Multiple sequence alignment - TraesCS5A01G143100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G143100 chr5A 100.000 3695 0 0 1 3695 317241437 317237743 0.000000e+00 6824.0
1 TraesCS5A01G143100 chr5A 90.840 262 21 3 3425 3685 12013434 12013175 7.590000e-92 348.0
2 TraesCS5A01G143100 chr5A 85.714 63 6 2 1188 1250 660799241 660799300 3.080000e-06 63.9
3 TraesCS5A01G143100 chr5B 90.892 2734 128 50 713 3409 267761421 267758772 0.000000e+00 3557.0
4 TraesCS5A01G143100 chr5B 89.786 421 18 10 1 401 267761834 267761419 1.970000e-142 516.0
5 TraesCS5A01G143100 chr5B 91.729 266 19 3 3421 3685 41814146 41814409 2.100000e-97 366.0
6 TraesCS5A01G143100 chr5B 80.822 146 26 2 1185 1329 461141440 461141296 3.020000e-21 113.0
7 TraesCS5A01G143100 chr5D 91.778 2250 86 37 713 2942 238072694 238074864 0.000000e+00 3038.0
8 TraesCS5A01G143100 chr5D 90.431 418 19 9 1 401 238072283 238072696 7.030000e-147 531.0
9 TraesCS5A01G143100 chr5D 91.094 393 18 8 2963 3342 238074928 238075316 1.970000e-142 516.0
10 TraesCS5A01G143100 chr5D 80.822 146 26 2 1185 1329 384348077 384347933 3.020000e-21 113.0
11 TraesCS5A01G143100 chr7A 93.930 313 19 0 401 713 82191757 82192069 1.200000e-129 473.0
12 TraesCS5A01G143100 chr7A 92.212 321 24 1 399 718 75822684 75823004 1.560000e-123 453.0
13 TraesCS5A01G143100 chr7A 91.729 266 19 3 3421 3685 338121257 338121520 2.100000e-97 366.0
14 TraesCS5A01G143100 chr7A 80.672 238 34 10 1451 1682 489163234 489163465 1.360000e-39 174.0
15 TraesCS5A01G143100 chr7A 75.330 227 43 12 1457 1678 430240738 430240956 3.040000e-16 97.1
16 TraesCS5A01G143100 chr4A 93.291 313 20 1 399 710 613414208 613414520 9.350000e-126 460.0
17 TraesCS5A01G143100 chr4A 92.971 313 19 3 401 711 76168847 76168536 1.560000e-123 453.0
18 TraesCS5A01G143100 chr4A 83.969 262 28 12 1433 1688 173630684 173630937 4.770000e-59 239.0
19 TraesCS5A01G143100 chr1A 93.291 313 18 3 401 711 205392139 205391828 3.360000e-125 459.0
20 TraesCS5A01G143100 chr1A 92.949 312 21 1 401 711 189532544 189532855 1.560000e-123 453.0
21 TraesCS5A01G143100 chr6D 92.453 318 23 1 399 715 377567594 377567911 1.560000e-123 453.0
22 TraesCS5A01G143100 chr2D 92.453 318 23 1 399 715 36275429 36275112 1.560000e-123 453.0
23 TraesCS5A01G143100 chr4D 92.381 315 23 1 406 720 74225945 74226258 7.280000e-122 448.0
24 TraesCS5A01G143100 chr4D 82.759 261 33 10 1433 1688 305141316 305141569 4.800000e-54 222.0
25 TraesCS5A01G143100 chr4D 85.714 63 6 2 1188 1250 481912565 481912506 3.080000e-06 63.9
26 TraesCS5A01G143100 chr2A 92.075 265 20 1 3421 3685 293964250 293964513 4.510000e-99 372.0
27 TraesCS5A01G143100 chr3B 91.729 266 19 3 3421 3685 150513807 150514070 2.100000e-97 366.0
28 TraesCS5A01G143100 chr3B 91.729 266 19 3 3421 3685 192025259 192025522 2.100000e-97 366.0
29 TraesCS5A01G143100 chr3A 91.635 263 20 2 3424 3685 746889604 746889343 2.710000e-96 363.0
30 TraesCS5A01G143100 chr6A 91.353 266 20 3 3421 3685 457309303 457309040 9.760000e-96 361.0
31 TraesCS5A01G143100 chr1B 90.977 266 21 3 3421 3685 31756167 31756430 4.540000e-94 355.0
32 TraesCS5A01G143100 chr4B 82.879 257 33 9 1433 1685 381374097 381374346 1.730000e-53 220.0
33 TraesCS5A01G143100 chr4B 85.714 63 6 2 1188 1250 611553517 611553458 3.080000e-06 63.9
34 TraesCS5A01G143100 chr7D 79.918 244 37 10 1445 1682 438368643 438368880 6.350000e-38 169.0
35 TraesCS5A01G143100 chr7B 80.252 238 35 10 1451 1682 455272022 455271791 6.350000e-38 169.0
36 TraesCS5A01G143100 chr3D 80.711 197 36 2 1439 1634 39120472 39120277 6.390000e-33 152.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G143100 chr5A 317237743 317241437 3694 True 6824.000000 6824 100.000 1 3695 1 chr5A.!!$R2 3694
1 TraesCS5A01G143100 chr5B 267758772 267761834 3062 True 2036.500000 3557 90.339 1 3409 2 chr5B.!!$R2 3408
2 TraesCS5A01G143100 chr5D 238072283 238075316 3033 False 1361.666667 3038 91.101 1 3342 3 chr5D.!!$F1 3341

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
387 418 0.038310 GCCTACCAAACAAGCCTCCT 59.962 55.0 0.0 0.0 0.00 3.69 F
609 640 0.182537 TGGAAAGGTGTGGTCAGGTG 59.817 55.0 0.0 0.0 0.00 4.00 F
1101 1134 0.322906 AGGCTACTGCTTTCCTTGGC 60.323 55.0 0.0 0.0 39.59 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1312 1345 0.755698 TGGTACCTGGGAGATCTCGC 60.756 60.0 28.04 28.04 42.16 5.03 R
2054 2094 1.101049 CACTGTTGGTGGTGGTGGAC 61.101 60.0 0.00 0.00 41.90 4.02 R
2942 2996 0.400213 TCCTCATTTCCACGCCAACT 59.600 50.0 0.00 0.00 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 3.187227 AGCAAAGCACACTTGAATCTACG 59.813 43.478 0.00 0.00 35.85 3.51
68 69 5.794945 ACGCTCATCAACAATTAACAAATCG 59.205 36.000 0.00 0.00 0.00 3.34
155 157 2.028748 GCATGCAAAGACCTGACCAAAT 60.029 45.455 14.21 0.00 0.00 2.32
156 158 3.193267 GCATGCAAAGACCTGACCAAATA 59.807 43.478 14.21 0.00 0.00 1.40
171 175 6.658849 TGACCAAATACATGCATACCTAGTT 58.341 36.000 0.00 0.00 0.00 2.24
226 242 6.306987 ACCCTACATGTTTCTTCAAATCAGT 58.693 36.000 2.30 0.00 0.00 3.41
301 327 6.507900 TGTCAAAATATCTAGGCGAGAGAAG 58.492 40.000 3.19 0.00 37.70 2.85
310 336 0.172352 GGCGAGAGAAGAGTCTGTGG 59.828 60.000 0.00 0.00 32.80 4.17
349 375 0.109272 TCTCCGCAACGCTACAAGAG 60.109 55.000 0.00 0.00 0.00 2.85
387 418 0.038310 GCCTACCAAACAAGCCTCCT 59.962 55.000 0.00 0.00 0.00 3.69
398 429 2.032681 GCCTCCTGCCGTCAGTTT 59.967 61.111 0.00 0.00 38.66 2.66
399 430 1.600916 GCCTCCTGCCGTCAGTTTT 60.601 57.895 0.00 0.00 38.66 2.43
400 431 0.321298 GCCTCCTGCCGTCAGTTTTA 60.321 55.000 0.00 0.00 38.66 1.52
401 432 1.726853 CCTCCTGCCGTCAGTTTTAG 58.273 55.000 0.00 0.00 38.66 1.85
402 433 1.676014 CCTCCTGCCGTCAGTTTTAGG 60.676 57.143 0.00 0.00 38.66 2.69
403 434 1.002087 CTCCTGCCGTCAGTTTTAGGT 59.998 52.381 0.00 0.00 38.66 3.08
404 435 1.001633 TCCTGCCGTCAGTTTTAGGTC 59.998 52.381 0.00 0.00 38.66 3.85
405 436 1.439679 CTGCCGTCAGTTTTAGGTCC 58.560 55.000 0.00 0.00 35.61 4.46
406 437 1.002087 CTGCCGTCAGTTTTAGGTCCT 59.998 52.381 0.00 0.00 35.61 3.85
407 438 1.270625 TGCCGTCAGTTTTAGGTCCTG 60.271 52.381 0.00 0.00 0.00 3.86
408 439 1.270678 GCCGTCAGTTTTAGGTCCTGT 60.271 52.381 0.00 0.00 0.00 4.00
409 440 2.809299 GCCGTCAGTTTTAGGTCCTGTT 60.809 50.000 0.00 0.00 0.00 3.16
410 441 3.473625 CCGTCAGTTTTAGGTCCTGTTT 58.526 45.455 0.00 0.00 0.00 2.83
411 442 3.250040 CCGTCAGTTTTAGGTCCTGTTTG 59.750 47.826 0.00 0.00 0.00 2.93
412 443 3.250040 CGTCAGTTTTAGGTCCTGTTTGG 59.750 47.826 0.00 0.00 37.10 3.28
413 444 4.204799 GTCAGTTTTAGGTCCTGTTTGGT 58.795 43.478 0.00 0.00 37.07 3.67
414 445 4.643334 GTCAGTTTTAGGTCCTGTTTGGTT 59.357 41.667 0.00 0.00 37.07 3.67
415 446 5.126545 GTCAGTTTTAGGTCCTGTTTGGTTT 59.873 40.000 0.00 0.00 37.07 3.27
416 447 5.358725 TCAGTTTTAGGTCCTGTTTGGTTTC 59.641 40.000 0.00 0.00 37.07 2.78
417 448 5.126384 CAGTTTTAGGTCCTGTTTGGTTTCA 59.874 40.000 0.00 0.00 37.07 2.69
418 449 5.717654 AGTTTTAGGTCCTGTTTGGTTTCAA 59.282 36.000 0.00 0.00 37.07 2.69
419 450 6.211785 AGTTTTAGGTCCTGTTTGGTTTCAAA 59.788 34.615 0.00 0.00 40.23 2.69
420 451 6.800072 TTTAGGTCCTGTTTGGTTTCAAAT 57.200 33.333 0.00 0.00 43.73 2.32
421 452 7.899648 TTTAGGTCCTGTTTGGTTTCAAATA 57.100 32.000 0.00 0.00 43.73 1.40
422 453 7.899648 TTAGGTCCTGTTTGGTTTCAAATAA 57.100 32.000 0.00 0.00 43.73 1.40
423 454 6.405278 AGGTCCTGTTTGGTTTCAAATAAG 57.595 37.500 0.00 0.00 43.73 1.73
424 455 5.897250 AGGTCCTGTTTGGTTTCAAATAAGT 59.103 36.000 0.00 0.00 43.73 2.24
425 456 6.040504 AGGTCCTGTTTGGTTTCAAATAAGTC 59.959 38.462 0.00 0.00 43.73 3.01
426 457 6.183360 GGTCCTGTTTGGTTTCAAATAAGTCA 60.183 38.462 0.00 0.00 43.73 3.41
427 458 6.695713 GTCCTGTTTGGTTTCAAATAAGTCAC 59.304 38.462 0.00 0.00 43.73 3.67
428 459 5.983118 CCTGTTTGGTTTCAAATAAGTCACC 59.017 40.000 0.00 0.00 43.73 4.02
429 460 6.406400 CCTGTTTGGTTTCAAATAAGTCACCA 60.406 38.462 0.00 0.00 43.73 4.17
430 461 6.936279 TGTTTGGTTTCAAATAAGTCACCAA 58.064 32.000 0.00 0.00 43.73 3.67
431 462 6.814146 TGTTTGGTTTCAAATAAGTCACCAAC 59.186 34.615 1.03 0.00 42.59 3.77
432 463 6.783708 TTGGTTTCAAATAAGTCACCAACT 57.216 33.333 0.00 0.00 38.97 3.16
433 464 7.547722 GTTTGGTTTCAAATAAGTCACCAACTT 59.452 33.333 1.03 0.00 42.59 2.66
446 477 8.441312 AAGTCACCAACTTATAAGTCGAAAAA 57.559 30.769 18.28 1.23 46.55 1.94
447 478 8.617290 AGTCACCAACTTATAAGTCGAAAAAT 57.383 30.769 18.28 0.00 38.57 1.82
448 479 9.715121 AGTCACCAACTTATAAGTCGAAAAATA 57.285 29.630 18.28 0.00 38.57 1.40
476 507 9.187455 GAAAAATGACTTATTTTGCTAAACGGA 57.813 29.630 0.00 0.00 45.74 4.69
477 508 8.515473 AAAATGACTTATTTTGCTAAACGGAC 57.485 30.769 0.00 0.00 44.98 4.79
478 509 5.616488 TGACTTATTTTGCTAAACGGACC 57.384 39.130 0.00 0.00 0.00 4.46
479 510 4.456566 TGACTTATTTTGCTAAACGGACCC 59.543 41.667 0.00 0.00 0.00 4.46
480 511 4.400120 ACTTATTTTGCTAAACGGACCCA 58.600 39.130 0.00 0.00 0.00 4.51
481 512 4.828387 ACTTATTTTGCTAAACGGACCCAA 59.172 37.500 0.00 0.00 0.00 4.12
482 513 5.302313 ACTTATTTTGCTAAACGGACCCAAA 59.698 36.000 0.00 0.00 0.00 3.28
483 514 4.882842 ATTTTGCTAAACGGACCCAAAT 57.117 36.364 0.00 0.00 0.00 2.32
484 515 4.674281 TTTTGCTAAACGGACCCAAATT 57.326 36.364 0.00 0.00 0.00 1.82
485 516 5.786264 TTTTGCTAAACGGACCCAAATTA 57.214 34.783 0.00 0.00 0.00 1.40
486 517 5.986501 TTTGCTAAACGGACCCAAATTAT 57.013 34.783 0.00 0.00 0.00 1.28
487 518 7.463961 TTTTGCTAAACGGACCCAAATTATA 57.536 32.000 0.00 0.00 0.00 0.98
488 519 7.463961 TTTGCTAAACGGACCCAAATTATAA 57.536 32.000 0.00 0.00 0.00 0.98
489 520 6.687081 TGCTAAACGGACCCAAATTATAAG 57.313 37.500 0.00 0.00 0.00 1.73
490 521 6.181908 TGCTAAACGGACCCAAATTATAAGT 58.818 36.000 0.00 0.00 0.00 2.24
491 522 6.316890 TGCTAAACGGACCCAAATTATAAGTC 59.683 38.462 0.00 0.00 0.00 3.01
492 523 6.316890 GCTAAACGGACCCAAATTATAAGTCA 59.683 38.462 4.71 0.00 0.00 3.41
493 524 6.505044 AAACGGACCCAAATTATAAGTCAC 57.495 37.500 4.71 0.00 0.00 3.67
494 525 4.520179 ACGGACCCAAATTATAAGTCACC 58.480 43.478 4.71 0.00 0.00 4.02
495 526 3.881089 CGGACCCAAATTATAAGTCACCC 59.119 47.826 4.71 0.00 0.00 4.61
496 527 4.212716 GGACCCAAATTATAAGTCACCCC 58.787 47.826 4.71 0.00 0.00 4.95
497 528 4.325501 GGACCCAAATTATAAGTCACCCCA 60.326 45.833 4.71 0.00 0.00 4.96
498 529 5.265989 GACCCAAATTATAAGTCACCCCAA 58.734 41.667 0.00 0.00 0.00 4.12
499 530 5.020795 ACCCAAATTATAAGTCACCCCAAC 58.979 41.667 0.00 0.00 0.00 3.77
500 531 5.222463 ACCCAAATTATAAGTCACCCCAACT 60.222 40.000 0.00 0.00 0.00 3.16
501 532 5.719563 CCCAAATTATAAGTCACCCCAACTT 59.280 40.000 0.00 0.00 40.06 2.66
502 533 6.893005 CCCAAATTATAAGTCACCCCAACTTA 59.107 38.462 0.00 0.00 41.91 2.24
503 534 7.563556 CCCAAATTATAAGTCACCCCAACTTAT 59.436 37.037 11.86 11.86 46.48 1.73
504 535 9.635404 CCAAATTATAAGTCACCCCAACTTATA 57.365 33.333 10.26 10.26 44.28 0.98
509 540 5.836024 AAGTCACCCCAACTTATAAGTCA 57.164 39.130 18.28 0.00 38.57 3.41
510 541 6.388619 AAGTCACCCCAACTTATAAGTCAT 57.611 37.500 18.28 1.19 38.57 3.06
511 542 7.504926 AAGTCACCCCAACTTATAAGTCATA 57.495 36.000 18.28 0.00 38.57 2.15
512 543 7.504926 AGTCACCCCAACTTATAAGTCATAA 57.495 36.000 18.28 0.00 38.57 1.90
523 554 7.484035 CTTATAAGTCATAAGTTGCTCCACC 57.516 40.000 4.18 0.00 40.84 4.61
524 555 2.789409 AGTCATAAGTTGCTCCACCC 57.211 50.000 0.00 0.00 0.00 4.61
525 556 1.282157 AGTCATAAGTTGCTCCACCCC 59.718 52.381 0.00 0.00 0.00 4.95
526 557 1.004277 GTCATAAGTTGCTCCACCCCA 59.996 52.381 0.00 0.00 0.00 4.96
527 558 1.707989 TCATAAGTTGCTCCACCCCAA 59.292 47.619 0.00 0.00 0.00 4.12
528 559 1.818674 CATAAGTTGCTCCACCCCAAC 59.181 52.381 0.00 0.00 41.13 3.77
529 560 3.674278 AGTTGCTCCACCCCAACT 58.326 55.556 0.56 0.56 44.86 3.16
530 561 1.930520 AGTTGCTCCACCCCAACTT 59.069 52.632 0.56 0.00 46.86 2.66
531 562 1.145571 AGTTGCTCCACCCCAACTTA 58.854 50.000 0.56 0.00 46.86 2.24
532 563 1.710809 AGTTGCTCCACCCCAACTTAT 59.289 47.619 0.56 0.00 46.86 1.73
533 564 2.916934 AGTTGCTCCACCCCAACTTATA 59.083 45.455 0.56 0.00 46.86 0.98
534 565 3.332485 AGTTGCTCCACCCCAACTTATAA 59.668 43.478 0.56 0.00 46.86 0.98
535 566 3.359695 TGCTCCACCCCAACTTATAAC 57.640 47.619 0.00 0.00 0.00 1.89
536 567 2.916934 TGCTCCACCCCAACTTATAACT 59.083 45.455 0.00 0.00 0.00 2.24
537 568 3.332485 TGCTCCACCCCAACTTATAACTT 59.668 43.478 0.00 0.00 0.00 2.66
538 569 4.536888 TGCTCCACCCCAACTTATAACTTA 59.463 41.667 0.00 0.00 0.00 2.24
539 570 5.192923 TGCTCCACCCCAACTTATAACTTAT 59.807 40.000 0.00 0.00 0.00 1.73
540 571 6.387513 TGCTCCACCCCAACTTATAACTTATA 59.612 38.462 0.00 0.00 0.00 0.98
541 572 7.092354 TGCTCCACCCCAACTTATAACTTATAA 60.092 37.037 2.02 2.02 0.00 0.98
554 585 9.916360 CTTATAACTTATAAGTCACCCCCTTTT 57.084 33.333 18.28 1.87 41.58 2.27
557 588 5.737860 ACTTATAAGTCACCCCCTTTTACG 58.262 41.667 12.50 0.00 32.86 3.18
558 589 5.249163 ACTTATAAGTCACCCCCTTTTACGT 59.751 40.000 12.50 0.00 32.86 3.57
559 590 2.265589 AAGTCACCCCCTTTTACGTG 57.734 50.000 0.00 0.00 0.00 4.49
560 591 0.399075 AGTCACCCCCTTTTACGTGG 59.601 55.000 0.00 0.00 0.00 4.94
561 592 0.607217 GTCACCCCCTTTTACGTGGG 60.607 60.000 0.00 0.55 44.03 4.61
562 593 4.006837 ACCCCCTTTTACGTGGGT 57.993 55.556 6.22 6.22 46.50 4.51
563 594 4.728409 CCCCCTTTTACGTGGGTC 57.272 61.111 7.83 0.00 41.82 4.46
564 595 1.001764 CCCCCTTTTACGTGGGTCC 60.002 63.158 7.83 0.00 41.82 4.46
565 596 1.001764 CCCCTTTTACGTGGGTCCC 60.002 63.158 0.00 0.00 41.82 4.46
566 597 1.762471 CCCTTTTACGTGGGTCCCA 59.238 57.895 6.47 6.47 38.65 4.37
567 598 0.330267 CCCTTTTACGTGGGTCCCAT 59.670 55.000 15.49 0.66 38.65 4.00
568 599 1.680860 CCCTTTTACGTGGGTCCCATC 60.681 57.143 15.49 7.14 38.65 3.51
569 600 1.003812 CCTTTTACGTGGGTCCCATCA 59.996 52.381 15.49 0.00 35.28 3.07
570 601 2.356741 CCTTTTACGTGGGTCCCATCAT 60.357 50.000 15.49 5.29 35.28 2.45
571 602 2.702592 TTTACGTGGGTCCCATCATC 57.297 50.000 15.49 0.00 35.28 2.92
572 603 1.874129 TTACGTGGGTCCCATCATCT 58.126 50.000 15.49 0.00 35.28 2.90
573 604 1.874129 TACGTGGGTCCCATCATCTT 58.126 50.000 15.49 0.00 35.28 2.40
574 605 0.991920 ACGTGGGTCCCATCATCTTT 59.008 50.000 15.49 0.00 35.28 2.52
575 606 2.193127 ACGTGGGTCCCATCATCTTTA 58.807 47.619 15.49 0.00 35.28 1.85
576 607 2.093128 ACGTGGGTCCCATCATCTTTAC 60.093 50.000 15.49 0.00 35.28 2.01
577 608 2.093181 CGTGGGTCCCATCATCTTTACA 60.093 50.000 15.49 0.00 35.28 2.41
578 609 3.433598 CGTGGGTCCCATCATCTTTACAT 60.434 47.826 15.49 0.00 35.28 2.29
579 610 4.202315 CGTGGGTCCCATCATCTTTACATA 60.202 45.833 15.49 0.00 35.28 2.29
580 611 5.686387 CGTGGGTCCCATCATCTTTACATAA 60.686 44.000 15.49 0.00 35.28 1.90
581 612 6.126409 GTGGGTCCCATCATCTTTACATAAA 58.874 40.000 15.49 0.00 35.28 1.40
582 613 6.605594 GTGGGTCCCATCATCTTTACATAAAA 59.394 38.462 15.49 0.00 35.28 1.52
583 614 7.123547 GTGGGTCCCATCATCTTTACATAAAAA 59.876 37.037 15.49 0.00 35.28 1.94
601 632 3.885724 AAAACAAGGTGGAAAGGTGTG 57.114 42.857 0.00 0.00 0.00 3.82
602 633 1.775385 AACAAGGTGGAAAGGTGTGG 58.225 50.000 0.00 0.00 0.00 4.17
603 634 0.629058 ACAAGGTGGAAAGGTGTGGT 59.371 50.000 0.00 0.00 0.00 4.16
604 635 1.318576 CAAGGTGGAAAGGTGTGGTC 58.681 55.000 0.00 0.00 0.00 4.02
605 636 0.923358 AAGGTGGAAAGGTGTGGTCA 59.077 50.000 0.00 0.00 0.00 4.02
606 637 0.474184 AGGTGGAAAGGTGTGGTCAG 59.526 55.000 0.00 0.00 0.00 3.51
607 638 0.537371 GGTGGAAAGGTGTGGTCAGG 60.537 60.000 0.00 0.00 0.00 3.86
608 639 0.182775 GTGGAAAGGTGTGGTCAGGT 59.817 55.000 0.00 0.00 0.00 4.00
609 640 0.182537 TGGAAAGGTGTGGTCAGGTG 59.817 55.000 0.00 0.00 0.00 4.00
610 641 0.472471 GGAAAGGTGTGGTCAGGTGA 59.528 55.000 0.00 0.00 0.00 4.02
611 642 1.594331 GAAAGGTGTGGTCAGGTGAC 58.406 55.000 1.17 1.17 44.04 3.67
612 643 1.141053 GAAAGGTGTGGTCAGGTGACT 59.859 52.381 9.90 0.00 44.20 3.41
613 644 1.213296 AAGGTGTGGTCAGGTGACTT 58.787 50.000 9.90 0.00 44.20 3.01
614 645 2.097110 AGGTGTGGTCAGGTGACTTA 57.903 50.000 9.90 0.00 44.20 2.24
615 646 2.621070 AGGTGTGGTCAGGTGACTTAT 58.379 47.619 9.90 0.00 44.20 1.73
616 647 3.786553 AGGTGTGGTCAGGTGACTTATA 58.213 45.455 9.90 0.00 44.20 0.98
617 648 4.164981 AGGTGTGGTCAGGTGACTTATAA 58.835 43.478 9.90 0.00 44.20 0.98
618 649 4.223032 AGGTGTGGTCAGGTGACTTATAAG 59.777 45.833 11.05 11.05 44.20 1.73
619 650 4.020485 GGTGTGGTCAGGTGACTTATAAGT 60.020 45.833 18.05 18.05 44.20 2.24
640 671 2.499214 GGTGACAACCAAACAGGCA 58.501 52.632 0.00 0.00 46.75 4.75
641 672 1.039856 GGTGACAACCAAACAGGCAT 58.960 50.000 0.00 0.00 46.75 4.40
642 673 1.269726 GGTGACAACCAAACAGGCATG 60.270 52.381 0.00 0.00 46.75 4.06
643 674 1.680735 GTGACAACCAAACAGGCATGA 59.319 47.619 4.84 0.00 43.14 3.07
644 675 1.680735 TGACAACCAAACAGGCATGAC 59.319 47.619 4.84 0.00 43.14 3.06
645 676 1.956477 GACAACCAAACAGGCATGACT 59.044 47.619 4.84 0.00 43.14 3.41
646 677 2.362077 GACAACCAAACAGGCATGACTT 59.638 45.455 4.84 0.00 43.14 3.01
647 678 3.561143 ACAACCAAACAGGCATGACTTA 58.439 40.909 4.84 0.00 43.14 2.24
648 679 4.151883 ACAACCAAACAGGCATGACTTAT 58.848 39.130 4.84 0.00 43.14 1.73
649 680 5.321102 ACAACCAAACAGGCATGACTTATA 58.679 37.500 4.84 0.00 43.14 0.98
650 681 5.772672 ACAACCAAACAGGCATGACTTATAA 59.227 36.000 4.84 0.00 43.14 0.98
651 682 6.071952 ACAACCAAACAGGCATGACTTATAAG 60.072 38.462 4.84 11.05 43.14 1.73
652 683 5.570320 ACCAAACAGGCATGACTTATAAGT 58.430 37.500 18.05 18.05 43.14 2.24
674 705 7.964604 AGTCACTGATTTTAAGTAACCTGAC 57.035 36.000 0.00 0.00 0.00 3.51
675 706 7.736893 AGTCACTGATTTTAAGTAACCTGACT 58.263 34.615 0.00 0.00 0.00 3.41
676 707 8.211629 AGTCACTGATTTTAAGTAACCTGACTT 58.788 33.333 0.00 0.00 42.35 3.01
677 708 9.485206 GTCACTGATTTTAAGTAACCTGACTTA 57.515 33.333 0.00 0.00 40.22 2.24
708 739 8.733458 TCAGATGACTTATTGAAATCAAACAGG 58.267 33.333 0.00 0.00 39.55 4.00
709 740 7.487189 CAGATGACTTATTGAAATCAAACAGGC 59.513 37.037 0.00 2.41 39.55 4.85
710 741 6.024552 TGACTTATTGAAATCAAACAGGCC 57.975 37.500 0.00 0.00 39.55 5.19
711 742 5.059404 ACTTATTGAAATCAAACAGGCCG 57.941 39.130 0.00 0.00 39.55 6.13
753 785 3.376935 CTCCCCGGCTGTAGCTGTG 62.377 68.421 11.44 0.16 45.66 3.66
754 786 4.473520 CCCCGGCTGTAGCTGTGG 62.474 72.222 11.44 5.92 45.66 4.17
760 792 1.269309 CGGCTGTAGCTGTGGAGATAC 60.269 57.143 0.00 0.00 40.83 2.24
780 812 3.350833 ACAGGGAATTAAAGCTGCAGAG 58.649 45.455 20.43 0.00 0.00 3.35
783 815 1.406898 GGAATTAAAGCTGCAGAGGGC 59.593 52.381 20.43 1.85 45.13 5.19
858 890 1.332686 GGGGCGATTAATGAAACCGAC 59.667 52.381 0.00 0.00 0.00 4.79
973 1005 1.764054 CGCTCTCCATCCCCTTCCT 60.764 63.158 0.00 0.00 0.00 3.36
974 1006 1.835693 GCTCTCCATCCCCTTCCTG 59.164 63.158 0.00 0.00 0.00 3.86
997 1030 1.097547 CCATTCATCCGTCTGCACCC 61.098 60.000 0.00 0.00 0.00 4.61
1003 1036 4.767255 CCGTCTGCACCCAGCCTC 62.767 72.222 0.00 0.00 44.83 4.70
1032 1065 3.494336 CGCTCAAGCAAGCCTCCG 61.494 66.667 2.50 0.00 42.21 4.63
1033 1066 2.046892 GCTCAAGCAAGCCTCCGA 60.047 61.111 0.00 0.00 41.59 4.55
1035 1068 1.449246 CTCAAGCAAGCCTCCGAGG 60.449 63.158 10.41 10.41 38.80 4.63
1036 1069 2.177594 CTCAAGCAAGCCTCCGAGGT 62.178 60.000 16.09 0.20 37.80 3.85
1037 1070 1.302832 CAAGCAAGCCTCCGAGGTT 60.303 57.895 16.09 7.18 37.80 3.50
1038 1071 1.003233 AAGCAAGCCTCCGAGGTTC 60.003 57.895 16.09 0.08 37.80 3.62
1056 1089 4.530553 AGGTTCCTCTTCTTCTTCTTCCTC 59.469 45.833 0.00 0.00 0.00 3.71
1061 1094 3.704061 CTCTTCTTCTTCTTCCTCCCGAT 59.296 47.826 0.00 0.00 0.00 4.18
1066 1099 3.503800 TCTTCTTCCTCCCGATCGATA 57.496 47.619 18.66 2.66 0.00 2.92
1073 1106 1.398739 CCTCCCGATCGATATCACTCG 59.601 57.143 18.66 14.06 39.99 4.18
1082 1115 3.660865 TCGATATCACTCGTAGCTAGCA 58.339 45.455 18.83 0.00 39.62 3.49
1100 1133 1.457346 CAGGCTACTGCTTTCCTTGG 58.543 55.000 0.00 0.00 38.01 3.61
1101 1134 0.322906 AGGCTACTGCTTTCCTTGGC 60.323 55.000 0.00 0.00 39.59 4.52
1102 1135 0.322906 GGCTACTGCTTTCCTTGGCT 60.323 55.000 0.00 0.00 39.59 4.75
1103 1136 0.807496 GCTACTGCTTTCCTTGGCTG 59.193 55.000 0.00 0.00 36.03 4.85
1138 1171 1.812922 GAGCATGGTGGAGAGCGTG 60.813 63.158 0.00 0.00 39.25 5.34
1312 1345 3.485431 CTCAACAGCTGCGAGCCG 61.485 66.667 15.27 0.00 43.77 5.52
1344 1377 1.712018 GGTACCAATTCGCTTCGCCC 61.712 60.000 7.15 0.00 0.00 6.13
1346 1379 2.879813 TACCAATTCGCTTCGCCCCC 62.880 60.000 0.00 0.00 0.00 5.40
1370 1403 4.799564 AGCTTCATCGTCTTCTTCTTCT 57.200 40.909 0.00 0.00 0.00 2.85
1422 1455 3.570926 AGCTGCTGATGTTGTTTGATG 57.429 42.857 0.00 0.00 0.00 3.07
1620 1655 2.243407 GAAGACGCTCGTGTTCTACAG 58.757 52.381 20.32 0.00 42.70 2.74
1745 1780 7.255277 GCCTCTCCAACATTCCATTCTAATTAC 60.255 40.741 0.00 0.00 0.00 1.89
1791 1831 2.659428 GGAGGGTGAATTGATTGGGAG 58.341 52.381 0.00 0.00 0.00 4.30
1923 1963 4.695231 CCGTGACGACGCCGAACT 62.695 66.667 6.54 0.00 44.68 3.01
1925 1965 2.254651 GTGACGACGCCGAACTCT 59.745 61.111 0.00 0.00 39.50 3.24
2169 2209 0.602638 CTACAGCTTGACCAACGCCA 60.603 55.000 0.00 0.00 0.00 5.69
2339 2379 2.783379 TCATGATGAGAGCCCTAGGT 57.217 50.000 8.29 0.00 0.00 3.08
2441 2481 2.438075 CCTCAGCAGGGCAAGCTC 60.438 66.667 0.00 0.00 41.14 4.09
2503 2543 0.935898 CTTGCTTCTGCCGCTATGAG 59.064 55.000 0.00 0.00 38.71 2.90
2535 2575 4.480386 GCTGCTGCTAATAATCTTGGTC 57.520 45.455 8.53 0.00 36.03 4.02
2543 2583 7.208064 TGCTAATAATCTTGGTCCTAGGTTT 57.792 36.000 9.08 0.41 0.00 3.27
2709 2752 6.935741 TGTTGTGAGTTAACTATGTTGCTT 57.064 33.333 8.42 0.00 0.00 3.91
2710 2753 6.954944 TGTTGTGAGTTAACTATGTTGCTTC 58.045 36.000 8.42 0.00 0.00 3.86
2711 2754 6.765989 TGTTGTGAGTTAACTATGTTGCTTCT 59.234 34.615 8.42 0.00 0.00 2.85
2712 2755 7.282224 TGTTGTGAGTTAACTATGTTGCTTCTT 59.718 33.333 8.42 0.00 0.00 2.52
2713 2756 7.421530 TGTGAGTTAACTATGTTGCTTCTTC 57.578 36.000 8.42 0.00 0.00 2.87
2714 2757 6.989759 TGTGAGTTAACTATGTTGCTTCTTCA 59.010 34.615 8.42 0.00 0.00 3.02
2715 2758 7.497579 TGTGAGTTAACTATGTTGCTTCTTCAA 59.502 33.333 8.42 0.00 0.00 2.69
2781 2824 3.444742 TCACTAATTCTCGGTCGCCTAAA 59.555 43.478 0.00 0.00 0.00 1.85
2782 2825 3.550678 CACTAATTCTCGGTCGCCTAAAC 59.449 47.826 0.00 0.00 0.00 2.01
2833 2876 9.886337 TGGGTAATATAAGTATAACTCAGGTGA 57.114 33.333 0.00 0.00 0.00 4.02
2843 2886 8.152023 AGTATAACTCAGGTGAAGATCCTTTT 57.848 34.615 0.00 0.00 32.37 2.27
2846 2889 3.009584 ACTCAGGTGAAGATCCTTTTCCC 59.990 47.826 0.00 0.00 32.37 3.97
2863 2912 6.926826 CCTTTTCCCAAAATGTAGTTAACCAC 59.073 38.462 0.88 0.00 0.00 4.16
2869 2918 6.866248 CCCAAAATGTAGTTAACCACATGAAC 59.134 38.462 18.47 0.00 35.59 3.18
2880 2929 9.032624 AGTTAACCACATGAACATAGTAGTAGT 57.967 33.333 0.00 0.00 0.00 2.73
2884 2933 8.998277 ACCACATGAACATAGTAGTAGTATCT 57.002 34.615 0.00 0.00 0.00 1.98
2885 2934 9.069082 ACCACATGAACATAGTAGTAGTATCTC 57.931 37.037 0.00 0.00 0.00 2.75
2897 2951 5.845391 AGTAGTATCTCAAGAAGTCTGCC 57.155 43.478 0.00 0.00 0.00 4.85
2928 2982 1.528161 GCAGCACAAACAATTCTTGGC 59.472 47.619 0.00 3.30 34.12 4.52
2950 3012 5.238650 GGCAAGTTATATATGAAGTTGGCGT 59.761 40.000 20.66 0.00 46.38 5.68
2969 3066 2.102578 GTGGAAATGAGGATGGTTGGG 58.897 52.381 0.00 0.00 0.00 4.12
2991 3088 5.771165 GGGTGTTGGTCCAAATTAAGACTTA 59.229 40.000 5.69 0.00 33.39 2.24
3035 3137 7.284489 AGACAACTTATGGTTTTGCAAACTCTA 59.716 33.333 12.39 6.72 35.74 2.43
3044 3146 6.775629 TGGTTTTGCAAACTCTATCTTTAGGT 59.224 34.615 12.39 0.00 0.00 3.08
3079 3185 3.437049 GCGTTTGTAGATGGCTCTTCTTT 59.563 43.478 0.00 0.00 32.66 2.52
3089 3195 7.150783 AGATGGCTCTTCTTTCATTGTTAAC 57.849 36.000 0.00 0.00 0.00 2.01
3090 3196 6.944862 AGATGGCTCTTCTTTCATTGTTAACT 59.055 34.615 7.22 0.00 0.00 2.24
3112 3220 0.737219 AATAAGGACCTCGGTCGTCG 59.263 55.000 11.29 0.00 45.41 5.12
3113 3221 0.393537 ATAAGGACCTCGGTCGTCGT 60.394 55.000 11.29 0.79 45.41 4.34
3114 3222 1.021390 TAAGGACCTCGGTCGTCGTC 61.021 60.000 11.29 0.00 45.41 4.20
3115 3223 2.744768 AAGGACCTCGGTCGTCGTCT 62.745 60.000 11.29 0.00 45.41 4.18
3116 3224 2.479650 GACCTCGGTCGTCGTCTG 59.520 66.667 0.00 0.00 40.32 3.51
3154 3264 6.131389 GCTGTTTTTGTTGAATCTTGATTGC 58.869 36.000 0.09 0.00 0.00 3.56
3173 3283 1.939838 GCCCTAGTCGTGTCCTTGTTG 60.940 57.143 0.00 0.00 0.00 3.33
3227 3340 2.928116 GCTGTTGATTAGGTCGTGGTAC 59.072 50.000 0.00 0.00 0.00 3.34
3228 3341 3.368116 GCTGTTGATTAGGTCGTGGTACT 60.368 47.826 0.00 0.00 0.00 2.73
3229 3342 4.174009 CTGTTGATTAGGTCGTGGTACTG 58.826 47.826 0.00 0.00 0.00 2.74
3395 3520 8.730680 GCTAGAGAGATATCTAAACCAAGAGAG 58.269 40.741 4.89 0.00 31.51 3.20
3400 3525 7.014230 AGAGATATCTAAACCAAGAGAGTGAGC 59.986 40.741 4.89 0.00 0.00 4.26
3409 3534 0.612229 AGAGAGTGAGCCATGGTGTG 59.388 55.000 14.67 0.00 0.00 3.82
3410 3535 0.322975 GAGAGTGAGCCATGGTGTGT 59.677 55.000 14.67 0.00 0.00 3.72
3411 3536 0.035881 AGAGTGAGCCATGGTGTGTG 59.964 55.000 14.67 0.00 0.00 3.82
3412 3537 0.250467 GAGTGAGCCATGGTGTGTGT 60.250 55.000 14.67 0.00 0.00 3.72
3413 3538 0.535780 AGTGAGCCATGGTGTGTGTG 60.536 55.000 14.67 0.00 0.00 3.82
3414 3539 0.819259 GTGAGCCATGGTGTGTGTGT 60.819 55.000 14.67 0.00 0.00 3.72
3415 3540 0.818852 TGAGCCATGGTGTGTGTGTG 60.819 55.000 14.67 0.00 0.00 3.82
3416 3541 0.819259 GAGCCATGGTGTGTGTGTGT 60.819 55.000 14.67 0.00 0.00 3.72
3417 3542 1.102809 AGCCATGGTGTGTGTGTGTG 61.103 55.000 14.67 0.00 0.00 3.82
3418 3543 1.383456 GCCATGGTGTGTGTGTGTGT 61.383 55.000 14.67 0.00 0.00 3.72
3419 3544 0.381445 CCATGGTGTGTGTGTGTGTG 59.619 55.000 2.57 0.00 0.00 3.82
3420 3545 1.093972 CATGGTGTGTGTGTGTGTGT 58.906 50.000 0.00 0.00 0.00 3.72
3421 3546 2.284190 CATGGTGTGTGTGTGTGTGTA 58.716 47.619 0.00 0.00 0.00 2.90
3422 3547 2.017138 TGGTGTGTGTGTGTGTGTAG 57.983 50.000 0.00 0.00 0.00 2.74
3423 3548 1.295792 GGTGTGTGTGTGTGTGTAGG 58.704 55.000 0.00 0.00 0.00 3.18
3424 3549 1.406341 GGTGTGTGTGTGTGTGTAGGT 60.406 52.381 0.00 0.00 0.00 3.08
3425 3550 1.663643 GTGTGTGTGTGTGTGTAGGTG 59.336 52.381 0.00 0.00 0.00 4.00
3426 3551 0.655733 GTGTGTGTGTGTGTAGGTGC 59.344 55.000 0.00 0.00 0.00 5.01
3427 3552 0.808060 TGTGTGTGTGTGTAGGTGCG 60.808 55.000 0.00 0.00 0.00 5.34
3428 3553 1.885388 TGTGTGTGTGTAGGTGCGC 60.885 57.895 0.00 0.00 0.00 6.09
3429 3554 1.594293 GTGTGTGTGTAGGTGCGCT 60.594 57.895 9.73 0.00 0.00 5.92
3430 3555 0.319211 GTGTGTGTGTAGGTGCGCTA 60.319 55.000 9.73 0.00 0.00 4.26
3431 3556 0.389757 TGTGTGTGTAGGTGCGCTAA 59.610 50.000 9.73 0.00 0.00 3.09
3432 3557 1.202545 TGTGTGTGTAGGTGCGCTAAA 60.203 47.619 9.73 0.00 0.00 1.85
3433 3558 1.459592 GTGTGTGTAGGTGCGCTAAAG 59.540 52.381 9.73 0.00 0.00 1.85
3434 3559 1.069513 TGTGTGTAGGTGCGCTAAAGT 59.930 47.619 9.73 0.00 0.00 2.66
3435 3560 1.459592 GTGTGTAGGTGCGCTAAAGTG 59.540 52.381 9.73 0.00 0.00 3.16
3436 3561 1.341852 TGTGTAGGTGCGCTAAAGTGA 59.658 47.619 9.73 0.00 0.00 3.41
3437 3562 1.993370 GTGTAGGTGCGCTAAAGTGAG 59.007 52.381 9.73 0.00 0.00 3.51
3438 3563 1.000145 GTAGGTGCGCTAAAGTGAGC 59.000 55.000 9.73 0.00 39.20 4.26
3439 3564 0.108329 TAGGTGCGCTAAAGTGAGCC 60.108 55.000 9.73 0.00 39.43 4.70
3440 3565 2.399356 GGTGCGCTAAAGTGAGCCC 61.399 63.158 9.73 0.00 39.43 5.19
3441 3566 2.434185 TGCGCTAAAGTGAGCCCG 60.434 61.111 9.73 0.00 39.43 6.13
3442 3567 2.125673 GCGCTAAAGTGAGCCCGA 60.126 61.111 0.00 0.00 39.43 5.14
3443 3568 2.167861 GCGCTAAAGTGAGCCCGAG 61.168 63.158 0.00 0.00 39.43 4.63
3444 3569 2.167861 CGCTAAAGTGAGCCCGAGC 61.168 63.158 0.00 0.00 39.43 5.03
3445 3570 2.167861 GCTAAAGTGAGCCCGAGCG 61.168 63.158 0.00 0.00 46.67 5.03
3446 3571 2.125673 TAAAGTGAGCCCGAGCGC 60.126 61.111 0.00 0.00 46.67 5.92
3462 3587 2.721129 GCGCACTGTGCTTATTCTAC 57.279 50.000 28.04 5.85 42.25 2.59
3463 3588 1.005975 GCGCACTGTGCTTATTCTACG 60.006 52.381 28.04 11.88 42.25 3.51
3464 3589 1.005975 CGCACTGTGCTTATTCTACGC 60.006 52.381 28.04 0.00 42.25 4.42
3465 3590 2.271800 GCACTGTGCTTATTCTACGCT 58.728 47.619 24.68 0.00 40.96 5.07
3466 3591 2.282820 GCACTGTGCTTATTCTACGCTC 59.717 50.000 24.68 0.00 40.96 5.03
3467 3592 2.860735 CACTGTGCTTATTCTACGCTCC 59.139 50.000 0.00 0.00 0.00 4.70
3468 3593 2.120232 CTGTGCTTATTCTACGCTCCG 58.880 52.381 0.00 0.00 0.00 4.63
3469 3594 1.746787 TGTGCTTATTCTACGCTCCGA 59.253 47.619 0.00 0.00 0.00 4.55
3470 3595 2.117910 GTGCTTATTCTACGCTCCGAC 58.882 52.381 0.00 0.00 0.00 4.79
3471 3596 1.066605 TGCTTATTCTACGCTCCGACC 59.933 52.381 0.00 0.00 0.00 4.79
3472 3597 1.602416 GCTTATTCTACGCTCCGACCC 60.602 57.143 0.00 0.00 0.00 4.46
3473 3598 1.679680 CTTATTCTACGCTCCGACCCA 59.320 52.381 0.00 0.00 0.00 4.51
3474 3599 1.991121 TATTCTACGCTCCGACCCAT 58.009 50.000 0.00 0.00 0.00 4.00
3475 3600 0.389391 ATTCTACGCTCCGACCCATG 59.611 55.000 0.00 0.00 0.00 3.66
3476 3601 1.672854 TTCTACGCTCCGACCCATGG 61.673 60.000 4.14 4.14 0.00 3.66
3477 3602 2.043752 TACGCTCCGACCCATGGA 60.044 61.111 15.22 0.00 0.00 3.41
3481 3606 4.899239 CTCCGACCCATGGAGCGC 62.899 72.222 15.22 0.00 45.99 5.92
3488 3613 4.415150 CCATGGAGCGCACCCTGT 62.415 66.667 23.14 7.84 0.00 4.00
3489 3614 2.360350 CATGGAGCGCACCCTGTT 60.360 61.111 21.62 0.64 0.00 3.16
3490 3615 1.973281 CATGGAGCGCACCCTGTTT 60.973 57.895 21.62 0.00 0.00 2.83
3491 3616 1.973281 ATGGAGCGCACCCTGTTTG 60.973 57.895 21.62 0.00 0.00 2.93
3492 3617 4.043200 GGAGCGCACCCTGTTTGC 62.043 66.667 13.51 0.00 36.57 3.68
3493 3618 2.980233 GAGCGCACCCTGTTTGCT 60.980 61.111 11.47 0.00 37.87 3.91
3494 3619 1.671054 GAGCGCACCCTGTTTGCTA 60.671 57.895 11.47 0.00 37.87 3.49
3495 3620 1.228124 AGCGCACCCTGTTTGCTAA 60.228 52.632 11.47 0.00 37.87 3.09
3496 3621 0.609131 AGCGCACCCTGTTTGCTAAT 60.609 50.000 11.47 0.00 37.87 1.73
3497 3622 0.179163 GCGCACCCTGTTTGCTAATC 60.179 55.000 0.30 0.00 37.87 1.75
3498 3623 0.096976 CGCACCCTGTTTGCTAATCG 59.903 55.000 0.00 0.00 37.87 3.34
3499 3624 0.451783 GCACCCTGTTTGCTAATCGG 59.548 55.000 0.00 0.00 37.00 4.18
3500 3625 1.821216 CACCCTGTTTGCTAATCGGT 58.179 50.000 0.00 0.00 0.00 4.69
3501 3626 2.159382 CACCCTGTTTGCTAATCGGTT 58.841 47.619 0.00 0.00 0.00 4.44
3502 3627 3.340034 CACCCTGTTTGCTAATCGGTTA 58.660 45.455 0.00 0.00 0.00 2.85
3503 3628 3.126343 CACCCTGTTTGCTAATCGGTTAC 59.874 47.826 0.00 0.00 0.00 2.50
3504 3629 3.244630 ACCCTGTTTGCTAATCGGTTACA 60.245 43.478 0.00 0.00 0.00 2.41
3505 3630 3.945285 CCCTGTTTGCTAATCGGTTACAT 59.055 43.478 0.00 0.00 0.00 2.29
3506 3631 4.035208 CCCTGTTTGCTAATCGGTTACATC 59.965 45.833 0.00 0.00 0.00 3.06
3507 3632 4.634004 CCTGTTTGCTAATCGGTTACATCA 59.366 41.667 0.00 0.00 0.00 3.07
3508 3633 5.296780 CCTGTTTGCTAATCGGTTACATCAT 59.703 40.000 0.00 0.00 0.00 2.45
3509 3634 6.183360 CCTGTTTGCTAATCGGTTACATCATT 60.183 38.462 0.00 0.00 0.00 2.57
3510 3635 6.781138 TGTTTGCTAATCGGTTACATCATTC 58.219 36.000 0.00 0.00 0.00 2.67
3511 3636 6.597672 TGTTTGCTAATCGGTTACATCATTCT 59.402 34.615 0.00 0.00 0.00 2.40
3512 3637 7.120579 TGTTTGCTAATCGGTTACATCATTCTT 59.879 33.333 0.00 0.00 0.00 2.52
3513 3638 7.624360 TTGCTAATCGGTTACATCATTCTTT 57.376 32.000 0.00 0.00 0.00 2.52
3514 3639 8.725405 TTGCTAATCGGTTACATCATTCTTTA 57.275 30.769 0.00 0.00 0.00 1.85
3515 3640 8.725405 TGCTAATCGGTTACATCATTCTTTAA 57.275 30.769 0.00 0.00 0.00 1.52
3516 3641 9.337396 TGCTAATCGGTTACATCATTCTTTAAT 57.663 29.630 0.00 0.00 0.00 1.40
3521 3646 7.847487 TCGGTTACATCATTCTTTAATTAGCG 58.153 34.615 0.00 0.00 0.00 4.26
3522 3647 6.573725 CGGTTACATCATTCTTTAATTAGCGC 59.426 38.462 0.00 0.00 0.00 5.92
3523 3648 7.414436 GGTTACATCATTCTTTAATTAGCGCA 58.586 34.615 11.47 0.00 0.00 6.09
3524 3649 7.587757 GGTTACATCATTCTTTAATTAGCGCAG 59.412 37.037 11.47 0.00 0.00 5.18
3537 3662 4.123009 CGCAGCCACATGCATGCA 62.123 61.111 26.53 25.04 46.87 3.96
3538 3663 2.499205 GCAGCCACATGCATGCAT 59.501 55.556 27.46 27.46 45.77 3.96
3539 3664 1.737201 GCAGCCACATGCATGCATA 59.263 52.632 31.73 6.51 45.77 3.14
3540 3665 0.317160 GCAGCCACATGCATGCATAT 59.683 50.000 31.73 20.24 45.77 1.78
3541 3666 1.542472 GCAGCCACATGCATGCATATA 59.458 47.619 31.73 5.22 45.77 0.86
3542 3667 2.415491 GCAGCCACATGCATGCATATAG 60.415 50.000 31.73 21.81 45.77 1.31
3543 3668 2.817844 CAGCCACATGCATGCATATAGT 59.182 45.455 31.73 22.47 44.83 2.12
3544 3669 4.004982 CAGCCACATGCATGCATATAGTA 58.995 43.478 31.73 3.08 44.83 1.82
3545 3670 4.456566 CAGCCACATGCATGCATATAGTAA 59.543 41.667 31.73 2.23 44.83 2.24
3546 3671 5.048573 CAGCCACATGCATGCATATAGTAAA 60.049 40.000 31.73 1.39 44.83 2.01
3547 3672 5.713389 AGCCACATGCATGCATATAGTAAAT 59.287 36.000 31.73 12.01 44.83 1.40
3548 3673 6.885918 AGCCACATGCATGCATATAGTAAATA 59.114 34.615 31.73 0.00 44.83 1.40
3549 3674 7.394077 AGCCACATGCATGCATATAGTAAATAA 59.606 33.333 31.73 0.00 44.83 1.40
3550 3675 8.192774 GCCACATGCATGCATATAGTAAATAAT 58.807 33.333 31.73 4.16 40.77 1.28
3576 3701 9.804758 TTTAATTTATTTACTATGTTTGGCCCG 57.195 29.630 0.00 0.00 0.00 6.13
3577 3702 4.904253 TTATTTACTATGTTTGGCCCGC 57.096 40.909 0.00 0.00 0.00 6.13
3578 3703 1.088306 TTTACTATGTTTGGCCCGCG 58.912 50.000 0.00 0.00 0.00 6.46
3579 3704 0.036199 TTACTATGTTTGGCCCGCGT 60.036 50.000 4.92 0.00 0.00 6.01
3580 3705 0.036199 TACTATGTTTGGCCCGCGTT 60.036 50.000 4.92 0.00 0.00 4.84
3581 3706 0.891904 ACTATGTTTGGCCCGCGTTT 60.892 50.000 4.92 0.00 0.00 3.60
3582 3707 0.242555 CTATGTTTGGCCCGCGTTTT 59.757 50.000 4.92 0.00 0.00 2.43
3583 3708 1.469308 CTATGTTTGGCCCGCGTTTTA 59.531 47.619 4.92 0.00 0.00 1.52
3584 3709 0.038983 ATGTTTGGCCCGCGTTTTAC 60.039 50.000 4.92 0.00 0.00 2.01
3585 3710 1.102222 TGTTTGGCCCGCGTTTTACT 61.102 50.000 4.92 0.00 0.00 2.24
3586 3711 0.873721 GTTTGGCCCGCGTTTTACTA 59.126 50.000 4.92 0.00 0.00 1.82
3587 3712 1.135888 GTTTGGCCCGCGTTTTACTAG 60.136 52.381 4.92 0.00 0.00 2.57
3588 3713 1.300266 TTGGCCCGCGTTTTACTAGC 61.300 55.000 4.92 0.00 0.00 3.42
3589 3714 1.742510 GGCCCGCGTTTTACTAGCA 60.743 57.895 4.92 0.00 0.00 3.49
3590 3715 1.093496 GGCCCGCGTTTTACTAGCAT 61.093 55.000 4.92 0.00 0.00 3.79
3591 3716 0.027586 GCCCGCGTTTTACTAGCATG 59.972 55.000 4.92 0.00 0.00 4.06
3592 3717 0.027586 CCCGCGTTTTACTAGCATGC 59.972 55.000 10.51 10.51 0.00 4.06
3593 3718 0.315059 CCGCGTTTTACTAGCATGCG 60.315 55.000 13.01 0.84 43.95 4.73
3594 3719 0.643310 CGCGTTTTACTAGCATGCGA 59.357 50.000 13.01 6.11 46.60 5.10
3595 3720 1.331161 CGCGTTTTACTAGCATGCGAG 60.331 52.381 24.21 24.21 46.60 5.03
3596 3721 1.659098 GCGTTTTACTAGCATGCGAGT 59.341 47.619 31.70 31.70 36.03 4.18
3597 3722 2.285084 GCGTTTTACTAGCATGCGAGTC 60.285 50.000 32.75 19.16 34.01 3.36
3598 3723 2.035674 CGTTTTACTAGCATGCGAGTCG 60.036 50.000 32.75 25.48 34.01 4.18
3599 3724 3.176708 GTTTTACTAGCATGCGAGTCGA 58.823 45.455 32.75 21.16 34.01 4.20
3600 3725 2.757686 TTACTAGCATGCGAGTCGAG 57.242 50.000 32.75 16.50 34.01 4.04
3601 3726 0.945099 TACTAGCATGCGAGTCGAGG 59.055 55.000 32.75 8.70 34.01 4.63
3602 3727 0.748367 ACTAGCATGCGAGTCGAGGA 60.748 55.000 25.57 0.00 0.00 3.71
3603 3728 0.595588 CTAGCATGCGAGTCGAGGAT 59.404 55.000 18.61 5.61 0.00 3.24
3604 3729 0.312102 TAGCATGCGAGTCGAGGATG 59.688 55.000 18.61 14.89 39.88 3.51
3605 3730 3.622756 CATGCGAGTCGAGGATGC 58.377 61.111 18.61 0.00 31.12 3.91
3606 3731 2.026734 ATGCGAGTCGAGGATGCG 59.973 61.111 18.61 0.00 0.00 4.73
3607 3732 2.481471 ATGCGAGTCGAGGATGCGA 61.481 57.895 18.61 0.00 38.07 5.10
3608 3733 2.352915 GCGAGTCGAGGATGCGAG 60.353 66.667 18.61 0.00 41.49 5.03
3609 3734 2.824901 GCGAGTCGAGGATGCGAGA 61.825 63.158 18.61 0.00 41.49 4.04
3610 3735 1.010574 CGAGTCGAGGATGCGAGAC 60.011 63.158 6.73 6.94 41.49 3.36
3611 3736 1.706287 CGAGTCGAGGATGCGAGACA 61.706 60.000 6.73 0.00 41.49 3.41
3612 3737 0.028770 GAGTCGAGGATGCGAGACAG 59.971 60.000 14.93 0.00 41.49 3.51
3613 3738 0.393132 AGTCGAGGATGCGAGACAGA 60.393 55.000 14.93 0.00 41.49 3.41
3614 3739 0.248296 GTCGAGGATGCGAGACAGAC 60.248 60.000 9.47 0.00 41.49 3.51
3615 3740 1.297967 CGAGGATGCGAGACAGACG 60.298 63.158 0.00 0.00 0.00 4.18
3616 3741 1.706287 CGAGGATGCGAGACAGACGA 61.706 60.000 0.00 0.00 0.00 4.20
3617 3742 0.248296 GAGGATGCGAGACAGACGAC 60.248 60.000 0.00 0.00 0.00 4.34
3618 3743 0.960861 AGGATGCGAGACAGACGACA 60.961 55.000 0.00 0.00 0.00 4.35
3619 3744 0.101399 GGATGCGAGACAGACGACAT 59.899 55.000 0.00 0.00 33.28 3.06
3620 3745 1.469940 GGATGCGAGACAGACGACATT 60.470 52.381 0.00 0.00 31.83 2.71
3621 3746 1.585668 GATGCGAGACAGACGACATTG 59.414 52.381 0.00 0.00 31.83 2.82
3622 3747 1.008875 TGCGAGACAGACGACATTGC 61.009 55.000 0.00 0.00 0.00 3.56
3623 3748 0.734253 GCGAGACAGACGACATTGCT 60.734 55.000 0.00 0.00 0.00 3.91
3624 3749 1.702886 CGAGACAGACGACATTGCTT 58.297 50.000 0.00 0.00 0.00 3.91
3625 3750 1.388093 CGAGACAGACGACATTGCTTG 59.612 52.381 0.00 0.00 0.00 4.01
3626 3751 2.408050 GAGACAGACGACATTGCTTGT 58.592 47.619 0.00 0.00 42.79 3.16
3627 3752 2.802816 GAGACAGACGACATTGCTTGTT 59.197 45.455 0.00 0.00 39.18 2.83
3628 3753 2.545526 AGACAGACGACATTGCTTGTTG 59.454 45.455 0.00 6.18 44.24 3.33
3629 3754 2.543848 GACAGACGACATTGCTTGTTGA 59.456 45.455 12.74 0.00 41.64 3.18
3630 3755 2.287915 ACAGACGACATTGCTTGTTGAC 59.712 45.455 12.74 7.86 41.64 3.18
3631 3756 1.873591 AGACGACATTGCTTGTTGACC 59.126 47.619 12.74 5.94 41.64 4.02
3632 3757 0.586319 ACGACATTGCTTGTTGACCG 59.414 50.000 12.74 6.25 41.64 4.79
3633 3758 0.586319 CGACATTGCTTGTTGACCGT 59.414 50.000 2.43 0.00 41.64 4.83
3634 3759 1.795872 CGACATTGCTTGTTGACCGTA 59.204 47.619 2.43 0.00 41.64 4.02
3635 3760 2.222213 CGACATTGCTTGTTGACCGTAA 59.778 45.455 2.43 0.00 41.64 3.18
3636 3761 3.120338 CGACATTGCTTGTTGACCGTAAT 60.120 43.478 2.43 0.00 41.64 1.89
3637 3762 4.612712 CGACATTGCTTGTTGACCGTAATT 60.613 41.667 2.43 0.00 41.64 1.40
3638 3763 4.794169 ACATTGCTTGTTGACCGTAATTC 58.206 39.130 0.00 0.00 33.74 2.17
3639 3764 4.277174 ACATTGCTTGTTGACCGTAATTCA 59.723 37.500 0.00 0.00 33.74 2.57
3640 3765 5.048083 ACATTGCTTGTTGACCGTAATTCAT 60.048 36.000 0.00 0.00 33.74 2.57
3641 3766 5.446143 TTGCTTGTTGACCGTAATTCATT 57.554 34.783 0.00 0.00 0.00 2.57
3642 3767 5.446143 TGCTTGTTGACCGTAATTCATTT 57.554 34.783 0.00 0.00 0.00 2.32
3643 3768 6.561737 TGCTTGTTGACCGTAATTCATTTA 57.438 33.333 0.00 0.00 0.00 1.40
3644 3769 6.971602 TGCTTGTTGACCGTAATTCATTTAA 58.028 32.000 0.00 0.00 0.00 1.52
3645 3770 7.598278 TGCTTGTTGACCGTAATTCATTTAAT 58.402 30.769 0.00 0.00 0.00 1.40
3646 3771 7.753132 TGCTTGTTGACCGTAATTCATTTAATC 59.247 33.333 0.00 0.00 0.00 1.75
3647 3772 7.220108 GCTTGTTGACCGTAATTCATTTAATCC 59.780 37.037 0.00 0.00 0.00 3.01
3648 3773 7.931578 TGTTGACCGTAATTCATTTAATCCT 57.068 32.000 0.00 0.00 0.00 3.24
3649 3774 7.757526 TGTTGACCGTAATTCATTTAATCCTG 58.242 34.615 0.00 0.00 0.00 3.86
3650 3775 7.392113 TGTTGACCGTAATTCATTTAATCCTGT 59.608 33.333 0.00 0.00 0.00 4.00
3651 3776 7.931578 TGACCGTAATTCATTTAATCCTGTT 57.068 32.000 0.00 0.00 0.00 3.16
3652 3777 9.451002 TTGACCGTAATTCATTTAATCCTGTTA 57.549 29.630 0.00 0.00 0.00 2.41
3653 3778 8.885722 TGACCGTAATTCATTTAATCCTGTTAC 58.114 33.333 0.00 0.00 0.00 2.50
3654 3779 8.217131 ACCGTAATTCATTTAATCCTGTTACC 57.783 34.615 0.00 0.00 0.00 2.85
3655 3780 7.830201 ACCGTAATTCATTTAATCCTGTTACCA 59.170 33.333 0.00 0.00 0.00 3.25
3656 3781 8.846211 CCGTAATTCATTTAATCCTGTTACCAT 58.154 33.333 0.00 0.00 0.00 3.55
3689 3814 2.791347 TTTTTACTAGCATGGCGGGA 57.209 45.000 0.00 0.00 0.00 5.14
3690 3815 3.290948 TTTTTACTAGCATGGCGGGAT 57.709 42.857 0.00 0.00 0.00 3.85
3691 3816 2.543777 TTTACTAGCATGGCGGGATC 57.456 50.000 0.00 0.00 0.00 3.36
3692 3817 1.419381 TTACTAGCATGGCGGGATCA 58.581 50.000 0.00 0.00 0.00 2.92
3693 3818 0.969149 TACTAGCATGGCGGGATCAG 59.031 55.000 0.00 0.00 0.00 2.90
3694 3819 1.050988 ACTAGCATGGCGGGATCAGT 61.051 55.000 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 7.795431 TTCGATTTGTTAATTGTTGATGAGC 57.205 32.000 0.00 0.00 0.00 4.26
79 80 6.509418 AATTTCGCGGCATATATGGTAAAT 57.491 33.333 14.51 0.00 0.00 1.40
84 85 4.158384 GTGAAATTTCGCGGCATATATGG 58.842 43.478 15.48 0.00 0.00 2.74
94 95 6.344468 GCTCAATGATAATGTGAAATTTCGCG 60.344 38.462 22.97 0.00 40.46 5.87
155 157 5.991606 GCATGAGAAACTAGGTATGCATGTA 59.008 40.000 10.16 0.00 40.30 2.29
156 158 4.818546 GCATGAGAAACTAGGTATGCATGT 59.181 41.667 10.16 0.00 40.30 3.21
171 175 4.591929 TCTTTGATGACCATGCATGAGAA 58.408 39.130 28.31 12.49 0.00 2.87
226 242 5.421056 CCTATGCCCGGTTTCAGTATATAGA 59.579 44.000 0.00 0.00 0.00 1.98
244 267 7.993758 ACTATTCCCTTTACTTTTCTCCTATGC 59.006 37.037 0.00 0.00 0.00 3.14
274 300 6.980978 TCTCTCGCCTAGATATTTTGACAAAG 59.019 38.462 0.10 0.00 32.41 2.77
301 327 3.425162 AATCCCTCAAACCACAGACTC 57.575 47.619 0.00 0.00 0.00 3.36
310 336 6.183360 CGGAGAAAGATACAAATCCCTCAAAC 60.183 42.308 0.00 0.00 31.98 2.93
349 375 3.070748 GGCCACTTGACTTTCTTCTCTC 58.929 50.000 0.00 0.00 0.00 3.20
376 407 2.032681 GACGGCAGGAGGCTTGTT 59.967 61.111 0.00 0.00 44.01 2.83
387 418 1.053424 AGGACCTAAAACTGACGGCA 58.947 50.000 0.00 0.00 0.00 5.69
398 429 7.562088 ACTTATTTGAAACCAAACAGGACCTAA 59.438 33.333 0.00 0.00 41.22 2.69
399 430 7.064229 ACTTATTTGAAACCAAACAGGACCTA 58.936 34.615 0.00 0.00 41.22 3.08
400 431 5.897250 ACTTATTTGAAACCAAACAGGACCT 59.103 36.000 0.00 0.00 41.22 3.85
401 432 6.156748 ACTTATTTGAAACCAAACAGGACC 57.843 37.500 0.00 0.00 41.22 4.46
402 433 6.695713 GTGACTTATTTGAAACCAAACAGGAC 59.304 38.462 0.00 0.00 41.22 3.85
403 434 6.183360 GGTGACTTATTTGAAACCAAACAGGA 60.183 38.462 0.00 0.00 41.22 3.86
404 435 5.983118 GGTGACTTATTTGAAACCAAACAGG 59.017 40.000 0.00 0.00 45.67 4.00
405 436 6.568869 TGGTGACTTATTTGAAACCAAACAG 58.431 36.000 0.00 0.00 36.48 3.16
406 437 6.531503 TGGTGACTTATTTGAAACCAAACA 57.468 33.333 0.00 0.00 36.48 2.83
407 438 7.039270 AGTTGGTGACTTATTTGAAACCAAAC 58.961 34.615 6.65 2.75 46.21 2.93
408 439 7.176589 AGTTGGTGACTTATTTGAAACCAAA 57.823 32.000 6.65 0.00 46.21 3.28
409 440 6.783708 AGTTGGTGACTTATTTGAAACCAA 57.216 33.333 1.07 1.07 43.50 3.67
410 441 6.783708 AAGTTGGTGACTTATTTGAAACCA 57.216 33.333 0.00 0.00 46.61 3.67
422 453 8.617290 ATTTTTCGACTTATAAGTTGGTGACT 57.383 30.769 25.99 10.93 39.88 3.41
449 480 9.191995 CCGTTTAGCAAAATAAGTCATTTTTCT 57.808 29.630 0.00 1.43 42.93 2.52
450 481 9.187455 TCCGTTTAGCAAAATAAGTCATTTTTC 57.813 29.630 0.00 0.00 42.93 2.29
451 482 8.974408 GTCCGTTTAGCAAAATAAGTCATTTTT 58.026 29.630 0.00 0.00 42.93 1.94
452 483 7.597369 GGTCCGTTTAGCAAAATAAGTCATTTT 59.403 33.333 0.00 0.00 45.72 1.82
453 484 7.088272 GGTCCGTTTAGCAAAATAAGTCATTT 58.912 34.615 0.00 0.00 38.54 2.32
454 485 6.349860 GGGTCCGTTTAGCAAAATAAGTCATT 60.350 38.462 0.00 0.00 0.00 2.57
455 486 5.124936 GGGTCCGTTTAGCAAAATAAGTCAT 59.875 40.000 0.00 0.00 0.00 3.06
456 487 4.456566 GGGTCCGTTTAGCAAAATAAGTCA 59.543 41.667 0.00 0.00 0.00 3.41
457 488 4.456566 TGGGTCCGTTTAGCAAAATAAGTC 59.543 41.667 0.00 0.00 0.00 3.01
458 489 4.400120 TGGGTCCGTTTAGCAAAATAAGT 58.600 39.130 0.00 0.00 0.00 2.24
459 490 5.379732 TTGGGTCCGTTTAGCAAAATAAG 57.620 39.130 0.00 0.00 0.00 1.73
460 491 5.786264 TTTGGGTCCGTTTAGCAAAATAA 57.214 34.783 0.00 0.00 0.00 1.40
461 492 5.986501 ATTTGGGTCCGTTTAGCAAAATA 57.013 34.783 0.00 0.00 30.54 1.40
462 493 4.882842 ATTTGGGTCCGTTTAGCAAAAT 57.117 36.364 0.00 0.00 0.00 1.82
463 494 4.674281 AATTTGGGTCCGTTTAGCAAAA 57.326 36.364 0.00 0.00 0.00 2.44
464 495 5.986501 ATAATTTGGGTCCGTTTAGCAAA 57.013 34.783 0.00 0.00 0.00 3.68
465 496 6.660094 ACTTATAATTTGGGTCCGTTTAGCAA 59.340 34.615 0.00 0.00 0.00 3.91
466 497 6.181908 ACTTATAATTTGGGTCCGTTTAGCA 58.818 36.000 0.00 0.00 0.00 3.49
467 498 6.316890 TGACTTATAATTTGGGTCCGTTTAGC 59.683 38.462 0.00 0.00 0.00 3.09
468 499 7.201670 GGTGACTTATAATTTGGGTCCGTTTAG 60.202 40.741 0.00 0.00 0.00 1.85
469 500 6.598850 GGTGACTTATAATTTGGGTCCGTTTA 59.401 38.462 0.00 0.00 0.00 2.01
470 501 5.416639 GGTGACTTATAATTTGGGTCCGTTT 59.583 40.000 0.00 0.00 0.00 3.60
471 502 4.945543 GGTGACTTATAATTTGGGTCCGTT 59.054 41.667 0.00 0.00 0.00 4.44
472 503 4.520179 GGTGACTTATAATTTGGGTCCGT 58.480 43.478 0.00 0.00 0.00 4.69
473 504 3.881089 GGGTGACTTATAATTTGGGTCCG 59.119 47.826 0.00 0.00 0.00 4.79
474 505 4.212716 GGGGTGACTTATAATTTGGGTCC 58.787 47.826 0.00 0.00 0.00 4.46
475 506 4.862371 TGGGGTGACTTATAATTTGGGTC 58.138 43.478 0.00 0.00 0.00 4.46
476 507 4.957606 TGGGGTGACTTATAATTTGGGT 57.042 40.909 0.00 0.00 0.00 4.51
477 508 5.269189 AGTTGGGGTGACTTATAATTTGGG 58.731 41.667 0.00 0.00 0.00 4.12
478 509 6.850752 AAGTTGGGGTGACTTATAATTTGG 57.149 37.500 0.00 0.00 35.68 3.28
484 515 8.612486 TGACTTATAAGTTGGGGTGACTTATA 57.388 34.615 18.96 10.90 44.36 0.98
485 516 7.504926 TGACTTATAAGTTGGGGTGACTTAT 57.495 36.000 18.96 12.48 46.52 1.73
486 517 6.938698 TGACTTATAAGTTGGGGTGACTTA 57.061 37.500 18.96 0.00 42.07 2.24
487 518 5.836024 TGACTTATAAGTTGGGGTGACTT 57.164 39.130 18.96 0.00 39.88 3.01
488 519 7.504926 TTATGACTTATAAGTTGGGGTGACT 57.495 36.000 18.96 0.00 39.88 3.41
489 520 7.787725 CTTATGACTTATAAGTTGGGGTGAC 57.212 40.000 18.96 4.87 42.11 3.67
500 531 6.354130 GGGTGGAGCAACTTATGACTTATAA 58.646 40.000 0.00 0.00 0.00 0.98
501 532 5.163237 GGGGTGGAGCAACTTATGACTTATA 60.163 44.000 0.00 0.00 0.00 0.98
502 533 4.385310 GGGGTGGAGCAACTTATGACTTAT 60.385 45.833 0.00 0.00 0.00 1.73
503 534 3.054655 GGGGTGGAGCAACTTATGACTTA 60.055 47.826 0.00 0.00 0.00 2.24
504 535 2.290960 GGGGTGGAGCAACTTATGACTT 60.291 50.000 0.00 0.00 0.00 3.01
505 536 1.282157 GGGGTGGAGCAACTTATGACT 59.718 52.381 0.00 0.00 0.00 3.41
506 537 1.004277 TGGGGTGGAGCAACTTATGAC 59.996 52.381 0.00 0.00 0.00 3.06
507 538 1.367346 TGGGGTGGAGCAACTTATGA 58.633 50.000 0.00 0.00 0.00 2.15
508 539 1.818674 GTTGGGGTGGAGCAACTTATG 59.181 52.381 0.00 0.00 0.00 1.90
509 540 1.710809 AGTTGGGGTGGAGCAACTTAT 59.289 47.619 0.00 0.00 34.63 1.73
510 541 1.145571 AGTTGGGGTGGAGCAACTTA 58.854 50.000 0.00 0.00 34.63 2.24
511 542 0.261696 AAGTTGGGGTGGAGCAACTT 59.738 50.000 0.00 0.00 41.36 2.66
512 543 1.145571 TAAGTTGGGGTGGAGCAACT 58.854 50.000 0.00 0.00 39.27 3.16
513 544 2.215942 ATAAGTTGGGGTGGAGCAAC 57.784 50.000 0.00 0.00 0.00 4.17
514 545 3.332485 AGTTATAAGTTGGGGTGGAGCAA 59.668 43.478 0.00 0.00 0.00 3.91
515 546 2.916934 AGTTATAAGTTGGGGTGGAGCA 59.083 45.455 0.00 0.00 0.00 4.26
516 547 3.646736 AGTTATAAGTTGGGGTGGAGC 57.353 47.619 0.00 0.00 0.00 4.70
517 548 8.904099 CTTATAAGTTATAAGTTGGGGTGGAG 57.096 38.462 25.28 5.38 41.58 3.86
531 562 7.989170 CGTAAAAGGGGGTGACTTATAAGTTAT 59.011 37.037 18.96 0.17 39.88 1.89
532 563 7.038373 ACGTAAAAGGGGGTGACTTATAAGTTA 60.038 37.037 18.96 12.54 39.88 2.24
533 564 6.175471 CGTAAAAGGGGGTGACTTATAAGTT 58.825 40.000 18.96 3.63 39.88 2.66
534 565 5.249163 ACGTAAAAGGGGGTGACTTATAAGT 59.751 40.000 18.05 18.05 43.16 2.24
535 566 5.583457 CACGTAAAAGGGGGTGACTTATAAG 59.417 44.000 11.05 11.05 32.23 1.73
536 567 5.490159 CACGTAAAAGGGGGTGACTTATAA 58.510 41.667 0.00 0.00 32.23 0.98
537 568 4.080975 CCACGTAAAAGGGGGTGACTTATA 60.081 45.833 0.00 0.00 32.23 0.98
538 569 3.307904 CCACGTAAAAGGGGGTGACTTAT 60.308 47.826 0.00 0.00 32.23 1.73
539 570 2.038820 CCACGTAAAAGGGGGTGACTTA 59.961 50.000 0.00 0.00 32.23 2.24
540 571 1.202842 CCACGTAAAAGGGGGTGACTT 60.203 52.381 0.00 0.00 32.23 3.01
541 572 0.399075 CCACGTAAAAGGGGGTGACT 59.601 55.000 0.00 0.00 32.23 3.41
542 573 2.936928 CCACGTAAAAGGGGGTGAC 58.063 57.895 0.00 0.00 32.23 3.67
549 580 1.003812 TGATGGGACCCACGTAAAAGG 59.996 52.381 17.78 0.00 35.80 3.11
550 581 2.483014 TGATGGGACCCACGTAAAAG 57.517 50.000 17.78 0.00 35.80 2.27
551 582 2.574369 AGATGATGGGACCCACGTAAAA 59.426 45.455 17.78 0.00 35.80 1.52
552 583 2.193127 AGATGATGGGACCCACGTAAA 58.807 47.619 17.78 0.00 35.80 2.01
553 584 1.874129 AGATGATGGGACCCACGTAA 58.126 50.000 17.78 1.60 35.80 3.18
554 585 1.874129 AAGATGATGGGACCCACGTA 58.126 50.000 17.78 5.41 35.80 3.57
555 586 0.991920 AAAGATGATGGGACCCACGT 59.008 50.000 17.78 11.38 35.80 4.49
556 587 2.093181 TGTAAAGATGATGGGACCCACG 60.093 50.000 17.78 0.00 35.80 4.94
557 588 3.644966 TGTAAAGATGATGGGACCCAC 57.355 47.619 17.78 10.73 35.80 4.61
558 589 5.985175 TTATGTAAAGATGATGGGACCCA 57.015 39.130 17.73 17.73 38.19 4.51
559 590 7.654022 TTTTTATGTAAAGATGATGGGACCC 57.346 36.000 2.45 2.45 0.00 4.46
580 611 3.055458 CCACACCTTTCCACCTTGTTTTT 60.055 43.478 0.00 0.00 0.00 1.94
581 612 2.499693 CCACACCTTTCCACCTTGTTTT 59.500 45.455 0.00 0.00 0.00 2.43
582 613 2.107366 CCACACCTTTCCACCTTGTTT 58.893 47.619 0.00 0.00 0.00 2.83
583 614 1.006639 ACCACACCTTTCCACCTTGTT 59.993 47.619 0.00 0.00 0.00 2.83
584 615 0.629058 ACCACACCTTTCCACCTTGT 59.371 50.000 0.00 0.00 0.00 3.16
585 616 1.318576 GACCACACCTTTCCACCTTG 58.681 55.000 0.00 0.00 0.00 3.61
586 617 0.923358 TGACCACACCTTTCCACCTT 59.077 50.000 0.00 0.00 0.00 3.50
587 618 0.474184 CTGACCACACCTTTCCACCT 59.526 55.000 0.00 0.00 0.00 4.00
588 619 0.537371 CCTGACCACACCTTTCCACC 60.537 60.000 0.00 0.00 0.00 4.61
589 620 0.182775 ACCTGACCACACCTTTCCAC 59.817 55.000 0.00 0.00 0.00 4.02
590 621 0.182537 CACCTGACCACACCTTTCCA 59.817 55.000 0.00 0.00 0.00 3.53
591 622 0.472471 TCACCTGACCACACCTTTCC 59.528 55.000 0.00 0.00 0.00 3.13
592 623 1.141053 AGTCACCTGACCACACCTTTC 59.859 52.381 1.66 0.00 45.85 2.62
593 624 1.213296 AGTCACCTGACCACACCTTT 58.787 50.000 1.66 0.00 45.85 3.11
594 625 1.213296 AAGTCACCTGACCACACCTT 58.787 50.000 1.66 0.00 45.85 3.50
595 626 2.097110 TAAGTCACCTGACCACACCT 57.903 50.000 1.66 0.00 45.85 4.00
596 627 4.020485 ACTTATAAGTCACCTGACCACACC 60.020 45.833 12.50 0.00 45.85 4.16
597 628 5.148651 ACTTATAAGTCACCTGACCACAC 57.851 43.478 12.50 0.00 45.85 3.82
609 640 5.790593 TGGTTGTCACCTGACTTATAAGTC 58.209 41.667 30.61 30.61 46.58 3.01
610 641 5.818678 TGGTTGTCACCTGACTTATAAGT 57.181 39.130 18.05 18.05 44.61 2.24
611 642 6.485313 TGTTTGGTTGTCACCTGACTTATAAG 59.515 38.462 11.05 11.05 44.61 1.73
612 643 6.358178 TGTTTGGTTGTCACCTGACTTATAA 58.642 36.000 6.97 0.00 44.61 0.98
613 644 5.931294 TGTTTGGTTGTCACCTGACTTATA 58.069 37.500 6.97 0.00 44.61 0.98
614 645 4.787551 TGTTTGGTTGTCACCTGACTTAT 58.212 39.130 6.97 0.00 44.61 1.73
615 646 4.196193 CTGTTTGGTTGTCACCTGACTTA 58.804 43.478 6.97 0.00 44.61 2.24
616 647 3.016736 CTGTTTGGTTGTCACCTGACTT 58.983 45.455 6.97 0.00 44.61 3.01
617 648 2.643551 CTGTTTGGTTGTCACCTGACT 58.356 47.619 6.97 0.00 44.61 3.41
618 649 1.676006 CCTGTTTGGTTGTCACCTGAC 59.324 52.381 0.00 0.00 44.61 3.51
619 650 2.021723 GCCTGTTTGGTTGTCACCTGA 61.022 52.381 0.00 0.00 44.61 3.86
620 651 0.385390 GCCTGTTTGGTTGTCACCTG 59.615 55.000 0.00 0.00 44.61 4.00
621 652 0.033601 TGCCTGTTTGGTTGTCACCT 60.034 50.000 0.00 0.00 44.61 4.00
622 653 1.039856 ATGCCTGTTTGGTTGTCACC 58.960 50.000 0.00 0.00 44.56 4.02
623 654 1.680735 TCATGCCTGTTTGGTTGTCAC 59.319 47.619 0.00 0.00 38.35 3.67
624 655 1.680735 GTCATGCCTGTTTGGTTGTCA 59.319 47.619 0.00 0.00 38.35 3.58
625 656 1.956477 AGTCATGCCTGTTTGGTTGTC 59.044 47.619 0.00 0.00 38.35 3.18
626 657 2.071778 AGTCATGCCTGTTTGGTTGT 57.928 45.000 0.00 0.00 38.35 3.32
627 658 4.789012 ATAAGTCATGCCTGTTTGGTTG 57.211 40.909 0.00 0.00 38.35 3.77
628 659 6.010219 ACTTATAAGTCATGCCTGTTTGGTT 58.990 36.000 12.50 0.00 32.86 3.67
629 660 5.570320 ACTTATAAGTCATGCCTGTTTGGT 58.430 37.500 12.50 0.00 32.86 3.67
648 679 9.485206 GTCAGGTTACTTAAAATCAGTGACTTA 57.515 33.333 0.00 0.00 32.63 2.24
649 680 8.211629 AGTCAGGTTACTTAAAATCAGTGACTT 58.788 33.333 0.00 0.00 32.63 3.01
650 681 7.736893 AGTCAGGTTACTTAAAATCAGTGACT 58.263 34.615 0.00 0.00 32.63 3.41
651 682 7.964604 AGTCAGGTTACTTAAAATCAGTGAC 57.035 36.000 0.00 0.00 31.52 3.67
682 713 8.733458 CCTGTTTGATTTCAATAAGTCATCTGA 58.267 33.333 0.00 0.00 35.55 3.27
683 714 7.487189 GCCTGTTTGATTTCAATAAGTCATCTG 59.513 37.037 0.00 0.00 35.55 2.90
684 715 7.363268 GGCCTGTTTGATTTCAATAAGTCATCT 60.363 37.037 0.00 0.00 35.55 2.90
685 716 6.753744 GGCCTGTTTGATTTCAATAAGTCATC 59.246 38.462 0.00 0.00 35.55 2.92
686 717 6.625740 CGGCCTGTTTGATTTCAATAAGTCAT 60.626 38.462 0.00 0.00 35.55 3.06
687 718 5.335583 CGGCCTGTTTGATTTCAATAAGTCA 60.336 40.000 0.00 0.00 35.55 3.41
688 719 5.095490 CGGCCTGTTTGATTTCAATAAGTC 58.905 41.667 0.00 0.00 35.55 3.01
689 720 4.522789 ACGGCCTGTTTGATTTCAATAAGT 59.477 37.500 0.00 0.00 35.55 2.24
690 721 5.059404 ACGGCCTGTTTGATTTCAATAAG 57.941 39.130 0.00 0.00 35.55 1.73
691 722 5.461032 AACGGCCTGTTTGATTTCAATAA 57.539 34.783 0.00 0.00 37.59 1.40
692 723 6.576662 TTAACGGCCTGTTTGATTTCAATA 57.423 33.333 16.22 0.00 42.09 1.90
693 724 5.461032 TTAACGGCCTGTTTGATTTCAAT 57.539 34.783 16.22 0.00 42.09 2.57
694 725 4.920640 TTAACGGCCTGTTTGATTTCAA 57.079 36.364 16.22 2.88 42.09 2.69
695 726 5.226396 CAATTAACGGCCTGTTTGATTTCA 58.774 37.500 16.22 0.00 42.09 2.69
696 727 4.625311 CCAATTAACGGCCTGTTTGATTTC 59.375 41.667 16.22 0.00 42.09 2.17
697 728 4.565022 CCAATTAACGGCCTGTTTGATTT 58.435 39.130 16.22 5.23 42.09 2.17
698 729 3.616317 GCCAATTAACGGCCTGTTTGATT 60.616 43.478 16.22 13.65 44.22 2.57
699 730 2.094234 GCCAATTAACGGCCTGTTTGAT 60.094 45.455 16.22 9.57 44.22 2.57
700 731 1.271102 GCCAATTAACGGCCTGTTTGA 59.729 47.619 16.22 8.01 44.22 2.69
701 732 1.708822 GCCAATTAACGGCCTGTTTG 58.291 50.000 16.22 9.86 44.22 2.93
709 740 2.102161 GCCGCTGCCAATTAACGG 59.898 61.111 0.00 0.00 46.50 4.44
742 774 2.223923 CCTGTATCTCCACAGCTACAGC 60.224 54.545 7.27 0.00 43.63 4.40
743 775 2.363680 CCCTGTATCTCCACAGCTACAG 59.636 54.545 6.17 6.17 44.19 2.74
744 776 2.024369 TCCCTGTATCTCCACAGCTACA 60.024 50.000 0.00 0.00 43.82 2.74
753 785 4.517075 GCAGCTTTAATTCCCTGTATCTCC 59.483 45.833 0.00 0.00 0.00 3.71
754 786 5.126067 TGCAGCTTTAATTCCCTGTATCTC 58.874 41.667 0.00 0.00 0.00 2.75
760 792 2.686915 CCTCTGCAGCTTTAATTCCCTG 59.313 50.000 9.47 0.00 0.00 4.45
763 795 1.406898 GCCCTCTGCAGCTTTAATTCC 59.593 52.381 9.47 0.00 40.77 3.01
780 812 6.346838 GCATTAATTTCAGCGATTAATTGCCC 60.347 38.462 21.75 0.00 37.50 5.36
783 815 6.146021 GGGGCATTAATTTCAGCGATTAATTG 59.854 38.462 0.00 0.00 37.50 2.32
905 937 2.664436 CGACCTTTTCCGTGGCGTC 61.664 63.158 0.00 0.00 0.00 5.19
907 939 4.084888 GCGACCTTTTCCGTGGCG 62.085 66.667 0.00 0.00 0.00 5.69
974 1006 1.017387 GCAGACGGATGAATGGGAAC 58.983 55.000 0.00 0.00 0.00 3.62
997 1030 1.208614 GCACAAGAAAGCGAGGCTG 59.791 57.895 0.00 0.00 39.62 4.85
1018 1051 1.768684 AACCTCGGAGGCTTGCTTGA 61.769 55.000 23.84 0.00 39.63 3.02
1032 1065 4.530553 AGGAAGAAGAAGAAGAGGAACCTC 59.469 45.833 12.42 12.42 43.03 3.85
1033 1066 4.498493 AGGAAGAAGAAGAAGAGGAACCT 58.502 43.478 0.00 0.00 0.00 3.50
1035 1068 4.323180 GGGAGGAAGAAGAAGAAGAGGAAC 60.323 50.000 0.00 0.00 0.00 3.62
1036 1069 3.841255 GGGAGGAAGAAGAAGAAGAGGAA 59.159 47.826 0.00 0.00 0.00 3.36
1037 1070 3.445987 GGGAGGAAGAAGAAGAAGAGGA 58.554 50.000 0.00 0.00 0.00 3.71
1038 1071 2.167487 CGGGAGGAAGAAGAAGAAGAGG 59.833 54.545 0.00 0.00 0.00 3.69
1056 1089 2.223066 GCTACGAGTGATATCGATCGGG 60.223 54.545 24.58 19.07 45.56 5.14
1061 1094 3.660865 TGCTAGCTACGAGTGATATCGA 58.339 45.455 17.23 0.00 45.56 3.59
1066 1099 0.671251 GCCTGCTAGCTACGAGTGAT 59.329 55.000 17.23 0.00 0.00 3.06
1082 1115 0.322906 GCCAAGGAAAGCAGTAGCCT 60.323 55.000 0.00 0.00 43.56 4.58
1091 1124 1.475682 GATCAAGCCAGCCAAGGAAAG 59.524 52.381 0.00 0.00 0.00 2.62
1100 1133 0.875474 GCTCTCTCGATCAAGCCAGC 60.875 60.000 0.00 0.00 0.00 4.85
1101 1134 0.594540 CGCTCTCTCGATCAAGCCAG 60.595 60.000 7.29 0.00 0.00 4.85
1102 1135 1.032114 TCGCTCTCTCGATCAAGCCA 61.032 55.000 7.29 0.00 33.02 4.75
1103 1136 0.317770 CTCGCTCTCTCGATCAAGCC 60.318 60.000 7.29 0.00 37.87 4.35
1312 1345 0.755698 TGGTACCTGGGAGATCTCGC 60.756 60.000 28.04 28.04 42.16 5.03
1344 1377 2.035632 AGAAGACGATGAAGCTAGGGG 58.964 52.381 0.00 0.00 0.00 4.79
1346 1379 4.647424 AGAAGAAGACGATGAAGCTAGG 57.353 45.455 0.00 0.00 0.00 3.02
1347 1380 5.890334 AGAAGAAGAAGACGATGAAGCTAG 58.110 41.667 0.00 0.00 0.00 3.42
1348 1381 5.906113 AGAAGAAGAAGACGATGAAGCTA 57.094 39.130 0.00 0.00 0.00 3.32
1349 1382 4.799564 AGAAGAAGAAGACGATGAAGCT 57.200 40.909 0.00 0.00 0.00 3.74
1350 1383 5.854431 AAAGAAGAAGAAGACGATGAAGC 57.146 39.130 0.00 0.00 0.00 3.86
1422 1455 1.527433 GGCCTTGCCTTCAGTTCCAC 61.527 60.000 0.00 0.00 46.69 4.02
1636 1671 3.114616 CACTCAGACTTGGCGCCG 61.115 66.667 23.90 11.34 0.00 6.46
1745 1780 3.650139 GAGTAGAGTCTAGAGAGAGGCG 58.350 54.545 0.00 0.00 30.20 5.52
1801 1841 1.197721 CCTGACCGATCAAAAGCACAC 59.802 52.381 0.00 0.00 33.30 3.82
2054 2094 1.101049 CACTGTTGGTGGTGGTGGAC 61.101 60.000 0.00 0.00 41.90 4.02
2055 2095 1.225983 CACTGTTGGTGGTGGTGGA 59.774 57.895 0.00 0.00 41.90 4.02
2169 2209 2.650602 CGTTTGCGCGTTGCTTGT 60.651 55.556 8.43 0.00 46.63 3.16
2267 2307 2.843701 CTTCTTCTTCCCATCATCCCG 58.156 52.381 0.00 0.00 0.00 5.14
2268 2308 2.174424 AGCTTCTTCTTCCCATCATCCC 59.826 50.000 0.00 0.00 0.00 3.85
2269 2309 3.574354 AGCTTCTTCTTCCCATCATCC 57.426 47.619 0.00 0.00 0.00 3.51
2441 2481 4.233635 CCGTCGTCGTAGCTCCCG 62.234 72.222 0.71 0.00 35.01 5.14
2535 2575 6.816640 TGAACATTCGATCAGTAAAACCTAGG 59.183 38.462 7.41 7.41 0.00 3.02
2543 2583 8.267620 ACAATCAATGAACATTCGATCAGTAA 57.732 30.769 0.00 0.00 0.00 2.24
2709 2752 6.178324 ACATCAGCTCAATGAAGATTGAAGA 58.822 36.000 11.64 0.00 45.89 2.87
2710 2753 6.438259 ACATCAGCTCAATGAAGATTGAAG 57.562 37.500 11.64 0.00 45.89 3.02
2711 2754 6.208007 ACAACATCAGCTCAATGAAGATTGAA 59.792 34.615 11.64 0.00 45.89 2.69
2712 2755 5.708697 ACAACATCAGCTCAATGAAGATTGA 59.291 36.000 11.64 0.00 44.73 2.57
2713 2756 5.950883 ACAACATCAGCTCAATGAAGATTG 58.049 37.500 11.64 8.24 40.47 2.67
2714 2757 5.163784 CGACAACATCAGCTCAATGAAGATT 60.164 40.000 11.64 0.00 31.76 2.40
2715 2758 4.331992 CGACAACATCAGCTCAATGAAGAT 59.668 41.667 11.64 0.00 31.76 2.40
2761 2804 3.446516 AGTTTAGGCGACCGAGAATTAGT 59.553 43.478 0.00 0.00 0.00 2.24
2781 2824 4.184649 ACTCAAAGATCCCCACAAAAGT 57.815 40.909 0.00 0.00 0.00 2.66
2782 2825 5.770162 AGTTACTCAAAGATCCCCACAAAAG 59.230 40.000 0.00 0.00 0.00 2.27
2833 2876 7.855784 AACTACATTTTGGGAAAAGGATCTT 57.144 32.000 0.84 0.00 35.84 2.40
2843 2886 6.307776 TCATGTGGTTAACTACATTTTGGGA 58.692 36.000 28.83 20.94 44.10 4.37
2879 2928 3.118811 AGCTGGCAGACTTCTTGAGATAC 60.119 47.826 20.86 0.00 0.00 2.24
2880 2929 3.102972 AGCTGGCAGACTTCTTGAGATA 58.897 45.455 20.86 0.00 0.00 1.98
2881 2930 1.907936 AGCTGGCAGACTTCTTGAGAT 59.092 47.619 20.86 0.00 0.00 2.75
2882 2931 1.346062 AGCTGGCAGACTTCTTGAGA 58.654 50.000 20.86 0.00 0.00 3.27
2883 2932 3.540314 ATAGCTGGCAGACTTCTTGAG 57.460 47.619 20.86 0.00 0.00 3.02
2884 2933 3.988976 AATAGCTGGCAGACTTCTTGA 57.011 42.857 20.86 0.00 0.00 3.02
2885 2934 6.116680 CTAAAATAGCTGGCAGACTTCTTG 57.883 41.667 20.86 0.00 0.00 3.02
2911 2965 3.197265 ACTTGCCAAGAATTGTTTGTGC 58.803 40.909 12.25 0.00 46.99 4.57
2928 2982 6.481976 TCCACGCCAACTTCATATATAACTTG 59.518 38.462 0.00 0.00 0.00 3.16
2942 2996 0.400213 TCCTCATTTCCACGCCAACT 59.600 50.000 0.00 0.00 0.00 3.16
2944 2998 1.462616 CATCCTCATTTCCACGCCAA 58.537 50.000 0.00 0.00 0.00 4.52
2948 3010 1.745087 CCAACCATCCTCATTTCCACG 59.255 52.381 0.00 0.00 0.00 4.94
2950 3012 1.715931 ACCCAACCATCCTCATTTCCA 59.284 47.619 0.00 0.00 0.00 3.53
2969 3066 7.660208 TCTCTAAGTCTTAATTTGGACCAACAC 59.340 37.037 6.36 0.00 33.39 3.32
3000 3097 9.796120 CAAAACCATAAGTTGTCTGAACTTTTA 57.204 29.630 5.20 0.00 40.58 1.52
3002 3099 6.756542 GCAAAACCATAAGTTGTCTGAACTTT 59.243 34.615 5.20 0.00 40.58 2.66
3005 3102 5.587289 TGCAAAACCATAAGTTGTCTGAAC 58.413 37.500 0.00 0.00 39.19 3.18
3035 3137 5.815740 CGCCACACATACTAAACCTAAAGAT 59.184 40.000 0.00 0.00 0.00 2.40
3044 3146 5.539979 TCTACAAACGCCACACATACTAAA 58.460 37.500 0.00 0.00 0.00 1.85
3047 3149 3.671008 TCTACAAACGCCACACATACT 57.329 42.857 0.00 0.00 0.00 2.12
3079 3185 9.976511 CGAGGTCCTTATTATAGTTAACAATGA 57.023 33.333 8.61 0.00 0.00 2.57
3089 3195 4.142945 CGACGACCGAGGTCCTTATTATAG 60.143 50.000 15.88 2.19 41.76 1.31
3090 3196 3.748048 CGACGACCGAGGTCCTTATTATA 59.252 47.826 15.88 0.00 41.76 0.98
3154 3264 1.343465 ACAACAAGGACACGACTAGGG 59.657 52.381 0.00 0.00 0.00 3.53
3173 3283 8.250332 TGTTAATTATTTTGGATGAGAAGGCAC 58.750 33.333 0.00 0.00 0.00 5.01
3227 3340 5.275067 AGCTAGAGAACAGAATAAGCCAG 57.725 43.478 0.00 0.00 0.00 4.85
3228 3341 5.221342 GCTAGCTAGAGAACAGAATAAGCCA 60.221 44.000 25.15 0.00 0.00 4.75
3229 3342 5.010617 AGCTAGCTAGAGAACAGAATAAGCC 59.989 44.000 25.15 0.49 0.00 4.35
3365 3490 7.994425 TGGTTTAGATATCTCTCTAGCTCTG 57.006 40.000 8.95 0.00 32.66 3.35
3395 3520 0.819259 ACACACACACCATGGCTCAC 60.819 55.000 13.04 0.00 0.00 3.51
3400 3525 0.381445 CACACACACACACACCATGG 59.619 55.000 11.19 11.19 0.00 3.66
3409 3534 1.931551 CGCACCTACACACACACAC 59.068 57.895 0.00 0.00 0.00 3.82
3410 3535 1.885388 GCGCACCTACACACACACA 60.885 57.895 0.30 0.00 0.00 3.72
3411 3536 0.319211 TAGCGCACCTACACACACAC 60.319 55.000 11.47 0.00 0.00 3.82
3412 3537 0.389757 TTAGCGCACCTACACACACA 59.610 50.000 11.47 0.00 0.00 3.72
3413 3538 1.459592 CTTTAGCGCACCTACACACAC 59.540 52.381 11.47 0.00 0.00 3.82
3414 3539 1.069513 ACTTTAGCGCACCTACACACA 59.930 47.619 11.47 0.00 0.00 3.72
3415 3540 1.459592 CACTTTAGCGCACCTACACAC 59.540 52.381 11.47 0.00 0.00 3.82
3416 3541 1.341852 TCACTTTAGCGCACCTACACA 59.658 47.619 11.47 0.00 0.00 3.72
3417 3542 1.993370 CTCACTTTAGCGCACCTACAC 59.007 52.381 11.47 0.00 0.00 2.90
3418 3543 1.671850 GCTCACTTTAGCGCACCTACA 60.672 52.381 11.47 0.00 31.76 2.74
3419 3544 1.000145 GCTCACTTTAGCGCACCTAC 59.000 55.000 11.47 0.00 31.76 3.18
3420 3545 0.108329 GGCTCACTTTAGCGCACCTA 60.108 55.000 11.47 0.00 43.74 3.08
3421 3546 1.376037 GGCTCACTTTAGCGCACCT 60.376 57.895 11.47 0.00 43.74 4.00
3422 3547 3.178539 GGCTCACTTTAGCGCACC 58.821 61.111 11.47 0.00 43.74 5.01
3426 3551 2.167861 GCTCGGGCTCACTTTAGCG 61.168 63.158 0.00 0.00 43.74 4.26
3427 3552 2.167861 CGCTCGGGCTCACTTTAGC 61.168 63.158 5.36 0.00 41.99 3.09
3428 3553 2.167861 GCGCTCGGGCTCACTTTAG 61.168 63.158 5.36 0.00 36.09 1.85
3429 3554 2.125673 GCGCTCGGGCTCACTTTA 60.126 61.111 5.36 0.00 36.09 1.85
3430 3555 4.314440 TGCGCTCGGGCTCACTTT 62.314 61.111 9.73 0.00 36.09 2.66
3445 3570 2.721129 GCGTAGAATAAGCACAGTGC 57.279 50.000 18.55 18.55 45.61 4.40
3452 3577 1.602416 GGGTCGGAGCGTAGAATAAGC 60.602 57.143 0.53 0.00 46.70 3.09
3453 3578 1.679680 TGGGTCGGAGCGTAGAATAAG 59.320 52.381 0.53 0.00 0.00 1.73
3454 3579 1.766494 TGGGTCGGAGCGTAGAATAA 58.234 50.000 0.53 0.00 0.00 1.40
3455 3580 1.611977 CATGGGTCGGAGCGTAGAATA 59.388 52.381 0.53 0.00 0.00 1.75
3456 3581 0.389391 CATGGGTCGGAGCGTAGAAT 59.611 55.000 0.53 0.00 0.00 2.40
3457 3582 1.672854 CCATGGGTCGGAGCGTAGAA 61.673 60.000 2.85 0.00 0.00 2.10
3458 3583 2.125326 CCATGGGTCGGAGCGTAGA 61.125 63.158 2.85 0.00 0.00 2.59
3459 3584 2.076622 CTCCATGGGTCGGAGCGTAG 62.077 65.000 13.02 0.00 43.50 3.51
3460 3585 2.043752 TCCATGGGTCGGAGCGTA 60.044 61.111 13.02 0.00 0.00 4.42
3461 3586 3.461773 CTCCATGGGTCGGAGCGT 61.462 66.667 13.02 0.00 43.50 5.07
3471 3596 3.925630 AACAGGGTGCGCTCCATGG 62.926 63.158 36.78 23.89 42.63 3.66
3472 3597 1.973281 AAACAGGGTGCGCTCCATG 60.973 57.895 33.95 33.95 43.73 3.66
3473 3598 1.973281 CAAACAGGGTGCGCTCCAT 60.973 57.895 28.14 20.31 0.00 3.41
3474 3599 2.594303 CAAACAGGGTGCGCTCCA 60.594 61.111 28.14 0.00 0.00 3.86
3475 3600 4.043200 GCAAACAGGGTGCGCTCC 62.043 66.667 20.16 20.16 31.20 4.70
3476 3601 1.234615 TTAGCAAACAGGGTGCGCTC 61.235 55.000 9.73 4.47 46.86 5.03
3477 3602 0.609131 ATTAGCAAACAGGGTGCGCT 60.609 50.000 9.73 0.00 46.86 5.92
3478 3603 0.179163 GATTAGCAAACAGGGTGCGC 60.179 55.000 0.00 0.00 46.86 6.09
3479 3604 0.096976 CGATTAGCAAACAGGGTGCG 59.903 55.000 0.00 0.00 46.86 5.34
3480 3605 0.451783 CCGATTAGCAAACAGGGTGC 59.548 55.000 0.00 0.00 42.55 5.01
3481 3606 1.821216 ACCGATTAGCAAACAGGGTG 58.179 50.000 0.00 0.00 0.00 4.61
3482 3607 2.579410 AACCGATTAGCAAACAGGGT 57.421 45.000 0.00 0.00 0.00 4.34
3483 3608 3.340034 TGTAACCGATTAGCAAACAGGG 58.660 45.455 0.00 0.00 0.00 4.45
3484 3609 4.634004 TGATGTAACCGATTAGCAAACAGG 59.366 41.667 0.00 0.00 0.00 4.00
3485 3610 5.794687 TGATGTAACCGATTAGCAAACAG 57.205 39.130 0.00 0.00 0.00 3.16
3486 3611 6.597672 AGAATGATGTAACCGATTAGCAAACA 59.402 34.615 0.00 0.00 0.00 2.83
3487 3612 7.016361 AGAATGATGTAACCGATTAGCAAAC 57.984 36.000 0.00 0.00 0.00 2.93
3488 3613 7.624360 AAGAATGATGTAACCGATTAGCAAA 57.376 32.000 0.00 0.00 0.00 3.68
3489 3614 7.624360 AAAGAATGATGTAACCGATTAGCAA 57.376 32.000 0.00 0.00 0.00 3.91
3490 3615 8.725405 TTAAAGAATGATGTAACCGATTAGCA 57.275 30.769 0.00 0.00 0.00 3.49
3495 3620 8.495949 CGCTAATTAAAGAATGATGTAACCGAT 58.504 33.333 0.00 0.00 0.00 4.18
3496 3621 7.517734 GCGCTAATTAAAGAATGATGTAACCGA 60.518 37.037 0.00 0.00 0.00 4.69
3497 3622 6.573725 GCGCTAATTAAAGAATGATGTAACCG 59.426 38.462 0.00 0.00 0.00 4.44
3498 3623 7.414436 TGCGCTAATTAAAGAATGATGTAACC 58.586 34.615 9.73 0.00 0.00 2.85
3499 3624 7.112148 GCTGCGCTAATTAAAGAATGATGTAAC 59.888 37.037 9.73 0.00 0.00 2.50
3500 3625 7.132213 GCTGCGCTAATTAAAGAATGATGTAA 58.868 34.615 9.73 0.00 0.00 2.41
3501 3626 6.293407 GGCTGCGCTAATTAAAGAATGATGTA 60.293 38.462 9.73 0.00 0.00 2.29
3502 3627 5.506317 GGCTGCGCTAATTAAAGAATGATGT 60.506 40.000 9.73 0.00 0.00 3.06
3503 3628 4.913924 GGCTGCGCTAATTAAAGAATGATG 59.086 41.667 9.73 0.00 0.00 3.07
3504 3629 4.580167 TGGCTGCGCTAATTAAAGAATGAT 59.420 37.500 9.73 0.00 0.00 2.45
3505 3630 3.944650 TGGCTGCGCTAATTAAAGAATGA 59.055 39.130 9.73 0.00 0.00 2.57
3506 3631 4.037690 GTGGCTGCGCTAATTAAAGAATG 58.962 43.478 9.73 0.00 0.00 2.67
3507 3632 3.694072 TGTGGCTGCGCTAATTAAAGAAT 59.306 39.130 9.73 0.00 0.00 2.40
3508 3633 3.078097 TGTGGCTGCGCTAATTAAAGAA 58.922 40.909 9.73 0.00 0.00 2.52
3509 3634 2.705730 TGTGGCTGCGCTAATTAAAGA 58.294 42.857 9.73 0.00 0.00 2.52
3510 3635 3.365832 CATGTGGCTGCGCTAATTAAAG 58.634 45.455 9.73 0.00 0.00 1.85
3511 3636 2.479389 GCATGTGGCTGCGCTAATTAAA 60.479 45.455 9.73 0.00 40.25 1.52
3512 3637 1.065401 GCATGTGGCTGCGCTAATTAA 59.935 47.619 9.73 0.00 40.25 1.40
3513 3638 0.662619 GCATGTGGCTGCGCTAATTA 59.337 50.000 9.73 0.00 40.25 1.40
3514 3639 1.314534 TGCATGTGGCTGCGCTAATT 61.315 50.000 9.73 0.00 45.30 1.40
3515 3640 1.105167 ATGCATGTGGCTGCGCTAAT 61.105 50.000 9.73 0.00 45.30 1.73
3516 3641 1.750018 ATGCATGTGGCTGCGCTAA 60.750 52.632 9.73 0.00 45.30 3.09
3517 3642 2.124612 ATGCATGTGGCTGCGCTA 60.125 55.556 9.73 0.00 45.30 4.26
3518 3643 3.822192 CATGCATGTGGCTGCGCT 61.822 61.111 18.91 0.00 45.30 5.92
3520 3645 2.065906 TATGCATGCATGTGGCTGCG 62.066 55.000 37.43 0.03 45.30 5.18
3521 3646 0.317160 ATATGCATGCATGTGGCTGC 59.683 50.000 37.43 14.35 45.15 5.25
3522 3647 2.817844 ACTATATGCATGCATGTGGCTG 59.182 45.455 37.43 24.20 45.15 4.85
3523 3648 3.150458 ACTATATGCATGCATGTGGCT 57.850 42.857 37.43 21.68 45.15 4.75
3524 3649 5.375417 TTTACTATATGCATGCATGTGGC 57.625 39.130 37.43 14.14 45.13 5.01
3550 3675 9.804758 CGGGCCAAACATAGTAAATAAATTAAA 57.195 29.630 4.39 0.00 0.00 1.52
3551 3676 7.921745 GCGGGCCAAACATAGTAAATAAATTAA 59.078 33.333 4.39 0.00 0.00 1.40
3552 3677 7.427214 GCGGGCCAAACATAGTAAATAAATTA 58.573 34.615 4.39 0.00 0.00 1.40
3553 3678 6.277605 GCGGGCCAAACATAGTAAATAAATT 58.722 36.000 4.39 0.00 0.00 1.82
3554 3679 5.506649 CGCGGGCCAAACATAGTAAATAAAT 60.507 40.000 4.39 0.00 0.00 1.40
3555 3680 4.201930 CGCGGGCCAAACATAGTAAATAAA 60.202 41.667 4.39 0.00 0.00 1.40
3556 3681 3.312973 CGCGGGCCAAACATAGTAAATAA 59.687 43.478 4.39 0.00 0.00 1.40
3557 3682 2.873472 CGCGGGCCAAACATAGTAAATA 59.127 45.455 4.39 0.00 0.00 1.40
3558 3683 1.673920 CGCGGGCCAAACATAGTAAAT 59.326 47.619 4.39 0.00 0.00 1.40
3559 3684 1.088306 CGCGGGCCAAACATAGTAAA 58.912 50.000 4.39 0.00 0.00 2.01
3560 3685 0.036199 ACGCGGGCCAAACATAGTAA 60.036 50.000 12.47 0.00 0.00 2.24
3561 3686 0.036199 AACGCGGGCCAAACATAGTA 60.036 50.000 12.47 0.00 0.00 1.82
3562 3687 0.891904 AAACGCGGGCCAAACATAGT 60.892 50.000 12.47 0.00 0.00 2.12
3563 3688 0.242555 AAAACGCGGGCCAAACATAG 59.757 50.000 12.47 0.00 0.00 2.23
3564 3689 1.199558 GTAAAACGCGGGCCAAACATA 59.800 47.619 12.47 0.00 0.00 2.29
3565 3690 0.038983 GTAAAACGCGGGCCAAACAT 60.039 50.000 12.47 0.00 0.00 2.71
3566 3691 1.102222 AGTAAAACGCGGGCCAAACA 61.102 50.000 12.47 0.00 0.00 2.83
3567 3692 0.873721 TAGTAAAACGCGGGCCAAAC 59.126 50.000 12.47 0.34 0.00 2.93
3568 3693 1.158434 CTAGTAAAACGCGGGCCAAA 58.842 50.000 12.47 0.00 0.00 3.28
3569 3694 1.300266 GCTAGTAAAACGCGGGCCAA 61.300 55.000 12.47 0.00 0.00 4.52
3570 3695 1.742510 GCTAGTAAAACGCGGGCCA 60.743 57.895 12.47 0.00 0.00 5.36
3571 3696 1.093496 ATGCTAGTAAAACGCGGGCC 61.093 55.000 12.47 0.00 0.00 5.80
3572 3697 0.027586 CATGCTAGTAAAACGCGGGC 59.972 55.000 12.47 1.99 0.00 6.13
3573 3698 0.027586 GCATGCTAGTAAAACGCGGG 59.972 55.000 12.47 0.00 0.00 6.13
3574 3699 0.315059 CGCATGCTAGTAAAACGCGG 60.315 55.000 17.13 0.00 37.72 6.46
3575 3700 0.643310 TCGCATGCTAGTAAAACGCG 59.357 50.000 17.13 3.53 42.40 6.01
3576 3701 1.659098 ACTCGCATGCTAGTAAAACGC 59.341 47.619 22.21 0.00 0.00 4.84
3577 3702 2.035674 CGACTCGCATGCTAGTAAAACG 60.036 50.000 23.37 18.13 0.00 3.60
3578 3703 3.176708 TCGACTCGCATGCTAGTAAAAC 58.823 45.455 23.37 11.05 0.00 2.43
3579 3704 3.435566 CTCGACTCGCATGCTAGTAAAA 58.564 45.455 23.37 11.58 0.00 1.52
3580 3705 2.223502 CCTCGACTCGCATGCTAGTAAA 60.224 50.000 23.37 13.80 0.00 2.01
3581 3706 1.333931 CCTCGACTCGCATGCTAGTAA 59.666 52.381 23.37 14.12 0.00 2.24
3582 3707 0.945099 CCTCGACTCGCATGCTAGTA 59.055 55.000 23.37 9.45 0.00 1.82
3583 3708 0.748367 TCCTCGACTCGCATGCTAGT 60.748 55.000 23.52 23.52 0.00 2.57
3584 3709 0.595588 ATCCTCGACTCGCATGCTAG 59.404 55.000 17.08 17.08 0.00 3.42
3585 3710 0.312102 CATCCTCGACTCGCATGCTA 59.688 55.000 17.13 3.43 0.00 3.49
3586 3711 1.067084 CATCCTCGACTCGCATGCT 59.933 57.895 17.13 0.00 0.00 3.79
3587 3712 2.593134 GCATCCTCGACTCGCATGC 61.593 63.158 7.91 7.91 33.57 4.06
3588 3713 2.298629 CGCATCCTCGACTCGCATG 61.299 63.158 0.00 0.00 0.00 4.06
3589 3714 2.026734 CGCATCCTCGACTCGCAT 59.973 61.111 0.00 0.00 0.00 4.73
3590 3715 3.113386 CTCGCATCCTCGACTCGCA 62.113 63.158 0.00 0.00 34.46 5.10
3591 3716 2.352915 CTCGCATCCTCGACTCGC 60.353 66.667 0.00 0.00 34.46 5.03
3592 3717 1.010574 GTCTCGCATCCTCGACTCG 60.011 63.158 0.00 0.00 34.46 4.18
3593 3718 0.028770 CTGTCTCGCATCCTCGACTC 59.971 60.000 0.00 0.00 34.46 3.36
3594 3719 0.393132 TCTGTCTCGCATCCTCGACT 60.393 55.000 0.00 0.00 34.46 4.18
3595 3720 0.248296 GTCTGTCTCGCATCCTCGAC 60.248 60.000 0.00 0.00 34.46 4.20
3596 3721 1.706287 CGTCTGTCTCGCATCCTCGA 61.706 60.000 0.00 0.00 36.94 4.04
3597 3722 1.297967 CGTCTGTCTCGCATCCTCG 60.298 63.158 0.00 0.00 0.00 4.63
3598 3723 0.248296 GTCGTCTGTCTCGCATCCTC 60.248 60.000 0.00 0.00 0.00 3.71
3599 3724 0.960861 TGTCGTCTGTCTCGCATCCT 60.961 55.000 0.00 0.00 0.00 3.24
3600 3725 0.101399 ATGTCGTCTGTCTCGCATCC 59.899 55.000 0.00 0.00 0.00 3.51
3601 3726 1.585668 CAATGTCGTCTGTCTCGCATC 59.414 52.381 0.00 0.00 0.00 3.91
3602 3727 1.633561 CAATGTCGTCTGTCTCGCAT 58.366 50.000 0.00 0.00 0.00 4.73
3603 3728 1.008875 GCAATGTCGTCTGTCTCGCA 61.009 55.000 0.00 0.00 0.00 5.10
3604 3729 0.734253 AGCAATGTCGTCTGTCTCGC 60.734 55.000 0.00 0.00 0.00 5.03
3605 3730 1.388093 CAAGCAATGTCGTCTGTCTCG 59.612 52.381 0.00 0.00 0.00 4.04
3606 3731 2.408050 ACAAGCAATGTCGTCTGTCTC 58.592 47.619 0.00 0.00 37.96 3.36
3607 3732 2.533266 ACAAGCAATGTCGTCTGTCT 57.467 45.000 0.00 0.00 37.96 3.41
3608 3733 2.543848 TCAACAAGCAATGTCGTCTGTC 59.456 45.455 0.00 0.00 42.99 3.51
3609 3734 2.287915 GTCAACAAGCAATGTCGTCTGT 59.712 45.455 0.00 0.00 42.99 3.41
3610 3735 2.349817 GGTCAACAAGCAATGTCGTCTG 60.350 50.000 0.00 0.00 42.99 3.51
3611 3736 1.873591 GGTCAACAAGCAATGTCGTCT 59.126 47.619 0.00 0.00 42.99 4.18
3612 3737 1.398451 CGGTCAACAAGCAATGTCGTC 60.398 52.381 0.00 0.00 42.99 4.20
3613 3738 0.586319 CGGTCAACAAGCAATGTCGT 59.414 50.000 0.00 0.00 42.99 4.34
3614 3739 0.586319 ACGGTCAACAAGCAATGTCG 59.414 50.000 0.00 0.00 42.99 4.35
3615 3740 3.889196 TTACGGTCAACAAGCAATGTC 57.111 42.857 0.00 0.00 42.99 3.06
3616 3741 4.277174 TGAATTACGGTCAACAAGCAATGT 59.723 37.500 0.00 0.00 46.82 2.71
3617 3742 4.793071 TGAATTACGGTCAACAAGCAATG 58.207 39.130 0.00 0.00 0.00 2.82
3618 3743 5.643379 ATGAATTACGGTCAACAAGCAAT 57.357 34.783 0.00 0.00 0.00 3.56
3619 3744 5.446143 AATGAATTACGGTCAACAAGCAA 57.554 34.783 0.00 0.00 0.00 3.91
3620 3745 5.446143 AAATGAATTACGGTCAACAAGCA 57.554 34.783 0.00 0.00 0.00 3.91
3621 3746 7.220108 GGATTAAATGAATTACGGTCAACAAGC 59.780 37.037 0.00 0.00 0.00 4.01
3622 3747 8.458843 AGGATTAAATGAATTACGGTCAACAAG 58.541 33.333 0.00 0.00 0.00 3.16
3623 3748 8.240682 CAGGATTAAATGAATTACGGTCAACAA 58.759 33.333 0.00 0.00 0.00 2.83
3624 3749 7.392113 ACAGGATTAAATGAATTACGGTCAACA 59.608 33.333 0.00 0.00 0.00 3.33
3625 3750 7.758495 ACAGGATTAAATGAATTACGGTCAAC 58.242 34.615 0.00 0.00 0.00 3.18
3626 3751 7.931578 ACAGGATTAAATGAATTACGGTCAA 57.068 32.000 0.00 0.00 0.00 3.18
3627 3752 7.931578 AACAGGATTAAATGAATTACGGTCA 57.068 32.000 0.00 0.00 0.00 4.02
3628 3753 8.340443 GGTAACAGGATTAAATGAATTACGGTC 58.660 37.037 0.00 0.00 0.00 4.79
3629 3754 7.830201 TGGTAACAGGATTAAATGAATTACGGT 59.170 33.333 0.00 0.00 46.17 4.83
3630 3755 8.215926 TGGTAACAGGATTAAATGAATTACGG 57.784 34.615 0.00 0.00 46.17 4.02
3670 3795 2.791347 TCCCGCCATGCTAGTAAAAA 57.209 45.000 0.00 0.00 0.00 1.94
3671 3796 2.171659 TGATCCCGCCATGCTAGTAAAA 59.828 45.455 0.00 0.00 0.00 1.52
3672 3797 1.765904 TGATCCCGCCATGCTAGTAAA 59.234 47.619 0.00 0.00 0.00 2.01
3673 3798 1.344438 CTGATCCCGCCATGCTAGTAA 59.656 52.381 0.00 0.00 0.00 2.24
3674 3799 0.969149 CTGATCCCGCCATGCTAGTA 59.031 55.000 0.00 0.00 0.00 1.82
3675 3800 1.050988 ACTGATCCCGCCATGCTAGT 61.051 55.000 0.00 0.00 0.00 2.57
3676 3801 1.750930 ACTGATCCCGCCATGCTAG 59.249 57.895 0.00 0.00 0.00 3.42
3677 3802 3.970332 ACTGATCCCGCCATGCTA 58.030 55.556 0.00 0.00 0.00 3.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.