044 8.671921 AGTACTGTTCATCATCACATTTTCATC 58.328 33.333 0.00 0.00 0.00 2.92
3729 4045 8.571461 AGTACTGTTCATCATCACATTTTCAT 57.429 30.769 0.00 0.00 0.00 2.57
3730 4046 7.119699 GGAGTACTGTTCATCATCACATTTTCA 59.880 37.037 0.00 0.00 0.00 2.69
3731 4047 7.467623 GGAGTACTGTTCATCATCACATTTTC 58.532 38.462 0.00 0.00 0.00 2.29
3732 4048 6.092670 CGGAGTACTGTTCATCATCACATTTT 59.907 38.462 0.00 0.00 0.00 1.82
3733 4049 5.582269 CGGAGTACTGTTCATCATCACATTT 59.418 40.000 0.00 0.00 0.00 2.32
3734 4050 5.111989 CGGAGTACTGTTCATCATCACATT 58.888 41.667 0.00 0.00 0.00 2.71
3735 4051 4.160439 ACGGAGTACTGTTCATCATCACAT 59.840 41.667 0.00 0.00 41.94 3.21
3736 4052 3.509967 ACGGAGTACTGTTCATCATCACA 59.490 43.478 0.00 0.00 41.94 3.58
3737 4053 4.111375 ACGGAGTACTGTTCATCATCAC 57.889 45.455 0.00 0.00 41.94 3.06
3738 4054 4.801330 AACGGAGTACTGTTCATCATCA 57.199 40.909 0.00 0.00 45.00 3.07
3746 4062 7.116805 CCTTATAAAAACGAACGGAGTACTGTT 59.883 37.037 0.00 0.00 45.00 3.16
3747 4063 6.587608 CCTTATAAAAACGAACGGAGTACTGT 59.412 38.462 0.00 0.00 45.00 3.55
3748 4064 6.454715 GCCTTATAAAAACGAACGGAGTACTG 60.455 42.308 0.00 0.00 45.00 2.74
3749 4065 5.578336 GCCTTATAAAAACGAACGGAGTACT 59.422 40.000 0.00 0.00 45.00 2.73
3750 4066 5.499176 CGCCTTATAAAAACGAACGGAGTAC 60.499 44.000 0.00 0.00 45.00 2.73
3751 4067 4.562394 CGCCTTATAAAAACGAACGGAGTA 59.438 41.667 0.00 0.00 45.00 2.59
3753 4069 3.368843 ACGCCTTATAAAAACGAACGGAG 59.631 43.478 8.05 0.00 0.00 4.63
3754 4070 3.324993 ACGCCTTATAAAAACGAACGGA 58.675 40.909 8.05 0.00 0.00 4.69
3755 4071 3.727780 ACGCCTTATAAAAACGAACGG 57.272 42.857 8.05 0.00 0.00 4.44
3756 4072 5.138788 TCAAACGCCTTATAAAAACGAACG 58.861 37.500 8.05 0.00 0.00 3.95
3757 4073 6.301607 GTCTCAAACGCCTTATAAAAACGAAC 59.698 38.462 8.05 0.00 0.00 3.95
3758 4074 6.018098 TGTCTCAAACGCCTTATAAAAACGAA 60.018 34.615 8.05 0.00 0.00 3.85
3759 4075 5.466058 TGTCTCAAACGCCTTATAAAAACGA 59.534 36.000 8.05 0.00 0.00 3.85
3760 4076 5.681880 TGTCTCAAACGCCTTATAAAAACG 58.318 37.500 1.22 1.22 0.00 3.60
3761 4077 5.567915 GCTGTCTCAAACGCCTTATAAAAAC 59.432 40.000 0.00 0.00 0.00 2.43
3762 4078 5.472137 AGCTGTCTCAAACGCCTTATAAAAA 59.528 36.000 0.00 0.00 0.00 1.94
3763 4079 5.001232 AGCTGTCTCAAACGCCTTATAAAA 58.999 37.500 0.00 0.00 0.00 1.52
3764 4080 4.391830 CAGCTGTCTCAAACGCCTTATAAA 59.608 41.667 5.25 0.00 0.00 1.40
3765 4081 3.932710 CAGCTGTCTCAAACGCCTTATAA 59.067 43.478 5.25 0.00 0.00 0.98
3766 4082 3.194755 TCAGCTGTCTCAAACGCCTTATA 59.805 43.478 14.67 0.00 0.00 0.98
3767 4083 2.028112 TCAGCTGTCTCAAACGCCTTAT 60.028 45.455 14.67 0.00 0.00 1.73
3768 4084 1.343142 TCAGCTGTCTCAAACGCCTTA 59.657 47.619 14.67 0.00 0.00 2.69
3769 4085 0.106708 TCAGCTGTCTCAAACGCCTT 59.893 50.000 14.67 0.00 0.00 4.35
3770 4086 0.320247 CTCAGCTGTCTCAAACGCCT 60.320 55.000 14.67 0.00 0.00 5.52
3771 4087 0.601311 ACTCAGCTGTCTCAAACGCC 60.601 55.000 14.67 0.00 0.00 5.68
3772 4088 1.221414 AACTCAGCTGTCTCAAACGC 58.779 50.000 14.67 0.00 0.00 4.84
3773 4089 2.866156 TCAAACTCAGCTGTCTCAAACG 59.134 45.455 14.67 0.00 0.00 3.60
3774 4090 4.333926 AGTTCAAACTCAGCTGTCTCAAAC 59.666 41.667 14.67 11.99 32.86 2.93
3775 4091 4.333649 CAGTTCAAACTCAGCTGTCTCAAA 59.666 41.667 14.67 0.05 37.08 2.69
3776 4092 3.873361 CAGTTCAAACTCAGCTGTCTCAA 59.127 43.478 14.67 0.00 37.08 3.02
3777 4093 3.118629 ACAGTTCAAACTCAGCTGTCTCA 60.119 43.478 14.67 0.00 37.08 3.27
3778 4094 3.462021 ACAGTTCAAACTCAGCTGTCTC 58.538 45.455 14.67 0.00 37.08 3.36
3779 4095 3.550437 ACAGTTCAAACTCAGCTGTCT 57.450 42.857 14.67 0.00 37.08 3.41
3780 4096 4.622701 AAACAGTTCAAACTCAGCTGTC 57.377 40.909 14.67 0.00 39.19 3.51
3781 4097 5.186198 ACTAAACAGTTCAAACTCAGCTGT 58.814 37.500 14.67 0.00 41.51 4.40
3782 4098 5.741388 ACTAAACAGTTCAAACTCAGCTG 57.259 39.130 7.63 7.63 37.08 4.24
3783 4099 6.258068 GTGTACTAAACAGTTCAAACTCAGCT 59.742 38.462 0.00 0.00 39.29 4.24
3784 4100 6.258068 AGTGTACTAAACAGTTCAAACTCAGC 59.742 38.462 0.00 0.00 38.70 4.26
3785 4101 7.277981 ACAGTGTACTAAACAGTTCAAACTCAG 59.722 37.037 0.00 0.00 39.88 3.35
3786 4102 7.101054 ACAGTGTACTAAACAGTTCAAACTCA 58.899 34.615 0.00 0.00 39.88 3.41
3787 4103 7.491696 AGACAGTGTACTAAACAGTTCAAACTC 59.508 37.037 0.00 0.00 39.88 3.01
3788 4104 7.277981 CAGACAGTGTACTAAACAGTTCAAACT 59.722 37.037 0.00 0.00 39.88 2.66
3789 4105 7.277098 TCAGACAGTGTACTAAACAGTTCAAAC 59.723 37.037 0.00 0.00 39.88 2.93
3790 4106 7.324935 TCAGACAGTGTACTAAACAGTTCAAA 58.675 34.615 0.00 0.00 39.88 2.69
3791 4107 6.869695 TCAGACAGTGTACTAAACAGTTCAA 58.130 36.000 0.00 0.00 39.88 2.69
3792 4108 6.459670 TCAGACAGTGTACTAAACAGTTCA 57.540 37.500 0.00 0.00 39.88 3.18
3793 4109 7.948278 ATTCAGACAGTGTACTAAACAGTTC 57.052 36.000 0.00 0.00 39.88 3.01
3794 4110 8.732746 AAATTCAGACAGTGTACTAAACAGTT 57.267 30.769 0.00 0.00 39.88 3.16
3795 4111 9.257651 GTAAATTCAGACAGTGTACTAAACAGT 57.742 33.333 0.00 0.00 42.76 3.55
3796 4112 9.477484 AGTAAATTCAGACAGTGTACTAAACAG 57.523 33.333 0.00 0.00 39.29 3.16
3802 4118 8.975439 CGTTTTAGTAAATTCAGACAGTGTACT 58.025 33.333 0.00 0.00 0.00 2.73
3803 4119 8.758715 ACGTTTTAGTAAATTCAGACAGTGTAC 58.241 33.333 0.00 0.00 0.00 2.90
3804 4120 8.876275 ACGTTTTAGTAAATTCAGACAGTGTA 57.124 30.769 0.00 0.00 0.00 2.90
3805 4121 7.709613 AGACGTTTTAGTAAATTCAGACAGTGT 59.290 33.333 0.00 0.00 0.00 3.55
3806 4122 8.073355 AGACGTTTTAGTAAATTCAGACAGTG 57.927 34.615 0.00 0.00 0.00 3.66
3807 4123 8.658499 AAGACGTTTTAGTAAATTCAGACAGT 57.342 30.769 0.00 0.00 0.00 3.55
3823 4139 9.367444 CCTCTGTTCACTTATATAAGACGTTTT 57.633 33.333 25.83 2.71 37.08 2.43
3824 4140 7.980099 CCCTCTGTTCACTTATATAAGACGTTT 59.020 37.037 25.83 3.40 37.08 3.60
3825 4141 7.341256 TCCCTCTGTTCACTTATATAAGACGTT 59.659 37.037 25.83 3.75 37.08 3.99
3826 4142 6.832384 TCCCTCTGTTCACTTATATAAGACGT 59.168 38.462 25.83 4.92 37.08 4.34
3827 4143 7.013464 ACTCCCTCTGTTCACTTATATAAGACG 59.987 40.741 25.83 16.70 37.08 4.18
3828 4144 8.240267 ACTCCCTCTGTTCACTTATATAAGAC 57.760 38.462 25.83 15.30 37.08 3.01
3838 4154 9.213777 TGATAAATTATACTCCCTCTGTTCACT 57.786 33.333 0.00 0.00 0.00 3.41
3839 4155 9.832445 TTGATAAATTATACTCCCTCTGTTCAC 57.168 33.333 0.00 0.00 0.00 3.18
3881 4197 3.313526 CCGATCACAATTCCATCAGAACC 59.686 47.826 0.00 0.00 37.29 3.62
3889 4205 1.678728 GCCTGACCGATCACAATTCCA 60.679 52.381 0.00 0.00 0.00 3.53
3890 4206 1.017387 GCCTGACCGATCACAATTCC 58.983 55.000 0.00 0.00 0.00 3.01
3891 4207 1.398390 GTGCCTGACCGATCACAATTC 59.602 52.381 0.00 0.00 0.00 2.17
3894 4210 0.602638 GTGTGCCTGACCGATCACAA 60.603 55.000 0.00 0.00 40.57 3.33
3895 4211 1.005037 GTGTGCCTGACCGATCACA 60.005 57.895 0.00 0.00 37.14 3.58
3903 4262 0.392193 CAGAGATGGGTGTGCCTGAC 60.392 60.000 0.00 0.00 34.45 3.51
4527 4893 8.988934 CACAGTACATACATTCTACAGTGTTTT 58.011 33.333 0.00 0.00 0.00 2.43
4668 5034 0.921347 CATTTTAGAGGCCGACGACG 59.079 55.000 0.00 0.00 39.43 5.12
4694 5060 4.680110 CACTAACCGTGTAGAAGTCAGTTG 59.320 45.833 0.00 0.00 38.84 3.16
4708 5077 9.439500 TTTTATGCTATTTACTTCACTAACCGT 57.561 29.630 0.00 0.00 0.00 4.83
4736 5105 4.133013 TCTAAACCCTTAGAATGCGGTC 57.867 45.455 0.00 0.00 40.48 4.79
4748 5117 1.133730 TGCGGTGGTTTTCTAAACCCT 60.134 47.619 16.40 0.00 39.54 4.34
4751 5120 3.004944 TCCAATGCGGTGGTTTTCTAAAC 59.995 43.478 5.46 0.00 39.88 2.01
4754 5123 2.156098 GTCCAATGCGGTGGTTTTCTA 58.844 47.619 5.46 0.00 39.88 2.10
4784 5153 3.874543 CCATCCATGATCGGTTCGTTTTA 59.125 43.478 0.00 0.00 0.00 1.52
4841 5210 8.297426 GGTACATGATCTAACGATATCTCAACA 58.703 37.037 0.00 0.00 0.00 3.33
4866 5235 8.671384 TTGATCCCTAAGATTTTTATACACGG 57.329 34.615 0.00 0.00 34.42 4.94
4900 5269 2.955660 AGAAAAATTGCAGGTTCGGTCA 59.044 40.909 0.00 0.00 0.00 4.02
4901 5270 3.308530 CAGAAAAATTGCAGGTTCGGTC 58.691 45.455 0.00 0.00 0.00 4.79
4912 5281 2.315901 GCCGAACGACCAGAAAAATTG 58.684 47.619 0.00 0.00 0.00 2.32
4919 5288 3.691342 CAGGGCCGAACGACCAGA 61.691 66.667 0.00 0.00 0.00 3.86
4942 5311 5.772672 AGCTCTCTATACCATAAGGACACAG 59.227 44.000 0.00 0.00 38.69 3.66
4990 5390 4.168101 GGGGATGTATCATGGTAGAGGAA 58.832 47.826 0.00 0.00 0.00 3.36
5000 5400 5.587760 TGTCAATGATGGGGATGTATCAT 57.412 39.130 0.00 0.00 43.79 2.45
5001 5401 5.379187 CTTGTCAATGATGGGGATGTATCA 58.621 41.667 0.00 0.00 37.68 2.15
5003 5403 4.141088 AGCTTGTCAATGATGGGGATGTAT 60.141 41.667 0.00 0.00 0.00 2.29
5004 5404 3.202818 AGCTTGTCAATGATGGGGATGTA 59.797 43.478 0.00 0.00 0.00 2.29
5016 5424 2.034879 CGCGGTGGAGCTTGTCAAT 61.035 57.895 0.00 0.00 34.40 2.57
5017 5425 2.664851 CGCGGTGGAGCTTGTCAA 60.665 61.111 0.00 0.00 34.40 3.18
5034 5442 2.943033 CCCACCATACGAGGAAATTGAC 59.057 50.000 0.00 0.00 0.00 3.18
5035 5443 2.682563 GCCCACCATACGAGGAAATTGA 60.683 50.000 0.00 0.00 0.00 2.57
5071 5479 1.835927 GAGAGCTGGGTGCCTGTTCT 61.836 60.000 0.00 0.00 43.21 3.01
5074 5482 2.203907 AGAGAGCTGGGTGCCTGT 60.204 61.111 0.00 0.00 44.23 4.00
5078 5486 0.174617 GTAGTCAGAGAGCTGGGTGC 59.825 60.000 0.00 0.00 42.53 5.01
5119 5529 1.394917 GTCAGCAAGCATACAAGACGG 59.605 52.381 0.00 0.00 0.00 4.79
5134 5544 1.019805 GGCTTACCGTCCTTGTCAGC 61.020 60.000 0.00 0.00 33.29 4.26
5165 5575 0.107703 CTTGGGCGTGCCAGATCTTA 60.108 55.000 13.76 0.00 37.98 2.10
5174 5597 1.739562 CTGAGAGTCTTGGGCGTGC 60.740 63.158 0.00 0.00 0.00 5.34
5177 5600 0.390472 GAACCTGAGAGTCTTGGGCG 60.390 60.000 14.93 0.00 0.00 6.13
5200 5623 6.912591 CGGTGACATGGAATTAAAGATAAAGC 59.087 38.462 0.00 0.00 0.00 3.51
5210 5633 3.389656 TCATAGCCGGTGACATGGAATTA 59.610 43.478 1.90 0.00 0.00 1.40
5225 5648 2.289945 GGTGACCTGGATCATCATAGCC 60.290 54.545 0.00 0.00 29.46 3.93
5249 5672 1.280746 CACGTCAGCCTTTGTGCAG 59.719 57.895 0.00 0.00 0.00 4.41
5260 5683 2.528743 GCGATCCATGCCACGTCAG 61.529 63.158 0.00 0.00 0.00 3.51
5265 5688 1.270518 ACATCTAGCGATCCATGCCAC 60.271 52.381 0.00 0.00 0.00 5.01
5272 5695 2.230266 GGAGGAGAACATCTAGCGATCC 59.770 54.545 0.00 0.00 0.00 3.36
5306 5729 2.500098 CAAGTAATGTCCTTCCGAGGGA 59.500 50.000 0.00 0.00 43.72 4.20
5311 5734 2.403252 AGGCAAGTAATGTCCTTCCG 57.597 50.000 0.00 0.00 33.46 4.30
5318 5741 3.237268 TGTTGGGAAGGCAAGTAATGT 57.763 42.857 0.00 0.00 0.00 2.71
5324 5747 1.118838 TTGGTTGTTGGGAAGGCAAG 58.881 50.000 0.00 0.00 0.00 4.01
5361 5801 8.950210 CAAATAAAGAGTGGAAGTACATCACAT 58.050 33.333 13.18 2.35 34.17 3.21
5415 5855 3.370527 GGCAACTTCCATTAGCTACCTCA 60.371 47.826 0.00 0.00 0.00 3.86
5473 5913 0.776810 TGGACATGCCAAGGAGGAAA 59.223 50.000 6.42 0.00 45.87 3.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.