Multiple sequence alignment - TraesCS5A01G144300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G144300 chr5A 100.000 6522 0 0 1 6522 320262615 320269136 0.000000e+00 12044.0
1 TraesCS5A01G144300 chr5B 93.227 4400 152 57 2157 6471 270674881 270679219 0.000000e+00 6340.0
2 TraesCS5A01G144300 chr5B 93.191 1542 72 18 578 2103 270673356 270674880 0.000000e+00 2235.0
3 TraesCS5A01G144300 chr5B 100.000 32 0 0 6491 6522 239325710 239325679 7.060000e-05 60.2
4 TraesCS5A01G144300 chr5D 94.152 2035 67 18 2403 4411 234058458 234056450 0.000000e+00 3051.0
5 TraesCS5A01G144300 chr5D 93.270 2110 59 26 4406 6466 234056370 234054295 0.000000e+00 3033.0
6 TraesCS5A01G144300 chr5D 93.136 1792 68 26 641 2403 234060530 234058765 0.000000e+00 2577.0
7 TraesCS5A01G144300 chr5D 88.727 479 45 5 58 530 503736543 503736068 1.580000e-160 577.0
8 TraesCS5A01G144300 chr7D 89.895 475 43 3 58 528 501382016 501382489 2.010000e-169 606.0
9 TraesCS5A01G144300 chr6D 89.727 477 43 4 58 530 45624467 45624941 7.230000e-169 604.0
10 TraesCS5A01G144300 chr6D 88.842 475 47 4 58 528 349902476 349902948 4.380000e-161 579.0
11 TraesCS5A01G144300 chr6D 88.866 476 43 7 58 528 45499433 45498963 1.580000e-160 577.0
12 TraesCS5A01G144300 chr6D 88.632 475 49 5 58 528 344156595 344156122 2.040000e-159 573.0
13 TraesCS5A01G144300 chr6D 98.113 53 1 0 1 53 45499520 45499468 6.960000e-15 93.5
14 TraesCS5A01G144300 chr6D 98.113 53 1 0 1 53 45624380 45624432 6.960000e-15 93.5
15 TraesCS5A01G144300 chr1D 89.474 475 42 5 58 528 409814133 409814603 1.570000e-165 593.0
16 TraesCS5A01G144300 chr1D 85.321 545 58 11 1 528 400032422 400031883 1.600000e-150 544.0
17 TraesCS5A01G144300 chr2D 89.121 478 43 6 58 530 567014096 567013623 2.620000e-163 586.0
18 TraesCS5A01G144300 chr4B 87.542 297 34 2 1769 2062 147704156 147703860 2.250000e-89 340.0
19 TraesCS5A01G144300 chr4B 86.486 296 34 5 1036 1328 147705744 147705452 2.930000e-83 320.0
20 TraesCS5A01G144300 chr4B 88.776 196 22 0 2564 2759 147703476 147703281 2.350000e-59 241.0
21 TraesCS5A01G144300 chr4B 76.778 478 70 30 3633 4099 147702054 147701607 5.090000e-56 230.0
22 TraesCS5A01G144300 chr4B 76.524 328 56 13 4820 5142 147699026 147698715 6.770000e-35 159.0
23 TraesCS5A01G144300 chr4B 100.000 30 0 0 6493 6522 92549626 92549655 1.000000e-03 56.5
24 TraesCS5A01G144300 chr4D 87.162 296 32 5 1036 1328 103491359 103491067 1.360000e-86 331.0
25 TraesCS5A01G144300 chr4D 89.796 196 20 0 2564 2759 103486176 103485981 1.090000e-62 252.0
26 TraesCS5A01G144300 chr4D 91.971 137 10 1 73 209 165895068 165894933 2.400000e-44 191.0
27 TraesCS5A01G144300 chr4D 76.139 373 67 16 4774 5142 103482001 103481647 6.720000e-40 176.0
28 TraesCS5A01G144300 chr4D 84.293 191 18 6 3909 4099 103484490 103484312 6.720000e-40 176.0
29 TraesCS5A01G144300 chr4D 90.698 129 7 4 3633 3758 103484759 103484633 4.050000e-37 167.0
30 TraesCS5A01G144300 chr4D 91.429 105 7 1 3378 3482 103485049 103484947 6.820000e-30 143.0
31 TraesCS5A01G144300 chr4D 98.113 53 1 0 1 53 76606141 76606089 6.960000e-15 93.5
32 TraesCS5A01G144300 chr4D 98.113 53 1 0 1 53 405319576 405319524 6.960000e-15 93.5
33 TraesCS5A01G144300 chr4D 98.113 53 1 0 1 53 500474264 500474316 6.960000e-15 93.5
34 TraesCS5A01G144300 chr4A 86.755 302 34 5 1030 1328 471695890 471696188 1.360000e-86 331.0
35 TraesCS5A01G144300 chr4A 89.109 202 22 0 2558 2759 471697980 471698181 1.090000e-62 252.0
36 TraesCS5A01G144300 chr4A 76.987 478 69 29 3633 4099 471699444 471699891 1.090000e-57 235.0
37 TraesCS5A01G144300 chr4A 76.139 373 66 17 4774 5142 471703853 471704206 2.420000e-39 174.0
38 TraesCS5A01G144300 chr4A 89.474 114 10 1 3369 3482 471699096 471699207 6.820000e-30 143.0
39 TraesCS5A01G144300 chrUn 88.235 102 11 1 99 199 295922817 295922918 3.190000e-23 121.0
40 TraesCS5A01G144300 chr7A 95.000 60 3 0 1 60 511494222 511494281 1.940000e-15 95.3
41 TraesCS5A01G144300 chr6B 100.000 36 0 0 6487 6522 346416948 346416913 4.220000e-07 67.6
42 TraesCS5A01G144300 chr7B 100.000 32 0 0 6491 6522 516450101 516450132 7.060000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G144300 chr5A 320262615 320269136 6521 False 12044.00 12044 100.000000 1 6522 1 chr5A.!!$F1 6521
1 TraesCS5A01G144300 chr5B 270673356 270679219 5863 False 4287.50 6340 93.209000 578 6471 2 chr5B.!!$F1 5893
2 TraesCS5A01G144300 chr5D 234054295 234060530 6235 True 2887.00 3051 93.519333 641 6466 3 chr5D.!!$R2 5825
3 TraesCS5A01G144300 chr6D 45624380 45624941 561 False 348.75 604 93.920000 1 530 2 chr6D.!!$F2 529
4 TraesCS5A01G144300 chr6D 45498963 45499520 557 True 335.25 577 93.489500 1 528 2 chr6D.!!$R2 527
5 TraesCS5A01G144300 chr1D 400031883 400032422 539 True 544.00 544 85.321000 1 528 1 chr1D.!!$R1 527
6 TraesCS5A01G144300 chr4B 147698715 147705744 7029 True 258.00 340 83.221200 1036 5142 5 chr4B.!!$R1 4106
7 TraesCS5A01G144300 chr4A 471695890 471704206 8316 False 227.00 331 83.692800 1030 5142 5 chr4A.!!$F1 4112

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
564 611 0.248215 GCATCGGAAAAGTGCATCGG 60.248 55.000 0.00 0.0 38.68 4.18 F
1410 1475 0.037326 GAGGTGTTCTCACGCATCCA 60.037 55.000 0.00 0.0 44.68 3.41 F
2464 3716 0.183492 ATGGGCGCATGGAATACACT 59.817 50.000 16.43 0.0 0.00 3.55 F
2668 3922 0.329261 TTCTGGGCATGGTCAGAAGG 59.671 55.000 0.00 0.0 42.81 3.46 F
3533 5430 0.664761 CAGCCGCACTTCCCATATTG 59.335 55.000 0.00 0.0 0.00 1.90 F
4239 6525 1.599576 GGTCAGTCTGCCTTCTCCC 59.400 63.158 0.00 0.0 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1925 2866 0.179089 CTGGGAGCAGACAAGGATCG 60.179 60.000 0.00 0.0 0.00 3.69 R
2643 3897 1.355381 TGACCATGCCCAGAACTGAAT 59.645 47.619 3.19 0.0 0.00 2.57 R
4143 6135 1.977854 TGTGGGCACTCAATGAGTAGT 59.022 47.619 16.28 0.0 41.37 2.73 R
4239 6525 2.109799 CAGCATAGGTGAGGCCGG 59.890 66.667 0.00 0.0 43.70 6.13 R
5270 10863 2.439507 ACAGGAGAAAGCTTCACCAGAA 59.560 45.455 0.00 0.0 42.12 3.02 R
5700 11306 1.003233 GAAGGTGGACGGAGGAAACAT 59.997 52.381 0.00 0.0 0.00 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 4.864334 GCCTGCTACTGGCCGCAT 62.864 66.667 3.36 0.00 41.62 4.73
55 56 2.898840 CCTGCTACTGGCCGCATG 60.899 66.667 3.36 0.00 40.92 4.06
64 95 4.418328 GGCCGCATGGGTGGTACA 62.418 66.667 9.14 0.00 46.76 2.90
92 123 2.284625 TCGTGTCCCCTCTGCCAT 60.285 61.111 0.00 0.00 0.00 4.40
96 127 3.083997 GTCCCCTCTGCCATCGGT 61.084 66.667 0.00 0.00 0.00 4.69
107 138 1.153706 CCATCGGTAAAGACGGCGT 60.154 57.895 14.65 14.65 0.00 5.68
163 194 2.888534 GAAAGCGCGGGCGTGATA 60.889 61.111 19.46 0.00 46.35 2.15
280 320 1.081277 GGGGAGAGAGGGTGGAAGT 59.919 63.158 0.00 0.00 0.00 3.01
281 321 1.268283 GGGGAGAGAGGGTGGAAGTG 61.268 65.000 0.00 0.00 0.00 3.16
282 322 0.252284 GGGAGAGAGGGTGGAAGTGA 60.252 60.000 0.00 0.00 0.00 3.41
340 385 3.647771 GGAGGGGACAAGGGCGTT 61.648 66.667 0.00 0.00 0.00 4.84
409 455 2.440247 GGGCCGAAGATGGGTTGG 60.440 66.667 0.00 0.00 0.00 3.77
450 496 2.937469 TTATCCGTTTAAGACCGCGA 57.063 45.000 8.23 0.00 0.00 5.87
460 506 4.125695 GACCGCGAGTTAGGCCGT 62.126 66.667 8.23 0.00 0.00 5.68
470 516 1.206371 AGTTAGGCCGTGCTATTCGTT 59.794 47.619 0.00 0.00 0.00 3.85
481 527 4.093703 CGTGCTATTCGTTCATTTTACCCA 59.906 41.667 0.00 0.00 0.00 4.51
484 530 7.033185 GTGCTATTCGTTCATTTTACCCAAAT 58.967 34.615 0.00 0.00 35.24 2.32
485 531 8.185505 GTGCTATTCGTTCATTTTACCCAAATA 58.814 33.333 0.00 0.00 32.90 1.40
492 539 6.560711 GTTCATTTTACCCAAATAGACGCAT 58.439 36.000 0.00 0.00 32.90 4.73
496 543 0.828022 ACCCAAATAGACGCATCCGA 59.172 50.000 0.00 0.00 38.29 4.55
508 555 1.103398 GCATCCGAACAAGATGGGGG 61.103 60.000 3.19 0.00 41.22 5.40
530 577 1.379309 GCGGTGGAATGGGCCTTAA 60.379 57.895 4.53 0.00 0.00 1.85
531 578 0.968393 GCGGTGGAATGGGCCTTAAA 60.968 55.000 4.53 0.00 0.00 1.52
532 579 1.551452 CGGTGGAATGGGCCTTAAAA 58.449 50.000 4.53 0.00 0.00 1.52
533 580 1.476488 CGGTGGAATGGGCCTTAAAAG 59.524 52.381 4.53 0.00 0.00 2.27
534 581 1.207089 GGTGGAATGGGCCTTAAAAGC 59.793 52.381 4.53 0.00 0.00 3.51
543 590 0.521735 GCCTTAAAAGCCAGGTGTCG 59.478 55.000 0.00 0.00 32.06 4.35
544 591 1.880646 GCCTTAAAAGCCAGGTGTCGA 60.881 52.381 0.00 0.00 32.06 4.20
545 592 2.076863 CCTTAAAAGCCAGGTGTCGAG 58.923 52.381 0.00 0.00 0.00 4.04
546 593 1.464997 CTTAAAAGCCAGGTGTCGAGC 59.535 52.381 0.00 0.00 0.00 5.03
547 594 0.394938 TAAAAGCCAGGTGTCGAGCA 59.605 50.000 0.00 0.00 0.00 4.26
548 595 0.250901 AAAAGCCAGGTGTCGAGCAT 60.251 50.000 0.00 0.00 0.00 3.79
549 596 0.674895 AAAGCCAGGTGTCGAGCATC 60.675 55.000 0.00 0.00 0.00 3.91
562 609 2.465210 GAGCATCGGAAAAGTGCATC 57.535 50.000 4.34 0.00 41.19 3.91
563 610 0.729116 AGCATCGGAAAAGTGCATCG 59.271 50.000 4.34 0.00 41.19 3.84
564 611 0.248215 GCATCGGAAAAGTGCATCGG 60.248 55.000 0.00 0.00 38.68 4.18
565 612 0.248215 CATCGGAAAAGTGCATCGGC 60.248 55.000 0.00 0.00 41.68 5.54
566 613 1.705337 ATCGGAAAAGTGCATCGGCG 61.705 55.000 0.00 0.00 45.35 6.46
567 614 2.677003 CGGAAAAGTGCATCGGCGT 61.677 57.895 6.85 0.00 45.35 5.68
568 615 1.579429 GGAAAAGTGCATCGGCGTT 59.421 52.632 6.85 0.00 45.35 4.84
569 616 0.454452 GGAAAAGTGCATCGGCGTTC 60.454 55.000 6.85 0.00 45.35 3.95
570 617 0.789383 GAAAAGTGCATCGGCGTTCG 60.789 55.000 6.85 0.00 45.35 3.95
571 618 2.182614 AAAAGTGCATCGGCGTTCGG 62.183 55.000 6.85 0.00 45.35 4.30
581 628 2.097728 GCGTTCGGGCGTTGAATC 59.902 61.111 2.03 0.00 0.00 2.52
582 629 2.673114 GCGTTCGGGCGTTGAATCA 61.673 57.895 2.03 0.00 0.00 2.57
603 650 1.217244 GGTGAAGGCGACCGTACAT 59.783 57.895 0.00 0.00 0.00 2.29
604 651 0.804933 GGTGAAGGCGACCGTACATC 60.805 60.000 0.00 0.00 0.00 3.06
623 671 3.173668 TCGGGTCGACAAAATATCCTG 57.826 47.619 18.91 2.18 0.00 3.86
849 901 3.134127 ATTCGCAGCCCGCTTTCC 61.134 61.111 0.00 0.00 39.08 3.13
880 932 2.743718 CACCACGCCTCCTCAACT 59.256 61.111 0.00 0.00 0.00 3.16
945 997 2.808206 CCCTAGATCCCGCCACACC 61.808 68.421 0.00 0.00 0.00 4.16
1007 1066 1.198713 CTGCCTGTCACTATGGAGGT 58.801 55.000 0.00 0.00 0.00 3.85
1289 1351 2.783275 CGACGACGAGATCACCGT 59.217 61.111 12.03 12.03 43.56 4.83
1410 1475 0.037326 GAGGTGTTCTCACGCATCCA 60.037 55.000 0.00 0.00 44.68 3.41
1412 1477 1.626654 GGTGTTCTCACGCATCCACG 61.627 60.000 0.00 0.00 44.68 4.94
1483 1558 2.950309 ACCGAGTAGATGCTACGATGTT 59.050 45.455 0.00 0.00 0.00 2.71
1503 1578 4.150980 TGTTAACGCTTGAACTATGTTCGG 59.849 41.667 0.26 3.37 0.00 4.30
1504 1579 2.450609 ACGCTTGAACTATGTTCGGT 57.549 45.000 6.05 0.06 0.00 4.69
1506 1581 2.029290 ACGCTTGAACTATGTTCGGTCT 60.029 45.455 6.05 0.00 0.00 3.85
1507 1582 2.345641 CGCTTGAACTATGTTCGGTCTG 59.654 50.000 6.05 0.00 0.00 3.51
1547 1911 2.401583 ATTGCTGTATGGCACGAGAA 57.598 45.000 0.00 0.00 42.27 2.87
1624 1988 5.119279 CACTGGATAGACTGTAATAATGCGC 59.881 44.000 0.00 0.00 0.00 6.09
1734 2103 2.157834 TGTAACTAACGCTGTGGGTG 57.842 50.000 0.00 0.00 0.00 4.61
1735 2104 1.270412 TGTAACTAACGCTGTGGGTGG 60.270 52.381 0.00 0.00 0.00 4.61
1736 2105 1.050204 TAACTAACGCTGTGGGTGGT 58.950 50.000 0.00 0.00 0.00 4.16
1739 2108 1.066430 ACTAACGCTGTGGGTGGTATG 60.066 52.381 0.00 0.00 0.00 2.39
1740 2109 0.391927 TAACGCTGTGGGTGGTATGC 60.392 55.000 0.00 0.00 0.00 3.14
1741 2110 2.046411 CGCTGTGGGTGGTATGCA 60.046 61.111 0.00 0.00 0.00 3.96
1743 2112 1.303236 GCTGTGGGTGGTATGCACA 60.303 57.895 0.00 0.00 0.00 4.57
1744 2113 0.893270 GCTGTGGGTGGTATGCACAA 60.893 55.000 0.00 0.00 0.00 3.33
1745 2114 1.838112 CTGTGGGTGGTATGCACAAT 58.162 50.000 0.00 0.00 0.00 2.71
1746 2115 1.473677 CTGTGGGTGGTATGCACAATG 59.526 52.381 0.00 0.00 0.00 2.82
1751 2120 2.425668 GGGTGGTATGCACAATGGTAAC 59.574 50.000 0.00 0.00 0.00 2.50
1892 2833 5.645497 AGACTTCATGAACAAGCTATTCACC 59.355 40.000 13.92 2.81 38.84 4.02
1925 2866 3.668447 AGATTACATCATCCATGGCGAC 58.332 45.455 6.96 0.00 36.72 5.19
2078 3023 7.548196 TTTCTGTTCCTGTACTTTACTGTTG 57.452 36.000 0.00 0.00 0.00 3.33
2091 3036 7.023197 ACTTTACTGTTGACGTTTGCTTTAT 57.977 32.000 0.00 0.00 0.00 1.40
2120 3065 6.799512 ACAAAATTGGAGTCTGAAACTTCTG 58.200 36.000 0.00 0.00 38.74 3.02
2193 3138 7.437748 AGAACCAAATCTTATAGTGATCTCCG 58.562 38.462 0.00 0.00 0.00 4.63
2197 3142 8.524487 ACCAAATCTTATAGTGATCTCCGATAC 58.476 37.037 0.00 0.00 0.00 2.24
2259 3204 8.904099 TGACGAGACTATCATTCACTAGATTA 57.096 34.615 0.00 0.00 0.00 1.75
2449 3701 1.074423 CTGGCCAGGATGCTATGGG 59.926 63.158 26.14 0.00 37.05 4.00
2464 3716 0.183492 ATGGGCGCATGGAATACACT 59.817 50.000 16.43 0.00 0.00 3.55
2643 3897 2.300152 CCACTCTTCACTACAGAGGCAA 59.700 50.000 2.18 0.00 42.00 4.52
2668 3922 0.329261 TTCTGGGCATGGTCAGAAGG 59.671 55.000 0.00 0.00 42.81 3.46
2981 4841 5.954335 AGTTCAAAGGCATGTGCTAAATAC 58.046 37.500 4.84 0.00 41.70 1.89
2985 4845 1.211949 AGGCATGTGCTAAATACCCGT 59.788 47.619 4.84 0.00 41.70 5.28
2988 4848 2.223479 GCATGTGCTAAATACCCGTTGG 60.223 50.000 0.00 0.00 38.21 3.77
3096 4975 3.012934 AGTGTTAACTTGTGCCCTGTT 57.987 42.857 7.22 0.00 30.14 3.16
3140 5020 1.098050 GGAAGTGTGGCAGCAATAGG 58.902 55.000 0.00 0.00 0.00 2.57
3198 5078 4.274069 CGATTGTCGCATCCACAATAAAG 58.726 43.478 0.00 0.00 43.16 1.85
3533 5430 0.664761 CAGCCGCACTTCCCATATTG 59.335 55.000 0.00 0.00 0.00 1.90
3610 5585 6.316140 GCAAACTGAACTTTCCTTTCCAAATT 59.684 34.615 0.00 0.00 0.00 1.82
3887 5878 9.823098 CATTATATTCAGTCTAGATTTTGCTGC 57.177 33.333 0.00 0.00 0.00 5.25
4041 6032 6.618287 TTCAAAAGACATGGTGAGTTGTAG 57.382 37.500 0.00 0.00 0.00 2.74
4134 6126 6.770785 ACTATTTCCTTGAACACTGCACTTAA 59.229 34.615 0.00 0.00 0.00 1.85
4138 6130 4.130118 CCTTGAACACTGCACTTAAGAGT 58.870 43.478 10.09 0.00 36.25 3.24
4140 6132 5.758296 CCTTGAACACTGCACTTAAGAGTTA 59.242 40.000 10.09 0.00 32.54 2.24
4141 6133 6.260050 CCTTGAACACTGCACTTAAGAGTTAA 59.740 38.462 10.09 0.00 32.54 2.01
4143 6135 6.578944 TGAACACTGCACTTAAGAGTTAAGA 58.421 36.000 10.09 0.00 44.19 2.10
4200 6192 5.086104 AGAAACATGTATCCTAGCACGTT 57.914 39.130 0.00 0.00 0.00 3.99
4239 6525 1.599576 GGTCAGTCTGCCTTCTCCC 59.400 63.158 0.00 0.00 0.00 4.30
4260 6546 2.750657 GCCTCACCTATGCTGGGCT 61.751 63.158 0.00 0.00 34.80 5.19
4435 6805 8.084684 TCTTTAAAGGAGGTAGAAACGTAGAAC 58.915 37.037 15.13 0.00 0.00 3.01
4570 6946 4.514781 AGAACATGACACTTACGCTGTA 57.485 40.909 0.00 0.00 0.00 2.74
4577 6953 4.740268 TGACACTTACGCTGTACCAATAG 58.260 43.478 0.00 0.00 0.00 1.73
4594 6970 5.707298 ACCAATAGAACTCACAATTCCACAG 59.293 40.000 0.00 0.00 0.00 3.66
4597 6973 4.437682 AGAACTCACAATTCCACAGGAA 57.562 40.909 0.30 0.30 46.39 3.36
4609 6985 9.927668 ACAATTCCACAGGAAGTATTAAATTTG 57.072 29.630 0.00 3.67 45.48 2.32
4625 7007 5.637006 AAATTTGAATACGTGCTGGCTTA 57.363 34.783 0.00 0.00 0.00 3.09
4656 7038 3.112580 CAAGTTTTACTTTGGTGGCACG 58.887 45.455 12.17 0.00 36.03 5.34
4729 7125 4.770531 GCTTGGTCCCAAAGTTTAGGTATT 59.229 41.667 0.00 0.00 35.33 1.89
4738 7134 7.037873 TCCCAAAGTTTAGGTATTTCAGCTAGA 60.038 37.037 0.00 0.00 38.44 2.43
4848 10435 9.061435 CAGGAGTTCTCTAACTTCATTTTTCTT 57.939 33.333 0.00 0.00 46.09 2.52
4928 10515 4.075682 TGGATTTTGCGAAGGTAATCACA 58.924 39.130 0.00 0.00 0.00 3.58
5308 10901 6.046593 TCTCCTGTGTGTAGTTTTGTACTTG 58.953 40.000 0.00 0.00 38.33 3.16
5479 11072 3.897239 TGAAAAGAAGGAAGCCAGTGAA 58.103 40.909 0.00 0.00 0.00 3.18
5700 11306 2.206900 TGTGCTGGAGGGGGAAGA 59.793 61.111 0.00 0.00 0.00 2.87
5717 11323 0.613777 AGATGTTTCCTCCGTCCACC 59.386 55.000 0.00 0.00 0.00 4.61
5787 11393 1.001378 GCCTGCTGTTACCACAAGTTG 60.001 52.381 0.00 0.00 30.36 3.16
6067 11683 6.117488 TGATGGTATCATGATGTGGATATGC 58.883 40.000 18.72 0.00 33.59 3.14
6102 11718 2.076100 TGACAAAATGGTCGCTAGCAG 58.924 47.619 16.45 7.87 40.72 4.24
6128 11744 2.653115 GAAGGCTGCCAAGTTGCC 59.347 61.111 22.65 0.00 46.42 4.52
6159 11775 2.186160 TTCAGCCTGGTGCACGTTG 61.186 57.895 11.45 5.75 44.83 4.10
6268 11884 1.077005 AGCCATTGTTTTGCCTCCCTA 59.923 47.619 0.00 0.00 0.00 3.53
6271 11887 2.755103 CCATTGTTTTGCCTCCCTACTC 59.245 50.000 0.00 0.00 0.00 2.59
6273 11889 4.324254 CCATTGTTTTGCCTCCCTACTCTA 60.324 45.833 0.00 0.00 0.00 2.43
6294 11911 6.241645 TCTATCTCGCTCTCATTTGGATCTA 58.758 40.000 0.00 0.00 0.00 1.98
6315 11932 7.875327 TCTAGAAACCTGTTGCTTAGTTTTT 57.125 32.000 0.00 0.00 32.80 1.94
6362 11979 1.884579 GTCGGTGAACTGGAGTGTCTA 59.115 52.381 0.00 0.00 0.00 2.59
6471 12088 1.076777 ACCTCATTTGCATCCGGGG 60.077 57.895 0.00 0.00 0.00 5.73
6472 12089 1.227102 CCTCATTTGCATCCGGGGA 59.773 57.895 0.00 0.00 0.00 4.81
6473 12090 1.103398 CCTCATTTGCATCCGGGGAC 61.103 60.000 0.00 0.00 0.00 4.46
6474 12091 0.394216 CTCATTTGCATCCGGGGACA 60.394 55.000 0.00 0.00 0.00 4.02
6475 12092 0.258484 TCATTTGCATCCGGGGACAT 59.742 50.000 0.00 0.00 0.00 3.06
6476 12093 0.386476 CATTTGCATCCGGGGACATG 59.614 55.000 0.00 0.00 0.00 3.21
6477 12094 0.756442 ATTTGCATCCGGGGACATGG 60.756 55.000 0.00 0.00 0.00 3.66
6478 12095 1.857638 TTTGCATCCGGGGACATGGA 61.858 55.000 0.00 0.00 38.73 3.41
6479 12096 1.644437 TTGCATCCGGGGACATGGAT 61.644 55.000 0.00 0.00 44.28 3.41
6480 12097 1.302832 GCATCCGGGGACATGGATC 60.303 63.158 0.00 0.00 42.08 3.36
6481 12098 2.055689 GCATCCGGGGACATGGATCA 62.056 60.000 0.00 0.00 42.08 2.92
6482 12099 0.250467 CATCCGGGGACATGGATCAC 60.250 60.000 0.00 0.00 42.08 3.06
6483 12100 0.400525 ATCCGGGGACATGGATCACT 60.401 55.000 0.00 0.00 40.39 3.41
6484 12101 1.048724 TCCGGGGACATGGATCACTC 61.049 60.000 0.00 0.00 29.32 3.51
6485 12102 1.050988 CCGGGGACATGGATCACTCT 61.051 60.000 0.00 0.00 0.00 3.24
6486 12103 0.105593 CGGGGACATGGATCACTCTG 59.894 60.000 0.00 0.00 0.00 3.35
6487 12104 0.471617 GGGGACATGGATCACTCTGG 59.528 60.000 0.00 0.00 0.00 3.86
6488 12105 0.471617 GGGACATGGATCACTCTGGG 59.528 60.000 0.00 0.00 0.00 4.45
6489 12106 0.471617 GGACATGGATCACTCTGGGG 59.528 60.000 0.00 0.00 0.00 4.96
6490 12107 1.500474 GACATGGATCACTCTGGGGA 58.500 55.000 0.00 0.00 0.00 4.81
6491 12108 1.415659 GACATGGATCACTCTGGGGAG 59.584 57.143 0.00 0.00 44.62 4.30
6492 12109 1.008815 ACATGGATCACTCTGGGGAGA 59.991 52.381 0.00 0.00 41.86 3.71
6493 12110 1.693062 CATGGATCACTCTGGGGAGAG 59.307 57.143 0.00 0.00 41.86 3.20
6494 12111 0.031716 TGGATCACTCTGGGGAGAGG 60.032 60.000 4.20 0.00 41.86 3.69
6495 12112 0.263172 GGATCACTCTGGGGAGAGGA 59.737 60.000 4.20 0.00 41.86 3.71
6496 12113 1.132881 GGATCACTCTGGGGAGAGGAT 60.133 57.143 4.20 4.05 41.86 3.24
6497 12114 1.969923 GATCACTCTGGGGAGAGGATG 59.030 57.143 4.20 0.00 41.86 3.51
6498 12115 0.712979 TCACTCTGGGGAGAGGATGT 59.287 55.000 4.20 0.00 41.86 3.06
6499 12116 1.118838 CACTCTGGGGAGAGGATGTC 58.881 60.000 4.20 0.00 41.86 3.06
6505 12122 2.501610 GGAGAGGATGTCCGCACC 59.498 66.667 5.59 4.66 39.48 5.01
6506 12123 2.501610 GAGAGGATGTCCGCACCC 59.498 66.667 5.59 0.00 42.08 4.61
6507 12124 2.284625 AGAGGATGTCCGCACCCA 60.285 61.111 5.59 0.00 42.08 4.51
6508 12125 2.125106 GAGGATGTCCGCACCCAC 60.125 66.667 0.00 0.00 42.08 4.61
6509 12126 4.082523 AGGATGTCCGCACCCACG 62.083 66.667 0.00 0.00 42.08 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 2.061578 TCGGCGATGTACCACCCAT 61.062 57.895 4.99 0.00 0.00 4.00
54 55 2.680707 TCGGCGATGTACCACCCA 60.681 61.111 4.99 0.00 0.00 4.51
55 56 2.202837 GTCGGCGATGTACCACCC 60.203 66.667 14.79 0.00 0.00 4.61
64 95 4.471726 GACACGACCGTCGGCGAT 62.472 66.667 27.00 17.39 45.59 4.58
92 123 2.176546 CGACGCCGTCTTTACCGA 59.823 61.111 16.07 0.00 0.00 4.69
96 127 0.031857 TTTGGTCGACGCCGTCTTTA 59.968 50.000 16.07 0.00 37.05 1.85
107 138 1.203994 GATCGAAGGAGGTTTGGTCGA 59.796 52.381 0.00 0.00 44.03 4.20
161 192 0.530650 CGTCTTGACATGGCCGCTAT 60.531 55.000 0.00 0.00 0.00 2.97
163 194 2.434884 CGTCTTGACATGGCCGCT 60.435 61.111 0.00 0.00 0.00 5.52
204 235 4.767255 CCTCCTCACCGTGCAGCC 62.767 72.222 0.00 0.00 0.00 4.85
280 320 0.185175 TAGCAGTCCCTCCGCTATCA 59.815 55.000 0.00 0.00 37.20 2.15
281 321 0.885196 CTAGCAGTCCCTCCGCTATC 59.115 60.000 0.00 0.00 37.60 2.08
282 322 0.186386 ACTAGCAGTCCCTCCGCTAT 59.814 55.000 0.00 0.00 37.60 2.97
379 425 4.056125 GGCCCAAACTTGCGCTCC 62.056 66.667 9.73 0.00 32.76 4.70
398 444 1.880646 CGTCCGTTTCCAACCCATCTT 60.881 52.381 0.00 0.00 0.00 2.40
399 445 0.321298 CGTCCGTTTCCAACCCATCT 60.321 55.000 0.00 0.00 0.00 2.90
433 479 0.529378 ACTCGCGGTCTTAAACGGAT 59.471 50.000 6.13 0.00 0.00 4.18
441 487 2.577593 GGCCTAACTCGCGGTCTT 59.422 61.111 6.13 0.00 0.00 3.01
444 490 4.430765 CACGGCCTAACTCGCGGT 62.431 66.667 6.13 0.00 40.03 5.68
450 496 0.822164 ACGAATAGCACGGCCTAACT 59.178 50.000 0.00 0.00 34.93 2.24
460 506 6.576662 TTTGGGTAAAATGAACGAATAGCA 57.423 33.333 0.00 0.00 0.00 3.49
470 516 5.298276 GGATGCGTCTATTTGGGTAAAATGA 59.702 40.000 5.77 0.00 38.93 2.57
481 527 3.857052 TCTTGTTCGGATGCGTCTATTT 58.143 40.909 6.49 0.00 0.00 1.40
484 530 2.481276 CCATCTTGTTCGGATGCGTCTA 60.481 50.000 6.49 0.00 39.19 2.59
485 531 1.645034 CATCTTGTTCGGATGCGTCT 58.355 50.000 6.49 0.00 34.97 4.18
492 539 2.674754 GCCCCCATCTTGTTCGGA 59.325 61.111 0.00 0.00 0.00 4.55
530 577 0.674895 GATGCTCGACACCTGGCTTT 60.675 55.000 0.00 0.00 0.00 3.51
531 578 1.078848 GATGCTCGACACCTGGCTT 60.079 57.895 0.00 0.00 0.00 4.35
532 579 2.581354 GATGCTCGACACCTGGCT 59.419 61.111 0.00 0.00 0.00 4.75
533 580 2.887568 CGATGCTCGACACCTGGC 60.888 66.667 0.00 0.00 43.74 4.85
534 581 2.202797 CCGATGCTCGACACCTGG 60.203 66.667 7.07 0.00 43.74 4.45
535 582 0.389817 TTTCCGATGCTCGACACCTG 60.390 55.000 7.07 0.00 43.74 4.00
536 583 0.320374 TTTTCCGATGCTCGACACCT 59.680 50.000 7.07 0.00 43.74 4.00
537 584 0.721718 CTTTTCCGATGCTCGACACC 59.278 55.000 7.07 0.00 43.74 4.16
538 585 1.126846 CACTTTTCCGATGCTCGACAC 59.873 52.381 7.07 0.00 43.74 3.67
539 586 1.428448 CACTTTTCCGATGCTCGACA 58.572 50.000 7.07 0.00 43.74 4.35
540 587 0.095417 GCACTTTTCCGATGCTCGAC 59.905 55.000 7.07 0.00 43.74 4.20
541 588 0.320334 TGCACTTTTCCGATGCTCGA 60.320 50.000 7.07 0.00 43.74 4.04
542 589 0.729116 ATGCACTTTTCCGATGCTCG 59.271 50.000 0.00 0.00 40.13 5.03
543 590 1.267732 CGATGCACTTTTCCGATGCTC 60.268 52.381 0.00 0.00 40.13 4.26
544 591 0.729116 CGATGCACTTTTCCGATGCT 59.271 50.000 0.00 0.00 40.13 3.79
545 592 0.248215 CCGATGCACTTTTCCGATGC 60.248 55.000 0.00 0.00 39.88 3.91
546 593 0.248215 GCCGATGCACTTTTCCGATG 60.248 55.000 0.00 0.00 37.47 3.84
547 594 1.705337 CGCCGATGCACTTTTCCGAT 61.705 55.000 0.00 0.00 37.32 4.18
548 595 2.387445 CGCCGATGCACTTTTCCGA 61.387 57.895 0.00 0.00 37.32 4.55
549 596 2.098298 CGCCGATGCACTTTTCCG 59.902 61.111 0.00 0.00 37.32 4.30
550 597 0.454452 GAACGCCGATGCACTTTTCC 60.454 55.000 0.00 0.00 37.32 3.13
551 598 0.789383 CGAACGCCGATGCACTTTTC 60.789 55.000 0.00 0.00 41.76 2.29
552 599 1.206578 CGAACGCCGATGCACTTTT 59.793 52.632 0.00 0.00 41.76 2.27
553 600 2.677003 CCGAACGCCGATGCACTTT 61.677 57.895 0.00 0.00 41.76 2.66
554 601 3.118454 CCGAACGCCGATGCACTT 61.118 61.111 0.00 0.00 41.76 3.16
563 610 3.376914 GATTCAACGCCCGAACGCC 62.377 63.158 0.00 0.00 36.19 5.68
564 611 2.097728 GATTCAACGCCCGAACGC 59.902 61.111 0.00 0.00 36.19 4.84
565 612 0.452122 GTTGATTCAACGCCCGAACG 60.452 55.000 13.42 0.00 34.63 3.95
566 613 3.378013 GTTGATTCAACGCCCGAAC 57.622 52.632 13.42 0.00 34.63 3.95
574 621 1.399727 CGCCTTCACCGTTGATTCAAC 60.400 52.381 17.76 17.76 40.54 3.18
575 622 0.871722 CGCCTTCACCGTTGATTCAA 59.128 50.000 0.00 0.00 0.00 2.69
576 623 0.034198 TCGCCTTCACCGTTGATTCA 59.966 50.000 0.00 0.00 0.00 2.57
603 650 2.761767 TCAGGATATTTTGTCGACCCGA 59.238 45.455 14.12 4.48 0.00 5.14
604 651 3.173668 TCAGGATATTTTGTCGACCCG 57.826 47.619 14.12 2.26 0.00 5.28
623 671 0.099436 GCCATGGTTGCTGTCGATTC 59.901 55.000 14.67 0.00 0.00 2.52
731 779 0.250513 GATGTGTCAGTGGTCCCTCC 59.749 60.000 0.00 0.00 0.00 4.30
992 1044 0.747255 CCCGACCTCCATAGTGACAG 59.253 60.000 0.00 0.00 0.00 3.51
1447 1512 2.893489 ACTCGGTCGGGGGTTAATATAC 59.107 50.000 0.00 0.00 0.00 1.47
1449 1514 2.092598 ACTCGGTCGGGGGTTAATAT 57.907 50.000 0.00 0.00 0.00 1.28
1454 1519 1.041447 CATCTACTCGGTCGGGGGTT 61.041 60.000 0.00 0.00 0.00 4.11
1455 1520 1.455217 CATCTACTCGGTCGGGGGT 60.455 63.158 0.00 0.00 0.00 4.95
1456 1521 2.857744 GCATCTACTCGGTCGGGGG 61.858 68.421 0.00 0.00 0.00 5.40
1457 1522 0.536687 TAGCATCTACTCGGTCGGGG 60.537 60.000 0.00 0.00 0.00 5.73
1458 1523 0.592148 GTAGCATCTACTCGGTCGGG 59.408 60.000 0.00 0.00 0.00 5.14
1460 1525 1.215244 TCGTAGCATCTACTCGGTCG 58.785 55.000 2.96 0.00 0.00 4.79
1461 1526 2.548904 ACATCGTAGCATCTACTCGGTC 59.451 50.000 2.96 0.00 0.00 4.79
1462 1527 2.573369 ACATCGTAGCATCTACTCGGT 58.427 47.619 2.96 0.00 0.00 4.69
1483 1558 3.916761 ACCGAACATAGTTCAAGCGTTA 58.083 40.909 10.15 0.00 0.00 3.18
1503 1578 6.341316 TGTTTCTCCAGCAATATCTACAGAC 58.659 40.000 0.00 0.00 0.00 3.51
1504 1579 6.544928 TGTTTCTCCAGCAATATCTACAGA 57.455 37.500 0.00 0.00 0.00 3.41
1506 1581 7.415541 GCAATTGTTTCTCCAGCAATATCTACA 60.416 37.037 7.40 0.00 33.13 2.74
1507 1582 6.914757 GCAATTGTTTCTCCAGCAATATCTAC 59.085 38.462 7.40 0.00 33.13 2.59
1596 1960 1.789523 TACAGTCTATCCAGTGCCCC 58.210 55.000 0.00 0.00 0.00 5.80
1633 1997 5.933187 TTGCACACACATTTACTATTCGT 57.067 34.783 0.00 0.00 0.00 3.85
1639 2003 8.572185 TGTACATAATTTGCACACACATTTACT 58.428 29.630 0.00 0.00 29.26 2.24
1640 2004 8.735303 TGTACATAATTTGCACACACATTTAC 57.265 30.769 0.00 0.00 29.26 2.01
1734 2103 5.063312 GCAAATTGTTACCATTGTGCATACC 59.937 40.000 0.00 0.00 35.93 2.73
1735 2104 5.636965 TGCAAATTGTTACCATTGTGCATAC 59.363 36.000 11.64 0.00 39.22 2.39
1736 2105 5.787380 TGCAAATTGTTACCATTGTGCATA 58.213 33.333 11.64 0.00 39.22 3.14
1739 2108 4.057432 ACTGCAAATTGTTACCATTGTGC 58.943 39.130 0.00 8.31 36.27 4.57
1740 2109 6.036953 ACAAACTGCAAATTGTTACCATTGTG 59.963 34.615 10.19 0.00 36.39 3.33
1741 2110 6.112058 ACAAACTGCAAATTGTTACCATTGT 58.888 32.000 10.19 0.00 36.39 2.71
1755 2491 9.255304 GGAAACATAAGAAATAACAAACTGCAA 57.745 29.630 0.00 0.00 0.00 4.08
1794 2735 1.466856 CCCACCATCACCATTCTGTG 58.533 55.000 0.00 0.00 37.59 3.66
1925 2866 0.179089 CTGGGAGCAGACAAGGATCG 60.179 60.000 0.00 0.00 0.00 3.69
2078 3023 9.726034 CAATTTTGTTATGATAAAGCAAACGTC 57.274 29.630 0.00 0.00 0.00 4.34
2091 3036 8.463930 AGTTTCAGACTCCAATTTTGTTATGA 57.536 30.769 0.00 0.00 31.20 2.15
2120 3065 1.941668 GCCTAGATATCCGCTTGCCAC 60.942 57.143 0.00 0.00 0.00 5.01
2259 3204 4.154918 GCACCACAAGAAATCGAGAAAGAT 59.845 41.667 0.00 0.00 0.00 2.40
2417 3669 7.177392 GCATCCTGGCCAGTAAATAGAATAATT 59.823 37.037 30.63 2.09 0.00 1.40
2449 3701 5.424121 AGATAAAAGTGTATTCCATGCGC 57.576 39.130 0.00 0.00 0.00 6.09
2464 3716 6.042208 ACCGGTTCCCAAAATTCAAGATAAAA 59.958 34.615 0.00 0.00 0.00 1.52
2643 3897 1.355381 TGACCATGCCCAGAACTGAAT 59.645 47.619 3.19 0.00 0.00 2.57
2668 3922 4.080863 ACTTCCAGACCCACTATCATCAAC 60.081 45.833 0.00 0.00 0.00 3.18
2806 4060 2.359107 ATGCTGTGGTGCCTCGTG 60.359 61.111 0.00 0.00 0.00 4.35
2877 4144 9.021807 CCGTTTTCAGAGGGACTAATATAGATA 57.978 37.037 0.00 0.00 41.55 1.98
2981 4841 3.793797 AAAAACTGACTTTCCAACGGG 57.206 42.857 0.00 0.00 0.00 5.28
3077 4956 2.685897 TCAACAGGGCACAAGTTAACAC 59.314 45.455 8.61 0.00 0.00 3.32
3533 5430 6.884280 AAATATAAGTAGAGCCAACATGCC 57.116 37.500 0.00 0.00 0.00 4.40
3610 5585 7.038154 ACAAAAGAAAGTTTGCAGTGCTATA 57.962 32.000 17.60 0.00 41.33 1.31
4041 6032 7.969508 GTCATGGTTTAGAGTAGAGTAGACAAC 59.030 40.741 0.00 0.00 0.00 3.32
4099 6090 7.744715 GTGTTCAAGGAAATAGTACAACGAATG 59.255 37.037 0.00 0.00 0.00 2.67
4134 6126 6.350612 GGCACTCAATGAGTAGTCTTAACTCT 60.351 42.308 16.28 0.00 41.37 3.24
4138 6130 4.530553 TGGGCACTCAATGAGTAGTCTTAA 59.469 41.667 16.28 1.04 41.37 1.85
4140 6132 2.906389 TGGGCACTCAATGAGTAGTCTT 59.094 45.455 16.28 0.00 41.37 3.01
4141 6133 2.234908 GTGGGCACTCAATGAGTAGTCT 59.765 50.000 16.28 0.00 41.37 3.24
4143 6135 1.977854 TGTGGGCACTCAATGAGTAGT 59.022 47.619 16.28 0.00 41.37 2.73
4200 6192 3.226884 GCCTTACAAAGACGGCTCA 57.773 52.632 0.00 0.00 39.42 4.26
4239 6525 2.109799 CAGCATAGGTGAGGCCGG 59.890 66.667 0.00 0.00 43.70 6.13
4435 6805 2.486410 TTACCCCTCCCACCTCCCTG 62.486 65.000 0.00 0.00 0.00 4.45
4464 6834 3.278574 GGCAGTGGCTACAATAATCACA 58.721 45.455 9.90 0.00 40.87 3.58
4570 6946 5.630121 TGTGGAATTGTGAGTTCTATTGGT 58.370 37.500 0.00 0.00 0.00 3.67
4577 6953 4.137543 ACTTCCTGTGGAATTGTGAGTTC 58.862 43.478 0.00 0.00 41.23 3.01
4594 6970 9.221775 CAGCACGTATTCAAATTTAATACTTCC 57.778 33.333 18.19 8.18 37.56 3.46
4597 6973 7.067008 AGCCAGCACGTATTCAAATTTAATACT 59.933 33.333 18.19 9.82 37.56 2.12
4729 7125 5.882557 GGTTCAATCCTCAAATCTAGCTGAA 59.117 40.000 0.00 0.00 0.00 3.02
5270 10863 2.439507 ACAGGAGAAAGCTTCACCAGAA 59.560 45.455 0.00 0.00 42.12 3.02
5308 10901 8.621286 CCCAGGAGACAAATATTTAATGTACAC 58.379 37.037 0.00 0.00 0.00 2.90
5545 11138 2.032924 GCATTTGTGACGGGGTATTAGC 59.967 50.000 0.00 0.00 0.00 3.09
5669 11262 2.510411 CACACCACCACTGCCTCA 59.490 61.111 0.00 0.00 0.00 3.86
5670 11263 2.980233 GCACACCACCACTGCCTC 60.980 66.667 0.00 0.00 0.00 4.70
5700 11306 1.003233 GAAGGTGGACGGAGGAAACAT 59.997 52.381 0.00 0.00 0.00 2.71
5717 11323 3.871485 CCAGGAAAGATGGAGACTGAAG 58.129 50.000 0.00 0.00 40.51 3.02
5787 11393 3.735591 TGAAACTACAGGCCACAACTAC 58.264 45.455 5.01 0.00 0.00 2.73
5893 11499 3.452627 ACTCTCCGAAAAGGACTGCATAT 59.547 43.478 0.00 0.00 45.98 1.78
5986 11602 2.766263 TCATCCAGGTGTACCATCAGAC 59.234 50.000 3.56 0.00 38.89 3.51
6067 11683 7.027760 CCATTTTGTCAAGATTCAGTGATCTG 58.972 38.462 0.00 0.00 42.54 2.90
6102 11718 1.973812 GGCAGCCTTCCAGTGTTCC 60.974 63.158 3.29 0.00 0.00 3.62
6159 11775 1.103398 CCCTTTCATCCATGGCGACC 61.103 60.000 6.96 0.00 0.00 4.79
6268 11884 4.211125 TCCAAATGAGAGCGAGATAGAGT 58.789 43.478 0.00 0.00 0.00 3.24
6271 11887 5.389859 AGATCCAAATGAGAGCGAGATAG 57.610 43.478 0.00 0.00 0.00 2.08
6273 11889 5.076182 TCTAGATCCAAATGAGAGCGAGAT 58.924 41.667 0.00 0.00 28.39 2.75
6315 11932 1.078497 CGTGCCCATAGCCACTCAA 60.078 57.895 0.00 0.00 42.71 3.02
6346 11963 4.386049 CACGAAATAGACACTCCAGTTCAC 59.614 45.833 0.00 0.00 0.00 3.18
6362 11979 4.732784 CGAAATGATTTCCCACACGAAAT 58.267 39.130 11.94 0.00 43.51 2.17
6407 12024 4.754618 CCAAATATAGCAGCACGTCCATAA 59.245 41.667 0.00 0.00 0.00 1.90
6471 12088 1.415659 CTCCCCAGAGTGATCCATGTC 59.584 57.143 0.00 0.00 35.21 3.06
6472 12089 1.008815 TCTCCCCAGAGTGATCCATGT 59.991 52.381 0.00 0.00 41.26 3.21
6473 12090 1.693062 CTCTCCCCAGAGTGATCCATG 59.307 57.143 0.00 0.00 41.40 3.66
6474 12091 1.414245 CCTCTCCCCAGAGTGATCCAT 60.414 57.143 0.00 0.00 44.49 3.41
6475 12092 0.031716 CCTCTCCCCAGAGTGATCCA 60.032 60.000 0.00 0.00 44.49 3.41
6476 12093 0.263172 TCCTCTCCCCAGAGTGATCC 59.737 60.000 0.00 0.00 44.49 3.36
6477 12094 1.969923 CATCCTCTCCCCAGAGTGATC 59.030 57.143 0.00 0.00 44.49 2.92
6478 12095 1.293458 ACATCCTCTCCCCAGAGTGAT 59.707 52.381 0.00 0.00 44.49 3.06
6479 12096 0.712979 ACATCCTCTCCCCAGAGTGA 59.287 55.000 0.00 0.00 44.49 3.41
6480 12097 1.118838 GACATCCTCTCCCCAGAGTG 58.881 60.000 0.00 0.00 44.49 3.51
6481 12098 0.031616 GGACATCCTCTCCCCAGAGT 60.032 60.000 0.00 0.00 44.49 3.24
6482 12099 1.112315 CGGACATCCTCTCCCCAGAG 61.112 65.000 0.00 0.00 45.44 3.35
6483 12100 1.075970 CGGACATCCTCTCCCCAGA 60.076 63.158 0.00 0.00 0.00 3.86
6484 12101 2.801631 GCGGACATCCTCTCCCCAG 61.802 68.421 0.00 0.00 0.00 4.45
6485 12102 2.764128 GCGGACATCCTCTCCCCA 60.764 66.667 0.00 0.00 0.00 4.96
6486 12103 2.764128 TGCGGACATCCTCTCCCC 60.764 66.667 0.00 0.00 0.00 4.81
6487 12104 2.501610 GTGCGGACATCCTCTCCC 59.498 66.667 0.63 0.00 0.00 4.30
6488 12105 2.501610 GGTGCGGACATCCTCTCC 59.498 66.667 9.96 0.00 0.00 3.71
6489 12106 2.501610 GGGTGCGGACATCCTCTC 59.498 66.667 9.96 0.00 44.47 3.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.