AutoCloner

Multiple sequence alignment - TraesCS5A01G144500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5A01G144500	chr5A	100.000	4190	0	0	1	4190	320485357	320489546	0.000000e+00	7738
1	TraesCS5A01G144500	chr5A	96.599	147	5	0	3958	4104	311630873	311630727	1.160000e-60	244
2	TraesCS5A01G144500	chr5A	89.873	158	10	1	3958	4109	396518149	396518306	9.190000e-47	198
3	TraesCS5A01G144500	chr5A	98.765	81	1	0	4110	4190	80455064	80454984	1.210000e-30	145
4	TraesCS5A01G144500	chr5A	98.765	81	1	0	4110	4190	320461564	320461644	1.210000e-30	145
5	TraesCS5A01G144500	chr5A	98.765	81	1	0	4110	4190	320747902	320747822	1.210000e-30	145
6	TraesCS5A01G144500	chr7A	98.082	4119	64	6	1	4109	309551610	309555723	0.000000e+00	7155
7	TraesCS5A01G144500	chr7A	94.919	3287	156	6	676	3956	572342839	572346120	0.000000e+00	5134
8	TraesCS5A01G144500	chr7A	98.765	81	1	0	4110	4190	230910407	230910487	1.210000e-30	145
9	TraesCS5A01G144500	chr7A	98.765	81	1	0	4110	4190	445357217	445357297	1.210000e-30	145
10	TraesCS5A01G144500	chr6A	97.685	4146	57	15	1	4110	16549371	16545229	0.000000e+00	7088
11	TraesCS5A01G144500	chr6A	97.455	4126	70	10	1	4109	25222517	25226624	0.000000e+00	7005
12	TraesCS5A01G144500	chr6A	97.451	4119	71	13	1	4109	396387850	396391944	0.000000e+00	6994
13	TraesCS5A01G144500	chr6A	94.808	3159	135	20	822	3956	11515756	11518909	0.000000e+00	4898
14	TraesCS5A01G144500	chr3D	95.503	3402	119	19	676	4060	126047564	126050948	0.000000e+00	5404
15	TraesCS5A01G144500	chr3D	94.541	458	20	2	676	1131	8969641	8969187	0.000000e+00	702
16	TraesCS5A01G144500	chr6B	95.182	2947	129	8	441	3379	331029784	331032725	0.000000e+00	4643
17	TraesCS5A01G144500	chr6B	91.093	247	14	3	1	247	331029428	331029666	1.120000e-85	327
18	TraesCS5A01G144500	chr6B	93.151	73	4	1	254	325	331029714	331029786	5.730000e-19	106
19	TraesCS5A01G144500	chr1A	95.539	2623	107	6	1342	3956	90114407	90117027	0.000000e+00	4187
20	TraesCS5A01G144500	chr1A	98.765	81	1	0	4110	4190	440170023	440169943	1.210000e-30	145
21	TraesCS5A01G144500	chr7B	95.522	469	16	2	441	908	231202754	231203218	0.000000e+00	745
22	TraesCS5A01G144500	chr7B	91.165	249	13	4	1	248	231202397	231202637	3.120000e-86	329
23	TraesCS5A01G144500	chr7B	98.765	81	1	0	4110	4190	189585	189505	1.210000e-30	145
24	TraesCS5A01G144500	chr7B	93.151	73	4	1	254	325	231202684	231202756	5.730000e-19	106
25	TraesCS5A01G144500	chr2B	96.437	449	14	2	441	888	157788606	157789053	0.000000e+00	739
26	TraesCS5A01G144500	chr2B	89.960	249	15	4	1	247	157788248	157788488	3.150000e-81	313
27	TraesCS5A01G144500	chr2B	89.113	248	18	4	1	247	691194997	691194758	2.450000e-77	300
28	TraesCS5A01G144500	chr2B	89.542	153	15	1	3958	4110	157803379	157803530	4.270000e-45	193
29	TraesCS5A01G144500	chr2B	87.975	158	13	1	3958	4109	691193417	691193260	9.250000e-42	182
30	TraesCS5A01G144500	chr2B	96.000	75	2	1	440	514	691194640	691194567	2.050000e-23	121
31	TraesCS5A01G144500	chr2B	94.444	72	3	1	254	324	691194710	691194639	4.430000e-20	110
32	TraesCS5A01G144500	chr2B	93.151	73	4	1	254	325	157788536	157788608	5.730000e-19	106
33	TraesCS5A01G144500	chr4A	95.111	225	11	0	442	666	658969386	658969162	5.150000e-94	355
34	TraesCS5A01G144500	chr4A	92.793	111	8	0	137	247	658969893	658969783	1.210000e-35	161
35	TraesCS5A01G144500	chr3A	98.765	81	1	0	4110	4190	182295925	182295845	1.210000e-30	145
36	TraesCS5A01G144500	chr3A	98.765	81	1	0	4110	4190	521698032	521698112	1.210000e-30	145
37	TraesCS5A01G144500	chr2A	84.559	136	15	1	3975	4104	752779660	752779525	3.400000e-26	130

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5A01G144500	chr5A	320485357	320489546	4189	False	7738.000000	7738	100.000000	1	4190	1	chr5A.!!$F2	4189
1	TraesCS5A01G144500	chr7A	309551610	309555723	4113	False	7155.000000	7155	98.082000	1	4109	1	chr7A.!!$F2	4108
2	TraesCS5A01G144500	chr7A	572342839	572346120	3281	False	5134.000000	5134	94.919000	676	3956	1	chr7A.!!$F4	3280
3	TraesCS5A01G144500	chr6A	16545229	16549371	4142	True	7088.000000	7088	97.685000	1	4110	1	chr6A.!!$R1	4109
4	TraesCS5A01G144500	chr6A	25222517	25226624	4107	False	7005.000000	7005	97.455000	1	4109	1	chr6A.!!$F2	4108
5	TraesCS5A01G144500	chr6A	396387850	396391944	4094	False	6994.000000	6994	97.451000	1	4109	1	chr6A.!!$F3	4108
6	TraesCS5A01G144500	chr6A	11515756	11518909	3153	False	4898.000000	4898	94.808000	822	3956	1	chr6A.!!$F1	3134
7	TraesCS5A01G144500	chr3D	126047564	126050948	3384	False	5404.000000	5404	95.503000	676	4060	1	chr3D.!!$F1	3384
8	TraesCS5A01G144500	chr6B	331029428	331032725	3297	False	1692.000000	4643	93.142000	1	3379	3	chr6B.!!$F1	3378
9	TraesCS5A01G144500	chr1A	90114407	90117027	2620	False	4187.000000	4187	95.539000	1342	3956	1	chr1A.!!$F1	2614
10	TraesCS5A01G144500	chr7B	231202397	231203218	821	False	393.333333	745	93.279333	1	908	3	chr7B.!!$F1	907
11	TraesCS5A01G144500	chr2B	157788248	157789053	805	False	386.000000	739	93.182667	1	888	3	chr2B.!!$F2	887
12	TraesCS5A01G144500	chr4A	658969162	658969893	731	True	258.000000	355	93.952000	137	666	2	chr4A.!!$R1	529

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
631	849	0.611618	ATGGGATGCTTTGCCGACAA	60.612	50.000	0.00	0.00	39.08	3.18	F
1702	1971	1.173913	GACACTGGGGTACATTTGCC	58.826	55.000	0.00	0.00	0.00	4.52	F
2524	2794	4.142049	TGGACCCACAATTCAAGTTGAAAC	60.142	41.667	21.57	6.62	40.12	2.78	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
2524	2794	3.885297	AGGCCAAATCGGAACTCAATATG	59.115	43.478	5.01	36.56	1.78	R
2680	2951	4.910304	AGCCATAGGATCTTCACCACTTAT	59.090	41.667	0.00	0.00	1.73	R
4133	4439	0.175989	CTTTAGGTCTCCTGGCCGTC	59.824	60.000	0.00	34.61	4.79	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
272	316	5.070685	AGTGCATATGTTGATGATGCTCAT	58.929	37.500	4.29	0.00	45.04	2.90
631	849	0.611618	ATGGGATGCTTTGCCGACAA	60.612	50.000	0.00	0.00	39.08	3.18
670	888	7.472334	ACTAAACTGTCCGGTTTCTTATCTA	57.528	36.000	7.48	0.00	39.66	1.98
690	908	3.777465	ACATGCATCTGCTGTTGATTC	57.223	42.857	0.00	0.00	42.66	2.52
1059	1279	9.429359	GAAGATGTTGACTATGAAGAAGAAGAA	57.571	33.333	0.00	0.00	0.00	2.52
1073	1293	7.288852	TGAAGAAGAAGAAGAAGGAGAAGAAGA	59.711	37.037	0.00	0.00	0.00	2.87
1074	1294	7.610580	AGAAGAAGAAGAAGGAGAAGAAGAA	57.389	36.000	0.00	0.00	0.00	2.52
1075	1295	7.670364	AGAAGAAGAAGAAGGAGAAGAAGAAG	58.330	38.462	0.00	0.00	0.00	2.85
1298	1566	3.119388	GCAAGGAATATTTGTGCTGAGCA	60.119	43.478	1.40	1.40	35.60	4.26
1350	1618	3.795688	TTGAAGAGATGCAGGGAAAGT	57.204	42.857	0.00	0.00	0.00	2.66
1702	1971	1.173913	GACACTGGGGTACATTTGCC	58.826	55.000	0.00	0.00	0.00	4.52
1770	2039	6.208204	GGATAGTGAAATTTGCAGCTATGGAT	59.792	38.462	0.00	0.00	0.00	3.41
1790	2059	4.996434	GCCGCACACAGGAGCTGT	62.996	66.667	0.00	0.00	46.51	4.40
2282	2551	4.751098	GGAAAATGCTGAAGATGTTTGCAA	59.249	37.500	0.00	0.00	37.20	4.08
2524	2794	4.142049	TGGACCCACAATTCAAGTTGAAAC	60.142	41.667	21.57	6.62	40.12	2.78
2680	2951	2.369860	GGAGGTGATGATGACATGGCTA	59.630	50.000	0.00	0.00	36.82	3.93
3511	3798	9.988815	GATGATGGGTAGTGTATAATGGATATC	57.011	37.037	0.00	0.00	0.00	1.63
3536	3823	6.463995	AGAAGTGTATTTTCTTGCAAACCA	57.536	33.333	0.00	0.00	30.98	3.67
3977	4277	8.532977	TTTAGAAACATTTGCTAAATTCTGGC	57.467	30.769	13.26	0.00	31.30	4.85
4038	4338	0.396695	CTGATGAAATGGGCTGGCCT	60.397	55.000	21.72	0.22	36.10	5.19
4110	4416	0.033208	GGCCCATTCCCATTCTGACA	60.033	55.000	0.00	0.00	0.00	3.58
4111	4417	1.106285	GCCCATTCCCATTCTGACAC	58.894	55.000	0.00	0.00	0.00	3.67
4112	4418	1.341383	GCCCATTCCCATTCTGACACT	60.341	52.381	0.00	0.00	0.00	3.55
4113	4419	2.648059	CCCATTCCCATTCTGACACTC	58.352	52.381	0.00	0.00	0.00	3.51
4114	4420	2.283298	CCATTCCCATTCTGACACTCG	58.717	52.381	0.00	0.00	0.00	4.18
4115	4421	2.093500	CCATTCCCATTCTGACACTCGA	60.093	50.000	0.00	0.00	0.00	4.04
4116	4422	2.743636	TTCCCATTCTGACACTCGAC	57.256	50.000	0.00	0.00	0.00	4.20
4117	4423	0.895530	TCCCATTCTGACACTCGACC	59.104	55.000	0.00	0.00	0.00	4.79
4118	4424	0.608130	CCCATTCTGACACTCGACCA	59.392	55.000	0.00	0.00	0.00	4.02
4119	4425	1.001974	CCCATTCTGACACTCGACCAA	59.998	52.381	0.00	0.00	0.00	3.67
4120	4426	2.341257	CCATTCTGACACTCGACCAAG	58.659	52.381	0.00	0.00	0.00	3.61
4121	4427	2.029020	CCATTCTGACACTCGACCAAGA	60.029	50.000	0.00	0.00	0.00	3.02
4122	4428	3.368843	CCATTCTGACACTCGACCAAGAT	60.369	47.826	0.00	0.00	0.00	2.40
4123	4429	3.577649	TTCTGACACTCGACCAAGATC	57.422	47.619	0.00	0.00	0.00	2.75
4124	4430	1.819288	TCTGACACTCGACCAAGATCC	59.181	52.381	0.00	0.00	0.00	3.36
4125	4431	1.546029	CTGACACTCGACCAAGATCCA	59.454	52.381	0.00	0.00	0.00	3.41
4126	4432	1.967779	TGACACTCGACCAAGATCCAA	59.032	47.619	0.00	0.00	0.00	3.53
4127	4433	2.288825	TGACACTCGACCAAGATCCAAC	60.289	50.000	0.00	0.00	0.00	3.77
4128	4434	1.002087	ACACTCGACCAAGATCCAACC	59.998	52.381	0.00	0.00	0.00	3.77
4129	4435	1.001974	CACTCGACCAAGATCCAACCA	59.998	52.381	0.00	0.00	0.00	3.67
4130	4436	1.002087	ACTCGACCAAGATCCAACCAC	59.998	52.381	0.00	0.00	0.00	4.16
4131	4437	1.276421	CTCGACCAAGATCCAACCACT	59.724	52.381	0.00	0.00	0.00	4.00
4132	4438	1.275291	TCGACCAAGATCCAACCACTC	59.725	52.381	0.00	0.00	0.00	3.51
4133	4439	1.726853	GACCAAGATCCAACCACTCG	58.273	55.000	0.00	0.00	0.00	4.18
4134	4440	1.275291	GACCAAGATCCAACCACTCGA	59.725	52.381	0.00	0.00	0.00	4.04
4135	4441	1.002087	ACCAAGATCCAACCACTCGAC	59.998	52.381	0.00	0.00	0.00	4.20
4136	4442	1.350193	CAAGATCCAACCACTCGACG	58.650	55.000	0.00	0.00	0.00	5.12
4137	4443	0.246635	AAGATCCAACCACTCGACGG	59.753	55.000	0.00	0.00	0.00	4.79
4138	4444	1.810030	GATCCAACCACTCGACGGC	60.810	63.158	0.00	0.00	0.00	5.68
4139	4445	3.310860	ATCCAACCACTCGACGGCC	62.311	63.158	0.00	0.00	0.00	6.13
4140	4446	4.308458	CCAACCACTCGACGGCCA	62.308	66.667	2.24	0.00	0.00	5.36
4141	4447	2.738521	CAACCACTCGACGGCCAG	60.739	66.667	2.24	0.00	0.00	4.85
4142	4448	4.003788	AACCACTCGACGGCCAGG	62.004	66.667	2.24	0.00	0.00	4.45
4143	4449	4.988716	ACCACTCGACGGCCAGGA	62.989	66.667	2.24	0.00	0.00	3.86
4144	4450	4.135153	CCACTCGACGGCCAGGAG	62.135	72.222	2.24	8.41	0.00	3.69
4145	4451	3.062466	CACTCGACGGCCAGGAGA	61.062	66.667	18.52	4.65	0.00	3.71
4146	4452	3.063084	ACTCGACGGCCAGGAGAC	61.063	66.667	18.52	0.00	0.00	3.36
4147	4453	3.827898	CTCGACGGCCAGGAGACC	61.828	72.222	2.24	0.00	0.00	3.85
4148	4454	4.361971	TCGACGGCCAGGAGACCT	62.362	66.667	2.24	0.00	0.00	3.85
4149	4455	2.439701	CGACGGCCAGGAGACCTA	60.440	66.667	2.24	0.00	29.64	3.08
4150	4456	2.050350	CGACGGCCAGGAGACCTAA	61.050	63.158	2.24	0.00	29.64	2.69
4151	4457	1.601419	CGACGGCCAGGAGACCTAAA	61.601	60.000	2.24	0.00	29.64	1.85
4152	4458	0.175989	GACGGCCAGGAGACCTAAAG	59.824	60.000	2.24	0.00	29.64	1.85
4153	4459	1.265454	ACGGCCAGGAGACCTAAAGG	61.265	60.000	2.24	0.00	42.17	3.11
4154	4460	1.224870	GGCCAGGAGACCTAAAGGC	59.775	63.158	0.00	8.52	38.87	4.35
4155	4461	1.562672	GGCCAGGAGACCTAAAGGCA	61.563	60.000	15.89	0.00	40.63	4.75
4156	4462	0.393132	GCCAGGAGACCTAAAGGCAC	60.393	60.000	11.18	0.00	39.25	5.01
4157	4463	1.280457	CCAGGAGACCTAAAGGCACT	58.720	55.000	0.00	0.00	39.32	4.40
4158	4464	1.208293	CCAGGAGACCTAAAGGCACTC	59.792	57.143	12.53	12.53	39.49	3.51
4160	4466	0.175989	GGAGACCTAAAGGCACTCCG	59.824	60.000	19.88	0.00	45.12	4.63
4161	4467	0.460459	GAGACCTAAAGGCACTCCGC	60.460	60.000	10.76	0.00	38.49	5.54
4162	4468	1.192146	AGACCTAAAGGCACTCCGCA	61.192	55.000	0.00	0.00	45.17	5.69
4163	4469	1.003718	ACCTAAAGGCACTCCGCAC	60.004	57.895	0.00	0.00	45.17	5.34
4164	4470	2.100631	CCTAAAGGCACTCCGCACG	61.101	63.158	0.00	0.00	45.17	5.34
4165	4471	2.740714	CTAAAGGCACTCCGCACGC	61.741	63.158	0.00	0.00	45.17	5.34
4166	4472	3.234630	TAAAGGCACTCCGCACGCT	62.235	57.895	0.00	0.00	45.17	5.07
4167	4473	1.879737	TAAAGGCACTCCGCACGCTA	61.880	55.000	0.00	0.00	45.17	4.26
4168	4474	2.725203	AAAGGCACTCCGCACGCTAA	62.725	55.000	0.00	0.00	45.17	3.09
4169	4475	3.488090	GGCACTCCGCACGCTAAC	61.488	66.667	0.00	0.00	45.17	2.34
4171	4477	2.126618	CACTCCGCACGCTAACGA	60.127	61.111	0.00	0.00	43.93	3.85
4172	4478	1.516386	CACTCCGCACGCTAACGAT	60.516	57.895	0.00	0.00	43.93	3.73
4173	4479	1.226603	ACTCCGCACGCTAACGATC	60.227	57.895	0.00	0.00	43.93	3.69
4174	4480	2.277692	TCCGCACGCTAACGATCG	60.278	61.111	14.88	14.88	43.93	3.69
4175	4481	3.320078	CCGCACGCTAACGATCGG	61.320	66.667	20.98	3.20	45.24	4.18
4176	4482	2.578713	CGCACGCTAACGATCGGT	60.579	61.111	20.98	16.80	43.93	4.69
4177	4483	2.156446	CGCACGCTAACGATCGGTT	61.156	57.895	20.98	13.31	43.93	4.44
4178	4484	0.862701	CGCACGCTAACGATCGGTTA	60.863	55.000	20.98	13.71	43.93	2.85
4179	4485	1.484356	GCACGCTAACGATCGGTTAT	58.516	50.000	20.98	5.17	43.93	1.89
4180	4486	1.856597	GCACGCTAACGATCGGTTATT	59.143	47.619	20.98	7.00	43.93	1.40
4181	4487	3.044986	GCACGCTAACGATCGGTTATTA	58.955	45.455	20.98	7.84	43.93	0.98
4182	4488	3.486841	GCACGCTAACGATCGGTTATTAA	59.513	43.478	20.98	0.00	43.93	1.40
4183	4489	4.374707	GCACGCTAACGATCGGTTATTAAG	60.375	45.833	20.98	7.84	43.93	1.85
4184	4490	4.736793	CACGCTAACGATCGGTTATTAAGT	59.263	41.667	20.98	8.66	43.93	2.24
4185	4491	5.909054	CACGCTAACGATCGGTTATTAAGTA	59.091	40.000	20.98	0.00	43.93	2.24
4186	4492	6.085979	CACGCTAACGATCGGTTATTAAGTAG	59.914	42.308	20.98	5.46	43.93	2.57
4187	4493	5.058977	CGCTAACGATCGGTTATTAAGTAGC	59.941	44.000	20.98	14.65	43.93	3.58
4188	4494	6.148264	GCTAACGATCGGTTATTAAGTAGCT	58.852	40.000	20.98	0.00	40.22	3.32
4189	4495	6.640092	GCTAACGATCGGTTATTAAGTAGCTT	59.360	38.462	20.98	1.59	40.22	3.74

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
272	316	4.714632	CACTACTCCAGGAAGGTTTTTCA	58.285	43.478	0.00	0.00	39.02	2.69
631	849	7.763071	GGACAGTTTAGTTTACGGTCTAATCAT	59.237	37.037	0.00	0.00	39.59	2.45
670	888	3.128764	CAGAATCAACAGCAGATGCATGT	59.871	43.478	2.46	0.00	45.16	3.21
690	908	8.939929	TGAACATTAGAGAGCATTAACTTTCAG	58.060	33.333	0.00	0.00	0.00	3.02
1059	1279	5.588845	TCCTCATCTTCTTCTTCTCCTTCT	58.411	41.667	0.00	0.00	0.00	2.85
1073	1293	7.376335	TCTTCTTCATCATCATCCTCATCTT	57.624	36.000	0.00	0.00	0.00	2.40
1074	1294	6.997942	TCTTCTTCATCATCATCCTCATCT	57.002	37.500	0.00	0.00	0.00	2.90
1075	1295	7.443477	TCTTCTTCTTCATCATCATCCTCATC	58.557	38.462	0.00	0.00	0.00	2.92
1298	1566	5.863397	CGCAATGAACTTGTTCCATGTTTAT	59.137	36.000	10.51	0.00	37.18	1.40
1350	1618	7.289317	TGTCCAGAAACTCTAAGAACCTTCTTA	59.711	37.037	7.19	7.19	45.17	2.10
1702	1971	4.251268	TCATCAATGAAGTGAGCTGTGAG	58.749	43.478	0.00	0.00	33.08	3.51
1770	2039	4.735132	GCTCCTGTGTGCGGCGTA	62.735	66.667	9.37	0.00	0.00	4.42
1790	2059	8.583296	TGAAATTCACCATGACATTGAACATTA	58.417	29.630	4.98	0.00	32.21	1.90
2282	2551	6.768381	GGCTTCATAAAATACCTTCAGTAGCT	59.232	38.462	0.00	0.00	33.42	3.32
2524	2794	3.885297	AGGCCAAATCGGAACTCAATATG	59.115	43.478	5.01	0.00	36.56	1.78
2680	2951	4.910304	AGCCATAGGATCTTCACCACTTAT	59.090	41.667	0.00	0.00	0.00	1.73
3511	3798	7.648142	TGGTTTGCAAGAAAATACACTTCTAG	58.352	34.615	0.00	0.00	32.77	2.43
3536	3823	6.494491	TGTTCCAGAAAACCAATTCATGATCT	59.506	34.615	0.00	0.00	0.00	2.75
3977	4277	0.469917	ATTGGGTACATGAGGCCGAG	59.530	55.000	0.00	0.00	0.00	4.63
4038	4338	1.098712	GGTCAAAACGTGAGGCCACA	61.099	55.000	5.01	0.25	43.34	4.17
4110	4416	1.002087	GTGGTTGGATCTTGGTCGAGT	59.998	52.381	0.00	0.00	0.00	4.18
4111	4417	1.276421	AGTGGTTGGATCTTGGTCGAG	59.724	52.381	0.00	0.00	0.00	4.04
4112	4418	1.275291	GAGTGGTTGGATCTTGGTCGA	59.725	52.381	0.00	0.00	0.00	4.20
4113	4419	1.726853	GAGTGGTTGGATCTTGGTCG	58.273	55.000	0.00	0.00	0.00	4.79
4114	4420	1.275291	TCGAGTGGTTGGATCTTGGTC	59.725	52.381	0.00	0.00	0.00	4.02
4115	4421	1.002087	GTCGAGTGGTTGGATCTTGGT	59.998	52.381	0.00	0.00	0.00	3.67
4116	4422	1.726853	GTCGAGTGGTTGGATCTTGG	58.273	55.000	0.00	0.00	0.00	3.61
4117	4423	1.350193	CGTCGAGTGGTTGGATCTTG	58.650	55.000	0.00	0.00	0.00	3.02
4118	4424	0.246635	CCGTCGAGTGGTTGGATCTT	59.753	55.000	0.00	0.00	0.00	2.40
4119	4425	1.890894	CCGTCGAGTGGTTGGATCT	59.109	57.895	0.00	0.00	0.00	2.75
4120	4426	1.810030	GCCGTCGAGTGGTTGGATC	60.810	63.158	5.58	0.00	0.00	3.36
4121	4427	2.264794	GCCGTCGAGTGGTTGGAT	59.735	61.111	5.58	0.00	0.00	3.41
4122	4428	3.998672	GGCCGTCGAGTGGTTGGA	61.999	66.667	5.58	0.00	0.00	3.53
4123	4429	4.308458	TGGCCGTCGAGTGGTTGG	62.308	66.667	0.00	0.00	0.00	3.77
4124	4430	2.738521	CTGGCCGTCGAGTGGTTG	60.739	66.667	0.00	0.00	0.00	3.77
4125	4431	4.003788	CCTGGCCGTCGAGTGGTT	62.004	66.667	0.00	0.00	0.00	3.67
4126	4432	4.988716	TCCTGGCCGTCGAGTGGT	62.989	66.667	0.00	0.00	0.00	4.16
4127	4433	4.135153	CTCCTGGCCGTCGAGTGG	62.135	72.222	0.00	0.00	0.00	4.00
4128	4434	3.062466	TCTCCTGGCCGTCGAGTG	61.062	66.667	11.93	0.00	0.00	3.51
4129	4435	3.063084	GTCTCCTGGCCGTCGAGT	61.063	66.667	11.93	0.00	0.00	4.18
4130	4436	2.888464	TAGGTCTCCTGGCCGTCGAG	62.888	65.000	0.00	2.38	34.61	4.04
4131	4437	2.488771	TTAGGTCTCCTGGCCGTCGA	62.489	60.000	0.00	0.00	34.61	4.20
4132	4438	1.601419	TTTAGGTCTCCTGGCCGTCG	61.601	60.000	0.00	0.00	34.61	5.12
4133	4439	0.175989	CTTTAGGTCTCCTGGCCGTC	59.824	60.000	0.00	0.00	34.61	4.79
4134	4440	1.265454	CCTTTAGGTCTCCTGGCCGT	61.265	60.000	0.00	0.00	34.61	5.68
4135	4441	1.522569	CCTTTAGGTCTCCTGGCCG	59.477	63.158	0.00	0.00	34.61	6.13
4136	4442	1.224870	GCCTTTAGGTCTCCTGGCC	59.775	63.158	0.00	0.00	35.11	5.36
4137	4443	0.393132	GTGCCTTTAGGTCTCCTGGC	60.393	60.000	8.19	8.19	39.69	4.85
4138	4444	1.208293	GAGTGCCTTTAGGTCTCCTGG	59.792	57.143	10.06	0.00	34.61	4.45
4139	4445	1.208293	GGAGTGCCTTTAGGTCTCCTG	59.792	57.143	22.70	0.00	45.54	3.86
4140	4446	1.574263	GGAGTGCCTTTAGGTCTCCT	58.426	55.000	22.70	6.62	45.54	3.69
4141	4447	0.175989	CGGAGTGCCTTTAGGTCTCC	59.824	60.000	21.32	21.32	45.55	3.71
4142	4448	0.460459	GCGGAGTGCCTTTAGGTCTC	60.460	60.000	11.75	11.75	37.76	3.36
4143	4449	1.192146	TGCGGAGTGCCTTTAGGTCT	61.192	55.000	0.00	0.00	45.60	3.85
4144	4450	1.019805	GTGCGGAGTGCCTTTAGGTC	61.020	60.000	0.00	0.00	45.60	3.85
4145	4451	1.003718	GTGCGGAGTGCCTTTAGGT	60.004	57.895	0.00	0.00	45.60	3.08
4146	4452	2.100631	CGTGCGGAGTGCCTTTAGG	61.101	63.158	0.00	0.00	45.60	2.69
4147	4453	2.740714	GCGTGCGGAGTGCCTTTAG	61.741	63.158	0.00	0.00	45.60	1.85
4148	4454	1.879737	TAGCGTGCGGAGTGCCTTTA	61.880	55.000	0.00	0.00	45.60	1.85
4149	4455	2.725203	TTAGCGTGCGGAGTGCCTTT	62.725	55.000	0.00	0.00	45.60	3.11
4150	4456	3.234630	TTAGCGTGCGGAGTGCCTT	62.235	57.895	0.00	0.00	45.60	4.35
4151	4457	3.691342	TTAGCGTGCGGAGTGCCT	61.691	61.111	0.00	0.00	45.60	4.75
4152	4458	3.488090	GTTAGCGTGCGGAGTGCC	61.488	66.667	0.00	0.00	45.60	5.01
4153	4459	3.838795	CGTTAGCGTGCGGAGTGC	61.839	66.667	0.00	0.00	46.70	4.40
4154	4460	1.472276	GATCGTTAGCGTGCGGAGTG	61.472	60.000	0.00	0.00	39.49	3.51
4155	4461	1.226603	GATCGTTAGCGTGCGGAGT	60.227	57.895	0.00	0.00	39.49	3.85
4156	4462	2.286559	CGATCGTTAGCGTGCGGAG	61.287	63.158	7.03	0.00	39.49	4.63
4157	4463	2.277692	CGATCGTTAGCGTGCGGA	60.278	61.111	7.03	0.00	39.49	5.54
4158	4464	3.320078	CCGATCGTTAGCGTGCGG	61.320	66.667	15.09	16.82	43.97	5.69
4159	4465	0.862701	TAACCGATCGTTAGCGTGCG	60.863	55.000	15.09	4.23	39.49	5.34
4160	4466	1.484356	ATAACCGATCGTTAGCGTGC	58.516	50.000	15.09	0.00	40.27	5.34
4161	4467	4.736793	ACTTAATAACCGATCGTTAGCGTG	59.263	41.667	15.09	0.00	40.27	5.34
4162	4468	4.925068	ACTTAATAACCGATCGTTAGCGT	58.075	39.130	15.09	0.80	40.27	5.07
4163	4469	5.058977	GCTACTTAATAACCGATCGTTAGCG	59.941	44.000	15.09	0.08	40.27	4.26
4164	4470	6.148264	AGCTACTTAATAACCGATCGTTAGC	58.852	40.000	15.09	11.32	40.27	3.09

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.