Multiple sequence alignment - TraesCS5A01G143800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G143800 chr5A 100.000 6761 0 0 1 6761 319225823 319232583 0.000000e+00 12486.0
1 TraesCS5A01G143800 chr5A 93.478 92 5 1 2244 2335 349401473 349401383 1.180000e-27 135.0
2 TraesCS5A01G143800 chr5D 95.557 4456 156 26 2336 6761 234849744 234845301 0.000000e+00 7094.0
3 TraesCS5A01G143800 chr5D 89.591 1979 118 34 312 2257 234851668 234849745 0.000000e+00 2433.0
4 TraesCS5A01G143800 chr5D 85.283 265 14 12 61 313 234852102 234851851 4.050000e-62 250.0
5 TraesCS5A01G143800 chr5D 98.824 85 1 0 2253 2337 206601350 206601266 1.170000e-32 152.0
6 TraesCS5A01G143800 chr5B 94.704 2700 101 15 4065 6761 269977008 269979668 0.000000e+00 4156.0
7 TraesCS5A01G143800 chr5B 94.937 1264 40 9 2819 4073 269975738 269976986 0.000000e+00 1958.0
8 TraesCS5A01G143800 chr5B 89.122 1048 62 27 994 2029 269973424 269974431 0.000000e+00 1256.0
9 TraesCS5A01G143800 chr5B 86.683 413 36 11 2336 2733 269974750 269975158 2.240000e-119 440.0
10 TraesCS5A01G143800 chr5B 95.331 257 11 1 58 313 269963405 269963661 2.270000e-109 407.0
11 TraesCS5A01G143800 chr5B 90.476 315 17 7 521 831 269973083 269973388 2.940000e-108 403.0
12 TraesCS5A01G143800 chr5B 96.957 230 7 0 2028 2257 269974520 269974749 2.960000e-103 387.0
13 TraesCS5A01G143800 chr5B 97.778 90 2 0 2734 2823 269975242 269975331 9.080000e-34 156.0
14 TraesCS5A01G143800 chr5B 95.402 87 4 0 2253 2339 710758565 710758651 9.140000e-29 139.0
15 TraesCS5A01G143800 chr5B 95.349 86 3 1 2251 2335 689103388 689103473 1.180000e-27 135.0
16 TraesCS5A01G143800 chr5B 85.714 126 12 4 312 432 269964212 269964336 1.980000e-25 128.0
17 TraesCS5A01G143800 chr5B 96.154 52 2 0 4 55 269963311 269963362 1.210000e-12 86.1
18 TraesCS5A01G143800 chr4D 88.344 163 19 0 6444 6606 75266747 75266909 5.350000e-46 196.0
19 TraesCS5A01G143800 chr2A 88.095 168 17 3 6443 6609 79315266 79315101 5.350000e-46 196.0
20 TraesCS5A01G143800 chr3D 87.730 163 18 2 6445 6606 384865886 384865725 8.950000e-44 189.0
21 TraesCS5A01G143800 chr3D 96.512 86 1 2 2253 2337 261572043 261571959 2.540000e-29 141.0
22 TraesCS5A01G143800 chr4A 86.207 174 21 1 6444 6614 614112478 614112305 1.160000e-42 185.0
23 TraesCS5A01G143800 chr4A 93.204 103 7 0 3818 3920 492942341 492942239 1.170000e-32 152.0
24 TraesCS5A01G143800 chr2D 86.747 166 22 0 6442 6607 498472994 498473159 1.160000e-42 185.0
25 TraesCS5A01G143800 chr2D 86.471 170 20 3 6442 6611 153795164 153794998 4.160000e-42 183.0
26 TraesCS5A01G143800 chr2D 86.471 170 20 3 6442 6611 153800820 153800654 4.160000e-42 183.0
27 TraesCS5A01G143800 chr7D 93.396 106 7 0 3819 3924 190163117 190163222 2.520000e-34 158.0
28 TraesCS5A01G143800 chr7B 93.396 106 7 0 3820 3925 237489311 237489416 2.520000e-34 158.0
29 TraesCS5A01G143800 chr7B 94.253 87 4 1 2249 2335 99367495 99367410 1.530000e-26 132.0
30 TraesCS5A01G143800 chr3B 93.333 105 7 0 3813 3917 256253815 256253711 9.080000e-34 156.0
31 TraesCS5A01G143800 chr1B 93.269 104 7 0 3821 3924 359902144 359902041 3.270000e-33 154.0
32 TraesCS5A01G143800 chrUn 92.523 107 6 2 3820 3925 362465900 362465795 1.170000e-32 152.0
33 TraesCS5A01G143800 chr1D 91.589 107 8 1 3806 3912 135931061 135930956 5.460000e-31 147.0
34 TraesCS5A01G143800 chr1D 96.552 87 2 1 2249 2335 291791952 291792037 7.070000e-30 143.0
35 TraesCS5A01G143800 chr6D 95.402 87 3 1 2250 2335 271737198 271737284 3.290000e-28 137.0
36 TraesCS5A01G143800 chr2B 95.402 87 3 1 2250 2335 511275879 511275965 3.290000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G143800 chr5A 319225823 319232583 6760 False 12486.000000 12486 100.000000 1 6761 1 chr5A.!!$F1 6760
1 TraesCS5A01G143800 chr5D 234845301 234852102 6801 True 3259.000000 7094 90.143667 61 6761 3 chr5D.!!$R2 6700
2 TraesCS5A01G143800 chr5B 269973083 269979668 6585 False 1250.857143 4156 92.951000 521 6761 7 chr5B.!!$F4 6240
3 TraesCS5A01G143800 chr5B 269963311 269964336 1025 False 207.033333 407 92.399667 4 432 3 chr5B.!!$F3 428

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
802 1430 0.040958 CAAGTCTTGCGTTGTCTGGC 60.041 55.000 0.00 0.0 0.00 4.85 F
1167 1806 0.466543 ACAGCACCGGTCAGTAAACA 59.533 50.000 2.59 0.0 0.00 2.83 F
2168 2917 0.034767 TCCAGGAATCTTGCTGCCAG 60.035 55.000 5.97 0.0 44.18 4.85 F
2377 3127 1.117150 TGGATTAGTACACGGGCTCC 58.883 55.000 0.00 0.0 0.00 4.70 F
2378 3128 1.117150 GGATTAGTACACGGGCTCCA 58.883 55.000 0.00 0.0 0.00 3.86 F
3960 5229 0.994247 TAGTCAGACTGGTACCCCGA 59.006 55.000 13.84 0.0 0.00 5.14 F
4019 5288 3.137176 CCATGTGGAATCTGTATGGAGGT 59.863 47.826 0.00 0.0 40.52 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1748 2406 0.108329 CGGACCAGAATAGCAACCGT 60.108 55.000 0.00 0.00 35.21 4.83 R
2324 3073 0.180171 CATGCATTACCTCCGTCCCA 59.820 55.000 0.00 0.00 0.00 4.37 R
3386 4653 0.250467 GCTCAACAGACCAGAGGCAA 60.250 55.000 0.00 0.00 0.00 4.52 R
3666 4934 3.074412 CTCTTTGTGGTTGTATCGCCTT 58.926 45.455 0.00 0.00 0.00 4.35 R
4173 5473 4.574674 ACTCCATTGCTTGATACAAGGA 57.425 40.909 12.36 7.49 30.65 3.36 R
5638 6941 1.734465 GACACCATTGTAGTGCAGAGC 59.266 52.381 0.00 0.00 38.87 4.09 R
5869 7172 7.688343 TGATACATCATAAATACTGCATCCCA 58.312 34.615 0.00 0.00 0.00 4.37 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 0.249489 GCCACACGACACACTCTCTT 60.249 55.000 0.00 0.00 0.00 2.85
55 56 2.126228 TTCACGCCTCGCTAACCG 60.126 61.111 0.00 0.00 38.61 4.44
56 57 2.814183 CTTCACGCCTCGCTAACCGT 62.814 60.000 0.00 0.00 38.35 4.83
82 123 5.478679 GGTTAGCTTAGCTAGAGATGGATGA 59.521 44.000 13.93 0.00 42.34 2.92
89 130 4.983053 AGCTAGAGATGGATGAAAATGGG 58.017 43.478 0.00 0.00 0.00 4.00
91 132 4.759183 GCTAGAGATGGATGAAAATGGGAC 59.241 45.833 0.00 0.00 0.00 4.46
133 177 2.033602 AGGGGGAGCGAAAAACGG 59.966 61.111 0.00 0.00 42.83 4.44
292 344 2.435586 CTGCCTCCAGCTGAACCG 60.436 66.667 17.39 0.00 42.76 4.44
313 366 4.569180 AGCACGCACCAGCCAACT 62.569 61.111 0.00 0.00 37.52 3.16
314 367 4.332637 GCACGCACCAGCCAACTG 62.333 66.667 0.00 0.00 44.05 3.16
339 955 5.335127 CGACCACAATGATGATTTTCTTCC 58.665 41.667 0.00 0.00 0.00 3.46
345 961 8.616076 CCACAATGATGATTTTCTTCCTACTAC 58.384 37.037 0.00 0.00 0.00 2.73
346 962 8.616076 CACAATGATGATTTTCTTCCTACTACC 58.384 37.037 0.00 0.00 0.00 3.18
349 965 4.811969 TGATTTTCTTCCTACTACCGCA 57.188 40.909 0.00 0.00 0.00 5.69
356 972 4.817517 TCTTCCTACTACCGCAAAAGAAG 58.182 43.478 0.00 0.00 0.00 2.85
365 984 7.739498 ACTACCGCAAAAGAAGAAGATAAAA 57.261 32.000 0.00 0.00 0.00 1.52
437 1060 9.377312 ACAAAAATGTTGCTACTACAAAAATGT 57.623 25.926 0.00 0.00 0.00 2.71
438 1061 9.848172 CAAAAATGTTGCTACTACAAAAATGTC 57.152 29.630 0.00 0.00 0.00 3.06
439 1062 7.851822 AAATGTTGCTACTACAAAAATGTCG 57.148 32.000 0.00 0.00 0.00 4.35
440 1063 5.351233 TGTTGCTACTACAAAAATGTCGG 57.649 39.130 0.00 0.00 0.00 4.79
441 1064 4.817464 TGTTGCTACTACAAAAATGTCGGT 59.183 37.500 0.00 0.00 0.00 4.69
442 1065 5.049954 TGTTGCTACTACAAAAATGTCGGTC 60.050 40.000 0.00 0.00 0.00 4.79
443 1066 4.633175 TGCTACTACAAAAATGTCGGTCA 58.367 39.130 0.00 0.00 0.00 4.02
444 1067 5.242434 TGCTACTACAAAAATGTCGGTCAT 58.758 37.500 0.00 0.00 38.57 3.06
445 1068 5.121611 TGCTACTACAAAAATGTCGGTCATG 59.878 40.000 0.00 0.00 36.81 3.07
446 1069 5.121768 GCTACTACAAAAATGTCGGTCATGT 59.878 40.000 0.00 0.00 36.81 3.21
447 1070 6.311935 GCTACTACAAAAATGTCGGTCATGTA 59.688 38.462 0.00 0.00 36.81 2.29
448 1071 7.148540 GCTACTACAAAAATGTCGGTCATGTAA 60.149 37.037 0.00 0.00 36.81 2.41
449 1072 6.894828 ACTACAAAAATGTCGGTCATGTAAC 58.105 36.000 0.00 0.00 36.81 2.50
450 1073 6.708949 ACTACAAAAATGTCGGTCATGTAACT 59.291 34.615 0.00 0.00 36.81 2.24
451 1074 7.874016 ACTACAAAAATGTCGGTCATGTAACTA 59.126 33.333 0.00 0.00 36.81 2.24
452 1075 7.499321 ACAAAAATGTCGGTCATGTAACTAA 57.501 32.000 0.00 0.00 36.81 2.24
453 1076 7.932335 ACAAAAATGTCGGTCATGTAACTAAA 58.068 30.769 0.00 0.00 36.81 1.85
454 1077 8.073768 ACAAAAATGTCGGTCATGTAACTAAAG 58.926 33.333 0.00 0.00 36.81 1.85
455 1078 5.796350 AATGTCGGTCATGTAACTAAAGC 57.204 39.130 0.00 0.00 36.81 3.51
456 1079 3.592059 TGTCGGTCATGTAACTAAAGCC 58.408 45.455 0.00 0.00 0.00 4.35
457 1080 2.934553 GTCGGTCATGTAACTAAAGCCC 59.065 50.000 0.00 0.00 0.00 5.19
458 1081 2.835764 TCGGTCATGTAACTAAAGCCCT 59.164 45.455 0.00 0.00 0.00 5.19
459 1082 4.025360 TCGGTCATGTAACTAAAGCCCTA 58.975 43.478 0.00 0.00 0.00 3.53
460 1083 4.098960 TCGGTCATGTAACTAAAGCCCTAG 59.901 45.833 0.00 0.00 0.00 3.02
461 1084 4.127907 GGTCATGTAACTAAAGCCCTAGC 58.872 47.826 0.00 0.00 40.32 3.42
505 1128 2.310233 CCGGTGAAGTGTGTCTGCG 61.310 63.158 0.00 0.00 0.00 5.18
507 1130 1.595382 GGTGAAGTGTGTCTGCGCT 60.595 57.895 9.73 0.00 32.98 5.92
508 1131 1.160329 GGTGAAGTGTGTCTGCGCTT 61.160 55.000 9.73 0.00 41.31 4.68
547 1170 1.819288 TGGTGCCGTCAAAAGAAACAA 59.181 42.857 0.00 0.00 0.00 2.83
799 1427 2.101582 AGTCTCAAGTCTTGCGTTGTCT 59.898 45.455 7.78 0.00 0.00 3.41
800 1428 2.219674 GTCTCAAGTCTTGCGTTGTCTG 59.780 50.000 7.78 0.00 0.00 3.51
801 1429 1.528586 CTCAAGTCTTGCGTTGTCTGG 59.471 52.381 7.78 0.00 0.00 3.86
802 1430 0.040958 CAAGTCTTGCGTTGTCTGGC 60.041 55.000 0.00 0.00 0.00 4.85
812 1440 3.583276 TTGTCTGGCCACTACCGCG 62.583 63.158 0.00 0.00 0.00 6.46
926 1554 2.629051 GCTTAATGCGGGACTAAGTGT 58.371 47.619 0.00 0.00 0.00 3.55
927 1555 3.788937 GCTTAATGCGGGACTAAGTGTA 58.211 45.455 0.00 0.00 0.00 2.90
1008 1647 4.570874 GGCCGAGGGATGAAGGGC 62.571 72.222 0.00 0.00 43.01 5.19
1009 1648 4.570874 GCCGAGGGATGAAGGGCC 62.571 72.222 0.00 0.00 37.82 5.80
1010 1649 3.089874 CCGAGGGATGAAGGGCCA 61.090 66.667 6.18 0.00 0.00 5.36
1163 1802 1.532078 TCCACAGCACCGGTCAGTA 60.532 57.895 2.59 0.00 0.00 2.74
1167 1806 0.466543 ACAGCACCGGTCAGTAAACA 59.533 50.000 2.59 0.00 0.00 2.83
1181 1821 5.010820 GTCAGTAAACAACCTCTACCTGTCT 59.989 44.000 0.00 0.00 0.00 3.41
1182 1822 5.243283 TCAGTAAACAACCTCTACCTGTCTC 59.757 44.000 0.00 0.00 0.00 3.36
1183 1823 5.244178 CAGTAAACAACCTCTACCTGTCTCT 59.756 44.000 0.00 0.00 0.00 3.10
1186 1826 3.158676 ACAACCTCTACCTGTCTCTGTC 58.841 50.000 0.00 0.00 0.00 3.51
1227 1869 2.107750 CCGCGGATCTGTGCTGAT 59.892 61.111 24.07 0.00 0.00 2.90
1228 1870 1.522355 CCGCGGATCTGTGCTGATT 60.522 57.895 24.07 0.00 0.00 2.57
1229 1871 1.493950 CCGCGGATCTGTGCTGATTC 61.494 60.000 24.07 0.00 0.00 2.52
1230 1872 0.529337 CGCGGATCTGTGCTGATTCT 60.529 55.000 1.33 0.00 0.00 2.40
1231 1873 0.935898 GCGGATCTGTGCTGATTCTG 59.064 55.000 2.89 0.00 0.00 3.02
1239 1881 1.875514 TGTGCTGATTCTGTTCTGTGC 59.124 47.619 0.00 0.00 0.00 4.57
1246 1888 4.707840 CTGTTCTGTGCGCGCGTG 62.708 66.667 32.35 16.86 0.00 5.34
1364 2013 1.207593 CTTTCGCTGCCGGAGTTTG 59.792 57.895 5.05 0.00 34.56 2.93
1385 2034 2.724174 GCGAATTTTCTGACGGGTTTTG 59.276 45.455 0.00 0.00 0.00 2.44
1388 2038 3.643159 ATTTTCTGACGGGTTTTGCTC 57.357 42.857 0.00 0.00 0.00 4.26
1392 2042 0.886490 CTGACGGGTTTTGCTCTGCT 60.886 55.000 0.00 0.00 0.00 4.24
1420 2070 1.203001 TGTTGCCTTTAGGAACTGGGG 60.203 52.381 0.00 0.00 41.52 4.96
1455 2108 1.617322 CATCTTGATGGGGCCATGAG 58.383 55.000 4.39 0.00 36.70 2.90
1474 2127 1.285023 GCACAAGCTGCTCAAGGTG 59.715 57.895 1.00 10.56 43.33 4.00
1495 2153 2.028883 GCACTGTCCTAAATTACGCGTC 59.971 50.000 18.63 0.00 0.00 5.19
1581 2239 4.536090 TCTGAGTACCATTCCCAATTCTGT 59.464 41.667 0.00 0.00 0.00 3.41
1607 2265 4.041567 TGATTCTTCCTGCTGGTTTCTACA 59.958 41.667 9.73 2.94 34.23 2.74
1608 2266 4.431416 TTCTTCCTGCTGGTTTCTACAA 57.569 40.909 9.73 0.00 34.23 2.41
1609 2267 4.431416 TCTTCCTGCTGGTTTCTACAAA 57.569 40.909 9.73 0.00 34.23 2.83
1610 2268 4.787551 TCTTCCTGCTGGTTTCTACAAAA 58.212 39.130 9.73 0.00 34.23 2.44
1698 2356 1.083847 GCGTGTTTTCGTGGACGTC 60.084 57.895 7.13 7.13 40.80 4.34
1748 2406 1.682684 GCTTCGTGAGGAGAGGGGA 60.683 63.158 0.00 0.00 39.93 4.81
1763 2421 0.463833 GGGGACGGTTGCTATTCTGG 60.464 60.000 0.00 0.00 0.00 3.86
1764 2422 0.252197 GGGACGGTTGCTATTCTGGT 59.748 55.000 0.00 0.00 0.00 4.00
1765 2423 1.653151 GGACGGTTGCTATTCTGGTC 58.347 55.000 0.00 0.00 0.00 4.02
1766 2424 1.653151 GACGGTTGCTATTCTGGTCC 58.347 55.000 0.00 0.00 0.00 4.46
1767 2425 0.108329 ACGGTTGCTATTCTGGTCCG 60.108 55.000 0.00 0.00 41.77 4.79
1778 2436 2.603473 TGGTCCGGTCTGGTCTGG 60.603 66.667 0.00 0.00 39.52 3.86
1825 2483 7.386299 GTCTCTGATGATGTTATGGGATTACAC 59.614 40.741 0.00 0.00 0.00 2.90
1829 2487 5.346181 TGATGTTATGGGATTACACGACA 57.654 39.130 0.00 0.00 0.00 4.35
1842 2500 2.476051 CGACATGTGGCGTTCAGC 59.524 61.111 1.15 0.00 42.66 4.26
1854 2513 0.657368 CGTTCAGCGGTGCAAACTTC 60.657 55.000 10.38 0.00 36.85 3.01
1855 2514 0.317854 GTTCAGCGGTGCAAACTTCC 60.318 55.000 10.38 0.00 0.00 3.46
1859 2518 2.193536 GCGGTGCAAACTTCCCACT 61.194 57.895 0.00 0.00 0.00 4.00
1861 2520 1.841663 CGGTGCAAACTTCCCACTCG 61.842 60.000 0.00 0.00 0.00 4.18
1878 2537 1.002576 CTCGCAGTGTTGTGCAAATCA 60.003 47.619 0.00 0.00 44.21 2.57
1901 2560 8.347004 TCACAAGTGATGCCAAAATAAATAGA 57.653 30.769 0.00 0.00 34.14 1.98
1902 2561 8.461222 TCACAAGTGATGCCAAAATAAATAGAG 58.539 33.333 0.00 0.00 34.14 2.43
1951 2610 8.263640 ACTAATTCTCACAGCTAGTCAAATGAT 58.736 33.333 0.00 0.00 0.00 2.45
1999 2658 0.463474 TTGGCTTTTGTTGGCTTGGC 60.463 50.000 0.00 0.00 0.00 4.52
2065 2814 7.575414 TGTCTATTTGATGAGTAGTCTCCTC 57.425 40.000 0.00 0.00 39.75 3.71
2125 2874 1.297364 GGGTCGAACGGGATTTCCA 59.703 57.895 0.00 0.00 37.91 3.53
2168 2917 0.034767 TCCAGGAATCTTGCTGCCAG 60.035 55.000 5.97 0.00 44.18 4.85
2175 2924 3.194116 GGAATCTTGCTGCCAGATCAAAA 59.806 43.478 15.60 0.00 0.00 2.44
2257 3006 9.394477 GTAAGAAATGCGGGATCAAATAAATAC 57.606 33.333 0.00 0.00 0.00 1.89
2258 3007 7.823745 AGAAATGCGGGATCAAATAAATACT 57.176 32.000 0.00 0.00 0.00 2.12
2259 3008 7.875971 AGAAATGCGGGATCAAATAAATACTC 58.124 34.615 0.00 0.00 0.00 2.59
2260 3009 6.575162 AATGCGGGATCAAATAAATACTCC 57.425 37.500 0.00 0.00 0.00 3.85
2261 3010 4.394729 TGCGGGATCAAATAAATACTCCC 58.605 43.478 0.00 0.00 39.19 4.30
2262 3011 4.104102 TGCGGGATCAAATAAATACTCCCT 59.896 41.667 4.09 0.00 40.20 4.20
2263 3012 4.695928 GCGGGATCAAATAAATACTCCCTC 59.304 45.833 4.09 0.00 40.20 4.30
2264 3013 5.246307 CGGGATCAAATAAATACTCCCTCC 58.754 45.833 4.09 0.00 40.20 4.30
2265 3014 5.246307 GGGATCAAATAAATACTCCCTCCG 58.754 45.833 0.00 0.00 39.42 4.63
2266 3015 5.221864 GGGATCAAATAAATACTCCCTCCGT 60.222 44.000 0.00 0.00 39.42 4.69
2267 3016 5.932883 GGATCAAATAAATACTCCCTCCGTC 59.067 44.000 0.00 0.00 0.00 4.79
2268 3017 5.286267 TCAAATAAATACTCCCTCCGTCC 57.714 43.478 0.00 0.00 0.00 4.79
2269 3018 4.102054 TCAAATAAATACTCCCTCCGTCCC 59.898 45.833 0.00 0.00 0.00 4.46
2270 3019 2.852714 TAAATACTCCCTCCGTCCCA 57.147 50.000 0.00 0.00 0.00 4.37
2271 3020 1.961133 AAATACTCCCTCCGTCCCAA 58.039 50.000 0.00 0.00 0.00 4.12
2272 3021 1.961133 AATACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
2273 3022 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
2274 3023 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
2275 3024 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2276 3025 2.488836 ACTCCCTCCGTCCCAAAATAT 58.511 47.619 0.00 0.00 0.00 1.28
2277 3026 3.660959 ACTCCCTCCGTCCCAAAATATA 58.339 45.455 0.00 0.00 0.00 0.86
2278 3027 4.042174 ACTCCCTCCGTCCCAAAATATAA 58.958 43.478 0.00 0.00 0.00 0.98
2279 3028 4.102681 ACTCCCTCCGTCCCAAAATATAAG 59.897 45.833 0.00 0.00 0.00 1.73
2280 3029 4.300345 TCCCTCCGTCCCAAAATATAAGA 58.700 43.478 0.00 0.00 0.00 2.10
2281 3030 4.722781 TCCCTCCGTCCCAAAATATAAGAA 59.277 41.667 0.00 0.00 0.00 2.52
2282 3031 4.820173 CCCTCCGTCCCAAAATATAAGAAC 59.180 45.833 0.00 0.00 0.00 3.01
2283 3032 4.510340 CCTCCGTCCCAAAATATAAGAACG 59.490 45.833 0.00 0.00 0.00 3.95
2284 3033 5.088680 TCCGTCCCAAAATATAAGAACGT 57.911 39.130 0.00 0.00 0.00 3.99
2285 3034 5.490159 TCCGTCCCAAAATATAAGAACGTT 58.510 37.500 0.00 0.00 0.00 3.99
2286 3035 5.939296 TCCGTCCCAAAATATAAGAACGTTT 59.061 36.000 0.46 0.00 0.00 3.60
2287 3036 6.430616 TCCGTCCCAAAATATAAGAACGTTTT 59.569 34.615 0.46 0.00 0.00 2.43
2288 3037 7.040548 TCCGTCCCAAAATATAAGAACGTTTTT 60.041 33.333 9.22 9.22 0.00 1.94
2289 3038 7.061326 CCGTCCCAAAATATAAGAACGTTTTTG 59.939 37.037 13.87 12.16 37.14 2.44
2290 3039 7.804129 CGTCCCAAAATATAAGAACGTTTTTGA 59.196 33.333 13.87 2.81 38.79 2.69
2291 3040 8.908678 GTCCCAAAATATAAGAACGTTTTTGAC 58.091 33.333 13.87 5.89 38.79 3.18
2292 3041 8.630917 TCCCAAAATATAAGAACGTTTTTGACA 58.369 29.630 13.87 0.01 38.79 3.58
2293 3042 8.696175 CCCAAAATATAAGAACGTTTTTGACAC 58.304 33.333 13.87 0.00 38.79 3.67
2294 3043 9.458374 CCAAAATATAAGAACGTTTTTGACACT 57.542 29.630 13.87 0.00 38.79 3.55
2298 3047 9.769093 AATATAAGAACGTTTTTGACACTATGC 57.231 29.630 13.87 0.00 0.00 3.14
2299 3048 5.751243 AAGAACGTTTTTGACACTATGCT 57.249 34.783 0.46 0.00 0.00 3.79
2300 3049 6.854496 AAGAACGTTTTTGACACTATGCTA 57.146 33.333 0.46 0.00 0.00 3.49
2301 3050 6.224420 AGAACGTTTTTGACACTATGCTAC 57.776 37.500 0.46 0.00 0.00 3.58
2302 3051 5.989777 AGAACGTTTTTGACACTATGCTACT 59.010 36.000 0.46 0.00 0.00 2.57
2303 3052 5.591643 ACGTTTTTGACACTATGCTACTG 57.408 39.130 0.00 0.00 0.00 2.74
2304 3053 5.054477 ACGTTTTTGACACTATGCTACTGT 58.946 37.500 0.00 0.00 0.00 3.55
2305 3054 5.176958 ACGTTTTTGACACTATGCTACTGTC 59.823 40.000 0.00 0.00 35.79 3.51
2306 3055 5.176774 CGTTTTTGACACTATGCTACTGTCA 59.823 40.000 0.00 0.00 41.97 3.58
2311 3060 6.539649 TGACACTATGCTACTGTCAAAAAC 57.460 37.500 0.00 0.00 41.00 2.43
2312 3061 5.176774 TGACACTATGCTACTGTCAAAAACG 59.823 40.000 0.00 0.00 41.00 3.60
2313 3062 5.054477 ACACTATGCTACTGTCAAAAACGT 58.946 37.500 0.00 0.00 0.00 3.99
2314 3063 5.526111 ACACTATGCTACTGTCAAAAACGTT 59.474 36.000 0.00 0.00 0.00 3.99
2315 3064 6.071463 CACTATGCTACTGTCAAAAACGTTC 58.929 40.000 0.00 0.00 0.00 3.95
2316 3065 5.989777 ACTATGCTACTGTCAAAAACGTTCT 59.010 36.000 0.00 0.00 0.00 3.01
2317 3066 5.751243 ATGCTACTGTCAAAAACGTTCTT 57.249 34.783 0.00 0.00 0.00 2.52
2318 3067 6.854496 ATGCTACTGTCAAAAACGTTCTTA 57.146 33.333 0.00 0.00 0.00 2.10
2319 3068 6.854496 TGCTACTGTCAAAAACGTTCTTAT 57.146 33.333 0.00 0.00 0.00 1.73
2320 3069 7.949903 TGCTACTGTCAAAAACGTTCTTATA 57.050 32.000 0.00 0.00 0.00 0.98
2321 3070 8.542497 TGCTACTGTCAAAAACGTTCTTATAT 57.458 30.769 0.00 0.00 0.00 0.86
2322 3071 8.995220 TGCTACTGTCAAAAACGTTCTTATATT 58.005 29.630 0.00 0.00 0.00 1.28
2323 3072 9.821662 GCTACTGTCAAAAACGTTCTTATATTT 57.178 29.630 0.00 0.00 0.00 1.40
2326 3075 9.458374 ACTGTCAAAAACGTTCTTATATTTTGG 57.542 29.630 15.53 6.22 39.94 3.28
2327 3076 8.804688 TGTCAAAAACGTTCTTATATTTTGGG 57.195 30.769 15.53 0.00 39.94 4.12
2328 3077 8.630917 TGTCAAAAACGTTCTTATATTTTGGGA 58.369 29.630 15.53 4.35 39.94 4.37
2329 3078 8.908678 GTCAAAAACGTTCTTATATTTTGGGAC 58.091 33.333 15.53 7.20 39.94 4.46
2330 3079 7.804129 TCAAAAACGTTCTTATATTTTGGGACG 59.196 33.333 15.53 0.00 39.94 4.79
2331 3080 5.806366 AACGTTCTTATATTTTGGGACGG 57.194 39.130 0.00 0.00 0.00 4.79
2332 3081 5.088680 ACGTTCTTATATTTTGGGACGGA 57.911 39.130 0.00 0.00 0.00 4.69
2333 3082 5.114081 ACGTTCTTATATTTTGGGACGGAG 58.886 41.667 0.00 0.00 0.00 4.63
2334 3083 4.510340 CGTTCTTATATTTTGGGACGGAGG 59.490 45.833 0.00 0.00 0.00 4.30
2373 3123 3.880047 TGACTTGGATTAGTACACGGG 57.120 47.619 0.00 0.00 0.00 5.28
2374 3124 2.093869 TGACTTGGATTAGTACACGGGC 60.094 50.000 0.00 0.00 0.00 6.13
2375 3125 2.167900 GACTTGGATTAGTACACGGGCT 59.832 50.000 0.00 0.00 0.00 5.19
2377 3127 1.117150 TGGATTAGTACACGGGCTCC 58.883 55.000 0.00 0.00 0.00 4.70
2378 3128 1.117150 GGATTAGTACACGGGCTCCA 58.883 55.000 0.00 0.00 0.00 3.86
2379 3129 1.692519 GGATTAGTACACGGGCTCCAT 59.307 52.381 0.00 0.00 0.00 3.41
2394 3144 3.265791 GCTCCATGTCCTTCTTACTGTG 58.734 50.000 0.00 0.00 0.00 3.66
2459 3212 4.213564 AGGACTTGTCATGGAGATCAAC 57.786 45.455 0.00 0.00 0.00 3.18
2471 3224 6.207614 TCATGGAGATCAACGGTAAGAGATAG 59.792 42.308 0.00 0.00 0.00 2.08
2475 3228 7.093465 TGGAGATCAACGGTAAGAGATAGTTTT 60.093 37.037 0.00 0.00 0.00 2.43
2477 3230 9.798994 GAGATCAACGGTAAGAGATAGTTTTTA 57.201 33.333 0.00 0.00 0.00 1.52
2498 3251 8.729805 TTTTATTTTCTCTTGTGTTGGCAAAT 57.270 26.923 0.00 0.00 0.00 2.32
2536 3289 9.168451 TCTGCGTTTCACTTTCCAATAATATTA 57.832 29.630 0.00 0.00 0.00 0.98
2582 3343 5.479306 GGCTGTGACTACTGAATTCTGTTA 58.521 41.667 21.17 8.35 0.00 2.41
2583 3344 5.578727 GGCTGTGACTACTGAATTCTGTTAG 59.421 44.000 21.17 17.15 0.00 2.34
2584 3345 6.159988 GCTGTGACTACTGAATTCTGTTAGT 58.840 40.000 21.17 19.51 0.00 2.24
2611 3373 3.499157 TGGTGTTTGTACGGCTATTGTTC 59.501 43.478 0.00 0.00 0.00 3.18
2612 3374 3.749609 GGTGTTTGTACGGCTATTGTTCT 59.250 43.478 0.00 0.00 0.00 3.01
2613 3375 4.378046 GGTGTTTGTACGGCTATTGTTCTG 60.378 45.833 0.00 0.00 0.00 3.02
2617 3379 2.202566 GTACGGCTATTGTTCTGAGGC 58.797 52.381 0.00 0.00 0.00 4.70
2628 3391 4.112634 TGTTCTGAGGCCTTAACCAATT 57.887 40.909 6.77 0.00 0.00 2.32
2646 3409 5.665459 CCAATTGGGTTTTACAGTCAACAA 58.335 37.500 17.36 0.00 0.00 2.83
2656 3419 7.973944 GGTTTTACAGTCAACAAGATTTTCAGT 59.026 33.333 0.00 0.00 0.00 3.41
2657 3420 9.353999 GTTTTACAGTCAACAAGATTTTCAGTT 57.646 29.630 0.00 0.00 0.00 3.16
2659 3422 8.506168 TTACAGTCAACAAGATTTTCAGTTCT 57.494 30.769 0.00 0.00 0.00 3.01
2663 3426 7.970061 CAGTCAACAAGATTTTCAGTTCTTCAA 59.030 33.333 0.00 0.00 29.85 2.69
2673 3437 9.750125 GATTTTCAGTTCTTCAAAGGTAAATGT 57.250 29.630 0.00 0.00 0.00 2.71
2703 3467 7.751732 TCTATGTGTAAGAACATTGTTGCATC 58.248 34.615 6.80 0.00 41.09 3.91
2715 3479 2.327343 TTGCATCTCAGTGTGGCGC 61.327 57.895 0.00 0.00 0.00 6.53
2719 3483 1.672356 ATCTCAGTGTGGCGCCAAC 60.672 57.895 34.66 28.63 0.00 3.77
2732 3578 4.090786 GTGGCGCCAACAATAATTTTGTAC 59.909 41.667 34.66 8.96 31.50 2.90
2857 4114 3.955771 TTTTGCTACCGTGAGTGTTTC 57.044 42.857 0.00 0.00 0.00 2.78
2858 4115 2.605837 TTGCTACCGTGAGTGTTTCA 57.394 45.000 0.00 0.00 0.00 2.69
2859 4116 2.148916 TGCTACCGTGAGTGTTTCAG 57.851 50.000 0.00 0.00 36.21 3.02
2887 4145 3.929610 TGGCAATAAATAAACGCCTTTGC 59.070 39.130 0.00 0.00 43.38 3.68
3083 4349 9.082313 CCCTGGTTGATTATTATGCTTTAGATT 57.918 33.333 0.00 0.00 0.00 2.40
3152 4418 2.290008 ACAACGCAATGATCTGGTACCA 60.290 45.455 15.39 15.39 0.00 3.25
3213 4479 6.415702 CACAACATGTTTTCATCTTTGCTTG 58.584 36.000 8.77 0.00 38.64 4.01
3227 4493 5.559770 TCTTTGCTTGAATGTCCAGTATGA 58.440 37.500 0.00 0.00 39.69 2.15
3239 4506 7.898014 ATGTCCAGTATGATTGTACTAGTGA 57.102 36.000 5.39 0.00 39.69 3.41
3386 4653 6.769822 CCTGTGAACTTGAATATGGAAGCTAT 59.230 38.462 0.00 0.00 0.00 2.97
3666 4934 2.470983 TTGACTCAATGGTCGCATCA 57.529 45.000 0.00 0.00 38.91 3.07
3704 4972 1.229082 AGTTCACACCCGGCCTCTA 60.229 57.895 0.00 0.00 0.00 2.43
3804 5072 1.379642 CGATTTCAGGGCTGCTTCCC 61.380 60.000 0.00 5.80 46.93 3.97
3940 5209 5.765182 ACTACATATTTGCTGACCCTATTGC 59.235 40.000 0.00 0.00 0.00 3.56
3960 5229 0.994247 TAGTCAGACTGGTACCCCGA 59.006 55.000 13.84 0.00 0.00 5.14
4008 5277 5.255687 TCATGTATATGGCCATGTGGAATC 58.744 41.667 29.04 11.34 39.53 2.52
4019 5288 3.137176 CCATGTGGAATCTGTATGGAGGT 59.863 47.826 0.00 0.00 40.52 3.85
4063 5363 8.162085 ACTGAATGCATCTCTAAATGTGGATAT 58.838 33.333 0.00 0.00 0.00 1.63
4111 5411 5.764487 TGTTTTCTTGTACATGCATCACA 57.236 34.783 0.00 0.71 0.00 3.58
4171 5471 9.599322 GTCTTCATTACTGTGTGATGTAAAAAG 57.401 33.333 0.00 0.00 32.49 2.27
4173 5473 9.950680 CTTCATTACTGTGTGATGTAAAAAGTT 57.049 29.630 0.00 0.00 32.49 2.66
4329 5630 5.305128 AGAAAATGGAAGGCACAATTGAGAA 59.695 36.000 13.59 0.00 0.00 2.87
4528 5829 9.823647 GAGTATTTCAAATCTGTATCTCCTCAA 57.176 33.333 0.00 0.00 0.00 3.02
4667 5968 7.499232 CCAAGGTATACTGTCCTTTCCAAATAG 59.501 40.741 2.25 0.00 41.44 1.73
4682 5983 8.931385 TTTCCAAATAGCTGAAAATCTTATGC 57.069 30.769 0.00 0.00 0.00 3.14
4801 6102 3.947910 ATGAAGCATTGGTTTGACAGG 57.052 42.857 2.14 0.00 0.00 4.00
4825 6126 6.292919 GGAACTCATATTTGGACGCTAATGTC 60.293 42.308 0.00 0.00 38.17 3.06
5236 6537 8.827832 ATGTAATTGAATTGGAGAAATGGAGA 57.172 30.769 0.00 0.00 0.00 3.71
5275 6576 4.096532 AGCTTGCATGATCAATCACTTCAG 59.903 41.667 0.00 0.00 40.03 3.02
5528 6831 4.160626 ACATAGACTTGAAGCACTCCCTAC 59.839 45.833 0.00 0.00 0.00 3.18
5583 6886 4.262164 CCTTTGAAAGGTTCATGGGTTCAG 60.262 45.833 15.75 0.00 43.95 3.02
5638 6941 2.731976 GTCGATATAGAAAAGGCGGCTG 59.268 50.000 14.21 0.00 0.00 4.85
5929 7232 4.403137 CATGGTGGCACCGCGTTG 62.403 66.667 30.14 20.27 42.58 4.10
5936 7239 2.622011 GGCACCGCGTTGATTCCAA 61.622 57.895 8.22 0.00 0.00 3.53
5993 7296 3.034635 CACTACAGTTAGGAGGCCAGAT 58.965 50.000 5.01 0.00 0.00 2.90
5999 7302 0.543277 TTAGGAGGCCAGATGCACAG 59.457 55.000 5.01 0.00 43.89 3.66
6048 7351 5.084722 GTCAGATGAGTCTTTTCATTTGCG 58.915 41.667 2.65 0.00 38.73 4.85
6154 7457 2.490217 CTACACTGAGGGACGCCG 59.510 66.667 0.00 0.00 0.00 6.46
6282 7586 2.799978 TGTATGTTTGTCAGCACTGTCG 59.200 45.455 0.00 0.00 0.00 4.35
6300 7604 1.986378 TCGTGTTTTTGTGGCGTTTTG 59.014 42.857 0.00 0.00 0.00 2.44
6331 7636 2.276472 TTTCTTGTGTGCTGTGCAAC 57.724 45.000 0.00 0.00 41.47 4.17
6394 7699 2.575532 TGTTCCTCAGAAAGGTTGCAG 58.424 47.619 0.00 0.00 46.32 4.41
6473 7778 8.765517 TCCCTCCGTTTCTAAATATAAGACTTT 58.234 33.333 0.00 0.00 0.00 2.66
6536 7841 7.633789 AGATGTATTTTGGAGTGTAGGTTCAT 58.366 34.615 0.00 0.00 0.00 2.57
6537 7842 7.770897 AGATGTATTTTGGAGTGTAGGTTCATC 59.229 37.037 0.00 0.00 0.00 2.92
6553 7858 5.359009 AGGTTCATCCATTTTGCTCTGTATG 59.641 40.000 0.00 0.00 39.02 2.39
6601 7906 6.379579 AGGACTTATATTTAGGGACGGAGAA 58.620 40.000 0.00 0.00 0.00 2.87
6655 7960 1.696063 ATGGCATAATGACAGTGGCC 58.304 50.000 11.96 11.96 39.76 5.36
6686 7991 6.516718 TGAGATTAGCCTTTAGTATGTCTGC 58.483 40.000 0.00 0.00 0.00 4.26
6740 8045 3.004024 CAAAGATGCAGCGAACACTTT 57.996 42.857 0.00 0.00 0.00 2.66
6749 8054 2.744202 CAGCGAACACTTTGGAAGCTAT 59.256 45.455 0.00 0.00 31.75 2.97
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.941463 GAGAGTGTGTCGTGTGGCAG 60.941 60.000 0.00 0.00 0.00 4.85
1 2 1.067416 GAGAGTGTGTCGTGTGGCA 59.933 57.895 0.00 0.00 0.00 4.92
2 3 0.249489 AAGAGAGTGTGTCGTGTGGC 60.249 55.000 0.00 0.00 0.00 5.01
9 10 4.870991 GCAGGGTTAATAAGAGAGTGTGTC 59.129 45.833 0.00 0.00 0.00 3.67
21 22 3.369052 CGTGAAGGTCAGCAGGGTTAATA 60.369 47.826 0.00 0.00 0.00 0.98
55 56 6.005198 TCCATCTCTAGCTAAGCTAACCTAC 58.995 44.000 0.00 0.00 40.82 3.18
56 57 6.202202 TCCATCTCTAGCTAAGCTAACCTA 57.798 41.667 0.00 0.00 40.82 3.08
82 123 0.887933 GCATGTGACCGTCCCATTTT 59.112 50.000 0.00 0.00 0.00 1.82
89 130 3.179265 CGTCCGCATGTGACCGTC 61.179 66.667 8.11 0.00 0.00 4.79
121 164 0.037605 TCTCCTCCCGTTTTTCGCTC 60.038 55.000 0.00 0.00 38.35 5.03
133 177 1.392710 TTTCTCCGCGGATCTCCTCC 61.393 60.000 31.19 0.00 41.07 4.30
147 191 1.589196 CGATCCCCGTCGCTTTCTC 60.589 63.158 0.00 0.00 34.56 2.87
186 230 5.703876 CAATTGAGTTTCCTGTAAAGAGCC 58.296 41.667 0.00 0.00 0.00 4.70
313 366 2.127271 AATCATCATTGTGGTCGCCA 57.873 45.000 0.00 0.00 0.00 5.69
314 367 3.129287 AGAAAATCATCATTGTGGTCGCC 59.871 43.478 0.00 0.00 0.00 5.54
315 368 4.361451 AGAAAATCATCATTGTGGTCGC 57.639 40.909 0.00 0.00 0.00 5.19
339 955 8.475331 TTTATCTTCTTCTTTTGCGGTAGTAG 57.525 34.615 0.00 0.00 0.00 2.57
345 961 5.790495 CGACTTTTATCTTCTTCTTTTGCGG 59.210 40.000 0.00 0.00 0.00 5.69
346 962 5.790495 CCGACTTTTATCTTCTTCTTTTGCG 59.210 40.000 0.00 0.00 0.00 4.85
349 965 7.307219 CGTGACCGACTTTTATCTTCTTCTTTT 60.307 37.037 0.00 0.00 35.63 2.27
356 972 5.860716 AGTTACGTGACCGACTTTTATCTTC 59.139 40.000 6.88 0.00 37.88 2.87
365 984 2.352127 GGCTTTAGTTACGTGACCGACT 60.352 50.000 6.88 1.73 37.88 4.18
432 1055 5.123344 GGCTTTAGTTACATGACCGACATTT 59.877 40.000 0.00 0.00 37.07 2.32
437 1060 2.835764 AGGGCTTTAGTTACATGACCGA 59.164 45.455 0.00 0.00 0.00 4.69
438 1061 3.261981 AGGGCTTTAGTTACATGACCG 57.738 47.619 0.00 0.00 0.00 4.79
439 1062 4.127907 GCTAGGGCTTTAGTTACATGACC 58.872 47.826 0.00 0.00 35.22 4.02
482 1105 2.422127 CAGACACACTTCACCGGTTTTT 59.578 45.455 2.97 0.00 0.00 1.94
483 1106 2.014128 CAGACACACTTCACCGGTTTT 58.986 47.619 2.97 0.00 0.00 2.43
487 1110 2.310233 CGCAGACACACTTCACCGG 61.310 63.158 0.00 0.00 0.00 5.28
498 1121 1.001293 AGATCAGTCAAAGCGCAGACA 59.999 47.619 23.35 9.38 37.23 3.41
501 1124 1.718396 TCAGATCAGTCAAAGCGCAG 58.282 50.000 11.47 0.00 0.00 5.18
505 1128 6.485984 ACCATAATCATCAGATCAGTCAAAGC 59.514 38.462 0.00 0.00 31.90 3.51
507 1130 6.261603 GCACCATAATCATCAGATCAGTCAAA 59.738 38.462 0.00 0.00 31.90 2.69
508 1131 5.761726 GCACCATAATCATCAGATCAGTCAA 59.238 40.000 0.00 0.00 31.90 3.18
547 1170 0.041090 GAACATGGATGGGGTTGGGT 59.959 55.000 0.00 0.00 0.00 4.51
613 1236 4.314440 GTGGGCCACTCGCTGTCA 62.314 66.667 29.22 0.00 37.74 3.58
692 1315 3.753294 TCCTTTCTCCCGCTATTCATC 57.247 47.619 0.00 0.00 0.00 2.92
693 1316 3.456277 AGTTCCTTTCTCCCGCTATTCAT 59.544 43.478 0.00 0.00 0.00 2.57
694 1317 2.838202 AGTTCCTTTCTCCCGCTATTCA 59.162 45.455 0.00 0.00 0.00 2.57
695 1318 3.459145 GAGTTCCTTTCTCCCGCTATTC 58.541 50.000 0.00 0.00 0.00 1.75
696 1319 2.159085 CGAGTTCCTTTCTCCCGCTATT 60.159 50.000 0.00 0.00 0.00 1.73
698 1321 0.815734 CGAGTTCCTTTCTCCCGCTA 59.184 55.000 0.00 0.00 0.00 4.26
699 1322 0.898789 TCGAGTTCCTTTCTCCCGCT 60.899 55.000 0.00 0.00 0.00 5.52
700 1323 0.458716 CTCGAGTTCCTTTCTCCCGC 60.459 60.000 3.62 0.00 0.00 6.13
701 1324 1.133407 CTCTCGAGTTCCTTTCTCCCG 59.867 57.143 13.13 0.00 0.00 5.14
703 1326 3.349022 TCTCTCTCGAGTTCCTTTCTCC 58.651 50.000 13.13 0.00 38.45 3.71
893 1521 0.822164 ATTAAGCTAGGCGTGGTCGT 59.178 50.000 0.00 0.00 39.49 4.34
894 1522 1.209128 CATTAAGCTAGGCGTGGTCG 58.791 55.000 0.00 0.00 40.37 4.79
895 1523 0.938008 GCATTAAGCTAGGCGTGGTC 59.062 55.000 0.00 0.00 41.15 4.02
896 1524 0.810031 CGCATTAAGCTAGGCGTGGT 60.810 55.000 7.34 0.00 44.11 4.16
897 1525 1.934463 CGCATTAAGCTAGGCGTGG 59.066 57.895 7.34 0.00 44.11 4.94
925 1553 8.273557 CGTGTGCTGGTGATTAGTTTTATATAC 58.726 37.037 0.00 0.00 0.00 1.47
926 1554 7.042321 GCGTGTGCTGGTGATTAGTTTTATATA 60.042 37.037 0.00 0.00 38.39 0.86
927 1555 6.238374 GCGTGTGCTGGTGATTAGTTTTATAT 60.238 38.462 0.00 0.00 38.39 0.86
999 1638 1.678970 GTGGTGGTGGCCCTTCATC 60.679 63.158 0.00 0.00 0.00 2.92
1008 1647 3.498071 AGGTGGTGGTGGTGGTGG 61.498 66.667 0.00 0.00 0.00 4.61
1009 1648 2.203337 CAGGTGGTGGTGGTGGTG 60.203 66.667 0.00 0.00 0.00 4.17
1010 1649 3.498071 CCAGGTGGTGGTGGTGGT 61.498 66.667 0.00 0.00 42.17 4.16
1163 1802 3.967987 ACAGAGACAGGTAGAGGTTGTTT 59.032 43.478 0.00 0.00 0.00 2.83
1167 1806 3.426615 CAGACAGAGACAGGTAGAGGTT 58.573 50.000 0.00 0.00 0.00 3.50
1181 1821 3.604629 GCTACGGAGGCAGACAGA 58.395 61.111 0.00 0.00 0.00 3.41
1227 1869 3.701530 CGCGCGCACAGAACAGAA 61.702 61.111 32.61 0.00 0.00 3.02
1228 1870 4.942481 ACGCGCGCACAGAACAGA 62.942 61.111 32.58 0.00 0.00 3.41
1229 1871 4.707840 CACGCGCGCACAGAACAG 62.708 66.667 32.58 14.51 0.00 3.16
1231 1873 4.993945 CACACGCGCGCACAGAAC 62.994 66.667 32.58 0.00 0.00 3.01
1246 1888 2.106332 CCGATCCGTACCCTGCAC 59.894 66.667 0.00 0.00 0.00 4.57
1346 1995 1.207593 CAAACTCCGGCAGCGAAAG 59.792 57.895 0.00 0.00 0.00 2.62
1347 1996 2.903547 GCAAACTCCGGCAGCGAAA 61.904 57.895 0.00 0.00 0.00 3.46
1348 1997 3.353836 GCAAACTCCGGCAGCGAA 61.354 61.111 0.00 0.00 0.00 4.70
1364 2013 2.699251 AAACCCGTCAGAAAATTCGC 57.301 45.000 0.00 0.00 0.00 4.70
1385 2034 1.831343 CAACACAAACACAGCAGAGC 58.169 50.000 0.00 0.00 0.00 4.09
1388 2038 0.457035 AGGCAACACAAACACAGCAG 59.543 50.000 0.00 0.00 41.41 4.24
1392 2042 3.357203 TCCTAAAGGCAACACAAACACA 58.643 40.909 0.00 0.00 41.41 3.72
1474 2127 1.997606 ACGCGTAATTTAGGACAGTGC 59.002 47.619 11.67 0.00 0.00 4.40
1495 2153 0.179073 CTGTCGGCAATCCAGTAGGG 60.179 60.000 0.00 0.00 34.83 3.53
1581 2239 1.067295 ACCAGCAGGAAGAATCACCA 58.933 50.000 0.35 0.00 38.69 4.17
1748 2406 0.108329 CGGACCAGAATAGCAACCGT 60.108 55.000 0.00 0.00 35.21 4.83
1763 2421 2.657237 CACCAGACCAGACCGGAC 59.343 66.667 9.46 0.10 38.63 4.79
1764 2422 3.311110 GCACCAGACCAGACCGGA 61.311 66.667 9.46 0.00 38.63 5.14
1765 2423 4.742201 CGCACCAGACCAGACCGG 62.742 72.222 0.00 0.00 42.50 5.28
1766 2424 3.991051 ACGCACCAGACCAGACCG 61.991 66.667 0.00 0.00 0.00 4.79
1767 2425 2.357517 CACGCACCAGACCAGACC 60.358 66.667 0.00 0.00 0.00 3.85
1825 2483 2.476051 GCTGAACGCCACATGTCG 59.524 61.111 0.00 0.00 0.00 4.35
1829 2487 3.049674 CACCGCTGAACGCCACAT 61.050 61.111 0.00 0.00 41.76 3.21
1835 2493 0.657368 GAAGTTTGCACCGCTGAACG 60.657 55.000 0.00 0.00 43.15 3.95
1837 2495 1.452145 GGGAAGTTTGCACCGCTGAA 61.452 55.000 0.00 0.00 0.00 3.02
1842 2500 1.841663 CGAGTGGGAAGTTTGCACCG 61.842 60.000 0.00 0.00 0.00 4.94
1859 2518 1.020437 TGATTTGCACAACACTGCGA 58.980 45.000 0.00 0.00 40.31 5.10
1878 2537 8.353423 ACTCTATTTATTTTGGCATCACTTGT 57.647 30.769 0.00 0.00 0.00 3.16
1896 2555 9.979578 TGCAAACACAATTTGATTTACTCTATT 57.020 25.926 2.79 0.00 0.00 1.73
1898 2557 8.629158 ACTGCAAACACAATTTGATTTACTCTA 58.371 29.630 2.79 0.00 0.00 2.43
1900 2559 7.698836 ACTGCAAACACAATTTGATTTACTC 57.301 32.000 2.79 0.00 0.00 2.59
1901 2560 8.413229 AGTACTGCAAACACAATTTGATTTACT 58.587 29.630 2.79 3.47 0.00 2.24
1902 2561 8.574196 AGTACTGCAAACACAATTTGATTTAC 57.426 30.769 2.79 0.00 0.00 2.01
1951 2610 6.767902 GGCAGAAGTGATACCAAATAGATGAA 59.232 38.462 0.00 0.00 0.00 2.57
2058 2807 7.122948 TCCTGTTTATACAAGAGAAGAGGAGAC 59.877 40.741 0.00 0.00 36.85 3.36
2125 2874 7.341445 ACTTTGATCTACTAGATTTCTCGCT 57.659 36.000 0.00 0.00 34.53 4.93
2168 2917 6.755607 GGAGAAAGCATCCTTGATTTTTGATC 59.244 38.462 0.00 0.00 41.31 2.92
2257 3006 4.347000 TCTTATATTTTGGGACGGAGGGAG 59.653 45.833 0.00 0.00 0.00 4.30
2258 3007 4.300345 TCTTATATTTTGGGACGGAGGGA 58.700 43.478 0.00 0.00 0.00 4.20
2259 3008 4.699925 TCTTATATTTTGGGACGGAGGG 57.300 45.455 0.00 0.00 0.00 4.30
2260 3009 4.510340 CGTTCTTATATTTTGGGACGGAGG 59.490 45.833 0.00 0.00 0.00 4.30
2261 3010 5.114081 ACGTTCTTATATTTTGGGACGGAG 58.886 41.667 0.00 0.00 0.00 4.63
2262 3011 5.088680 ACGTTCTTATATTTTGGGACGGA 57.911 39.130 0.00 0.00 0.00 4.69
2263 3012 5.806366 AACGTTCTTATATTTTGGGACGG 57.194 39.130 0.00 0.00 0.00 4.79
2264 3013 7.804129 TCAAAAACGTTCTTATATTTTGGGACG 59.196 33.333 15.53 0.00 39.94 4.79
2265 3014 8.908678 GTCAAAAACGTTCTTATATTTTGGGAC 58.091 33.333 15.53 7.20 39.94 4.46
2266 3015 8.630917 TGTCAAAAACGTTCTTATATTTTGGGA 58.369 29.630 15.53 4.35 39.94 4.37
2267 3016 8.696175 GTGTCAAAAACGTTCTTATATTTTGGG 58.304 33.333 15.53 0.00 39.94 4.12
2268 3017 9.458374 AGTGTCAAAAACGTTCTTATATTTTGG 57.542 29.630 15.53 0.00 39.94 3.28
2272 3021 9.769093 GCATAGTGTCAAAAACGTTCTTATATT 57.231 29.630 0.00 0.00 0.00 1.28
2273 3022 9.162764 AGCATAGTGTCAAAAACGTTCTTATAT 57.837 29.630 0.00 0.00 0.00 0.86
2274 3023 8.542497 AGCATAGTGTCAAAAACGTTCTTATA 57.458 30.769 0.00 0.00 0.00 0.98
2275 3024 7.435068 AGCATAGTGTCAAAAACGTTCTTAT 57.565 32.000 0.00 0.00 0.00 1.73
2276 3025 6.854496 AGCATAGTGTCAAAAACGTTCTTA 57.146 33.333 0.00 0.00 0.00 2.10
2277 3026 5.751243 AGCATAGTGTCAAAAACGTTCTT 57.249 34.783 0.00 0.00 0.00 2.52
2278 3027 5.989777 AGTAGCATAGTGTCAAAAACGTTCT 59.010 36.000 0.00 0.00 0.00 3.01
2279 3028 6.071463 CAGTAGCATAGTGTCAAAAACGTTC 58.929 40.000 0.00 0.00 37.24 3.95
2280 3029 5.985781 CAGTAGCATAGTGTCAAAAACGTT 58.014 37.500 0.00 0.00 37.24 3.99
2281 3030 5.591643 CAGTAGCATAGTGTCAAAAACGT 57.408 39.130 0.00 0.00 37.24 3.99
2292 3041 5.989777 AGAACGTTTTTGACAGTAGCATAGT 59.010 36.000 0.46 0.00 0.00 2.12
2293 3042 6.467723 AGAACGTTTTTGACAGTAGCATAG 57.532 37.500 0.46 0.00 0.00 2.23
2294 3043 6.854496 AAGAACGTTTTTGACAGTAGCATA 57.146 33.333 0.46 0.00 0.00 3.14
2295 3044 5.751243 AAGAACGTTTTTGACAGTAGCAT 57.249 34.783 0.46 0.00 0.00 3.79
2296 3045 6.854496 ATAAGAACGTTTTTGACAGTAGCA 57.146 33.333 13.87 0.00 0.00 3.49
2297 3046 9.821662 AAATATAAGAACGTTTTTGACAGTAGC 57.178 29.630 13.87 0.00 0.00 3.58
2300 3049 9.458374 CCAAAATATAAGAACGTTTTTGACAGT 57.542 29.630 13.87 0.00 38.79 3.55
2301 3050 8.911662 CCCAAAATATAAGAACGTTTTTGACAG 58.088 33.333 13.87 1.94 38.79 3.51
2302 3051 8.630917 TCCCAAAATATAAGAACGTTTTTGACA 58.369 29.630 13.87 0.01 38.79 3.58
2303 3052 8.908678 GTCCCAAAATATAAGAACGTTTTTGAC 58.091 33.333 13.87 5.89 38.79 3.18
2304 3053 7.804129 CGTCCCAAAATATAAGAACGTTTTTGA 59.196 33.333 13.87 2.81 38.79 2.69
2305 3054 7.061326 CCGTCCCAAAATATAAGAACGTTTTTG 59.939 37.037 13.87 12.16 37.14 2.44
2306 3055 7.040548 TCCGTCCCAAAATATAAGAACGTTTTT 60.041 33.333 9.22 9.22 0.00 1.94
2307 3056 6.430616 TCCGTCCCAAAATATAAGAACGTTTT 59.569 34.615 0.46 0.00 0.00 2.43
2308 3057 5.939296 TCCGTCCCAAAATATAAGAACGTTT 59.061 36.000 0.46 0.00 0.00 3.60
2309 3058 5.490159 TCCGTCCCAAAATATAAGAACGTT 58.510 37.500 0.00 0.00 0.00 3.99
2310 3059 5.088680 TCCGTCCCAAAATATAAGAACGT 57.911 39.130 0.00 0.00 0.00 3.99
2311 3060 4.510340 CCTCCGTCCCAAAATATAAGAACG 59.490 45.833 0.00 0.00 0.00 3.95
2312 3061 5.434408 ACCTCCGTCCCAAAATATAAGAAC 58.566 41.667 0.00 0.00 0.00 3.01
2313 3062 5.703730 ACCTCCGTCCCAAAATATAAGAA 57.296 39.130 0.00 0.00 0.00 2.52
2314 3063 6.811634 TTACCTCCGTCCCAAAATATAAGA 57.188 37.500 0.00 0.00 0.00 2.10
2315 3064 6.072673 GCATTACCTCCGTCCCAAAATATAAG 60.073 42.308 0.00 0.00 0.00 1.73
2316 3065 5.766174 GCATTACCTCCGTCCCAAAATATAA 59.234 40.000 0.00 0.00 0.00 0.98
2317 3066 5.163184 TGCATTACCTCCGTCCCAAAATATA 60.163 40.000 0.00 0.00 0.00 0.86
2318 3067 4.142038 GCATTACCTCCGTCCCAAAATAT 58.858 43.478 0.00 0.00 0.00 1.28
2319 3068 3.054287 TGCATTACCTCCGTCCCAAAATA 60.054 43.478 0.00 0.00 0.00 1.40
2320 3069 2.291282 TGCATTACCTCCGTCCCAAAAT 60.291 45.455 0.00 0.00 0.00 1.82
2321 3070 1.074084 TGCATTACCTCCGTCCCAAAA 59.926 47.619 0.00 0.00 0.00 2.44
2322 3071 0.693622 TGCATTACCTCCGTCCCAAA 59.306 50.000 0.00 0.00 0.00 3.28
2323 3072 0.916086 ATGCATTACCTCCGTCCCAA 59.084 50.000 0.00 0.00 0.00 4.12
2324 3073 0.180171 CATGCATTACCTCCGTCCCA 59.820 55.000 0.00 0.00 0.00 4.37
2325 3074 1.166531 GCATGCATTACCTCCGTCCC 61.167 60.000 14.21 0.00 0.00 4.46
2326 3075 1.166531 GGCATGCATTACCTCCGTCC 61.167 60.000 21.36 0.00 0.00 4.79
2327 3076 0.463654 TGGCATGCATTACCTCCGTC 60.464 55.000 21.36 0.00 0.00 4.79
2328 3077 0.183492 ATGGCATGCATTACCTCCGT 59.817 50.000 21.36 0.00 0.00 4.69
2329 3078 0.877071 GATGGCATGCATTACCTCCG 59.123 55.000 21.36 0.00 0.00 4.63
2330 3079 1.610522 GTGATGGCATGCATTACCTCC 59.389 52.381 21.36 0.00 0.00 4.30
2331 3080 1.265095 CGTGATGGCATGCATTACCTC 59.735 52.381 21.36 5.08 0.00 3.85
2332 3081 1.311859 CGTGATGGCATGCATTACCT 58.688 50.000 21.36 0.00 0.00 3.08
2333 3082 1.024271 ACGTGATGGCATGCATTACC 58.976 50.000 21.36 8.35 34.29 2.85
2334 3083 2.097304 TCAACGTGATGGCATGCATTAC 59.903 45.455 21.36 15.56 34.29 1.89
2373 3123 3.265791 CACAGTAAGAAGGACATGGAGC 58.734 50.000 0.00 0.00 0.00 4.70
2374 3124 4.248859 CACACAGTAAGAAGGACATGGAG 58.751 47.826 0.00 0.00 0.00 3.86
2375 3125 3.557054 GCACACAGTAAGAAGGACATGGA 60.557 47.826 0.00 0.00 0.00 3.41
2377 3127 3.402110 TGCACACAGTAAGAAGGACATG 58.598 45.455 0.00 0.00 0.00 3.21
2378 3128 3.769739 TGCACACAGTAAGAAGGACAT 57.230 42.857 0.00 0.00 0.00 3.06
2379 3129 3.552132 TTGCACACAGTAAGAAGGACA 57.448 42.857 0.00 0.00 0.00 4.02
2394 3144 2.821969 AGATCCTGAAACACCATTGCAC 59.178 45.455 0.00 0.00 0.00 4.57
2471 3224 7.532682 TGCCAACACAAGAGAAAATAAAAAC 57.467 32.000 0.00 0.00 0.00 2.43
2475 3228 7.768120 ACAATTTGCCAACACAAGAGAAAATAA 59.232 29.630 0.00 0.00 0.00 1.40
2477 3230 6.114767 ACAATTTGCCAACACAAGAGAAAAT 58.885 32.000 0.00 0.00 0.00 1.82
2498 3251 2.228138 AACGCAGACGACCTAAACAA 57.772 45.000 0.00 0.00 43.93 2.83
2536 3289 1.911357 TGTGTGGCATGATCTCTTCCT 59.089 47.619 0.00 0.00 0.00 3.36
2560 3313 6.159988 ACTAACAGAATTCAGTAGTCACAGC 58.840 40.000 8.44 0.00 0.00 4.40
2582 3343 3.055385 AGCCGTACAAACACCATGATACT 60.055 43.478 0.00 0.00 0.00 2.12
2583 3344 3.267483 AGCCGTACAAACACCATGATAC 58.733 45.455 0.00 0.00 0.00 2.24
2584 3345 3.620427 AGCCGTACAAACACCATGATA 57.380 42.857 0.00 0.00 0.00 2.15
2611 3373 2.102578 CCCAATTGGTTAAGGCCTCAG 58.897 52.381 22.91 0.00 0.00 3.35
2612 3374 2.230130 CCCAATTGGTTAAGGCCTCA 57.770 50.000 22.91 0.00 0.00 3.86
2628 3391 6.783708 AAATCTTGTTGACTGTAAAACCCA 57.216 33.333 4.06 0.00 0.00 4.51
2634 3397 8.506168 AGAACTGAAAATCTTGTTGACTGTAA 57.494 30.769 0.00 0.00 0.00 2.41
2642 3405 7.840931 ACCTTTGAAGAACTGAAAATCTTGTT 58.159 30.769 0.00 0.00 36.08 2.83
2646 3409 9.971922 CATTTACCTTTGAAGAACTGAAAATCT 57.028 29.630 0.00 0.00 0.00 2.40
2679 3443 7.755591 AGATGCAACAATGTTCTTACACATAG 58.244 34.615 0.00 0.00 36.30 2.23
2688 3452 4.023450 CACACTGAGATGCAACAATGTTCT 60.023 41.667 0.00 0.00 0.00 3.01
2703 3467 1.518056 ATTGTTGGCGCCACACTGAG 61.518 55.000 32.95 0.00 0.00 3.35
2719 3483 9.875675 CCCACAAAAACATGTACAAAATTATTG 57.124 29.630 0.00 4.55 30.84 1.90
2823 4080 7.803189 CACGGTAGCAAAATATTTAATAGGCAG 59.197 37.037 0.01 0.00 0.00 4.85
2857 4114 5.741982 GCGTTTATTTATTGCCACCTAACTG 59.258 40.000 0.00 0.00 0.00 3.16
2858 4115 5.163591 GGCGTTTATTTATTGCCACCTAACT 60.164 40.000 0.00 0.00 45.06 2.24
2859 4116 5.038683 GGCGTTTATTTATTGCCACCTAAC 58.961 41.667 0.00 0.00 45.06 2.34
2887 4145 1.020861 TGCAGCAATGCAGACTACGG 61.021 55.000 8.35 0.00 40.23 4.02
3083 4349 7.215789 ACAATGGTTATTGCATTTGTCAAGAA 58.784 30.769 0.00 0.00 46.05 2.52
3141 4407 5.036117 TCAGCCTTTTATGGTACCAGATC 57.964 43.478 21.41 5.02 0.00 2.75
3213 4479 8.414003 TCACTAGTACAATCATACTGGACATTC 58.586 37.037 0.00 0.00 37.17 2.67
3227 4493 5.435686 TCCAAATGGCTCACTAGTACAAT 57.564 39.130 0.00 0.00 34.44 2.71
3239 4506 4.373156 ACTAGAACAGTTCCAAATGGCT 57.627 40.909 9.85 0.00 31.59 4.75
3386 4653 0.250467 GCTCAACAGACCAGAGGCAA 60.250 55.000 0.00 0.00 0.00 4.52
3666 4934 3.074412 CTCTTTGTGGTTGTATCGCCTT 58.926 45.455 0.00 0.00 0.00 4.35
3960 5229 6.160459 AGGGTTGGACATAGGTCATATTTCTT 59.840 38.462 10.08 0.00 46.17 2.52
4171 5471 4.702131 ACTCCATTGCTTGATACAAGGAAC 59.298 41.667 17.51 1.81 30.65 3.62
4173 5473 4.574674 ACTCCATTGCTTGATACAAGGA 57.425 40.909 12.36 7.49 30.65 3.36
4292 5593 6.432472 CCTTCCATTTTCTCTAGCTTCTTTGT 59.568 38.462 0.00 0.00 0.00 2.83
4329 5630 5.471456 CAGCCTACTTCACAAGACTTGATTT 59.529 40.000 21.95 0.00 0.00 2.17
4528 5829 9.426534 AATTTCTGCTTATTTAATAGCTCCCTT 57.573 29.630 0.00 0.00 0.00 3.95
4667 5968 4.622701 AACTCCGCATAAGATTTTCAGC 57.377 40.909 0.00 0.00 0.00 4.26
4682 5983 2.724977 TAGCACTGAGACAAACTCCG 57.275 50.000 0.00 0.00 44.34 4.63
4801 6102 6.604735 ACATTAGCGTCCAAATATGAGTTC 57.395 37.500 0.00 0.00 0.00 3.01
4825 6126 3.313012 TCCTCAATGTTAGTCACGTGG 57.687 47.619 17.00 0.00 0.00 4.94
5275 6576 4.082733 GGAATGGCAAGTTTACTGACCTTC 60.083 45.833 0.00 0.00 0.00 3.46
5583 6886 2.884894 AATCGTATCCAAGACCGGAC 57.115 50.000 9.46 0.10 38.07 4.79
5638 6941 1.734465 GACACCATTGTAGTGCAGAGC 59.266 52.381 0.00 0.00 38.87 4.09
5869 7172 7.688343 TGATACATCATAAATACTGCATCCCA 58.312 34.615 0.00 0.00 0.00 4.37
5999 7302 7.930217 TCTATAATAAACAGGTTTCATGCTGC 58.070 34.615 0.00 0.00 34.23 5.25
6048 7351 0.940991 CTTTTGCGGTTCCAAGCTGC 60.941 55.000 0.00 0.00 0.00 5.25
6154 7457 0.721718 GCCGTGTAGCACTGAACATC 59.278 55.000 0.00 0.00 31.34 3.06
6282 7586 2.347150 CCTCAAAACGCCACAAAAACAC 59.653 45.455 0.00 0.00 0.00 3.32
6331 7636 4.156477 TCCTTTACAAAACAGAATGGGGG 58.844 43.478 0.00 0.00 43.62 5.40
6363 7668 2.437651 TCTGAGGAACAACCATGTGACA 59.562 45.455 0.00 0.00 40.46 3.58
6394 7699 7.333528 TCAGATTTATGTTAAATGACCAGGC 57.666 36.000 0.00 0.00 0.00 4.85
6514 7819 6.177610 GGATGAACCTACACTCCAAAATACA 58.822 40.000 0.00 0.00 35.41 2.29
6522 7827 4.142381 GCAAAATGGATGAACCTACACTCC 60.142 45.833 0.00 0.00 39.86 3.85
6531 7836 6.199937 ACATACAGAGCAAAATGGATGAAC 57.800 37.500 4.46 0.00 39.69 3.18
6536 7841 5.428253 GGACTACATACAGAGCAAAATGGA 58.572 41.667 0.00 0.00 0.00 3.41
6537 7842 4.271049 CGGACTACATACAGAGCAAAATGG 59.729 45.833 0.00 0.00 0.00 3.16
6553 7858 7.224167 CCTTTTAGACATTCCAATACGGACTAC 59.776 40.741 0.00 0.00 46.36 2.73
6570 7875 9.473640 CGTCCCTAAATATAAGTCCTTTTAGAC 57.526 37.037 0.00 0.00 34.90 2.59
6578 7883 6.661304 TTCTCCGTCCCTAAATATAAGTCC 57.339 41.667 0.00 0.00 0.00 3.85
6617 7922 8.995027 ATGCCATTATGGTTCTCTATGTTTTA 57.005 30.769 13.28 0.00 40.46 1.52
6655 7960 5.923204 ACTAAAGGCTAATCTCAGTGATGG 58.077 41.667 0.00 0.00 35.21 3.51
6686 7991 7.225538 CACCAGTTACCTGCTAGATTAATCTTG 59.774 40.741 22.60 20.58 36.56 3.02
6728 8033 0.947244 AGCTTCCAAAGTGTTCGCTG 59.053 50.000 0.00 0.00 0.00 5.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.