Multiple sequence alignment - TraesCS5A01G145400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G145400 chr5A 100.000 2684 0 0 1 2684 321330060 321327377 0.000000e+00 4957
1 TraesCS5A01G145400 chr5A 99.275 276 2 0 1 276 458973759 458973484 1.430000e-137 499
2 TraesCS5A01G145400 chr5A 96.479 284 6 1 1 280 620176580 620176297 1.460000e-127 466
3 TraesCS5A01G145400 chr5A 95.548 292 10 2 1 290 521759767 521760057 5.230000e-127 464
4 TraesCS5A01G145400 chr5B 89.412 2465 119 56 288 2674 271664132 271666532 0.000000e+00 2976
5 TraesCS5A01G145400 chr5B 99.642 279 1 0 1 279 631810940 631811218 6.630000e-141 510
6 TraesCS5A01G145400 chr5D 90.194 2060 114 36 659 2674 233414151 233412136 0.000000e+00 2604
7 TraesCS5A01G145400 chr5D 89.091 385 17 11 288 654 233414583 233414206 3.150000e-124 455
8 TraesCS5A01G145400 chr7A 99.654 289 1 0 1 289 109233678 109233390 1.830000e-146 529
9 TraesCS5A01G145400 chr7A 77.973 513 90 14 1175 1686 251253959 251253469 1.560000e-77 300
10 TraesCS5A01G145400 chr1A 99.650 286 1 0 1 286 253726853 253727138 8.510000e-145 523
11 TraesCS5A01G145400 chr1A 96.207 290 11 0 1 290 304995477 304995766 2.420000e-130 475
12 TraesCS5A01G145400 chr2B 99.286 280 2 0 1 280 13726502 13726781 8.570000e-140 507
13 TraesCS5A01G145400 chr2B 94.186 86 5 0 1594 1679 159331294 159331209 6.030000e-27 132
14 TraesCS5A01G145400 chr3B 98.246 285 3 2 1 284 759808941 759808658 5.160000e-137 497
15 TraesCS5A01G145400 chr7B 77.973 513 90 13 1175 1686 212419020 212418530 1.560000e-77 300
16 TraesCS5A01G145400 chr7D 77.388 513 93 14 1175 1686 236010586 236010096 1.570000e-72 283
17 TraesCS5A01G145400 chr6D 75.340 515 100 19 1175 1686 106080073 106080563 3.480000e-54 222
18 TraesCS5A01G145400 chr6A 75.194 516 99 21 1175 1686 129341046 129341536 1.620000e-52 217
19 TraesCS5A01G145400 chr6B 75.000 516 100 21 1175 1686 192926363 192926853 7.530000e-51 211
20 TraesCS5A01G145400 chr2A 83.146 178 23 1 1461 1631 629998528 629998351 3.580000e-34 156
21 TraesCS5A01G145400 chr4A 82.584 178 24 1 1461 1631 610111068 610110891 1.660000e-32 150
22 TraesCS5A01G145400 chrUn 82.022 178 24 2 1461 1631 74705359 74705535 7.740000e-31 145


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G145400 chr5A 321327377 321330060 2683 True 4957.0 4957 100.0000 1 2684 1 chr5A.!!$R1 2683
1 TraesCS5A01G145400 chr5B 271664132 271666532 2400 False 2976.0 2976 89.4120 288 2674 1 chr5B.!!$F1 2386
2 TraesCS5A01G145400 chr5D 233412136 233414583 2447 True 1529.5 2604 89.6425 288 2674 2 chr5D.!!$R1 2386

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
187 188 0.114364 TTTCCTTCCCCTTTCTGGCC 59.886 55.0 0.0 0.0 0.0 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2124 2226 1.08437 GTGCTTAGGATTCGTGCGCT 61.084 55.0 9.73 0.0 0.0 5.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.919666 ACAGCCGCATATTCAACAAC 57.080 45.000 0.00 0.00 0.00 3.32
20 21 2.158559 ACAGCCGCATATTCAACAACA 58.841 42.857 0.00 0.00 0.00 3.33
21 22 2.556189 ACAGCCGCATATTCAACAACAA 59.444 40.909 0.00 0.00 0.00 2.83
22 23 3.173599 CAGCCGCATATTCAACAACAAG 58.826 45.455 0.00 0.00 0.00 3.16
23 24 2.164219 AGCCGCATATTCAACAACAAGG 59.836 45.455 0.00 0.00 0.00 3.61
24 25 2.529151 CCGCATATTCAACAACAAGGC 58.471 47.619 0.00 0.00 0.00 4.35
25 26 2.094803 CCGCATATTCAACAACAAGGCA 60.095 45.455 0.00 0.00 0.00 4.75
26 27 3.573598 CGCATATTCAACAACAAGGCAA 58.426 40.909 0.00 0.00 0.00 4.52
27 28 3.986572 CGCATATTCAACAACAAGGCAAA 59.013 39.130 0.00 0.00 0.00 3.68
28 29 4.143347 CGCATATTCAACAACAAGGCAAAC 60.143 41.667 0.00 0.00 0.00 2.93
29 30 4.152223 GCATATTCAACAACAAGGCAAACC 59.848 41.667 0.00 0.00 0.00 3.27
30 31 3.902881 ATTCAACAACAAGGCAAACCA 57.097 38.095 0.00 0.00 39.06 3.67
31 32 2.663826 TCAACAACAAGGCAAACCAC 57.336 45.000 0.00 0.00 39.06 4.16
32 33 2.175202 TCAACAACAAGGCAAACCACT 58.825 42.857 0.00 0.00 39.06 4.00
33 34 2.564947 TCAACAACAAGGCAAACCACTT 59.435 40.909 0.00 0.00 39.06 3.16
34 35 2.929398 CAACAACAAGGCAAACCACTTC 59.071 45.455 0.00 0.00 39.06 3.01
35 36 1.480545 ACAACAAGGCAAACCACTTCC 59.519 47.619 0.00 0.00 39.06 3.46
36 37 1.756538 CAACAAGGCAAACCACTTCCT 59.243 47.619 0.00 0.00 39.06 3.36
37 38 1.402787 ACAAGGCAAACCACTTCCTG 58.597 50.000 0.00 0.00 39.06 3.86
38 39 1.064017 ACAAGGCAAACCACTTCCTGA 60.064 47.619 0.00 0.00 39.06 3.86
39 40 2.031120 CAAGGCAAACCACTTCCTGAA 58.969 47.619 0.00 0.00 39.06 3.02
40 41 1.986882 AGGCAAACCACTTCCTGAAG 58.013 50.000 5.37 5.37 43.79 3.02
41 42 0.961753 GGCAAACCACTTCCTGAAGG 59.038 55.000 11.34 0.00 42.53 3.46
42 43 1.692411 GCAAACCACTTCCTGAAGGT 58.308 50.000 11.34 0.00 42.53 3.50
43 44 1.609072 GCAAACCACTTCCTGAAGGTC 59.391 52.381 11.34 0.00 42.53 3.85
44 45 1.873591 CAAACCACTTCCTGAAGGTCG 59.126 52.381 11.34 1.25 42.53 4.79
45 46 0.250338 AACCACTTCCTGAAGGTCGC 60.250 55.000 11.34 0.00 42.53 5.19
46 47 1.122019 ACCACTTCCTGAAGGTCGCT 61.122 55.000 11.34 0.00 42.53 4.93
47 48 0.671781 CCACTTCCTGAAGGTCGCTG 60.672 60.000 11.34 0.61 42.53 5.18
48 49 0.318441 CACTTCCTGAAGGTCGCTGA 59.682 55.000 11.34 0.00 42.53 4.26
49 50 0.605589 ACTTCCTGAAGGTCGCTGAG 59.394 55.000 11.34 0.00 42.53 3.35
50 51 0.891373 CTTCCTGAAGGTCGCTGAGA 59.109 55.000 0.00 0.00 34.87 3.27
51 52 1.273606 CTTCCTGAAGGTCGCTGAGAA 59.726 52.381 0.00 0.00 34.87 2.87
52 53 0.603569 TCCTGAAGGTCGCTGAGAAC 59.396 55.000 0.00 0.00 36.63 3.01
53 54 0.318441 CCTGAAGGTCGCTGAGAACA 59.682 55.000 0.00 0.00 39.61 3.18
54 55 1.066573 CCTGAAGGTCGCTGAGAACAT 60.067 52.381 0.00 0.00 39.61 2.71
55 56 2.613977 CCTGAAGGTCGCTGAGAACATT 60.614 50.000 0.00 0.00 39.61 2.71
56 57 3.368427 CCTGAAGGTCGCTGAGAACATTA 60.368 47.826 0.00 0.00 39.61 1.90
57 58 4.437239 CTGAAGGTCGCTGAGAACATTAT 58.563 43.478 0.00 0.00 39.61 1.28
58 59 4.433615 TGAAGGTCGCTGAGAACATTATC 58.566 43.478 0.00 0.00 39.61 1.75
59 60 4.081697 TGAAGGTCGCTGAGAACATTATCA 60.082 41.667 0.00 0.00 39.61 2.15
60 61 4.471904 AGGTCGCTGAGAACATTATCAA 57.528 40.909 0.00 0.00 39.61 2.57
61 62 5.028549 AGGTCGCTGAGAACATTATCAAT 57.971 39.130 0.00 0.00 39.61 2.57
62 63 4.813161 AGGTCGCTGAGAACATTATCAATG 59.187 41.667 0.00 0.00 44.48 2.82
63 64 4.811024 GGTCGCTGAGAACATTATCAATGA 59.189 41.667 5.92 0.00 41.46 2.57
64 65 5.050499 GGTCGCTGAGAACATTATCAATGAG 60.050 44.000 5.92 0.00 41.46 2.90
65 66 4.509230 TCGCTGAGAACATTATCAATGAGC 59.491 41.667 5.92 3.37 41.46 4.26
66 67 4.510711 CGCTGAGAACATTATCAATGAGCT 59.489 41.667 5.92 0.00 41.46 4.09
67 68 5.558463 CGCTGAGAACATTATCAATGAGCTG 60.558 44.000 5.92 0.00 41.46 4.24
68 69 5.526479 GCTGAGAACATTATCAATGAGCTGA 59.474 40.000 5.92 0.00 41.46 4.26
69 70 6.037940 GCTGAGAACATTATCAATGAGCTGAA 59.962 38.462 5.92 0.00 41.46 3.02
70 71 7.255173 GCTGAGAACATTATCAATGAGCTGAAT 60.255 37.037 5.92 0.00 41.46 2.57
71 72 8.515695 TGAGAACATTATCAATGAGCTGAATT 57.484 30.769 5.92 0.00 41.46 2.17
72 73 8.618677 TGAGAACATTATCAATGAGCTGAATTC 58.381 33.333 5.92 0.00 41.46 2.17
73 74 8.749026 AGAACATTATCAATGAGCTGAATTCT 57.251 30.769 7.05 0.72 41.46 2.40
74 75 9.186837 AGAACATTATCAATGAGCTGAATTCTT 57.813 29.630 7.05 0.00 41.46 2.52
75 76 9.234384 GAACATTATCAATGAGCTGAATTCTTG 57.766 33.333 7.05 1.95 41.46 3.02
76 77 7.713750 ACATTATCAATGAGCTGAATTCTTGG 58.286 34.615 7.05 0.00 41.46 3.61
77 78 7.558807 ACATTATCAATGAGCTGAATTCTTGGA 59.441 33.333 7.05 0.00 41.46 3.53
78 79 7.563888 TTATCAATGAGCTGAATTCTTGGAG 57.436 36.000 7.05 0.00 0.00 3.86
79 80 5.169992 TCAATGAGCTGAATTCTTGGAGA 57.830 39.130 7.05 0.00 0.00 3.71
80 81 5.563592 TCAATGAGCTGAATTCTTGGAGAA 58.436 37.500 7.05 0.00 38.78 2.87
81 82 6.185511 TCAATGAGCTGAATTCTTGGAGAAT 58.814 36.000 7.05 0.00 46.22 2.40
82 83 6.318144 TCAATGAGCTGAATTCTTGGAGAATC 59.682 38.462 7.05 0.00 43.67 2.52
83 84 4.186926 TGAGCTGAATTCTTGGAGAATCG 58.813 43.478 7.05 0.00 43.67 3.34
84 85 2.941720 AGCTGAATTCTTGGAGAATCGC 59.058 45.455 7.05 7.30 43.67 4.58
85 86 2.941720 GCTGAATTCTTGGAGAATCGCT 59.058 45.455 7.05 0.00 43.67 4.93
86 87 3.242673 GCTGAATTCTTGGAGAATCGCTG 60.243 47.826 7.05 5.33 43.67 5.18
87 88 3.273434 TGAATTCTTGGAGAATCGCTGG 58.727 45.455 7.05 0.00 43.67 4.85
88 89 3.055167 TGAATTCTTGGAGAATCGCTGGA 60.055 43.478 7.05 0.00 43.67 3.86
89 90 3.853355 ATTCTTGGAGAATCGCTGGAT 57.147 42.857 0.00 0.00 40.75 3.41
90 91 3.634397 TTCTTGGAGAATCGCTGGATT 57.366 42.857 0.00 0.00 45.43 3.01
99 100 1.673168 ATCGCTGGATTCAAAGGAGC 58.327 50.000 0.00 0.00 0.00 4.70
100 101 0.324614 TCGCTGGATTCAAAGGAGCA 59.675 50.000 0.00 0.00 0.00 4.26
101 102 0.449388 CGCTGGATTCAAAGGAGCAC 59.551 55.000 0.00 0.00 0.00 4.40
102 103 1.538047 GCTGGATTCAAAGGAGCACA 58.462 50.000 0.00 0.00 0.00 4.57
103 104 1.888512 GCTGGATTCAAAGGAGCACAA 59.111 47.619 0.00 0.00 0.00 3.33
104 105 2.494870 GCTGGATTCAAAGGAGCACAAT 59.505 45.455 0.00 0.00 0.00 2.71
105 106 3.675228 GCTGGATTCAAAGGAGCACAATG 60.675 47.826 0.00 0.00 0.00 2.82
106 107 2.827322 TGGATTCAAAGGAGCACAATGG 59.173 45.455 0.00 0.00 0.00 3.16
107 108 3.091545 GGATTCAAAGGAGCACAATGGA 58.908 45.455 0.00 0.00 0.00 3.41
108 109 3.119352 GGATTCAAAGGAGCACAATGGAC 60.119 47.826 0.00 0.00 0.00 4.02
109 110 2.655090 TCAAAGGAGCACAATGGACA 57.345 45.000 0.00 0.00 0.00 4.02
110 111 2.507484 TCAAAGGAGCACAATGGACAG 58.493 47.619 0.00 0.00 0.00 3.51
111 112 1.542915 CAAAGGAGCACAATGGACAGG 59.457 52.381 0.00 0.00 0.00 4.00
112 113 0.610232 AAGGAGCACAATGGACAGGC 60.610 55.000 0.00 0.00 0.00 4.85
113 114 2.401766 GGAGCACAATGGACAGGCG 61.402 63.158 0.00 0.00 0.00 5.52
114 115 3.044059 GAGCACAATGGACAGGCGC 62.044 63.158 0.00 0.00 0.00 6.53
115 116 4.465512 GCACAATGGACAGGCGCG 62.466 66.667 0.00 0.00 0.00 6.86
116 117 2.741985 CACAATGGACAGGCGCGA 60.742 61.111 12.10 0.00 0.00 5.87
117 118 2.434884 ACAATGGACAGGCGCGAG 60.435 61.111 12.10 0.01 0.00 5.03
118 119 2.125552 CAATGGACAGGCGCGAGA 60.126 61.111 12.10 0.00 0.00 4.04
119 120 1.522355 CAATGGACAGGCGCGAGAT 60.522 57.895 12.10 0.00 0.00 2.75
120 121 0.249447 CAATGGACAGGCGCGAGATA 60.249 55.000 12.10 0.00 0.00 1.98
121 122 0.464036 AATGGACAGGCGCGAGATAA 59.536 50.000 12.10 0.00 0.00 1.75
122 123 0.681733 ATGGACAGGCGCGAGATAAT 59.318 50.000 12.10 0.00 0.00 1.28
123 124 0.464036 TGGACAGGCGCGAGATAATT 59.536 50.000 12.10 0.00 0.00 1.40
124 125 1.134521 TGGACAGGCGCGAGATAATTT 60.135 47.619 12.10 0.00 0.00 1.82
125 126 1.527311 GGACAGGCGCGAGATAATTTC 59.473 52.381 12.10 0.00 0.00 2.17
126 127 2.474816 GACAGGCGCGAGATAATTTCT 58.525 47.619 12.10 0.00 37.41 2.52
127 128 2.866762 GACAGGCGCGAGATAATTTCTT 59.133 45.455 12.10 0.00 33.74 2.52
128 129 3.270877 ACAGGCGCGAGATAATTTCTTT 58.729 40.909 12.10 0.00 33.74 2.52
129 130 3.309954 ACAGGCGCGAGATAATTTCTTTC 59.690 43.478 12.10 0.00 33.74 2.62
130 131 3.557595 CAGGCGCGAGATAATTTCTTTCT 59.442 43.478 12.10 0.00 33.74 2.52
131 132 4.034510 CAGGCGCGAGATAATTTCTTTCTT 59.965 41.667 12.10 0.00 33.74 2.52
132 133 4.636206 AGGCGCGAGATAATTTCTTTCTTT 59.364 37.500 12.10 0.00 33.74 2.52
133 134 4.964555 GGCGCGAGATAATTTCTTTCTTTC 59.035 41.667 12.10 0.00 33.74 2.62
134 135 5.220681 GGCGCGAGATAATTTCTTTCTTTCT 60.221 40.000 12.10 0.00 33.74 2.52
135 136 6.251549 GCGCGAGATAATTTCTTTCTTTCTT 58.748 36.000 12.10 0.00 33.74 2.52
136 137 6.743172 GCGCGAGATAATTTCTTTCTTTCTTT 59.257 34.615 12.10 0.00 33.74 2.52
137 138 7.045290 GCGCGAGATAATTTCTTTCTTTCTTTC 60.045 37.037 12.10 0.00 33.74 2.62
138 139 8.171840 CGCGAGATAATTTCTTTCTTTCTTTCT 58.828 33.333 0.00 0.00 33.74 2.52
139 140 9.833182 GCGAGATAATTTCTTTCTTTCTTTCTT 57.167 29.630 0.00 0.00 33.74 2.52
172 173 9.595823 TCTAGTGTACATTTGTATAGCTTTTCC 57.404 33.333 0.00 0.00 32.54 3.13
173 174 9.601217 CTAGTGTACATTTGTATAGCTTTTCCT 57.399 33.333 0.00 0.00 32.54 3.36
174 175 8.863872 AGTGTACATTTGTATAGCTTTTCCTT 57.136 30.769 0.00 0.00 32.54 3.36
175 176 8.947115 AGTGTACATTTGTATAGCTTTTCCTTC 58.053 33.333 0.00 0.00 32.54 3.46
176 177 8.182227 GTGTACATTTGTATAGCTTTTCCTTCC 58.818 37.037 0.00 0.00 32.54 3.46
177 178 6.775594 ACATTTGTATAGCTTTTCCTTCCC 57.224 37.500 0.00 0.00 0.00 3.97
178 179 5.656859 ACATTTGTATAGCTTTTCCTTCCCC 59.343 40.000 0.00 0.00 0.00 4.81
179 180 5.530176 TTTGTATAGCTTTTCCTTCCCCT 57.470 39.130 0.00 0.00 0.00 4.79
180 181 5.530176 TTGTATAGCTTTTCCTTCCCCTT 57.470 39.130 0.00 0.00 0.00 3.95
181 182 5.530176 TGTATAGCTTTTCCTTCCCCTTT 57.470 39.130 0.00 0.00 0.00 3.11
182 183 5.506708 TGTATAGCTTTTCCTTCCCCTTTC 58.493 41.667 0.00 0.00 0.00 2.62
183 184 4.955693 ATAGCTTTTCCTTCCCCTTTCT 57.044 40.909 0.00 0.00 0.00 2.52
184 185 2.881734 AGCTTTTCCTTCCCCTTTCTG 58.118 47.619 0.00 0.00 0.00 3.02
185 186 1.895798 GCTTTTCCTTCCCCTTTCTGG 59.104 52.381 0.00 0.00 0.00 3.86
186 187 1.895798 CTTTTCCTTCCCCTTTCTGGC 59.104 52.381 0.00 0.00 0.00 4.85
187 188 0.114364 TTTCCTTCCCCTTTCTGGCC 59.886 55.000 0.00 0.00 0.00 5.36
188 189 0.776080 TTCCTTCCCCTTTCTGGCCT 60.776 55.000 3.32 0.00 0.00 5.19
189 190 0.776080 TCCTTCCCCTTTCTGGCCTT 60.776 55.000 3.32 0.00 0.00 4.35
190 191 0.323816 CCTTCCCCTTTCTGGCCTTC 60.324 60.000 3.32 0.00 0.00 3.46
191 192 0.405585 CTTCCCCTTTCTGGCCTTCA 59.594 55.000 3.32 0.00 0.00 3.02
192 193 0.405585 TTCCCCTTTCTGGCCTTCAG 59.594 55.000 3.32 0.00 44.68 3.02
193 194 1.680314 CCCCTTTCTGGCCTTCAGC 60.680 63.158 3.32 0.00 43.06 4.26
207 208 3.972227 CAGCCGTCCTGAACCTTG 58.028 61.111 0.00 0.00 44.64 3.61
208 209 1.371183 CAGCCGTCCTGAACCTTGA 59.629 57.895 0.00 0.00 44.64 3.02
209 210 0.951040 CAGCCGTCCTGAACCTTGAC 60.951 60.000 0.00 0.00 44.64 3.18
210 211 1.070786 GCCGTCCTGAACCTTGACA 59.929 57.895 0.00 0.00 0.00 3.58
211 212 0.321653 GCCGTCCTGAACCTTGACAT 60.322 55.000 0.00 0.00 0.00 3.06
212 213 1.442769 CCGTCCTGAACCTTGACATG 58.557 55.000 0.00 0.00 0.00 3.21
213 214 1.270839 CCGTCCTGAACCTTGACATGT 60.271 52.381 0.00 0.00 0.00 3.21
214 215 2.028476 CCGTCCTGAACCTTGACATGTA 60.028 50.000 0.00 0.00 0.00 2.29
215 216 3.369471 CCGTCCTGAACCTTGACATGTAT 60.369 47.826 0.00 0.00 0.00 2.29
216 217 4.253685 CGTCCTGAACCTTGACATGTATT 58.746 43.478 0.00 0.00 0.00 1.89
217 218 4.695455 CGTCCTGAACCTTGACATGTATTT 59.305 41.667 0.00 0.00 0.00 1.40
218 219 5.163854 CGTCCTGAACCTTGACATGTATTTC 60.164 44.000 0.00 0.00 0.00 2.17
219 220 5.940470 GTCCTGAACCTTGACATGTATTTCT 59.060 40.000 0.00 0.00 0.00 2.52
220 221 6.431234 GTCCTGAACCTTGACATGTATTTCTT 59.569 38.462 0.00 0.00 0.00 2.52
221 222 6.430925 TCCTGAACCTTGACATGTATTTCTTG 59.569 38.462 0.00 0.00 0.00 3.02
222 223 6.349611 CCTGAACCTTGACATGTATTTCTTGG 60.350 42.308 0.00 0.00 0.00 3.61
223 224 5.476599 TGAACCTTGACATGTATTTCTTGGG 59.523 40.000 0.00 0.00 0.00 4.12
224 225 4.344104 ACCTTGACATGTATTTCTTGGGG 58.656 43.478 0.00 0.00 0.00 4.96
225 226 4.202673 ACCTTGACATGTATTTCTTGGGGT 60.203 41.667 0.00 0.00 0.00 4.95
226 227 4.158394 CCTTGACATGTATTTCTTGGGGTG 59.842 45.833 0.00 0.00 0.00 4.61
227 228 4.380843 TGACATGTATTTCTTGGGGTGT 57.619 40.909 0.00 0.00 0.00 4.16
228 229 4.331968 TGACATGTATTTCTTGGGGTGTC 58.668 43.478 0.00 0.00 36.26 3.67
229 230 4.042809 TGACATGTATTTCTTGGGGTGTCT 59.957 41.667 0.00 0.00 36.57 3.41
230 231 4.589908 ACATGTATTTCTTGGGGTGTCTC 58.410 43.478 0.00 0.00 0.00 3.36
231 232 4.042809 ACATGTATTTCTTGGGGTGTCTCA 59.957 41.667 0.00 0.00 0.00 3.27
232 233 4.927267 TGTATTTCTTGGGGTGTCTCAT 57.073 40.909 0.00 0.00 0.00 2.90
233 234 4.843728 TGTATTTCTTGGGGTGTCTCATC 58.156 43.478 0.00 0.00 0.00 2.92
234 235 2.879103 TTTCTTGGGGTGTCTCATCC 57.121 50.000 0.00 0.00 33.05 3.51
235 236 2.044793 TTCTTGGGGTGTCTCATCCT 57.955 50.000 0.00 0.00 34.53 3.24
236 237 2.940514 TCTTGGGGTGTCTCATCCTA 57.059 50.000 0.00 0.00 34.53 2.94
237 238 3.421394 TCTTGGGGTGTCTCATCCTAT 57.579 47.619 0.00 0.00 34.53 2.57
238 239 3.309296 TCTTGGGGTGTCTCATCCTATC 58.691 50.000 0.00 0.00 34.53 2.08
239 240 3.051803 TCTTGGGGTGTCTCATCCTATCT 60.052 47.826 0.00 0.00 34.53 1.98
240 241 3.421394 TGGGGTGTCTCATCCTATCTT 57.579 47.619 0.00 0.00 34.53 2.40
241 242 4.552883 TGGGGTGTCTCATCCTATCTTA 57.447 45.455 0.00 0.00 34.53 2.10
242 243 4.890988 TGGGGTGTCTCATCCTATCTTAA 58.109 43.478 0.00 0.00 34.53 1.85
243 244 5.476983 TGGGGTGTCTCATCCTATCTTAAT 58.523 41.667 0.00 0.00 34.53 1.40
244 245 5.307976 TGGGGTGTCTCATCCTATCTTAATG 59.692 44.000 0.00 0.00 34.53 1.90
245 246 5.544176 GGGGTGTCTCATCCTATCTTAATGA 59.456 44.000 0.00 0.00 34.53 2.57
246 247 6.043243 GGGGTGTCTCATCCTATCTTAATGAA 59.957 42.308 0.00 0.00 34.53 2.57
247 248 7.256835 GGGGTGTCTCATCCTATCTTAATGAAT 60.257 40.741 0.00 0.00 34.53 2.57
248 249 7.605691 GGGTGTCTCATCCTATCTTAATGAATG 59.394 40.741 0.00 0.00 30.73 2.67
249 250 8.370940 GGTGTCTCATCCTATCTTAATGAATGA 58.629 37.037 0.00 0.00 0.00 2.57
250 251 9.770097 GTGTCTCATCCTATCTTAATGAATGAA 57.230 33.333 0.00 0.00 0.00 2.57
257 258 9.803507 ATCCTATCTTAATGAATGAAATCAGCA 57.196 29.630 0.00 0.00 31.76 4.41
258 259 9.060347 TCCTATCTTAATGAATGAAATCAGCAC 57.940 33.333 0.00 0.00 31.76 4.40
259 260 8.843262 CCTATCTTAATGAATGAAATCAGCACA 58.157 33.333 0.00 0.00 31.76 4.57
262 263 8.920509 TCTTAATGAATGAAATCAGCACAATG 57.079 30.769 0.00 0.00 31.76 2.82
263 264 7.490079 TCTTAATGAATGAAATCAGCACAATGC 59.510 33.333 0.00 0.00 45.46 3.56
275 276 2.458951 GCACAATGCTGTTTTTCGTCA 58.541 42.857 0.00 0.00 40.96 4.35
276 277 2.857152 GCACAATGCTGTTTTTCGTCAA 59.143 40.909 0.00 0.00 40.96 3.18
277 278 3.305629 GCACAATGCTGTTTTTCGTCAAA 59.694 39.130 0.00 0.00 40.96 2.69
278 279 4.201666 GCACAATGCTGTTTTTCGTCAAAA 60.202 37.500 0.00 0.00 40.96 2.44
279 280 5.669848 GCACAATGCTGTTTTTCGTCAAAAA 60.670 36.000 0.00 0.00 40.96 1.94
393 400 1.437160 CCAAAGCGCGGCCATTTAT 59.563 52.632 8.83 0.00 0.00 1.40
402 409 1.675552 CGGCCATTTATTTCGTCCCT 58.324 50.000 2.24 0.00 0.00 4.20
423 430 4.473520 CAGCCCTGCGTAGTGGGG 62.474 72.222 9.40 1.54 42.06 4.96
504 511 4.329545 GGCGAGCCAACCCTGTGA 62.330 66.667 9.58 0.00 35.81 3.58
508 515 0.606401 CGAGCCAACCCTGTGATGTT 60.606 55.000 0.00 0.00 0.00 2.71
510 517 0.251341 AGCCAACCCTGTGATGTTCC 60.251 55.000 0.00 0.00 0.00 3.62
511 518 1.250840 GCCAACCCTGTGATGTTCCC 61.251 60.000 0.00 0.00 0.00 3.97
512 519 0.960364 CCAACCCTGTGATGTTCCCG 60.960 60.000 0.00 0.00 0.00 5.14
513 520 0.250727 CAACCCTGTGATGTTCCCGT 60.251 55.000 0.00 0.00 0.00 5.28
554 562 0.608035 CAGCCATACACCCAACCGTT 60.608 55.000 0.00 0.00 0.00 4.44
555 563 0.608035 AGCCATACACCCAACCGTTG 60.608 55.000 4.12 4.12 0.00 4.10
671 744 4.177026 GTGTAGAATCACTAGGCTGTGTG 58.823 47.826 13.84 13.84 38.90 3.82
726 801 3.243267 ACGCGTGCTGTAAAAGGAAAATT 60.243 39.130 12.93 0.00 0.00 1.82
729 804 6.128227 ACGCGTGCTGTAAAAGGAAAATTATA 60.128 34.615 12.93 0.00 0.00 0.98
730 805 6.743627 CGCGTGCTGTAAAAGGAAAATTATAA 59.256 34.615 0.00 0.00 0.00 0.98
731 806 7.253190 CGCGTGCTGTAAAAGGAAAATTATAAC 60.253 37.037 0.00 0.00 0.00 1.89
913 990 3.672241 CGGAAAATCGAATCAAACCACCC 60.672 47.826 0.00 0.00 0.00 4.61
989 1078 3.157252 TCTCAGCATCCCGAGCCC 61.157 66.667 0.00 0.00 0.00 5.19
1025 1114 3.118454 CACCAACGGCTACGGCAG 61.118 66.667 0.00 0.00 46.48 4.85
1162 1251 2.675423 CCGTCACCCTCGTCCTCA 60.675 66.667 0.00 0.00 0.00 3.86
1173 1262 2.579787 GTCCTCATCGCCGTCGTG 60.580 66.667 0.00 0.00 36.96 4.35
1306 1395 1.816863 GCTCAACGTCACCCTCCTCA 61.817 60.000 0.00 0.00 0.00 3.86
1354 1443 1.616628 GCCTCCTTCTCCTTCCCCA 60.617 63.158 0.00 0.00 0.00 4.96
1662 1751 4.008933 GTCCGCAGCCAGGAGTGT 62.009 66.667 0.00 0.00 38.65 3.55
1688 1777 1.406614 CCACACCAAGCTCTGATCCTC 60.407 57.143 0.00 0.00 0.00 3.71
1691 1780 0.985490 ACCAAGCTCTGATCCTCCCC 60.985 60.000 0.00 0.00 0.00 4.81
1692 1781 0.693767 CCAAGCTCTGATCCTCCCCT 60.694 60.000 0.00 0.00 0.00 4.79
1693 1782 1.211456 CAAGCTCTGATCCTCCCCTT 58.789 55.000 0.00 0.00 0.00 3.95
1695 1784 0.758685 AGCTCTGATCCTCCCCTTCG 60.759 60.000 0.00 0.00 0.00 3.79
1700 1795 0.535335 TGATCCTCCCCTTCGTTTCG 59.465 55.000 0.00 0.00 0.00 3.46
1702 1797 0.535797 ATCCTCCCCTTCGTTTCGTC 59.464 55.000 0.00 0.00 0.00 4.20
1713 1808 4.705519 TTTCGTCCGTCCGTCCGC 62.706 66.667 0.00 0.00 0.00 5.54
1771 1866 1.152567 AGATGGAGGCGAGGAGGAG 60.153 63.158 0.00 0.00 0.00 3.69
1860 1955 3.944055 TCACGGAGAGAAGAGAAAAGG 57.056 47.619 0.00 0.00 0.00 3.11
1884 1979 3.181449 TGAGGTGTTTCTGGAATTTCCGA 60.181 43.478 10.79 8.15 40.17 4.55
1885 1980 4.010349 GAGGTGTTTCTGGAATTTCCGAT 58.990 43.478 10.79 0.00 40.17 4.18
1907 2002 5.413969 TGACGCTTCATCATCATTTCATC 57.586 39.130 0.00 0.00 0.00 2.92
1909 2004 5.007332 TGACGCTTCATCATCATTTCATCAG 59.993 40.000 0.00 0.00 0.00 2.90
1910 2005 4.880120 ACGCTTCATCATCATTTCATCAGT 59.120 37.500 0.00 0.00 0.00 3.41
1911 2006 6.051074 ACGCTTCATCATCATTTCATCAGTA 58.949 36.000 0.00 0.00 0.00 2.74
1912 2007 6.709397 ACGCTTCATCATCATTTCATCAGTAT 59.291 34.615 0.00 0.00 0.00 2.12
1913 2008 7.874528 ACGCTTCATCATCATTTCATCAGTATA 59.125 33.333 0.00 0.00 0.00 1.47
1914 2009 8.381387 CGCTTCATCATCATTTCATCAGTATAG 58.619 37.037 0.00 0.00 0.00 1.31
1915 2010 9.217278 GCTTCATCATCATTTCATCAGTATAGT 57.783 33.333 0.00 0.00 0.00 2.12
1964 2061 5.656859 GGCCTTGGGTAGAATTAATTTGTCT 59.343 40.000 1.43 0.00 0.00 3.41
1980 2077 9.528018 TTAATTTGTCTTTTTAGCTGTTTCCAG 57.472 29.630 0.00 0.00 41.91 3.86
2040 2142 0.188587 ACAGAGACAGACAGGGTGGA 59.811 55.000 0.00 0.00 0.00 4.02
2041 2143 1.203237 ACAGAGACAGACAGGGTGGAT 60.203 52.381 0.00 0.00 0.00 3.41
2043 2145 1.905215 AGAGACAGACAGGGTGGATTG 59.095 52.381 0.00 0.00 0.00 2.67
2044 2146 1.902508 GAGACAGACAGGGTGGATTGA 59.097 52.381 0.00 0.00 0.00 2.57
2063 2165 9.031537 TGGATTGATTAGTATACACGGATATGT 57.968 33.333 5.50 0.00 36.56 2.29
2094 2196 8.967664 TCTTATTGTTCATCACATCATCATCA 57.032 30.769 0.00 0.00 34.43 3.07
2095 2197 9.569122 TCTTATTGTTCATCACATCATCATCAT 57.431 29.630 0.00 0.00 34.43 2.45
2096 2198 9.827411 CTTATTGTTCATCACATCATCATCATC 57.173 33.333 0.00 0.00 34.43 2.92
2097 2199 7.817418 ATTGTTCATCACATCATCATCATCA 57.183 32.000 0.00 0.00 34.43 3.07
2098 2200 6.613755 TGTTCATCACATCATCATCATCAC 57.386 37.500 0.00 0.00 0.00 3.06
2099 2201 6.116806 TGTTCATCACATCATCATCATCACA 58.883 36.000 0.00 0.00 0.00 3.58
2100 2202 6.770785 TGTTCATCACATCATCATCATCACAT 59.229 34.615 0.00 0.00 0.00 3.21
2101 2203 7.041372 TGTTCATCACATCATCATCATCACATC 60.041 37.037 0.00 0.00 0.00 3.06
2124 2226 6.466812 TCATGTGTCTAGATTCTTGCTTTGA 58.533 36.000 0.00 0.00 0.00 2.69
2145 2247 0.800683 CGCACGAATCCTAAGCACGA 60.801 55.000 0.00 0.00 0.00 4.35
2153 2255 1.112113 TCCTAAGCACGACCTCATCC 58.888 55.000 0.00 0.00 0.00 3.51
2192 2306 2.047560 GCTGTTACGGGGTCGCTT 60.048 61.111 0.00 0.00 40.63 4.68
2193 2307 2.098831 GCTGTTACGGGGTCGCTTC 61.099 63.158 0.00 0.00 40.63 3.86
2197 2311 2.703798 TTACGGGGTCGCTTCGAGG 61.704 63.158 0.00 0.00 40.63 4.63
2204 2318 3.771160 TCGCTTCGAGGCCTTCCC 61.771 66.667 14.49 0.00 0.00 3.97
2217 2331 0.462759 CCTTCCCCGAGCACTTGATC 60.463 60.000 0.00 0.00 0.00 2.92
2218 2332 0.462759 CTTCCCCGAGCACTTGATCC 60.463 60.000 0.00 0.00 0.00 3.36
2231 2345 5.068987 AGCACTTGATCCTCTGATTACTCTC 59.931 44.000 0.00 0.00 0.00 3.20
2232 2346 5.068987 GCACTTGATCCTCTGATTACTCTCT 59.931 44.000 0.00 0.00 0.00 3.10
2258 2372 6.901081 ATATAATCCTTAAAGCCAAGCCAC 57.099 37.500 0.00 0.00 0.00 5.01
2259 2373 1.852633 ATCCTTAAAGCCAAGCCACC 58.147 50.000 0.00 0.00 0.00 4.61
2260 2374 0.777446 TCCTTAAAGCCAAGCCACCT 59.223 50.000 0.00 0.00 0.00 4.00
2261 2375 0.890683 CCTTAAAGCCAAGCCACCTG 59.109 55.000 0.00 0.00 0.00 4.00
2262 2376 1.620822 CTTAAAGCCAAGCCACCTGT 58.379 50.000 0.00 0.00 0.00 4.00
2337 2476 5.273170 CACCAAATATGTCGGCAAATACAG 58.727 41.667 0.00 0.00 0.00 2.74
2372 2513 5.200368 AGCAGTGAAAAATAAACCCTGTG 57.800 39.130 0.00 0.00 0.00 3.66
2374 2515 4.744631 GCAGTGAAAAATAAACCCTGTGTG 59.255 41.667 0.00 0.00 0.00 3.82
2382 2523 5.578157 AATAAACCCTGTGTGTAGTCCTT 57.422 39.130 0.00 0.00 0.00 3.36
2417 2558 1.271379 TGAAAGCTCCCCTTTTCCTCG 60.271 52.381 0.00 0.00 43.64 4.63
2419 2560 2.804828 AAGCTCCCCTTTTCCTCGCG 62.805 60.000 0.00 0.00 0.00 5.87
2436 2577 0.240145 GCGAAGGGAACGAAAAAGGG 59.760 55.000 0.00 0.00 0.00 3.95
2445 2586 4.082408 GGGAACGAAAAAGGGTATCAAAGG 60.082 45.833 0.00 0.00 0.00 3.11
2448 2589 3.892588 ACGAAAAAGGGTATCAAAGGCAA 59.107 39.130 0.00 0.00 0.00 4.52
2479 2620 1.153086 GCCGTCAGCCAATCCATCT 60.153 57.895 0.00 0.00 34.35 2.90
2525 2666 0.035630 ACAGGAAGAGCAGCCATCAC 60.036 55.000 0.00 0.00 0.00 3.06
2527 2668 1.483827 CAGGAAGAGCAGCCATCACTA 59.516 52.381 0.00 0.00 0.00 2.74
2588 2729 2.554032 ACAGCTCAGCACAATTAACACC 59.446 45.455 0.00 0.00 0.00 4.16
2601 2745 0.393448 TAACACCAGTACGCCAGCAA 59.607 50.000 0.00 0.00 0.00 3.91
2629 2773 0.179032 ACACCAGTCGCATCAAACCA 60.179 50.000 0.00 0.00 0.00 3.67
2630 2774 0.950836 CACCAGTCGCATCAAACCAA 59.049 50.000 0.00 0.00 0.00 3.67
2631 2775 1.069022 CACCAGTCGCATCAAACCAAG 60.069 52.381 0.00 0.00 0.00 3.61
2632 2776 0.109597 CCAGTCGCATCAAACCAAGC 60.110 55.000 0.00 0.00 0.00 4.01
2633 2777 0.109597 CAGTCGCATCAAACCAAGCC 60.110 55.000 0.00 0.00 0.00 4.35
2647 2796 0.813184 CAAGCCAAGCCATGTTCGAT 59.187 50.000 0.00 0.00 0.00 3.59
2674 2823 2.226200 CACTGCATCATTTCGGTGTCAA 59.774 45.455 0.00 0.00 35.45 3.18
2675 2824 2.485426 ACTGCATCATTTCGGTGTCAAG 59.515 45.455 0.00 0.00 0.00 3.02
2676 2825 1.811965 TGCATCATTTCGGTGTCAAGG 59.188 47.619 0.00 0.00 0.00 3.61
2677 2826 1.812571 GCATCATTTCGGTGTCAAGGT 59.187 47.619 0.00 0.00 0.00 3.50
2678 2827 2.414559 GCATCATTTCGGTGTCAAGGTG 60.415 50.000 0.00 0.00 0.00 4.00
2679 2828 1.234821 TCATTTCGGTGTCAAGGTGC 58.765 50.000 0.00 0.00 0.00 5.01
2680 2829 0.950836 CATTTCGGTGTCAAGGTGCA 59.049 50.000 0.00 0.00 0.00 4.57
2681 2830 1.336440 CATTTCGGTGTCAAGGTGCAA 59.664 47.619 0.00 0.00 0.00 4.08
2682 2831 1.464734 TTTCGGTGTCAAGGTGCAAA 58.535 45.000 0.00 0.00 0.00 3.68
2683 2832 1.021202 TTCGGTGTCAAGGTGCAAAG 58.979 50.000 0.00 0.00 0.00 2.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.158559 TGTTGTTGAATATGCGGCTGT 58.841 42.857 0.00 0.00 0.00 4.40
1 2 2.917701 TGTTGTTGAATATGCGGCTG 57.082 45.000 0.00 0.00 0.00 4.85
2 3 2.164219 CCTTGTTGTTGAATATGCGGCT 59.836 45.455 0.00 0.00 0.00 5.52
3 4 2.529151 CCTTGTTGTTGAATATGCGGC 58.471 47.619 0.00 0.00 0.00 6.53
4 5 2.094803 TGCCTTGTTGTTGAATATGCGG 60.095 45.455 0.00 0.00 0.00 5.69
5 6 3.214697 TGCCTTGTTGTTGAATATGCG 57.785 42.857 0.00 0.00 0.00 4.73
6 7 4.152223 GGTTTGCCTTGTTGTTGAATATGC 59.848 41.667 0.00 0.00 0.00 3.14
7 8 5.177327 GTGGTTTGCCTTGTTGTTGAATATG 59.823 40.000 0.00 0.00 35.27 1.78
8 9 5.070313 AGTGGTTTGCCTTGTTGTTGAATAT 59.930 36.000 0.00 0.00 35.27 1.28
9 10 4.404073 AGTGGTTTGCCTTGTTGTTGAATA 59.596 37.500 0.00 0.00 35.27 1.75
10 11 3.197549 AGTGGTTTGCCTTGTTGTTGAAT 59.802 39.130 0.00 0.00 35.27 2.57
11 12 2.564947 AGTGGTTTGCCTTGTTGTTGAA 59.435 40.909 0.00 0.00 35.27 2.69
12 13 2.175202 AGTGGTTTGCCTTGTTGTTGA 58.825 42.857 0.00 0.00 35.27 3.18
13 14 2.671130 AGTGGTTTGCCTTGTTGTTG 57.329 45.000 0.00 0.00 35.27 3.33
14 15 2.093711 GGAAGTGGTTTGCCTTGTTGTT 60.094 45.455 0.00 0.00 35.27 2.83
15 16 1.480545 GGAAGTGGTTTGCCTTGTTGT 59.519 47.619 0.00 0.00 35.27 3.32
16 17 1.756538 AGGAAGTGGTTTGCCTTGTTG 59.243 47.619 0.00 0.00 35.27 3.33
17 18 1.756538 CAGGAAGTGGTTTGCCTTGTT 59.243 47.619 0.00 0.00 35.27 2.83
18 19 1.064017 TCAGGAAGTGGTTTGCCTTGT 60.064 47.619 0.00 0.00 35.27 3.16
19 20 1.691196 TCAGGAAGTGGTTTGCCTTG 58.309 50.000 0.00 0.00 35.27 3.61
20 21 2.310538 CTTCAGGAAGTGGTTTGCCTT 58.689 47.619 0.83 0.00 33.87 4.35
21 22 1.479389 CCTTCAGGAAGTGGTTTGCCT 60.479 52.381 8.14 0.00 36.72 4.75
22 23 0.961753 CCTTCAGGAAGTGGTTTGCC 59.038 55.000 8.14 0.00 36.72 4.52
23 24 1.609072 GACCTTCAGGAAGTGGTTTGC 59.391 52.381 8.14 0.00 38.94 3.68
24 25 1.873591 CGACCTTCAGGAAGTGGTTTG 59.126 52.381 8.14 0.00 38.94 2.93
25 26 1.814248 GCGACCTTCAGGAAGTGGTTT 60.814 52.381 8.14 0.00 38.94 3.27
26 27 0.250338 GCGACCTTCAGGAAGTGGTT 60.250 55.000 8.14 0.00 38.94 3.67
27 28 1.122019 AGCGACCTTCAGGAAGTGGT 61.122 55.000 8.14 0.90 38.94 4.16
28 29 0.671781 CAGCGACCTTCAGGAAGTGG 60.672 60.000 8.14 0.00 38.94 4.00
29 30 0.318441 TCAGCGACCTTCAGGAAGTG 59.682 55.000 8.14 2.89 38.94 3.16
30 31 0.605589 CTCAGCGACCTTCAGGAAGT 59.394 55.000 8.14 0.00 38.94 3.01
31 32 0.891373 TCTCAGCGACCTTCAGGAAG 59.109 55.000 0.00 2.01 38.94 3.46
32 33 1.000955 GTTCTCAGCGACCTTCAGGAA 59.999 52.381 0.00 0.00 38.94 3.36
33 34 0.603569 GTTCTCAGCGACCTTCAGGA 59.396 55.000 0.00 0.00 38.94 3.86
34 35 0.318441 TGTTCTCAGCGACCTTCAGG 59.682 55.000 0.00 0.00 42.17 3.86
35 36 2.376808 ATGTTCTCAGCGACCTTCAG 57.623 50.000 0.00 0.00 0.00 3.02
36 37 2.839486 AATGTTCTCAGCGACCTTCA 57.161 45.000 0.00 0.00 0.00 3.02
37 38 4.433615 TGATAATGTTCTCAGCGACCTTC 58.566 43.478 0.00 0.00 0.00 3.46
38 39 4.471904 TGATAATGTTCTCAGCGACCTT 57.528 40.909 0.00 0.00 0.00 3.50
39 40 4.471904 TTGATAATGTTCTCAGCGACCT 57.528 40.909 0.00 0.00 0.00 3.85
40 41 4.811024 TCATTGATAATGTTCTCAGCGACC 59.189 41.667 1.92 0.00 39.87 4.79
41 42 5.557893 GCTCATTGATAATGTTCTCAGCGAC 60.558 44.000 1.92 0.00 39.87 5.19
42 43 4.509230 GCTCATTGATAATGTTCTCAGCGA 59.491 41.667 1.92 0.00 39.87 4.93
43 44 4.510711 AGCTCATTGATAATGTTCTCAGCG 59.489 41.667 1.92 0.00 39.87 5.18
44 45 5.526479 TCAGCTCATTGATAATGTTCTCAGC 59.474 40.000 1.92 3.55 39.87 4.26
45 46 7.549615 TTCAGCTCATTGATAATGTTCTCAG 57.450 36.000 1.92 0.00 39.87 3.35
46 47 8.515695 AATTCAGCTCATTGATAATGTTCTCA 57.484 30.769 1.92 0.00 39.87 3.27
47 48 8.838365 AGAATTCAGCTCATTGATAATGTTCTC 58.162 33.333 8.44 0.00 39.87 2.87
48 49 8.749026 AGAATTCAGCTCATTGATAATGTTCT 57.251 30.769 8.44 0.25 39.87 3.01
49 50 9.234384 CAAGAATTCAGCTCATTGATAATGTTC 57.766 33.333 8.44 0.00 39.87 3.18
50 51 8.195436 CCAAGAATTCAGCTCATTGATAATGTT 58.805 33.333 8.44 0.00 39.87 2.71
51 52 7.558807 TCCAAGAATTCAGCTCATTGATAATGT 59.441 33.333 8.44 0.00 39.87 2.71
52 53 7.937649 TCCAAGAATTCAGCTCATTGATAATG 58.062 34.615 8.44 0.00 40.28 1.90
53 54 7.997223 TCTCCAAGAATTCAGCTCATTGATAAT 59.003 33.333 8.44 0.00 0.00 1.28
54 55 7.341030 TCTCCAAGAATTCAGCTCATTGATAA 58.659 34.615 8.44 0.00 0.00 1.75
55 56 6.892485 TCTCCAAGAATTCAGCTCATTGATA 58.108 36.000 8.44 0.00 0.00 2.15
56 57 5.752650 TCTCCAAGAATTCAGCTCATTGAT 58.247 37.500 8.44 0.00 0.00 2.57
57 58 5.169992 TCTCCAAGAATTCAGCTCATTGA 57.830 39.130 8.44 0.00 0.00 2.57
58 59 5.892160 TTCTCCAAGAATTCAGCTCATTG 57.108 39.130 8.44 2.21 0.00 2.82
59 60 5.296283 CGATTCTCCAAGAATTCAGCTCATT 59.704 40.000 8.44 0.00 44.41 2.57
60 61 4.815308 CGATTCTCCAAGAATTCAGCTCAT 59.185 41.667 8.44 0.00 44.41 2.90
61 62 4.186926 CGATTCTCCAAGAATTCAGCTCA 58.813 43.478 8.44 0.00 44.41 4.26
62 63 3.002144 GCGATTCTCCAAGAATTCAGCTC 59.998 47.826 8.44 0.00 44.41 4.09
63 64 2.941720 GCGATTCTCCAAGAATTCAGCT 59.058 45.455 8.44 0.00 44.41 4.24
64 65 2.941720 AGCGATTCTCCAAGAATTCAGC 59.058 45.455 8.44 9.53 44.41 4.26
65 66 3.311871 CCAGCGATTCTCCAAGAATTCAG 59.688 47.826 8.44 0.00 44.41 3.02
66 67 3.055167 TCCAGCGATTCTCCAAGAATTCA 60.055 43.478 8.44 0.00 44.41 2.57
67 68 3.535561 TCCAGCGATTCTCCAAGAATTC 58.464 45.455 0.00 0.00 44.41 2.17
68 69 3.634397 TCCAGCGATTCTCCAAGAATT 57.366 42.857 3.85 0.00 44.41 2.17
69 70 3.853355 ATCCAGCGATTCTCCAAGAAT 57.147 42.857 1.92 1.92 46.84 2.40
70 71 3.634397 AATCCAGCGATTCTCCAAGAA 57.366 42.857 0.00 0.00 38.78 2.52
79 80 2.019984 GCTCCTTTGAATCCAGCGATT 58.980 47.619 0.00 0.00 41.57 3.34
80 81 1.065199 TGCTCCTTTGAATCCAGCGAT 60.065 47.619 0.00 0.00 32.43 4.58
81 82 0.324614 TGCTCCTTTGAATCCAGCGA 59.675 50.000 0.00 0.00 32.43 4.93
82 83 0.449388 GTGCTCCTTTGAATCCAGCG 59.551 55.000 0.00 0.00 32.43 5.18
83 84 1.538047 TGTGCTCCTTTGAATCCAGC 58.462 50.000 0.00 0.00 0.00 4.85
84 85 3.119245 CCATTGTGCTCCTTTGAATCCAG 60.119 47.826 0.00 0.00 0.00 3.86
85 86 2.827322 CCATTGTGCTCCTTTGAATCCA 59.173 45.455 0.00 0.00 0.00 3.41
86 87 3.091545 TCCATTGTGCTCCTTTGAATCC 58.908 45.455 0.00 0.00 0.00 3.01
87 88 3.507233 TGTCCATTGTGCTCCTTTGAATC 59.493 43.478 0.00 0.00 0.00 2.52
88 89 3.499338 TGTCCATTGTGCTCCTTTGAAT 58.501 40.909 0.00 0.00 0.00 2.57
89 90 2.886523 CTGTCCATTGTGCTCCTTTGAA 59.113 45.455 0.00 0.00 0.00 2.69
90 91 2.507484 CTGTCCATTGTGCTCCTTTGA 58.493 47.619 0.00 0.00 0.00 2.69
91 92 1.542915 CCTGTCCATTGTGCTCCTTTG 59.457 52.381 0.00 0.00 0.00 2.77
92 93 1.915141 CCTGTCCATTGTGCTCCTTT 58.085 50.000 0.00 0.00 0.00 3.11
93 94 0.610232 GCCTGTCCATTGTGCTCCTT 60.610 55.000 0.00 0.00 0.00 3.36
94 95 1.001641 GCCTGTCCATTGTGCTCCT 60.002 57.895 0.00 0.00 0.00 3.69
95 96 2.401766 CGCCTGTCCATTGTGCTCC 61.402 63.158 0.00 0.00 0.00 4.70
96 97 3.044059 GCGCCTGTCCATTGTGCTC 62.044 63.158 0.00 0.00 32.93 4.26
97 98 3.058160 GCGCCTGTCCATTGTGCT 61.058 61.111 0.00 0.00 32.93 4.40
98 99 4.465512 CGCGCCTGTCCATTGTGC 62.466 66.667 0.00 0.00 0.00 4.57
99 100 2.741985 TCGCGCCTGTCCATTGTG 60.742 61.111 0.00 0.00 0.00 3.33
100 101 2.244117 ATCTCGCGCCTGTCCATTGT 62.244 55.000 0.00 0.00 0.00 2.71
101 102 0.249447 TATCTCGCGCCTGTCCATTG 60.249 55.000 0.00 0.00 0.00 2.82
102 103 0.464036 TTATCTCGCGCCTGTCCATT 59.536 50.000 0.00 0.00 0.00 3.16
103 104 0.681733 ATTATCTCGCGCCTGTCCAT 59.318 50.000 0.00 0.00 0.00 3.41
104 105 0.464036 AATTATCTCGCGCCTGTCCA 59.536 50.000 0.00 0.00 0.00 4.02
105 106 1.527311 GAAATTATCTCGCGCCTGTCC 59.473 52.381 0.00 0.00 0.00 4.02
106 107 2.474816 AGAAATTATCTCGCGCCTGTC 58.525 47.619 0.00 0.00 30.46 3.51
107 108 2.604046 AGAAATTATCTCGCGCCTGT 57.396 45.000 0.00 0.00 30.46 4.00
108 109 3.557595 AGAAAGAAATTATCTCGCGCCTG 59.442 43.478 0.00 0.00 37.42 4.85
109 110 3.798202 AGAAAGAAATTATCTCGCGCCT 58.202 40.909 0.00 0.00 37.42 5.52
110 111 4.537936 AAGAAAGAAATTATCTCGCGCC 57.462 40.909 0.00 0.00 37.42 6.53
111 112 5.801012 AGAAAGAAAGAAATTATCTCGCGC 58.199 37.500 0.00 0.00 37.42 6.86
112 113 8.171840 AGAAAGAAAGAAAGAAATTATCTCGCG 58.828 33.333 0.00 0.00 37.42 5.87
113 114 9.833182 AAGAAAGAAAGAAAGAAATTATCTCGC 57.167 29.630 0.00 0.00 37.42 5.03
146 147 9.595823 GGAAAAGCTATACAAATGTACACTAGA 57.404 33.333 0.00 0.00 32.72 2.43
147 148 9.601217 AGGAAAAGCTATACAAATGTACACTAG 57.399 33.333 0.00 0.00 32.72 2.57
148 149 9.953565 AAGGAAAAGCTATACAAATGTACACTA 57.046 29.630 0.00 0.00 32.72 2.74
149 150 8.863872 AAGGAAAAGCTATACAAATGTACACT 57.136 30.769 0.00 0.00 32.72 3.55
150 151 8.182227 GGAAGGAAAAGCTATACAAATGTACAC 58.818 37.037 0.00 0.00 32.72 2.90
151 152 7.338449 GGGAAGGAAAAGCTATACAAATGTACA 59.662 37.037 0.00 0.00 32.72 2.90
152 153 7.201794 GGGGAAGGAAAAGCTATACAAATGTAC 60.202 40.741 0.00 0.00 32.72 2.90
153 154 6.831868 GGGGAAGGAAAAGCTATACAAATGTA 59.168 38.462 0.00 0.00 34.67 2.29
154 155 5.656859 GGGGAAGGAAAAGCTATACAAATGT 59.343 40.000 0.00 0.00 0.00 2.71
155 156 5.893824 AGGGGAAGGAAAAGCTATACAAATG 59.106 40.000 0.00 0.00 0.00 2.32
156 157 6.092346 AGGGGAAGGAAAAGCTATACAAAT 57.908 37.500 0.00 0.00 0.00 2.32
157 158 5.530176 AGGGGAAGGAAAAGCTATACAAA 57.470 39.130 0.00 0.00 0.00 2.83
158 159 5.530176 AAGGGGAAGGAAAAGCTATACAA 57.470 39.130 0.00 0.00 0.00 2.41
159 160 5.253096 AGAAAGGGGAAGGAAAAGCTATACA 59.747 40.000 0.00 0.00 0.00 2.29
160 161 5.590663 CAGAAAGGGGAAGGAAAAGCTATAC 59.409 44.000 0.00 0.00 0.00 1.47
161 162 5.340027 CCAGAAAGGGGAAGGAAAAGCTATA 60.340 44.000 0.00 0.00 0.00 1.31
162 163 4.570719 CCAGAAAGGGGAAGGAAAAGCTAT 60.571 45.833 0.00 0.00 0.00 2.97
163 164 3.245264 CCAGAAAGGGGAAGGAAAAGCTA 60.245 47.826 0.00 0.00 0.00 3.32
164 165 2.491640 CCAGAAAGGGGAAGGAAAAGCT 60.492 50.000 0.00 0.00 0.00 3.74
165 166 1.895798 CCAGAAAGGGGAAGGAAAAGC 59.104 52.381 0.00 0.00 0.00 3.51
166 167 1.895798 GCCAGAAAGGGGAAGGAAAAG 59.104 52.381 0.00 0.00 38.09 2.27
167 168 1.482365 GGCCAGAAAGGGGAAGGAAAA 60.482 52.381 0.00 0.00 38.09 2.29
168 169 0.114364 GGCCAGAAAGGGGAAGGAAA 59.886 55.000 0.00 0.00 38.09 3.13
169 170 0.776080 AGGCCAGAAAGGGGAAGGAA 60.776 55.000 5.01 0.00 38.09 3.36
170 171 0.776080 AAGGCCAGAAAGGGGAAGGA 60.776 55.000 5.01 0.00 38.09 3.36
171 172 0.323816 GAAGGCCAGAAAGGGGAAGG 60.324 60.000 5.01 0.00 38.09 3.46
172 173 0.405585 TGAAGGCCAGAAAGGGGAAG 59.594 55.000 5.01 0.00 38.09 3.46
173 174 0.405585 CTGAAGGCCAGAAAGGGGAA 59.594 55.000 5.01 0.00 45.78 3.97
174 175 2.078452 CTGAAGGCCAGAAAGGGGA 58.922 57.895 5.01 0.00 45.78 4.81
175 176 1.680314 GCTGAAGGCCAGAAAGGGG 60.680 63.158 5.01 0.00 45.78 4.79
176 177 4.009015 GCTGAAGGCCAGAAAGGG 57.991 61.111 5.01 0.00 45.78 3.95
185 186 2.035442 GTTCAGGACGGCTGAAGGC 61.035 63.158 0.00 0.00 40.89 4.35
186 187 1.376037 GGTTCAGGACGGCTGAAGG 60.376 63.158 0.00 0.00 40.89 3.46
187 188 0.035458 AAGGTTCAGGACGGCTGAAG 59.965 55.000 0.00 0.00 40.89 3.02
188 189 0.250295 CAAGGTTCAGGACGGCTGAA 60.250 55.000 0.00 0.00 38.35 3.02
189 190 1.118965 TCAAGGTTCAGGACGGCTGA 61.119 55.000 0.00 0.00 0.00 4.26
190 191 0.951040 GTCAAGGTTCAGGACGGCTG 60.951 60.000 0.00 0.00 0.00 4.85
191 192 1.371558 GTCAAGGTTCAGGACGGCT 59.628 57.895 0.00 0.00 0.00 5.52
192 193 0.321653 ATGTCAAGGTTCAGGACGGC 60.322 55.000 0.00 0.00 34.32 5.68
193 194 1.270839 ACATGTCAAGGTTCAGGACGG 60.271 52.381 0.00 0.00 34.32 4.79
194 195 2.169832 ACATGTCAAGGTTCAGGACG 57.830 50.000 0.00 0.00 34.32 4.79
195 196 5.940470 AGAAATACATGTCAAGGTTCAGGAC 59.060 40.000 0.00 0.00 0.00 3.85
196 197 6.126863 AGAAATACATGTCAAGGTTCAGGA 57.873 37.500 0.00 0.00 0.00 3.86
197 198 6.349611 CCAAGAAATACATGTCAAGGTTCAGG 60.350 42.308 0.00 3.44 0.00 3.86
198 199 6.349611 CCCAAGAAATACATGTCAAGGTTCAG 60.350 42.308 0.00 0.00 0.00 3.02
199 200 5.476599 CCCAAGAAATACATGTCAAGGTTCA 59.523 40.000 0.00 0.00 0.00 3.18
200 201 5.105756 CCCCAAGAAATACATGTCAAGGTTC 60.106 44.000 0.00 0.28 0.00 3.62
201 202 4.772100 CCCCAAGAAATACATGTCAAGGTT 59.228 41.667 0.00 0.00 0.00 3.50
202 203 4.202673 ACCCCAAGAAATACATGTCAAGGT 60.203 41.667 0.00 0.00 0.00 3.50
203 204 4.158394 CACCCCAAGAAATACATGTCAAGG 59.842 45.833 0.00 0.00 0.00 3.61
204 205 4.766891 ACACCCCAAGAAATACATGTCAAG 59.233 41.667 0.00 0.00 0.00 3.02
205 206 4.735369 ACACCCCAAGAAATACATGTCAA 58.265 39.130 0.00 0.00 0.00 3.18
206 207 4.042809 AGACACCCCAAGAAATACATGTCA 59.957 41.667 0.00 0.00 38.11 3.58
207 208 4.589908 AGACACCCCAAGAAATACATGTC 58.410 43.478 0.00 0.00 36.34 3.06
208 209 4.042809 TGAGACACCCCAAGAAATACATGT 59.957 41.667 2.69 2.69 0.00 3.21
209 210 4.588899 TGAGACACCCCAAGAAATACATG 58.411 43.478 0.00 0.00 0.00 3.21
210 211 4.927267 TGAGACACCCCAAGAAATACAT 57.073 40.909 0.00 0.00 0.00 2.29
211 212 4.324254 GGATGAGACACCCCAAGAAATACA 60.324 45.833 0.00 0.00 0.00 2.29
212 213 4.080299 AGGATGAGACACCCCAAGAAATAC 60.080 45.833 0.00 0.00 0.00 1.89
213 214 4.111577 AGGATGAGACACCCCAAGAAATA 58.888 43.478 0.00 0.00 0.00 1.40
214 215 2.922283 AGGATGAGACACCCCAAGAAAT 59.078 45.455 0.00 0.00 0.00 2.17
215 216 2.348472 AGGATGAGACACCCCAAGAAA 58.652 47.619 0.00 0.00 0.00 2.52
216 217 2.044793 AGGATGAGACACCCCAAGAA 57.955 50.000 0.00 0.00 0.00 2.52
217 218 2.940514 TAGGATGAGACACCCCAAGA 57.059 50.000 0.00 0.00 0.00 3.02
218 219 3.312890 AGATAGGATGAGACACCCCAAG 58.687 50.000 0.00 0.00 0.00 3.61
219 220 3.421394 AGATAGGATGAGACACCCCAA 57.579 47.619 0.00 0.00 0.00 4.12
220 221 3.421394 AAGATAGGATGAGACACCCCA 57.579 47.619 0.00 0.00 0.00 4.96
221 222 5.544176 TCATTAAGATAGGATGAGACACCCC 59.456 44.000 0.00 0.00 0.00 4.95
222 223 6.672266 TCATTAAGATAGGATGAGACACCC 57.328 41.667 0.00 0.00 0.00 4.61
223 224 8.370940 TCATTCATTAAGATAGGATGAGACACC 58.629 37.037 0.00 0.00 32.00 4.16
224 225 9.770097 TTCATTCATTAAGATAGGATGAGACAC 57.230 33.333 0.00 0.00 32.00 3.67
231 232 9.803507 TGCTGATTTCATTCATTAAGATAGGAT 57.196 29.630 0.00 0.00 0.00 3.24
232 233 9.060347 GTGCTGATTTCATTCATTAAGATAGGA 57.940 33.333 0.00 0.00 0.00 2.94
233 234 8.843262 TGTGCTGATTTCATTCATTAAGATAGG 58.157 33.333 0.00 0.00 0.00 2.57
236 237 9.529325 CATTGTGCTGATTTCATTCATTAAGAT 57.471 29.630 0.00 0.00 0.00 2.40
237 238 7.490079 GCATTGTGCTGATTTCATTCATTAAGA 59.510 33.333 0.00 0.00 40.96 2.10
238 239 7.618442 GCATTGTGCTGATTTCATTCATTAAG 58.382 34.615 0.00 0.00 40.96 1.85
239 240 7.528481 GCATTGTGCTGATTTCATTCATTAA 57.472 32.000 0.00 0.00 40.96 1.40
254 255 6.360305 TTTTGACGAAAAACAGCATTGTGCT 61.360 36.000 0.00 0.00 42.83 4.40
255 256 2.458951 TGACGAAAAACAGCATTGTGC 58.541 42.857 0.00 0.00 45.46 4.57
256 257 5.447478 TTTTGACGAAAAACAGCATTGTG 57.553 34.783 0.00 0.00 37.67 3.33
284 285 1.595794 CGTACACGTCCAGCACTTTTT 59.404 47.619 0.00 0.00 34.11 1.94
285 286 1.214367 CGTACACGTCCAGCACTTTT 58.786 50.000 0.00 0.00 34.11 2.27
286 287 0.599204 CCGTACACGTCCAGCACTTT 60.599 55.000 0.58 0.00 37.74 2.66
301 302 2.162338 CTCCAGTTCCGTTGCCCGTA 62.162 60.000 0.00 0.00 33.66 4.02
393 400 4.344865 GGCTGGGCAGGGACGAAA 62.345 66.667 0.00 0.00 0.00 3.46
423 430 1.606350 CGAAGCGAACTGACACGACC 61.606 60.000 0.00 0.00 0.00 4.79
450 457 4.308458 CCAACCAGACCGGCGACA 62.308 66.667 9.30 0.00 39.03 4.35
499 506 3.526931 ATACTGACGGGAACATCACAG 57.473 47.619 0.00 0.00 0.00 3.66
504 511 4.881850 GGAATTGAATACTGACGGGAACAT 59.118 41.667 0.00 0.00 0.00 2.71
508 515 2.841266 TGGGAATTGAATACTGACGGGA 59.159 45.455 0.00 0.00 0.00 5.14
510 517 3.063452 CGTTGGGAATTGAATACTGACGG 59.937 47.826 0.00 0.00 0.00 4.79
511 518 3.485216 GCGTTGGGAATTGAATACTGACG 60.485 47.826 0.00 0.00 0.00 4.35
512 519 3.181500 GGCGTTGGGAATTGAATACTGAC 60.181 47.826 0.00 0.00 0.00 3.51
513 520 3.013921 GGCGTTGGGAATTGAATACTGA 58.986 45.455 0.00 0.00 0.00 3.41
556 564 4.944930 ACAGGAGTCTCACATAGTGTACTC 59.055 45.833 18.36 18.36 41.73 2.59
565 588 2.564947 GGTCTTCACAGGAGTCTCACAT 59.435 50.000 1.47 0.00 0.00 3.21
671 744 0.664767 GGATCGAGCACACCGATAGC 60.665 60.000 1.84 0.00 45.49 2.97
760 837 6.141527 CGCAAAATATCGTTTCTGTGTGAAAA 59.858 34.615 0.00 0.00 45.10 2.29
1162 1251 4.498520 CAGGAGCACGACGGCGAT 62.499 66.667 22.49 1.35 41.64 4.58
1173 1262 1.412343 GTGAGGAAGAGGATCAGGAGC 59.588 57.143 0.00 0.00 37.82 4.70
1280 1369 1.639298 GGTGACGTTGAGCTGGATGC 61.639 60.000 0.00 0.00 43.29 3.91
1662 1751 3.858868 GAGCTTGGTGTGGTCGCGA 62.859 63.158 3.71 3.71 0.00 5.87
1688 1777 1.735559 GACGGACGAAACGAAGGGG 60.736 63.158 0.00 0.00 34.93 4.79
1691 1780 1.332882 GACGGACGGACGAAACGAAG 61.333 60.000 8.01 0.00 37.61 3.79
1692 1781 1.370414 GACGGACGGACGAAACGAA 60.370 57.895 8.01 0.00 37.61 3.85
1693 1782 2.252260 GACGGACGGACGAAACGA 59.748 61.111 8.01 0.00 37.61 3.85
1695 1784 2.802414 CGGACGGACGGACGAAAC 60.802 66.667 8.01 0.00 37.61 2.78
1713 1808 2.088338 GACGGACAACTATCGTCGAG 57.912 55.000 0.00 0.00 42.60 4.04
1830 1925 2.092323 TCTCTCCGTGATGACAACGAT 58.908 47.619 1.25 0.00 0.00 3.73
1860 1955 3.255888 GGAAATTCCAGAAACACCTCACC 59.744 47.826 7.23 0.00 36.28 4.02
1885 1980 4.877251 TGATGAAATGATGATGAAGCGTCA 59.123 37.500 4.40 4.40 38.11 4.35
1901 1996 7.999545 AGCAGTAGGAGTACTATACTGATGAAA 59.000 37.037 32.42 4.52 46.01 2.69
1903 1998 7.080653 AGCAGTAGGAGTACTATACTGATGA 57.919 40.000 32.42 5.35 46.01 2.92
1906 2001 6.249911 ACAGCAGTAGGAGTACTATACTGA 57.750 41.667 32.42 8.39 46.01 3.41
1907 2002 7.661127 CTACAGCAGTAGGAGTACTATACTG 57.339 44.000 27.96 27.96 45.92 2.74
1980 2077 1.363807 GCAAGACCAAACCCAGCAC 59.636 57.895 0.00 0.00 0.00 4.40
2041 2143 9.908152 CAAGACATATCCGTGTATACTAATCAA 57.092 33.333 4.17 0.00 31.16 2.57
2043 2145 8.244802 AGCAAGACATATCCGTGTATACTAATC 58.755 37.037 4.17 0.00 31.16 1.75
2044 2146 8.123639 AGCAAGACATATCCGTGTATACTAAT 57.876 34.615 4.17 0.00 31.16 1.73
2063 2165 6.880529 TGATGTGATGAACAATAAGAGCAAGA 59.119 34.615 0.00 0.00 43.61 3.02
2098 2200 6.922247 AAGCAAGAATCTAGACACATGATG 57.078 37.500 0.00 0.00 0.00 3.07
2099 2201 7.108194 TCAAAGCAAGAATCTAGACACATGAT 58.892 34.615 0.00 0.00 0.00 2.45
2100 2202 6.466812 TCAAAGCAAGAATCTAGACACATGA 58.533 36.000 0.00 0.00 0.00 3.07
2101 2203 6.675002 GCTCAAAGCAAGAATCTAGACACATG 60.675 42.308 0.00 0.00 41.89 3.21
2124 2226 1.084370 GTGCTTAGGATTCGTGCGCT 61.084 55.000 9.73 0.00 0.00 5.92
2197 2311 2.543067 ATCAAGTGCTCGGGGAAGGC 62.543 60.000 0.00 0.00 0.00 4.35
2209 2323 6.713762 AGAGAGTAATCAGAGGATCAAGTG 57.286 41.667 0.00 0.00 37.82 3.16
2231 2345 9.905713 TGGCTTGGCTTTAAGGATTATATATAG 57.094 33.333 0.00 0.00 0.00 1.31
2232 2346 9.681062 GTGGCTTGGCTTTAAGGATTATATATA 57.319 33.333 0.00 0.00 0.00 0.86
2236 2350 5.103686 AGGTGGCTTGGCTTTAAGGATTATA 60.104 40.000 0.00 0.00 0.00 0.98
2237 2351 3.960755 GGTGGCTTGGCTTTAAGGATTAT 59.039 43.478 0.00 0.00 0.00 1.28
2238 2352 3.011257 AGGTGGCTTGGCTTTAAGGATTA 59.989 43.478 0.00 0.00 0.00 1.75
2239 2353 2.179427 GGTGGCTTGGCTTTAAGGATT 58.821 47.619 0.00 0.00 0.00 3.01
2240 2354 1.359130 AGGTGGCTTGGCTTTAAGGAT 59.641 47.619 0.00 0.00 0.00 3.24
2242 2356 0.890683 CAGGTGGCTTGGCTTTAAGG 59.109 55.000 0.00 0.00 0.00 2.69
2243 2357 1.541588 GACAGGTGGCTTGGCTTTAAG 59.458 52.381 0.00 0.00 0.00 1.85
2244 2358 1.133637 TGACAGGTGGCTTGGCTTTAA 60.134 47.619 0.00 0.00 0.00 1.52
2258 2372 1.233019 CTTTCAGCACAGGTGACAGG 58.767 55.000 3.10 0.00 39.84 4.00
2259 2373 1.959042 ACTTTCAGCACAGGTGACAG 58.041 50.000 3.10 9.93 41.66 3.51
2260 2374 3.552132 TTACTTTCAGCACAGGTGACA 57.448 42.857 3.10 0.00 39.84 3.58
2261 2375 5.438761 AAATTACTTTCAGCACAGGTGAC 57.561 39.130 3.10 0.00 39.84 3.67
2262 2376 5.592282 TGAAAATTACTTTCAGCACAGGTGA 59.408 36.000 3.10 0.00 46.80 4.02
2337 2476 4.829064 TTCACTGCTTGTATGTTTGACC 57.171 40.909 0.00 0.00 0.00 4.02
2372 2513 5.794894 TGATCAGAGGAAAAAGGACTACAC 58.205 41.667 0.00 0.00 0.00 2.90
2374 2515 7.106239 TCATTGATCAGAGGAAAAAGGACTAC 58.894 38.462 0.00 0.00 0.00 2.73
2382 2523 5.416952 GGAGCTTTCATTGATCAGAGGAAAA 59.583 40.000 15.07 5.73 0.00 2.29
2417 2558 0.240145 CCCTTTTTCGTTCCCTTCGC 59.760 55.000 0.00 0.00 0.00 4.70
2419 2560 4.329392 TGATACCCTTTTTCGTTCCCTTC 58.671 43.478 0.00 0.00 0.00 3.46
2425 2566 3.892588 TGCCTTTGATACCCTTTTTCGTT 59.107 39.130 0.00 0.00 0.00 3.85
2436 2577 4.394920 TCGATTTGTCCTTGCCTTTGATAC 59.605 41.667 0.00 0.00 0.00 2.24
2445 2586 1.803289 GGCCTCGATTTGTCCTTGC 59.197 57.895 0.00 0.00 0.00 4.01
2448 2589 1.218316 GACGGCCTCGATTTGTCCT 59.782 57.895 0.00 0.00 40.11 3.85
2472 2613 4.218200 CGTCAGATAGAGCTTCAGATGGAT 59.782 45.833 0.00 0.00 0.00 3.41
2479 2620 1.769026 AGCCGTCAGATAGAGCTTCA 58.231 50.000 0.00 0.00 0.00 3.02
2525 2666 2.263077 GTGCTGTCCTGTCACGATTAG 58.737 52.381 0.00 0.00 0.00 1.73
2527 2668 0.392706 TGTGCTGTCCTGTCACGATT 59.607 50.000 0.00 0.00 33.69 3.34
2538 2679 5.818136 TCTGCCTTATTAATTGTGCTGTC 57.182 39.130 0.00 0.00 0.00 3.51
2539 2680 5.887598 TCATCTGCCTTATTAATTGTGCTGT 59.112 36.000 0.00 0.00 0.00 4.40
2588 2729 1.291877 GGTGAGTTGCTGGCGTACTG 61.292 60.000 5.20 0.00 0.00 2.74
2601 2745 1.533469 GCGACTGGTGTAGGGTGAGT 61.533 60.000 0.00 0.00 0.00 3.41
2629 2773 1.549203 AATCGAACATGGCTTGGCTT 58.451 45.000 5.31 0.00 0.00 4.35
2630 2774 1.474077 GAAATCGAACATGGCTTGGCT 59.526 47.619 5.31 0.00 0.00 4.75
2631 2775 1.795162 CGAAATCGAACATGGCTTGGC 60.795 52.381 5.31 0.00 43.02 4.52
2632 2776 1.795162 GCGAAATCGAACATGGCTTGG 60.795 52.381 7.06 0.00 43.02 3.61
2633 2777 1.538276 GCGAAATCGAACATGGCTTG 58.462 50.000 7.06 0.00 43.02 4.01
2647 2796 1.135717 CGAAATGATGCAGTGGCGAAA 60.136 47.619 0.00 0.00 45.35 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.