Multiple sequence alignment - TraesCS5A01G142100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G142100 chr5A 100.000 4155 0 0 1 4155 315493734 315497888 0.000000e+00 7673.0
1 TraesCS5A01G142100 chr5A 90.789 152 12 2 1000 1150 645261079 645261229 7.040000e-48 202.0
2 TraesCS5A01G142100 chr5A 89.062 128 14 0 2117 2244 645262470 645262597 4.300000e-35 159.0
3 TraesCS5A01G142100 chr5D 90.510 3688 218 55 134 3746 238713630 238710000 0.000000e+00 4750.0
4 TraesCS5A01G142100 chr5D 90.132 152 13 2 1000 1150 517840473 517840623 3.280000e-46 196.0
5 TraesCS5A01G142100 chr5D 89.062 128 14 0 2117 2244 517841771 517841898 4.300000e-35 159.0
6 TraesCS5A01G142100 chr5B 94.235 2949 104 21 637 3564 266003800 266006703 0.000000e+00 4444.0
7 TraesCS5A01G142100 chr5B 87.579 636 76 3 1 634 266001925 266002559 0.000000e+00 734.0
8 TraesCS5A01G142100 chr5B 98.857 175 1 1 3982 4155 429427550 429427376 1.120000e-80 311.0
9 TraesCS5A01G142100 chr5B 89.474 152 14 2 1000 1150 650546201 650546351 1.520000e-44 191.0
10 TraesCS5A01G142100 chr5B 89.062 128 14 0 2117 2244 650547709 650547836 4.300000e-35 159.0
11 TraesCS5A01G142100 chr5B 96.875 32 1 0 3940 3971 266007804 266007835 2.000000e-03 54.7
12 TraesCS5A01G142100 chr7B 98.864 176 1 1 3981 4155 449544494 449544319 3.120000e-81 313.0
13 TraesCS5A01G142100 chr6A 98.305 177 2 1 3980 4155 485754925 485754749 4.030000e-80 309.0
14 TraesCS5A01G142100 chr3B 98.851 174 1 1 3983 4155 8463027 8462854 4.030000e-80 309.0
15 TraesCS5A01G142100 chr3B 98.295 176 2 1 3981 4155 536901301 536901126 1.450000e-79 307.0
16 TraesCS5A01G142100 chr3B 87.402 127 16 0 2118 2244 581029962 581030088 3.350000e-31 147.0
17 TraesCS5A01G142100 chr3B 84.810 79 12 0 1876 1954 581029701 581029779 3.440000e-11 80.5
18 TraesCS5A01G142100 chr3A 97.778 180 3 1 3977 4155 128134672 128134851 4.030000e-80 309.0
19 TraesCS5A01G142100 chr3A 85.625 160 19 3 993 1151 584276538 584276694 9.240000e-37 165.0
20 TraesCS5A01G142100 chr3A 86.076 79 11 0 1876 1954 584276988 584277066 7.400000e-13 86.1
21 TraesCS5A01G142100 chr1B 98.305 177 2 1 3980 4155 12757152 12756976 4.030000e-80 309.0
22 TraesCS5A01G142100 chr2D 98.295 176 2 1 3981 4155 574926924 574927099 1.450000e-79 307.0
23 TraesCS5A01G142100 chr2D 88.095 126 15 0 2119 2244 277680333 277680458 2.590000e-32 150.0
24 TraesCS5A01G142100 chr1A 98.295 176 2 1 3981 4155 42226163 42225988 1.450000e-79 307.0
25 TraesCS5A01G142100 chr7A 80.546 293 44 9 2652 2936 10222105 10221818 3.250000e-51 213.0
26 TraesCS5A01G142100 chr7A 80.000 305 47 10 2640 2936 10241297 10240999 3.250000e-51 213.0
27 TraesCS5A01G142100 chr7A 86.408 103 14 0 1053 1155 10223953 10223851 3.390000e-21 113.0
28 TraesCS5A01G142100 chr2A 88.095 126 15 0 2119 2244 293936390 293936265 2.590000e-32 150.0
29 TraesCS5A01G142100 chr3D 86.076 79 11 0 1876 1954 443259444 443259522 7.400000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G142100 chr5A 315493734 315497888 4154 False 7673.000000 7673 100.000000 1 4155 1 chr5A.!!$F1 4154
1 TraesCS5A01G142100 chr5D 238710000 238713630 3630 True 4750.000000 4750 90.510000 134 3746 1 chr5D.!!$R1 3612
2 TraesCS5A01G142100 chr5B 266001925 266007835 5910 False 1744.233333 4444 92.896333 1 3971 3 chr5B.!!$F1 3970

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
224 226 0.395862 CGGTGGCTCCCTAGAGAAGA 60.396 60.0 0.00 0.0 43.39 2.87 F
1184 2467 0.097674 CGCGCTGCTATTTTCTGCTT 59.902 50.0 5.56 0.0 0.00 3.91 F
2990 4317 0.554792 CTCAGGGCTGGAATGGGAAT 59.445 55.0 0.00 0.0 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1458 2750 0.179020 CCAGGCAACCACAGACAGAA 60.179 55.0 0.0 0.0 37.17 3.02 R
3142 4469 0.877743 GAAGCCTTCAGGACTGCAAC 59.122 55.0 0.0 0.0 37.39 4.17 R
4041 6116 0.035152 ATGCGAGCACCAGGATTTGA 60.035 50.0 0.0 0.0 0.00 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.694746 TCACTCGCGACCCTTGAT 58.305 55.556 3.71 0.00 0.00 2.57
72 73 1.817099 GCGCTGCTACCAATCTGCT 60.817 57.895 0.00 0.00 0.00 4.24
73 74 1.372087 GCGCTGCTACCAATCTGCTT 61.372 55.000 0.00 0.00 0.00 3.91
85 86 3.119602 CCAATCTGCTTCATGTCTTGTGG 60.120 47.826 0.00 0.00 0.00 4.17
103 104 4.089839 CCTTAGGGCCATGGAGGT 57.910 61.111 18.40 0.00 40.61 3.85
115 116 0.975887 ATGGAGGTGCGGCAAATTTT 59.024 45.000 3.23 0.00 0.00 1.82
146 147 2.354401 CGAGAGGGCTCCTGCTTCA 61.354 63.158 0.00 0.00 37.91 3.02
148 149 0.545646 GAGAGGGCTCCTGCTTCATT 59.454 55.000 0.00 0.00 39.59 2.57
203 205 1.073768 GTTCTGCTCGAGAAGGCGAC 61.074 60.000 20.65 12.65 41.58 5.19
224 226 0.395862 CGGTGGCTCCCTAGAGAAGA 60.396 60.000 0.00 0.00 43.39 2.87
238 240 7.846823 TCCCTAGAGAAGAAATAATGTCCTCTT 59.153 37.037 0.00 0.00 32.52 2.85
261 263 1.974875 CAACCCCCGTTTAGGTGGC 60.975 63.158 0.00 0.00 36.19 5.01
283 285 2.878580 CATCTAGCATCATCGGAGAGC 58.121 52.381 0.00 0.00 43.63 4.09
294 296 3.149981 CATCGGAGAGCATGTAGAGGTA 58.850 50.000 0.00 0.00 43.63 3.08
302 304 2.887783 AGCATGTAGAGGTATGTCTCCG 59.112 50.000 0.00 0.00 34.46 4.63
314 316 2.113351 TCTCCGGCGGATCTCGAT 59.887 61.111 31.23 0.00 42.43 3.59
383 385 4.343811 TCGTTTGTGTGTTTACAGGTTG 57.656 40.909 0.00 0.00 37.52 3.77
392 394 5.298276 GTGTGTTTACAGGTTGAATCCTTCA 59.702 40.000 0.00 0.00 37.52 3.02
393 395 6.016276 GTGTGTTTACAGGTTGAATCCTTCAT 60.016 38.462 0.00 0.00 37.19 2.57
400 402 7.682787 ACAGGTTGAATCCTTCATATCTACT 57.317 36.000 0.00 0.00 39.84 2.57
435 438 1.878953 CGGCAGTAGTTGTTCTGGTT 58.121 50.000 0.00 0.00 32.94 3.67
436 439 2.218603 CGGCAGTAGTTGTTCTGGTTT 58.781 47.619 0.00 0.00 32.94 3.27
442 445 2.959507 AGTTGTTCTGGTTTGTTGGC 57.040 45.000 0.00 0.00 0.00 4.52
444 447 1.480545 GTTGTTCTGGTTTGTTGGCCT 59.519 47.619 3.32 0.00 0.00 5.19
481 484 2.293677 CGCCGACTTCCACACTATCTAT 59.706 50.000 0.00 0.00 0.00 1.98
486 489 6.439599 CCGACTTCCACACTATCTATTACAG 58.560 44.000 0.00 0.00 0.00 2.74
488 491 6.913132 CGACTTCCACACTATCTATTACAGTG 59.087 42.308 0.00 0.00 44.20 3.66
499 502 8.812972 ACTATCTATTACAGTGAGTTTTGTCCA 58.187 33.333 0.00 0.00 0.00 4.02
500 503 9.307121 CTATCTATTACAGTGAGTTTTGTCCAG 57.693 37.037 0.00 0.00 0.00 3.86
503 506 3.004752 ACAGTGAGTTTTGTCCAGCTT 57.995 42.857 0.00 0.00 0.00 3.74
512 515 1.266178 TTGTCCAGCTTCGATGAGGA 58.734 50.000 1.89 5.74 0.00 3.71
515 518 2.038426 TGTCCAGCTTCGATGAGGAAAA 59.962 45.455 12.44 4.53 0.00 2.29
518 521 2.355108 CCAGCTTCGATGAGGAAAAGGA 60.355 50.000 1.89 0.00 0.00 3.36
526 529 3.181486 CGATGAGGAAAAGGAGATGACGA 60.181 47.826 0.00 0.00 0.00 4.20
585 588 3.157881 CGCTGGGTGATCTAAGGATCTA 58.842 50.000 7.39 0.00 46.18 1.98
595 598 7.201530 GGTGATCTAAGGATCTAAACGTGTTTG 60.202 40.741 8.19 0.00 46.18 2.93
799 2072 0.833287 ATCTCGCTTACATGCTGGGT 59.167 50.000 0.00 0.00 0.00 4.51
871 2154 3.369366 GCTCTCCTCTTCTTCTCCAAAGG 60.369 52.174 0.00 0.00 0.00 3.11
935 2218 1.037030 GCTTTGGGCGATTCCATCCA 61.037 55.000 0.00 0.00 36.58 3.41
939 2222 1.278302 TGGGCGATTCCATCCAAGGA 61.278 55.000 0.00 0.00 36.21 3.36
940 2223 0.819666 GGGCGATTCCATCCAAGGAC 60.820 60.000 0.00 0.00 37.42 3.85
1184 2467 0.097674 CGCGCTGCTATTTTCTGCTT 59.902 50.000 5.56 0.00 0.00 3.91
1200 2483 1.695242 TGCTTCCGGTTTCTTCCTGTA 59.305 47.619 0.00 0.00 0.00 2.74
1287 2576 8.874744 ATTGCTTCCTCCGTTAGTATAGTATA 57.125 34.615 0.00 0.00 0.00 1.47
1288 2577 8.874744 TTGCTTCCTCCGTTAGTATAGTATAT 57.125 34.615 0.00 0.00 0.00 0.86
1289 2578 9.964354 TTGCTTCCTCCGTTAGTATAGTATATA 57.036 33.333 0.00 0.00 0.00 0.86
1388 2677 1.272807 TGGTAGCCTGGTACCAGTTC 58.727 55.000 34.49 26.11 46.26 3.01
1439 2731 1.562475 GTGCCAGTTGAACCCCCTATA 59.438 52.381 0.00 0.00 0.00 1.31
1440 2732 2.174854 GTGCCAGTTGAACCCCCTATAT 59.825 50.000 0.00 0.00 0.00 0.86
1470 2762 1.765314 ACTGCTTCTTCTGTCTGTGGT 59.235 47.619 0.00 0.00 0.00 4.16
1484 2776 1.674322 GTGGTTGCCTGGTGCGTAT 60.674 57.895 0.00 0.00 45.60 3.06
1503 2795 6.585702 TGCGTATGTTGAATCAAAGATTTTGG 59.414 34.615 0.00 0.00 0.00 3.28
1513 2805 8.108999 TGAATCAAAGATTTTGGGATACTCTCA 58.891 33.333 2.09 0.00 0.00 3.27
1572 2864 9.871238 CTTAAGTTGCTATTAGAAGTTGTCCTA 57.129 33.333 0.00 0.00 0.00 2.94
1583 2875 8.985315 TTAGAAGTTGTCCTAGAATCCGTATA 57.015 34.615 0.00 0.00 0.00 1.47
1671 2964 2.456119 CGTTGGCAGCGATCCAGTC 61.456 63.158 19.39 0.00 34.66 3.51
1696 2990 3.192212 GGCCTTCTATTGCAATATGGCTC 59.808 47.826 32.90 25.66 34.74 4.70
1712 3006 8.944029 CAATATGGCTCCTATTTCAGATGTTAG 58.056 37.037 0.00 0.00 0.00 2.34
1733 3027 8.571336 TGTTAGTTCTGTTAGTAGTGAAGTACC 58.429 37.037 0.00 0.00 0.00 3.34
1839 3133 5.307196 TGGGAGGCAGAAGTAAGGATTATAC 59.693 44.000 0.00 0.00 30.46 1.47
1846 3140 5.921408 CAGAAGTAAGGATTATACCGCTGAC 59.079 44.000 0.00 0.00 31.69 3.51
1954 3248 2.352805 GCCAGGACAAGGTGAGGG 59.647 66.667 0.00 0.00 0.00 4.30
2054 3348 4.274950 TCACCTGTTTGCAGTTACTAAAGC 59.725 41.667 0.00 0.00 41.02 3.51
2297 3591 6.437477 TGGACTGTGTTATCTTCTGTAGATGT 59.563 38.462 7.01 0.00 43.52 3.06
2298 3592 6.754209 GGACTGTGTTATCTTCTGTAGATGTG 59.246 42.308 7.01 0.00 43.52 3.21
2613 3936 5.305902 TGTGAAGTCAGTTCCCACAGTAATA 59.694 40.000 0.00 0.00 33.42 0.98
2857 4184 5.824904 CTTGCTGATAAGCTTGGTGTTAT 57.175 39.130 9.86 0.00 35.49 1.89
2860 4187 6.194796 TGCTGATAAGCTTGGTGTTATTTC 57.805 37.500 9.86 0.00 35.49 2.17
2990 4317 0.554792 CTCAGGGCTGGAATGGGAAT 59.445 55.000 0.00 0.00 0.00 3.01
3026 4353 7.277539 TCAACTTTGCTCTGGTGTTTATTTTTG 59.722 33.333 0.00 0.00 0.00 2.44
3027 4354 6.639563 ACTTTGCTCTGGTGTTTATTTTTGT 58.360 32.000 0.00 0.00 0.00 2.83
3029 4356 5.590530 TGCTCTGGTGTTTATTTTTGTGT 57.409 34.783 0.00 0.00 0.00 3.72
3136 4463 6.039270 TGACACTAACAAGTGCTATTTTGCTT 59.961 34.615 5.47 0.00 43.13 3.91
3137 4464 6.208644 ACACTAACAAGTGCTATTTTGCTTG 58.791 36.000 5.47 0.00 43.13 4.01
3142 4469 0.458370 GTGCTATTTTGCTTGCGGGG 60.458 55.000 0.00 0.00 0.00 5.73
3267 4594 4.211164 TGTTGACATGTCTTTGTAAGCTCG 59.789 41.667 25.55 0.00 0.00 5.03
3291 4618 3.748048 TCTTTGAGCTGTTATCACACTGC 59.252 43.478 0.00 0.00 40.85 4.40
3327 4654 6.983474 TCAATGATTGAATGTACACACGAT 57.017 33.333 5.21 0.36 36.59 3.73
3332 4659 6.598525 TGATTGAATGTACACACGATGAAAC 58.401 36.000 0.00 0.00 0.00 2.78
3356 4684 8.995027 ACCCTTTATGCTATGTGAAAATGATA 57.005 30.769 0.00 0.00 0.00 2.15
3371 4699 2.988010 TGATACCATGTCAGGTGCTC 57.012 50.000 0.00 0.00 43.14 4.26
3372 4700 1.486310 TGATACCATGTCAGGTGCTCC 59.514 52.381 0.00 0.00 43.14 4.70
3373 4701 1.765314 GATACCATGTCAGGTGCTCCT 59.235 52.381 0.18 0.18 46.37 3.69
3374 4702 7.666423 AATGATACCATGTCAGGTGCTCCTG 62.666 48.000 25.75 25.75 45.92 3.86
3401 4729 3.997681 GAGCCTGATGAGTGATGATGATG 59.002 47.826 0.00 0.00 0.00 3.07
3402 4730 3.646637 AGCCTGATGAGTGATGATGATGA 59.353 43.478 0.00 0.00 0.00 2.92
3403 4731 4.287326 AGCCTGATGAGTGATGATGATGAT 59.713 41.667 0.00 0.00 0.00 2.45
3427 4755 1.616159 CCCTGGTTTTGTGAACCGAT 58.384 50.000 3.74 0.00 43.15 4.18
3439 4767 5.017294 TGTGAACCGATATGTATTCTGCA 57.983 39.130 0.00 0.00 0.00 4.41
3459 4787 5.185454 TGCACGTGATTAATCTCATTCCTT 58.815 37.500 22.23 0.00 0.00 3.36
3460 4788 5.294306 TGCACGTGATTAATCTCATTCCTTC 59.706 40.000 22.23 0.00 0.00 3.46
3461 4789 5.525378 GCACGTGATTAATCTCATTCCTTCT 59.475 40.000 22.23 0.00 0.00 2.85
3498 4826 2.816087 TCTCTAGTTAACGGACGTTGCT 59.184 45.455 19.19 17.44 38.92 3.91
3525 4853 5.239525 GTGTTTGGTATCTGAGGATTATGGC 59.760 44.000 0.00 0.00 33.71 4.40
3651 5008 9.116067 TGGTTAAAATGTAGCTATAATCACACC 57.884 33.333 0.00 0.98 0.00 4.16
3652 5009 8.565416 GGTTAAAATGTAGCTATAATCACACCC 58.435 37.037 0.00 0.00 0.00 4.61
3653 5010 8.565416 GTTAAAATGTAGCTATAATCACACCCC 58.435 37.037 0.00 0.00 0.00 4.95
3654 5011 6.515512 AAATGTAGCTATAATCACACCCCT 57.484 37.500 0.00 0.00 0.00 4.79
3655 5012 6.515512 AATGTAGCTATAATCACACCCCTT 57.484 37.500 0.00 0.00 0.00 3.95
3656 5013 7.626999 AATGTAGCTATAATCACACCCCTTA 57.373 36.000 0.00 0.00 0.00 2.69
3691 5048 9.874205 CAAAATCACAACATAATTATTGGACCT 57.126 29.630 0.00 0.00 0.00 3.85
3700 5057 7.004691 ACATAATTATTGGACCTCTTTAGCCC 58.995 38.462 0.00 0.00 0.00 5.19
3714 5071 0.818938 TAGCCCGCGAATGTTCACTA 59.181 50.000 8.23 0.00 0.00 2.74
3716 5073 0.739813 GCCCGCGAATGTTCACTACT 60.740 55.000 8.23 0.00 0.00 2.57
3717 5074 0.999406 CCCGCGAATGTTCACTACTG 59.001 55.000 8.23 0.00 0.00 2.74
3718 5075 0.999406 CCGCGAATGTTCACTACTGG 59.001 55.000 8.23 0.00 0.00 4.00
3740 5097 2.620242 GGATGGCATTTGCGAATGTTT 58.380 42.857 24.39 11.86 43.67 2.83
3741 5098 3.430098 GGGATGGCATTTGCGAATGTTTA 60.430 43.478 24.39 13.33 43.67 2.01
3744 5101 5.294060 GGATGGCATTTGCGAATGTTTATTT 59.706 36.000 24.39 7.28 43.67 1.40
3745 5102 6.478344 GGATGGCATTTGCGAATGTTTATTTA 59.522 34.615 24.39 7.13 43.67 1.40
3746 5103 7.171337 GGATGGCATTTGCGAATGTTTATTTAT 59.829 33.333 24.39 10.72 43.67 1.40
3748 5105 6.257411 TGGCATTTGCGAATGTTTATTTATGG 59.743 34.615 24.39 0.00 43.67 2.74
3749 5106 6.128729 GCATTTGCGAATGTTTATTTATGGC 58.871 36.000 24.39 5.22 43.67 4.40
3750 5107 6.238049 GCATTTGCGAATGTTTATTTATGGCA 60.238 34.615 24.39 0.00 43.67 4.92
3751 5108 7.675870 GCATTTGCGAATGTTTATTTATGGCAA 60.676 33.333 24.39 0.00 43.67 4.52
3752 5109 7.658179 TTTGCGAATGTTTATTTATGGCAAA 57.342 28.000 3.53 3.53 0.00 3.68
3754 5111 7.840342 TGCGAATGTTTATTTATGGCAAATT 57.160 28.000 0.00 0.00 0.00 1.82
3756 5113 7.763528 TGCGAATGTTTATTTATGGCAAATTCT 59.236 29.630 0.00 0.00 0.00 2.40
3757 5114 8.603181 GCGAATGTTTATTTATGGCAAATTCTT 58.397 29.630 0.00 0.00 0.00 2.52
3772 5129 8.359642 TGGCAAATTCTTTAGAATATACATGGC 58.640 33.333 5.47 11.30 43.41 4.40
3773 5130 8.359642 GGCAAATTCTTTAGAATATACATGGCA 58.640 33.333 5.47 0.00 43.41 4.92
3774 5131 9.748708 GCAAATTCTTTAGAATATACATGGCAA 57.251 29.630 5.47 0.00 43.41 4.52
3780 5137 9.866655 TCTTTAGAATATACATGGCAATTTCCT 57.133 29.630 0.00 0.00 0.00 3.36
3783 5140 9.639563 TTAGAATATACATGGCAATTTCCTTCA 57.360 29.630 0.00 0.00 0.00 3.02
3784 5141 8.174733 AGAATATACATGGCAATTTCCTTCAG 57.825 34.615 0.00 0.00 0.00 3.02
3785 5142 8.000709 AGAATATACATGGCAATTTCCTTCAGA 58.999 33.333 0.00 0.00 0.00 3.27
3786 5143 8.537728 AATATACATGGCAATTTCCTTCAGAA 57.462 30.769 0.00 0.00 0.00 3.02
3796 5153 2.971660 TCCTTCAGAAACACGTGACA 57.028 45.000 25.01 0.00 0.00 3.58
3797 5154 3.254470 TCCTTCAGAAACACGTGACAA 57.746 42.857 25.01 4.19 0.00 3.18
3798 5155 3.601435 TCCTTCAGAAACACGTGACAAA 58.399 40.909 25.01 10.20 0.00 2.83
3799 5156 4.196193 TCCTTCAGAAACACGTGACAAAT 58.804 39.130 25.01 2.64 0.00 2.32
3800 5157 4.638421 TCCTTCAGAAACACGTGACAAATT 59.362 37.500 25.01 8.66 0.00 1.82
3801 5158 5.818336 TCCTTCAGAAACACGTGACAAATTA 59.182 36.000 25.01 1.55 0.00 1.40
3802 5159 6.485313 TCCTTCAGAAACACGTGACAAATTAT 59.515 34.615 25.01 3.52 0.00 1.28
3803 5160 6.578545 CCTTCAGAAACACGTGACAAATTATG 59.421 38.462 25.01 14.86 0.00 1.90
3804 5161 5.996219 TCAGAAACACGTGACAAATTATGG 58.004 37.500 25.01 1.03 0.00 2.74
3805 5162 4.616802 CAGAAACACGTGACAAATTATGGC 59.383 41.667 25.01 0.00 37.68 4.40
3834 5191 4.563061 AGGATTTTGCTGTGAAAGATTGC 58.437 39.130 0.00 0.00 0.00 3.56
3835 5192 4.282703 AGGATTTTGCTGTGAAAGATTGCT 59.717 37.500 0.00 0.00 0.00 3.91
3836 5193 4.387862 GGATTTTGCTGTGAAAGATTGCTG 59.612 41.667 0.00 0.00 0.00 4.41
3838 5195 3.358707 TTGCTGTGAAAGATTGCTGTG 57.641 42.857 0.00 0.00 0.00 3.66
3840 5197 2.689471 TGCTGTGAAAGATTGCTGTGTT 59.311 40.909 0.00 0.00 0.00 3.32
3841 5198 3.243168 TGCTGTGAAAGATTGCTGTGTTC 60.243 43.478 0.00 0.00 0.00 3.18
3842 5199 3.548587 CTGTGAAAGATTGCTGTGTTCG 58.451 45.455 0.00 0.00 0.00 3.95
3845 5202 2.031769 TGAAAGATTGCTGTGTTCGCTG 60.032 45.455 0.00 0.00 0.00 5.18
3846 5203 1.882912 AAGATTGCTGTGTTCGCTGA 58.117 45.000 0.00 0.00 0.00 4.26
3847 5204 1.882912 AGATTGCTGTGTTCGCTGAA 58.117 45.000 0.00 0.00 0.00 3.02
3849 5206 2.225019 AGATTGCTGTGTTCGCTGAAAG 59.775 45.455 0.00 0.00 0.00 2.62
3850 5207 0.662619 TTGCTGTGTTCGCTGAAAGG 59.337 50.000 0.00 0.00 0.00 3.11
3851 5208 0.179059 TGCTGTGTTCGCTGAAAGGA 60.179 50.000 0.00 0.00 0.00 3.36
3852 5209 0.944386 GCTGTGTTCGCTGAAAGGAA 59.056 50.000 0.00 0.00 0.00 3.36
3853 5210 1.537202 GCTGTGTTCGCTGAAAGGAAT 59.463 47.619 0.00 0.00 0.00 3.01
3854 5211 2.030805 GCTGTGTTCGCTGAAAGGAATT 60.031 45.455 0.00 0.00 0.00 2.17
3855 5212 3.558505 CTGTGTTCGCTGAAAGGAATTG 58.441 45.455 0.00 0.00 0.00 2.32
3856 5213 2.948979 TGTGTTCGCTGAAAGGAATTGT 59.051 40.909 0.00 0.00 0.00 2.71
3857 5214 3.003275 TGTGTTCGCTGAAAGGAATTGTC 59.997 43.478 0.00 0.00 0.00 3.18
3858 5215 3.003275 GTGTTCGCTGAAAGGAATTGTCA 59.997 43.478 0.00 0.00 0.00 3.58
3859 5216 3.820467 TGTTCGCTGAAAGGAATTGTCAT 59.180 39.130 0.00 0.00 0.00 3.06
3860 5217 5.000591 TGTTCGCTGAAAGGAATTGTCATA 58.999 37.500 0.00 0.00 0.00 2.15
3863 5220 6.363577 TCGCTGAAAGGAATTGTCATATTC 57.636 37.500 0.00 0.00 34.48 1.75
3869 5226 3.904136 GGAATTGTCATATTCCCGCTG 57.096 47.619 12.33 0.00 45.16 5.18
3872 5229 2.346766 TTGTCATATTCCCGCTGCAT 57.653 45.000 0.00 0.00 0.00 3.96
3873 5230 3.483808 TTGTCATATTCCCGCTGCATA 57.516 42.857 0.00 0.00 0.00 3.14
3874 5231 3.483808 TGTCATATTCCCGCTGCATAA 57.516 42.857 0.00 0.00 0.00 1.90
3875 5232 3.814625 TGTCATATTCCCGCTGCATAAA 58.185 40.909 0.00 0.00 0.00 1.40
3876 5233 4.203226 TGTCATATTCCCGCTGCATAAAA 58.797 39.130 0.00 0.00 0.00 1.52
3877 5234 4.036262 TGTCATATTCCCGCTGCATAAAAC 59.964 41.667 0.00 0.00 0.00 2.43
3878 5235 3.568007 TCATATTCCCGCTGCATAAAACC 59.432 43.478 0.00 0.00 0.00 3.27
3879 5236 1.111277 ATTCCCGCTGCATAAAACCC 58.889 50.000 0.00 0.00 0.00 4.11
3880 5237 1.309499 TTCCCGCTGCATAAAACCCG 61.309 55.000 0.00 0.00 0.00 5.28
3881 5238 2.770589 CCCGCTGCATAAAACCCGG 61.771 63.158 0.00 0.00 35.74 5.73
3882 5239 2.043980 CCGCTGCATAAAACCCGGT 61.044 57.895 0.00 0.00 0.00 5.28
3883 5240 1.136565 CGCTGCATAAAACCCGGTG 59.863 57.895 0.00 0.00 0.00 4.94
3885 5242 0.170339 GCTGCATAAAACCCGGTGAC 59.830 55.000 0.00 0.00 0.00 3.67
3886 5243 1.529226 CTGCATAAAACCCGGTGACA 58.471 50.000 0.00 0.00 0.00 3.58
3887 5244 1.883275 CTGCATAAAACCCGGTGACAA 59.117 47.619 0.00 0.00 0.00 3.18
3888 5245 2.294791 CTGCATAAAACCCGGTGACAAA 59.705 45.455 0.00 0.00 0.00 2.83
3889 5246 2.034812 TGCATAAAACCCGGTGACAAAC 59.965 45.455 0.00 0.00 0.00 2.93
3890 5247 2.918968 GCATAAAACCCGGTGACAAACG 60.919 50.000 0.00 0.00 0.00 3.60
3891 5248 2.035530 TAAAACCCGGTGACAAACGT 57.964 45.000 0.00 0.00 0.00 3.99
3892 5249 1.175654 AAAACCCGGTGACAAACGTT 58.824 45.000 0.00 0.00 0.00 3.99
3894 5251 1.430707 AACCCGGTGACAAACGTTCG 61.431 55.000 0.00 0.00 0.00 3.95
3895 5252 2.247267 CCGGTGACAAACGTTCGC 59.753 61.111 0.00 0.00 0.00 4.70
3896 5253 2.526993 CCGGTGACAAACGTTCGCA 61.527 57.895 0.00 0.00 0.00 5.10
3897 5254 1.348938 CGGTGACAAACGTTCGCAA 59.651 52.632 0.00 0.00 0.00 4.85
3898 5255 0.247735 CGGTGACAAACGTTCGCAAA 60.248 50.000 0.00 0.00 0.00 3.68
3899 5256 1.595976 CGGTGACAAACGTTCGCAAAT 60.596 47.619 0.00 0.00 0.00 2.32
3900 5257 1.778591 GGTGACAAACGTTCGCAAATG 59.221 47.619 0.00 0.00 0.00 2.32
3902 5259 0.775861 GACAAACGTTCGCAAATGCC 59.224 50.000 0.00 0.00 37.91 4.40
3903 5260 0.101399 ACAAACGTTCGCAAATGCCA 59.899 45.000 0.00 0.00 37.91 4.92
3904 5261 1.269517 ACAAACGTTCGCAAATGCCAT 60.270 42.857 0.00 0.00 37.91 4.40
3905 5262 1.386412 CAAACGTTCGCAAATGCCATC 59.614 47.619 0.00 0.00 37.91 3.51
3906 5263 0.109319 AACGTTCGCAAATGCCATCC 60.109 50.000 0.00 0.00 37.91 3.51
3908 5265 1.889454 GTTCGCAAATGCCATCCCA 59.111 52.632 0.00 0.00 37.91 4.37
3909 5266 0.179129 GTTCGCAAATGCCATCCCAG 60.179 55.000 0.00 0.00 37.91 4.45
3910 5267 1.947597 TTCGCAAATGCCATCCCAGC 61.948 55.000 0.00 0.00 37.91 4.85
3911 5268 2.712944 CGCAAATGCCATCCCAGCA 61.713 57.895 0.00 0.00 45.94 4.41
3913 5270 0.036199 GCAAATGCCATCCCAGCAAA 60.036 50.000 0.00 0.00 44.83 3.68
3914 5271 1.729284 CAAATGCCATCCCAGCAAAC 58.271 50.000 0.00 0.00 44.83 2.93
3915 5272 0.247185 AAATGCCATCCCAGCAAACG 59.753 50.000 0.00 0.00 44.83 3.60
3916 5273 0.899717 AATGCCATCCCAGCAAACGT 60.900 50.000 0.00 0.00 44.83 3.99
3917 5274 0.899717 ATGCCATCCCAGCAAACGTT 60.900 50.000 0.00 0.00 44.83 3.99
3919 5276 1.501741 CCATCCCAGCAAACGTTCG 59.498 57.895 0.00 0.00 0.00 3.95
3920 5277 1.154225 CATCCCAGCAAACGTTCGC 60.154 57.895 2.15 2.15 0.00 4.70
3921 5278 1.302511 ATCCCAGCAAACGTTCGCT 60.303 52.632 8.19 8.19 39.66 4.93
3922 5279 0.036765 ATCCCAGCAAACGTTCGCTA 60.037 50.000 14.38 0.00 36.50 4.26
3923 5280 0.249953 TCCCAGCAAACGTTCGCTAA 60.250 50.000 14.38 0.00 36.50 3.09
3924 5281 0.589223 CCCAGCAAACGTTCGCTAAA 59.411 50.000 14.38 0.00 36.50 1.85
3925 5282 1.199097 CCCAGCAAACGTTCGCTAAAT 59.801 47.619 14.38 0.00 36.50 1.40
3926 5283 2.351350 CCCAGCAAACGTTCGCTAAATT 60.351 45.455 14.38 0.00 36.50 1.82
3927 5284 2.656422 CCAGCAAACGTTCGCTAAATTG 59.344 45.455 14.38 1.72 36.50 2.32
3929 5286 2.047769 GCAAACGTTCGCTAAATTGCA 58.952 42.857 3.41 0.00 41.93 4.08
3931 5288 3.121113 GCAAACGTTCGCTAAATTGCATT 59.879 39.130 3.41 0.00 41.93 3.56
3932 5289 4.617328 CAAACGTTCGCTAAATTGCATTG 58.383 39.130 0.00 0.00 0.00 2.82
3934 5291 2.095263 ACGTTCGCTAAATTGCATTGCT 60.095 40.909 10.49 0.00 0.00 3.91
3935 5292 3.126171 ACGTTCGCTAAATTGCATTGCTA 59.874 39.130 10.49 2.21 0.00 3.49
3937 5294 3.691049 TCGCTAAATTGCATTGCTACC 57.309 42.857 10.49 0.00 0.00 3.18
3938 5295 2.031560 TCGCTAAATTGCATTGCTACCG 59.968 45.455 10.49 3.64 0.00 4.02
3939 5296 2.223249 CGCTAAATTGCATTGCTACCGT 60.223 45.455 10.49 0.00 0.00 4.83
3940 5297 3.001838 CGCTAAATTGCATTGCTACCGTA 59.998 43.478 10.49 0.00 0.00 4.02
3941 5298 4.319477 CGCTAAATTGCATTGCTACCGTAT 60.319 41.667 10.49 0.00 0.00 3.06
3971 6046 5.007430 CAGGAGAATCACAACATATGTCAGC 59.993 44.000 9.23 0.00 41.46 4.26
3972 6047 4.025396 GGAGAATCACAACATATGTCAGCG 60.025 45.833 9.23 0.00 41.46 5.18
3973 6048 4.758688 AGAATCACAACATATGTCAGCGA 58.241 39.130 9.23 5.23 41.46 4.93
3974 6049 4.568359 AGAATCACAACATATGTCAGCGAC 59.432 41.667 9.23 2.32 41.46 5.19
3975 6050 3.592898 TCACAACATATGTCAGCGACT 57.407 42.857 9.23 0.00 41.46 4.18
3976 6051 4.712122 TCACAACATATGTCAGCGACTA 57.288 40.909 9.23 2.04 41.46 2.59
3977 6052 4.421058 TCACAACATATGTCAGCGACTAC 58.579 43.478 9.23 0.00 41.46 2.73
3978 6053 3.240631 CACAACATATGTCAGCGACTACG 59.759 47.826 9.23 0.00 41.46 3.51
3979 6054 2.776312 ACATATGTCAGCGACTACGG 57.224 50.000 1.41 1.76 40.15 4.02
3980 6055 1.269102 ACATATGTCAGCGACTACGGC 60.269 52.381 1.41 0.00 40.15 5.68
3981 6056 0.040336 ATATGTCAGCGACTACGGCG 60.040 55.000 4.80 4.80 40.15 6.46
3987 6062 3.679326 GCGACTACGGCGCGAATC 61.679 66.667 12.10 0.00 45.27 2.52
3988 6063 2.277692 CGACTACGGCGCGAATCA 60.278 61.111 12.10 0.00 35.72 2.57
3989 6064 1.870458 CGACTACGGCGCGAATCAA 60.870 57.895 12.10 0.00 35.72 2.57
3990 6065 1.629504 GACTACGGCGCGAATCAAC 59.370 57.895 12.10 0.00 0.00 3.18
3991 6066 1.749609 GACTACGGCGCGAATCAACC 61.750 60.000 12.10 0.00 0.00 3.77
3992 6067 1.518572 CTACGGCGCGAATCAACCT 60.519 57.895 12.10 0.00 0.00 3.50
3993 6068 1.752501 CTACGGCGCGAATCAACCTG 61.753 60.000 12.10 0.00 0.00 4.00
3994 6069 2.495366 TACGGCGCGAATCAACCTGT 62.495 55.000 12.10 3.47 0.00 4.00
3995 6070 2.480555 GGCGCGAATCAACCTGTG 59.519 61.111 12.10 0.00 0.00 3.66
3996 6071 2.480555 GCGCGAATCAACCTGTGG 59.519 61.111 12.10 0.00 0.00 4.17
3997 6072 2.325082 GCGCGAATCAACCTGTGGT 61.325 57.895 12.10 0.00 37.65 4.16
4007 6082 2.525105 AACCTGTGGTTGAGTTGGTT 57.475 45.000 0.71 0.00 45.07 3.67
4008 6083 3.655615 AACCTGTGGTTGAGTTGGTTA 57.344 42.857 0.71 0.00 45.07 2.85
4009 6084 3.208747 ACCTGTGGTTGAGTTGGTTAG 57.791 47.619 0.00 0.00 27.29 2.34
4010 6085 2.158667 ACCTGTGGTTGAGTTGGTTAGG 60.159 50.000 0.00 0.00 27.29 2.69
4011 6086 2.158667 CCTGTGGTTGAGTTGGTTAGGT 60.159 50.000 0.00 0.00 0.00 3.08
4012 6087 2.878406 CTGTGGTTGAGTTGGTTAGGTG 59.122 50.000 0.00 0.00 0.00 4.00
4013 6088 2.227194 GTGGTTGAGTTGGTTAGGTGG 58.773 52.381 0.00 0.00 0.00 4.61
4014 6089 2.128535 TGGTTGAGTTGGTTAGGTGGA 58.871 47.619 0.00 0.00 0.00 4.02
4015 6090 2.158726 TGGTTGAGTTGGTTAGGTGGAC 60.159 50.000 0.00 0.00 0.00 4.02
4016 6091 2.158726 GGTTGAGTTGGTTAGGTGGACA 60.159 50.000 0.00 0.00 0.00 4.02
4017 6092 3.139077 GTTGAGTTGGTTAGGTGGACAG 58.861 50.000 0.00 0.00 0.00 3.51
4018 6093 2.404559 TGAGTTGGTTAGGTGGACAGT 58.595 47.619 0.00 0.00 0.00 3.55
4019 6094 2.104111 TGAGTTGGTTAGGTGGACAGTG 59.896 50.000 0.00 0.00 0.00 3.66
4020 6095 1.420138 AGTTGGTTAGGTGGACAGTGG 59.580 52.381 0.00 0.00 0.00 4.00
4021 6096 1.142262 GTTGGTTAGGTGGACAGTGGT 59.858 52.381 0.00 0.00 0.00 4.16
4022 6097 2.369532 GTTGGTTAGGTGGACAGTGGTA 59.630 50.000 0.00 0.00 0.00 3.25
4023 6098 2.910544 TGGTTAGGTGGACAGTGGTAT 58.089 47.619 0.00 0.00 0.00 2.73
4024 6099 2.835764 TGGTTAGGTGGACAGTGGTATC 59.164 50.000 0.00 0.00 0.00 2.24
4025 6100 2.169978 GGTTAGGTGGACAGTGGTATCC 59.830 54.545 0.00 0.00 35.37 2.59
4026 6101 2.169978 GTTAGGTGGACAGTGGTATCCC 59.830 54.545 0.00 0.00 33.69 3.85
4027 6102 0.620700 AGGTGGACAGTGGTATCCCC 60.621 60.000 0.00 0.00 33.69 4.81
4028 6103 0.912487 GGTGGACAGTGGTATCCCCA 60.912 60.000 0.00 0.00 42.51 4.96
4035 6110 3.844063 TGGTATCCCCAACCCACC 58.156 61.111 0.00 0.00 41.50 4.61
4036 6111 1.151565 TGGTATCCCCAACCCACCA 60.152 57.895 0.00 0.00 41.50 4.17
4037 6112 1.211567 TGGTATCCCCAACCCACCAG 61.212 60.000 0.00 0.00 41.50 4.00
4038 6113 1.613061 GTATCCCCAACCCACCAGG 59.387 63.158 0.00 0.00 43.78 4.45
4054 6129 3.363787 AGGGTTCAAATCCTGGTGC 57.636 52.632 0.00 0.00 38.36 5.01
4055 6130 0.779997 AGGGTTCAAATCCTGGTGCT 59.220 50.000 0.00 0.00 38.36 4.40
4056 6131 1.177401 GGGTTCAAATCCTGGTGCTC 58.823 55.000 0.00 0.00 0.00 4.26
4057 6132 0.804989 GGTTCAAATCCTGGTGCTCG 59.195 55.000 0.00 0.00 0.00 5.03
4058 6133 0.169009 GTTCAAATCCTGGTGCTCGC 59.831 55.000 0.00 0.00 0.00 5.03
4059 6134 0.250684 TTCAAATCCTGGTGCTCGCA 60.251 50.000 0.00 0.00 0.00 5.10
4060 6135 0.035152 TCAAATCCTGGTGCTCGCAT 60.035 50.000 0.00 0.00 0.00 4.73
4061 6136 0.813184 CAAATCCTGGTGCTCGCATT 59.187 50.000 0.00 0.00 0.00 3.56
4062 6137 2.016318 CAAATCCTGGTGCTCGCATTA 58.984 47.619 0.00 0.00 0.00 1.90
4063 6138 2.620115 CAAATCCTGGTGCTCGCATTAT 59.380 45.455 0.00 0.00 0.00 1.28
4064 6139 2.645838 ATCCTGGTGCTCGCATTATT 57.354 45.000 0.00 0.00 0.00 1.40
4065 6140 1.953559 TCCTGGTGCTCGCATTATTC 58.046 50.000 0.00 0.00 0.00 1.75
4066 6141 0.947244 CCTGGTGCTCGCATTATTCC 59.053 55.000 0.00 0.00 0.00 3.01
4067 6142 1.475751 CCTGGTGCTCGCATTATTCCT 60.476 52.381 0.00 0.00 0.00 3.36
4068 6143 1.600957 CTGGTGCTCGCATTATTCCTG 59.399 52.381 0.00 0.00 0.00 3.86
4069 6144 0.947244 GGTGCTCGCATTATTCCTGG 59.053 55.000 0.00 0.00 0.00 4.45
4070 6145 1.475034 GGTGCTCGCATTATTCCTGGA 60.475 52.381 0.00 0.00 0.00 3.86
4071 6146 2.498167 GTGCTCGCATTATTCCTGGAT 58.502 47.619 0.00 0.00 0.00 3.41
4072 6147 2.880890 GTGCTCGCATTATTCCTGGATT 59.119 45.455 0.00 0.00 0.00 3.01
4073 6148 3.316308 GTGCTCGCATTATTCCTGGATTT 59.684 43.478 0.00 0.00 0.00 2.17
4074 6149 4.515191 GTGCTCGCATTATTCCTGGATTTA 59.485 41.667 0.00 0.00 0.00 1.40
4075 6150 5.182001 GTGCTCGCATTATTCCTGGATTTAT 59.818 40.000 0.00 0.00 0.00 1.40
4076 6151 5.769662 TGCTCGCATTATTCCTGGATTTATT 59.230 36.000 0.00 0.00 0.00 1.40
4077 6152 6.265196 TGCTCGCATTATTCCTGGATTTATTT 59.735 34.615 0.00 0.00 0.00 1.40
4078 6153 6.803807 GCTCGCATTATTCCTGGATTTATTTC 59.196 38.462 0.00 0.00 0.00 2.17
4079 6154 7.522073 GCTCGCATTATTCCTGGATTTATTTCA 60.522 37.037 0.00 0.00 0.00 2.69
4080 6155 7.874940 TCGCATTATTCCTGGATTTATTTCAG 58.125 34.615 0.00 0.00 0.00 3.02
4081 6156 7.040478 TCGCATTATTCCTGGATTTATTTCAGG 60.040 37.037 0.00 0.00 46.91 3.86
4089 6164 6.076981 CTGGATTTATTTCAGGATTTCCGG 57.923 41.667 0.00 0.00 42.08 5.14
4090 6165 4.340950 TGGATTTATTTCAGGATTTCCGGC 59.659 41.667 0.00 0.00 42.08 6.13
4091 6166 4.537015 GATTTATTTCAGGATTTCCGGCG 58.463 43.478 0.00 0.00 42.08 6.46
4092 6167 2.992124 TATTTCAGGATTTCCGGCGA 57.008 45.000 9.30 0.00 42.08 5.54
4093 6168 2.348411 ATTTCAGGATTTCCGGCGAT 57.652 45.000 9.30 0.00 42.08 4.58
4094 6169 1.378531 TTTCAGGATTTCCGGCGATG 58.621 50.000 9.30 0.00 42.08 3.84
4095 6170 1.095228 TTCAGGATTTCCGGCGATGC 61.095 55.000 9.30 0.00 42.08 3.91
4096 6171 2.588877 AGGATTTCCGGCGATGCG 60.589 61.111 9.30 0.00 42.08 4.73
4107 6182 4.513519 CGATGCGCTTTAGTGGGA 57.486 55.556 9.73 0.00 0.00 4.37
4108 6183 2.301505 CGATGCGCTTTAGTGGGAG 58.698 57.895 9.73 0.00 0.00 4.30
4109 6184 1.154205 CGATGCGCTTTAGTGGGAGG 61.154 60.000 9.73 0.00 0.00 4.30
4110 6185 0.178068 GATGCGCTTTAGTGGGAGGA 59.822 55.000 9.73 0.00 0.00 3.71
4111 6186 0.179000 ATGCGCTTTAGTGGGAGGAG 59.821 55.000 9.73 0.00 0.00 3.69
4112 6187 0.902984 TGCGCTTTAGTGGGAGGAGA 60.903 55.000 9.73 0.00 0.00 3.71
4113 6188 0.460459 GCGCTTTAGTGGGAGGAGAC 60.460 60.000 0.00 0.00 0.00 3.36
4114 6189 0.179134 CGCTTTAGTGGGAGGAGACG 60.179 60.000 0.00 0.00 0.00 4.18
4115 6190 0.896226 GCTTTAGTGGGAGGAGACGT 59.104 55.000 0.00 0.00 0.00 4.34
4116 6191 1.275573 GCTTTAGTGGGAGGAGACGTT 59.724 52.381 0.00 0.00 0.00 3.99
4117 6192 2.674462 GCTTTAGTGGGAGGAGACGTTC 60.674 54.545 0.00 0.00 0.00 3.95
4138 6213 2.515290 TCGATGACGAGGCGCCTA 60.515 61.111 32.97 15.35 43.81 3.93
4139 6214 2.353607 CGATGACGAGGCGCCTAC 60.354 66.667 32.97 23.37 42.66 3.18
4140 6215 2.353607 GATGACGAGGCGCCTACG 60.354 66.667 32.97 32.67 44.07 3.51
4141 6216 3.825833 GATGACGAGGCGCCTACGG 62.826 68.421 34.97 27.37 40.57 4.02
4143 6218 4.849329 GACGAGGCGCCTACGGTG 62.849 72.222 34.97 23.88 40.57 4.94
4145 6220 4.849329 CGAGGCGCCTACGGTGAC 62.849 72.222 32.97 14.51 42.50 3.67
4148 6223 2.508663 GGCGCCTACGGTGACTTC 60.509 66.667 22.15 0.00 38.38 3.01
4149 6224 2.879462 GCGCCTACGGTGACTTCG 60.879 66.667 0.00 0.00 40.57 3.79
4150 6225 2.564975 CGCCTACGGTGACTTCGT 59.435 61.111 0.00 0.00 43.64 3.85
4151 6226 1.796151 CGCCTACGGTGACTTCGTA 59.204 57.895 0.00 0.00 41.38 3.43
4152 6227 0.168788 CGCCTACGGTGACTTCGTAA 59.831 55.000 0.00 0.00 41.62 3.18
4153 6228 1.401409 CGCCTACGGTGACTTCGTAAA 60.401 52.381 0.00 0.00 41.62 2.01
4154 6229 2.733227 CGCCTACGGTGACTTCGTAAAT 60.733 50.000 0.00 0.00 41.62 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.579201 CCATCAAGGGTCGCGAGT 59.421 61.111 10.24 0.00 0.00 4.18
10 11 0.109342 ATCGCCTTAGCCATCAAGGG 59.891 55.000 3.47 0.00 42.47 3.95
11 12 1.972872 AATCGCCTTAGCCATCAAGG 58.027 50.000 0.00 0.00 44.61 3.61
17 18 1.140252 GAACCCTAATCGCCTTAGCCA 59.860 52.381 0.51 0.00 36.30 4.75
72 73 2.290896 CCCTAAGGCCACAAGACATGAA 60.291 50.000 5.01 0.00 0.00 2.57
73 74 1.281867 CCCTAAGGCCACAAGACATGA 59.718 52.381 5.01 0.00 0.00 3.07
127 128 3.731653 GAAGCAGGAGCCCTCTCGC 62.732 68.421 0.00 0.00 43.56 5.03
128 129 1.684386 ATGAAGCAGGAGCCCTCTCG 61.684 60.000 0.00 0.00 43.56 4.04
163 164 3.283751 CACAGACCCTAACCAAACACAA 58.716 45.455 0.00 0.00 0.00 3.33
180 182 1.707632 CCTTCTCGAGCAGAACACAG 58.292 55.000 14.03 0.00 36.08 3.66
203 205 3.905678 CTCTAGGGAGCCACCGCG 61.906 72.222 0.00 0.00 41.18 6.46
210 212 6.042666 AGGACATTATTTCTTCTCTAGGGAGC 59.957 42.308 0.00 0.00 39.31 4.70
224 226 5.510430 GGTTGGGAGAAGAGGACATTATTT 58.490 41.667 0.00 0.00 0.00 1.40
238 240 1.202769 CCTAAACGGGGGTTGGGAGA 61.203 60.000 0.00 0.00 0.00 3.71
261 263 1.200948 TCTCCGATGATGCTAGATGCG 59.799 52.381 0.00 0.00 46.63 4.73
283 285 2.029828 GCCGGAGACATACCTCTACATG 60.030 54.545 5.05 0.00 33.79 3.21
294 296 2.556459 CGAGATCCGCCGGAGACAT 61.556 63.158 13.12 0.00 34.05 3.06
302 304 1.151668 CAAATCCATCGAGATCCGCC 58.848 55.000 0.00 0.00 38.37 6.13
314 316 1.004320 CCGACACCGACCAAATCCA 60.004 57.895 0.00 0.00 38.22 3.41
367 369 4.787551 AGGATTCAACCTGTAAACACACA 58.212 39.130 0.00 0.00 39.01 3.72
392 394 7.030165 CGCCGATGACAGAAAATAGTAGATAT 58.970 38.462 0.00 0.00 0.00 1.63
393 395 6.379386 CGCCGATGACAGAAAATAGTAGATA 58.621 40.000 0.00 0.00 0.00 1.98
400 402 1.295792 GCCGCCGATGACAGAAAATA 58.704 50.000 0.00 0.00 0.00 1.40
442 445 3.338250 TGCTAGGGCCCCACAAGG 61.338 66.667 21.43 3.38 37.74 3.61
444 447 4.028490 CGTGCTAGGGCCCCACAA 62.028 66.667 24.20 5.68 37.74 3.33
454 457 1.805945 GTGGAAGTCGGCGTGCTAG 60.806 63.158 6.85 0.00 0.00 3.42
481 484 4.150897 AGCTGGACAAAACTCACTGTAA 57.849 40.909 0.00 0.00 0.00 2.41
486 489 2.210116 TCGAAGCTGGACAAAACTCAC 58.790 47.619 0.00 0.00 0.00 3.51
488 491 3.067106 TCATCGAAGCTGGACAAAACTC 58.933 45.455 0.00 0.00 0.00 3.01
499 502 2.834549 TCTCCTTTTCCTCATCGAAGCT 59.165 45.455 0.00 0.00 0.00 3.74
500 503 3.252974 TCTCCTTTTCCTCATCGAAGC 57.747 47.619 0.00 0.00 0.00 3.86
503 506 3.181486 CGTCATCTCCTTTTCCTCATCGA 60.181 47.826 0.00 0.00 0.00 3.59
512 515 1.978542 CGTCGTCGTCATCTCCTTTT 58.021 50.000 0.00 0.00 0.00 2.27
515 518 2.038837 TGCGTCGTCGTCATCTCCT 61.039 57.895 3.66 0.00 39.49 3.69
518 521 1.863662 AAGGTGCGTCGTCGTCATCT 61.864 55.000 3.66 5.32 36.62 2.90
554 557 2.028420 TCACCCAGCGATGATTTCAG 57.972 50.000 0.06 0.00 0.00 3.02
595 598 7.044706 GCAGCACAACGAATATCAGAAATAAAC 60.045 37.037 0.00 0.00 0.00 2.01
617 646 3.891056 TTCATCATCAATCATCGCAGC 57.109 42.857 0.00 0.00 0.00 5.25
799 2072 1.393487 TTTGACTGACGTCCGGTGGA 61.393 55.000 14.12 0.51 39.47 4.02
871 2154 1.302832 CAGAGGGAGGTGTGGTTGC 60.303 63.158 0.00 0.00 0.00 4.17
935 2218 2.652348 TCTCCTCTCCTCTTCTGTCCTT 59.348 50.000 0.00 0.00 0.00 3.36
939 2222 2.242196 CTCCTCTCCTCTCCTCTTCTGT 59.758 54.545 0.00 0.00 0.00 3.41
940 2223 2.509548 TCTCCTCTCCTCTCCTCTTCTG 59.490 54.545 0.00 0.00 0.00 3.02
1184 2467 0.245539 CGCTACAGGAAGAAACCGGA 59.754 55.000 9.46 0.00 34.73 5.14
1395 2684 9.773328 CACAGATACAAAATCAATTGTTCGTAT 57.227 29.630 5.13 9.39 40.52 3.06
1458 2750 0.179020 CCAGGCAACCACAGACAGAA 60.179 55.000 0.00 0.00 37.17 3.02
1470 2762 0.250510 TCAACATACGCACCAGGCAA 60.251 50.000 0.00 0.00 45.17 4.52
1484 2776 8.421249 AGTATCCCAAAATCTTTGATTCAACA 57.579 30.769 0.00 0.00 0.00 3.33
1503 2795 4.521256 AGCTCTAACCGAATGAGAGTATCC 59.479 45.833 0.00 0.00 39.17 2.59
1513 2805 7.336396 ACCTAACAAAATAGCTCTAACCGAAT 58.664 34.615 0.00 0.00 0.00 3.34
1572 2864 7.327975 TGAACATGTTTGACTATACGGATTCT 58.672 34.615 13.36 0.00 0.00 2.40
1651 2944 4.776322 TGGATCGCTGCCAACGGG 62.776 66.667 0.00 0.00 31.13 5.28
1671 2964 3.508793 CCATATTGCAATAGAAGGCCCTG 59.491 47.826 22.76 13.63 0.00 4.45
1696 2990 9.877178 ACTAACAGAACTAACATCTGAAATAGG 57.123 33.333 10.27 0.00 45.74 2.57
1712 3006 5.862860 GCAGGTACTTCACTACTAACAGAAC 59.137 44.000 0.00 0.00 34.60 3.01
1733 3027 4.701956 ACAAACATCCTTAATTCGGCAG 57.298 40.909 0.00 0.00 0.00 4.85
1807 3101 1.615392 CTTCTGCCTCCCAACCAAAAG 59.385 52.381 0.00 0.00 0.00 2.27
1846 3140 9.108449 TGTAAACAAAATGTCAAAACGATATCG 57.892 29.630 23.18 23.18 46.33 2.92
1954 3248 5.750547 CCCAAGAAGAAGAAAAGAGCAAAAC 59.249 40.000 0.00 0.00 0.00 2.43
2297 3591 4.580995 TGAGTTTCCAAAAATTAGACCGCA 59.419 37.500 0.00 0.00 0.00 5.69
2298 3592 5.116069 TGAGTTTCCAAAAATTAGACCGC 57.884 39.130 0.00 0.00 0.00 5.68
2539 3862 7.880195 AGAATGATATACCATTGTAAGGTGAGC 59.120 37.037 0.00 0.00 40.26 4.26
2623 3950 3.899052 AACATTACCGAGGGAATTCGA 57.101 42.857 0.00 0.00 43.03 3.71
2635 3962 5.941948 AGTGACAGTTAGCAAACATTACC 57.058 39.130 0.00 0.00 38.12 2.85
2857 4184 7.515861 TGGATATACCTGTGATAGAATGGGAAA 59.484 37.037 0.00 0.00 39.86 3.13
2860 4187 6.669591 TCTGGATATACCTGTGATAGAATGGG 59.330 42.308 0.00 0.00 39.86 4.00
2914 4241 2.173569 GAGCCAGTCCAACCCTTCATAT 59.826 50.000 0.00 0.00 0.00 1.78
2998 4325 2.418368 ACACCAGAGCAAAGTTGACA 57.582 45.000 0.00 0.00 0.00 3.58
3026 4353 4.335594 AGGCTTGAACTACTTGAACAACAC 59.664 41.667 0.00 0.00 0.00 3.32
3027 4354 4.523083 AGGCTTGAACTACTTGAACAACA 58.477 39.130 0.00 0.00 0.00 3.33
3029 4356 5.067283 GGAAAGGCTTGAACTACTTGAACAA 59.933 40.000 0.00 0.00 0.00 2.83
3136 4463 4.641645 CAGGACTGCAACCCCGCA 62.642 66.667 6.05 0.00 40.32 5.69
3137 4464 3.842925 TTCAGGACTGCAACCCCGC 62.843 63.158 6.05 0.00 0.00 6.13
3142 4469 0.877743 GAAGCCTTCAGGACTGCAAC 59.122 55.000 0.00 0.00 37.39 4.17
3267 4594 5.447010 GCAGTGTGATAACAGCTCAAAGATC 60.447 44.000 0.00 0.00 30.52 2.75
3278 4605 6.697395 ACAACATAGTAGCAGTGTGATAACA 58.303 36.000 0.00 0.00 0.00 2.41
3327 4654 7.531857 TTTTCACATAGCATAAAGGGTTTCA 57.468 32.000 0.00 0.00 0.00 2.69
3332 4659 8.299570 GGTATCATTTTCACATAGCATAAAGGG 58.700 37.037 0.00 0.00 0.00 3.95
3356 4684 4.239991 AGGAGCACCTGACATGGT 57.760 55.556 0.22 0.00 45.92 3.55
3375 4703 0.469070 ATCACTCATCAGGCTCAGGC 59.531 55.000 0.00 0.00 37.82 4.85
3401 4729 0.890683 CACAAAACCAGGGCAGGATC 59.109 55.000 1.94 0.00 0.00 3.36
3402 4730 0.482446 TCACAAAACCAGGGCAGGAT 59.518 50.000 1.94 0.00 0.00 3.24
3403 4731 0.260230 TTCACAAAACCAGGGCAGGA 59.740 50.000 1.94 0.00 0.00 3.86
3427 4755 8.141268 TGAGATTAATCACGTGCAGAATACATA 58.859 33.333 17.56 0.00 0.00 2.29
3459 4787 6.832384 ACTAGAGACACGGGTCAATTATAAGA 59.168 38.462 22.01 0.00 46.80 2.10
3460 4788 7.040473 ACTAGAGACACGGGTCAATTATAAG 57.960 40.000 22.01 9.35 46.80 1.73
3461 4789 7.414222 AACTAGAGACACGGGTCAATTATAA 57.586 36.000 22.01 0.00 46.80 0.98
3471 4799 2.556534 CCGTTAACTAGAGACACGGG 57.443 55.000 15.33 0.00 45.44 5.28
3498 4826 5.670792 AATCCTCAGATACCAAACACGTA 57.329 39.130 0.00 0.00 30.42 3.57
3525 4853 4.396166 ACCAGCTTATCCAAAACGAGATTG 59.604 41.667 0.00 0.00 0.00 2.67
3599 4937 9.802039 ATCCAACAAACTCTAGTAATAAAACCA 57.198 29.630 0.00 0.00 0.00 3.67
3608 4950 9.802039 ATTTTAACCATCCAACAAACTCTAGTA 57.198 29.630 0.00 0.00 0.00 1.82
3609 4951 8.576442 CATTTTAACCATCCAACAAACTCTAGT 58.424 33.333 0.00 0.00 0.00 2.57
3615 4957 7.151976 AGCTACATTTTAACCATCCAACAAAC 58.848 34.615 0.00 0.00 0.00 2.93
3651 5008 9.050601 TGTTGTGATTTTGCTTTAAAATAAGGG 57.949 29.630 0.00 0.00 46.27 3.95
3662 5019 9.941325 TCCAATAATTATGTTGTGATTTTGCTT 57.059 25.926 0.00 0.00 0.00 3.91
3691 5048 1.338294 TGAACATTCGCGGGCTAAAGA 60.338 47.619 6.13 0.00 0.00 2.52
3700 5057 0.999406 CCCAGTAGTGAACATTCGCG 59.001 55.000 0.00 0.00 42.30 5.87
3714 5071 1.686800 GCAAATGCCATCCCCCAGT 60.687 57.895 0.00 0.00 34.31 4.00
3716 5073 2.759149 CGCAAATGCCATCCCCCA 60.759 61.111 0.00 0.00 37.91 4.96
3717 5074 1.402107 ATTCGCAAATGCCATCCCCC 61.402 55.000 0.00 0.00 37.91 5.40
3718 5075 0.249573 CATTCGCAAATGCCATCCCC 60.250 55.000 0.00 0.00 36.15 4.81
3746 5103 8.359642 GCCATGTATATTCTAAAGAATTTGCCA 58.640 33.333 10.32 5.52 41.64 4.92
3748 5105 9.748708 TTGCCATGTATATTCTAAAGAATTTGC 57.251 29.630 10.32 7.27 41.64 3.68
3754 5111 9.866655 AGGAAATTGCCATGTATATTCTAAAGA 57.133 29.630 4.92 0.00 0.00 2.52
3757 5114 9.639563 TGAAGGAAATTGCCATGTATATTCTAA 57.360 29.630 4.92 0.00 0.00 2.10
3759 5116 8.000709 TCTGAAGGAAATTGCCATGTATATTCT 58.999 33.333 4.92 0.00 0.00 2.40
3760 5117 8.169977 TCTGAAGGAAATTGCCATGTATATTC 57.830 34.615 4.92 0.00 0.00 1.75
3761 5118 8.537728 TTCTGAAGGAAATTGCCATGTATATT 57.462 30.769 4.92 0.00 0.00 1.28
3762 5119 8.416329 GTTTCTGAAGGAAATTGCCATGTATAT 58.584 33.333 4.92 0.00 44.46 0.86
3764 5121 6.211184 TGTTTCTGAAGGAAATTGCCATGTAT 59.789 34.615 4.92 0.00 44.46 2.29
3765 5122 5.538053 TGTTTCTGAAGGAAATTGCCATGTA 59.462 36.000 4.92 0.00 44.46 2.29
3766 5123 4.344679 TGTTTCTGAAGGAAATTGCCATGT 59.655 37.500 4.92 0.00 44.46 3.21
3768 5125 4.559300 CGTGTTTCTGAAGGAAATTGCCAT 60.559 41.667 4.92 0.00 44.46 4.40
3769 5126 3.243367 CGTGTTTCTGAAGGAAATTGCCA 60.243 43.478 4.92 0.00 44.46 4.92
3770 5127 3.243401 ACGTGTTTCTGAAGGAAATTGCC 60.243 43.478 0.00 0.00 44.46 4.52
3771 5128 3.730715 CACGTGTTTCTGAAGGAAATTGC 59.269 43.478 7.58 0.00 44.46 3.56
3772 5129 4.970003 GTCACGTGTTTCTGAAGGAAATTG 59.030 41.667 16.51 0.00 44.46 2.32
3773 5130 4.638421 TGTCACGTGTTTCTGAAGGAAATT 59.362 37.500 16.51 0.00 44.46 1.82
3774 5131 4.196193 TGTCACGTGTTTCTGAAGGAAAT 58.804 39.130 16.51 0.00 44.46 2.17
3775 5132 3.601435 TGTCACGTGTTTCTGAAGGAAA 58.399 40.909 16.51 0.00 41.11 3.13
3776 5133 3.254470 TGTCACGTGTTTCTGAAGGAA 57.746 42.857 16.51 0.00 0.00 3.36
3777 5134 2.971660 TGTCACGTGTTTCTGAAGGA 57.028 45.000 16.51 0.00 0.00 3.36
3778 5135 4.552166 ATTTGTCACGTGTTTCTGAAGG 57.448 40.909 16.51 0.00 0.00 3.46
3779 5136 6.578545 CCATAATTTGTCACGTGTTTCTGAAG 59.421 38.462 16.51 0.49 0.00 3.02
3780 5137 6.434596 CCATAATTTGTCACGTGTTTCTGAA 58.565 36.000 16.51 3.99 0.00 3.02
3782 5139 4.616802 GCCATAATTTGTCACGTGTTTCTG 59.383 41.667 16.51 3.77 0.00 3.02
3783 5140 4.277174 TGCCATAATTTGTCACGTGTTTCT 59.723 37.500 16.51 0.00 0.00 2.52
3784 5141 4.541779 TGCCATAATTTGTCACGTGTTTC 58.458 39.130 16.51 8.18 0.00 2.78
3785 5142 4.576216 TGCCATAATTTGTCACGTGTTT 57.424 36.364 16.51 5.69 0.00 2.83
3786 5143 4.202060 TGTTGCCATAATTTGTCACGTGTT 60.202 37.500 16.51 4.43 0.00 3.32
3787 5144 3.316588 TGTTGCCATAATTTGTCACGTGT 59.683 39.130 16.51 0.00 0.00 4.49
3789 5146 4.576216 TTGTTGCCATAATTTGTCACGT 57.424 36.364 0.00 0.00 0.00 4.49
3790 5147 5.107530 CCTTTTGTTGCCATAATTTGTCACG 60.108 40.000 0.00 0.00 0.00 4.35
3791 5148 5.988561 TCCTTTTGTTGCCATAATTTGTCAC 59.011 36.000 0.00 0.00 0.00 3.67
3792 5149 6.166984 TCCTTTTGTTGCCATAATTTGTCA 57.833 33.333 0.00 0.00 0.00 3.58
3793 5150 7.671495 AATCCTTTTGTTGCCATAATTTGTC 57.329 32.000 0.00 0.00 0.00 3.18
3794 5151 8.351461 CAAAATCCTTTTGTTGCCATAATTTGT 58.649 29.630 4.56 0.00 43.77 2.83
3795 5152 8.730970 CAAAATCCTTTTGTTGCCATAATTTG 57.269 30.769 4.56 0.00 43.77 2.32
3809 5166 6.017687 GCAATCTTTCACAGCAAAATCCTTTT 60.018 34.615 0.00 0.00 0.00 2.27
3811 5168 4.992951 GCAATCTTTCACAGCAAAATCCTT 59.007 37.500 0.00 0.00 0.00 3.36
3812 5169 4.282703 AGCAATCTTTCACAGCAAAATCCT 59.717 37.500 0.00 0.00 0.00 3.24
3814 5171 4.986659 ACAGCAATCTTTCACAGCAAAATC 59.013 37.500 0.00 0.00 0.00 2.17
3815 5172 4.748102 CACAGCAATCTTTCACAGCAAAAT 59.252 37.500 0.00 0.00 0.00 1.82
3816 5173 4.114073 CACAGCAATCTTTCACAGCAAAA 58.886 39.130 0.00 0.00 0.00 2.44
3817 5174 3.130869 ACACAGCAATCTTTCACAGCAAA 59.869 39.130 0.00 0.00 0.00 3.68
3818 5175 2.689471 ACACAGCAATCTTTCACAGCAA 59.311 40.909 0.00 0.00 0.00 3.91
3819 5176 2.300433 ACACAGCAATCTTTCACAGCA 58.700 42.857 0.00 0.00 0.00 4.41
3820 5177 3.303406 GAACACAGCAATCTTTCACAGC 58.697 45.455 0.00 0.00 0.00 4.40
3821 5178 3.548587 CGAACACAGCAATCTTTCACAG 58.451 45.455 0.00 0.00 0.00 3.66
3822 5179 2.286950 GCGAACACAGCAATCTTTCACA 60.287 45.455 0.00 0.00 34.19 3.58
3823 5180 2.031682 AGCGAACACAGCAATCTTTCAC 60.032 45.455 0.00 0.00 37.01 3.18
3824 5181 2.031769 CAGCGAACACAGCAATCTTTCA 60.032 45.455 0.00 0.00 37.01 2.69
3826 5183 2.221169 TCAGCGAACACAGCAATCTTT 58.779 42.857 0.00 0.00 37.01 2.52
3827 5184 1.882912 TCAGCGAACACAGCAATCTT 58.117 45.000 0.00 0.00 37.01 2.40
3828 5185 1.882912 TTCAGCGAACACAGCAATCT 58.117 45.000 0.00 0.00 37.01 2.40
3830 5187 1.267806 CCTTTCAGCGAACACAGCAAT 59.732 47.619 0.00 0.00 37.01 3.56
3831 5188 0.662619 CCTTTCAGCGAACACAGCAA 59.337 50.000 0.00 0.00 37.01 3.91
3832 5189 0.179059 TCCTTTCAGCGAACACAGCA 60.179 50.000 0.00 0.00 37.01 4.41
3833 5190 0.944386 TTCCTTTCAGCGAACACAGC 59.056 50.000 0.00 0.00 0.00 4.40
3834 5191 3.003689 ACAATTCCTTTCAGCGAACACAG 59.996 43.478 0.00 0.00 0.00 3.66
3835 5192 2.948979 ACAATTCCTTTCAGCGAACACA 59.051 40.909 0.00 0.00 0.00 3.72
3836 5193 3.003275 TGACAATTCCTTTCAGCGAACAC 59.997 43.478 0.00 0.00 0.00 3.32
3838 5195 3.896648 TGACAATTCCTTTCAGCGAAC 57.103 42.857 0.00 0.00 0.00 3.95
3840 5197 6.363577 GAATATGACAATTCCTTTCAGCGA 57.636 37.500 0.00 0.00 30.96 4.93
3850 5207 2.618241 TGCAGCGGGAATATGACAATTC 59.382 45.455 0.00 0.00 35.51 2.17
3851 5208 2.653726 TGCAGCGGGAATATGACAATT 58.346 42.857 0.00 0.00 0.00 2.32
3852 5209 2.346766 TGCAGCGGGAATATGACAAT 57.653 45.000 0.00 0.00 0.00 2.71
3853 5210 2.346766 ATGCAGCGGGAATATGACAA 57.653 45.000 0.00 0.00 0.00 3.18
3854 5211 3.483808 TTATGCAGCGGGAATATGACA 57.516 42.857 0.00 0.00 0.00 3.58
3855 5212 4.537015 GTTTTATGCAGCGGGAATATGAC 58.463 43.478 0.00 0.00 0.00 3.06
3856 5213 3.568007 GGTTTTATGCAGCGGGAATATGA 59.432 43.478 0.00 0.00 0.00 2.15
3857 5214 3.305335 GGGTTTTATGCAGCGGGAATATG 60.305 47.826 0.00 0.00 0.00 1.78
3858 5215 2.890945 GGGTTTTATGCAGCGGGAATAT 59.109 45.455 0.00 0.00 0.00 1.28
3859 5216 2.303175 GGGTTTTATGCAGCGGGAATA 58.697 47.619 0.00 0.00 0.00 1.75
3860 5217 1.111277 GGGTTTTATGCAGCGGGAAT 58.889 50.000 0.00 0.00 0.00 3.01
3863 5220 2.770589 CCGGGTTTTATGCAGCGGG 61.771 63.158 0.00 0.00 0.00 6.13
3866 5223 0.170339 GTCACCGGGTTTTATGCAGC 59.830 55.000 6.32 0.00 0.00 5.25
3867 5224 1.529226 TGTCACCGGGTTTTATGCAG 58.471 50.000 6.32 0.00 0.00 4.41
3868 5225 1.982660 TTGTCACCGGGTTTTATGCA 58.017 45.000 6.32 0.00 0.00 3.96
3869 5226 2.668250 GTTTGTCACCGGGTTTTATGC 58.332 47.619 6.32 0.00 0.00 3.14
3872 5229 2.035530 ACGTTTGTCACCGGGTTTTA 57.964 45.000 6.32 0.00 0.00 1.52
3873 5230 1.132834 GAACGTTTGTCACCGGGTTTT 59.867 47.619 6.32 0.00 0.00 2.43
3874 5231 0.734309 GAACGTTTGTCACCGGGTTT 59.266 50.000 6.32 0.00 0.00 3.27
3875 5232 1.430707 CGAACGTTTGTCACCGGGTT 61.431 55.000 6.32 0.00 0.00 4.11
3876 5233 1.884004 CGAACGTTTGTCACCGGGT 60.884 57.895 6.32 0.00 0.00 5.28
3877 5234 2.932905 CGAACGTTTGTCACCGGG 59.067 61.111 6.32 0.00 0.00 5.73
3878 5235 2.037913 TTGCGAACGTTTGTCACCGG 62.038 55.000 16.75 0.00 0.00 5.28
3879 5236 0.247735 TTTGCGAACGTTTGTCACCG 60.248 50.000 16.75 8.77 0.00 4.94
3880 5237 1.778591 CATTTGCGAACGTTTGTCACC 59.221 47.619 16.75 0.97 0.00 4.02
3881 5238 1.187055 GCATTTGCGAACGTTTGTCAC 59.813 47.619 16.75 1.32 0.00 3.67
3882 5239 1.471964 GCATTTGCGAACGTTTGTCA 58.528 45.000 16.75 12.01 0.00 3.58
3883 5240 0.775861 GGCATTTGCGAACGTTTGTC 59.224 50.000 16.75 9.69 43.26 3.18
3885 5242 1.386412 GATGGCATTTGCGAACGTTTG 59.614 47.619 11.39 11.39 43.26 2.93
3886 5243 1.668628 GGATGGCATTTGCGAACGTTT 60.669 47.619 0.46 0.00 43.26 3.60
3887 5244 0.109319 GGATGGCATTTGCGAACGTT 60.109 50.000 0.00 0.00 43.26 3.99
3888 5245 1.506262 GGATGGCATTTGCGAACGT 59.494 52.632 0.00 0.00 43.26 3.99
3889 5246 1.226660 GGGATGGCATTTGCGAACG 60.227 57.895 0.00 0.00 43.26 3.95
3890 5247 0.179129 CTGGGATGGCATTTGCGAAC 60.179 55.000 0.00 0.00 43.26 3.95
3891 5248 1.947597 GCTGGGATGGCATTTGCGAA 61.948 55.000 0.00 0.00 43.26 4.70
3892 5249 2.417257 GCTGGGATGGCATTTGCGA 61.417 57.895 0.00 0.00 43.26 5.10
3894 5251 0.036199 TTTGCTGGGATGGCATTTGC 60.036 50.000 0.00 4.81 39.54 3.68
3895 5252 1.729284 GTTTGCTGGGATGGCATTTG 58.271 50.000 0.00 0.00 39.54 2.32
3896 5253 0.247185 CGTTTGCTGGGATGGCATTT 59.753 50.000 0.00 0.00 39.54 2.32
3897 5254 0.899717 ACGTTTGCTGGGATGGCATT 60.900 50.000 0.00 0.00 39.54 3.56
3898 5255 0.899717 AACGTTTGCTGGGATGGCAT 60.900 50.000 0.00 0.00 39.54 4.40
3899 5256 1.523154 GAACGTTTGCTGGGATGGCA 61.523 55.000 0.46 0.00 37.97 4.92
3900 5257 1.212751 GAACGTTTGCTGGGATGGC 59.787 57.895 0.46 0.00 0.00 4.40
3902 5259 1.154225 GCGAACGTTTGCTGGGATG 60.154 57.895 29.32 1.54 34.69 3.51
3903 5260 0.036765 TAGCGAACGTTTGCTGGGAT 60.037 50.000 40.64 23.95 46.97 3.85
3904 5261 0.249953 TTAGCGAACGTTTGCTGGGA 60.250 50.000 40.64 27.43 46.97 4.37
3905 5262 0.589223 TTTAGCGAACGTTTGCTGGG 59.411 50.000 40.64 13.03 46.97 4.45
3906 5263 2.611974 ATTTAGCGAACGTTTGCTGG 57.388 45.000 40.64 14.60 46.97 4.85
3908 5265 7.066559 CAATGCAATTTAGCGAACGTTTGCT 62.067 40.000 37.67 37.67 42.40 3.91
3909 5266 2.047769 TGCAATTTAGCGAACGTTTGC 58.952 42.857 29.41 29.41 39.78 3.68
3910 5267 4.617328 CAATGCAATTTAGCGAACGTTTG 58.383 39.130 11.39 11.39 31.22 2.93
3911 5268 3.121113 GCAATGCAATTTAGCGAACGTTT 59.879 39.130 0.46 0.00 31.22 3.60
3913 5270 2.095263 AGCAATGCAATTTAGCGAACGT 60.095 40.909 8.35 0.00 31.22 3.99
3914 5271 2.518949 AGCAATGCAATTTAGCGAACG 58.481 42.857 8.35 0.00 31.22 3.95
3915 5272 3.791353 GGTAGCAATGCAATTTAGCGAAC 59.209 43.478 8.35 0.00 31.22 3.95
3916 5273 3.486708 CGGTAGCAATGCAATTTAGCGAA 60.487 43.478 15.45 0.00 40.80 4.70
3917 5274 2.031560 CGGTAGCAATGCAATTTAGCGA 59.968 45.455 15.45 0.00 40.80 4.93
3919 5276 3.420839 ACGGTAGCAATGCAATTTAGC 57.579 42.857 8.35 0.00 31.22 3.09
3920 5277 7.985634 AAAATACGGTAGCAATGCAATTTAG 57.014 32.000 8.35 0.00 31.22 1.85
3971 6046 1.870458 TTGATTCGCGCCGTAGTCG 60.870 57.895 0.00 0.00 0.00 4.18
3972 6047 1.629504 GTTGATTCGCGCCGTAGTC 59.370 57.895 0.00 0.00 0.00 2.59
3973 6048 1.808390 GGTTGATTCGCGCCGTAGT 60.808 57.895 0.00 0.00 0.00 2.73
3974 6049 1.518572 AGGTTGATTCGCGCCGTAG 60.519 57.895 0.00 0.00 0.00 3.51
3975 6050 1.807981 CAGGTTGATTCGCGCCGTA 60.808 57.895 0.00 0.00 0.00 4.02
3976 6051 3.118454 CAGGTTGATTCGCGCCGT 61.118 61.111 0.00 0.00 0.00 5.68
3977 6052 3.118454 ACAGGTTGATTCGCGCCG 61.118 61.111 0.00 0.00 0.00 6.46
3978 6053 2.480555 CACAGGTTGATTCGCGCC 59.519 61.111 0.00 0.00 0.00 6.53
3979 6054 1.852067 AACCACAGGTTGATTCGCGC 61.852 55.000 0.00 0.00 45.07 6.86
3980 6055 2.244000 AACCACAGGTTGATTCGCG 58.756 52.632 0.00 0.00 45.07 5.87
3989 6064 2.158667 CCTAACCAACTCAACCACAGGT 60.159 50.000 0.00 0.00 37.65 4.00
3990 6065 2.158667 ACCTAACCAACTCAACCACAGG 60.159 50.000 0.00 0.00 0.00 4.00
3991 6066 2.878406 CACCTAACCAACTCAACCACAG 59.122 50.000 0.00 0.00 0.00 3.66
3992 6067 2.422235 CCACCTAACCAACTCAACCACA 60.422 50.000 0.00 0.00 0.00 4.17
3993 6068 2.158726 TCCACCTAACCAACTCAACCAC 60.159 50.000 0.00 0.00 0.00 4.16
3994 6069 2.128535 TCCACCTAACCAACTCAACCA 58.871 47.619 0.00 0.00 0.00 3.67
3995 6070 2.158726 TGTCCACCTAACCAACTCAACC 60.159 50.000 0.00 0.00 0.00 3.77
3996 6071 3.139077 CTGTCCACCTAACCAACTCAAC 58.861 50.000 0.00 0.00 0.00 3.18
3997 6072 2.775384 ACTGTCCACCTAACCAACTCAA 59.225 45.455 0.00 0.00 0.00 3.02
3998 6073 2.104111 CACTGTCCACCTAACCAACTCA 59.896 50.000 0.00 0.00 0.00 3.41
3999 6074 2.550208 CCACTGTCCACCTAACCAACTC 60.550 54.545 0.00 0.00 0.00 3.01
4000 6075 1.420138 CCACTGTCCACCTAACCAACT 59.580 52.381 0.00 0.00 0.00 3.16
4001 6076 1.142262 ACCACTGTCCACCTAACCAAC 59.858 52.381 0.00 0.00 0.00 3.77
4002 6077 1.513858 ACCACTGTCCACCTAACCAA 58.486 50.000 0.00 0.00 0.00 3.67
4003 6078 2.402182 TACCACTGTCCACCTAACCA 57.598 50.000 0.00 0.00 0.00 3.67
4004 6079 2.169978 GGATACCACTGTCCACCTAACC 59.830 54.545 0.00 0.00 34.57 2.85
4005 6080 3.538634 GGATACCACTGTCCACCTAAC 57.461 52.381 0.00 0.00 34.57 2.34
4020 6095 1.613061 CCTGGTGGGTTGGGGATAC 59.387 63.158 0.00 0.00 0.00 2.24
4021 6096 4.179896 CCTGGTGGGTTGGGGATA 57.820 61.111 0.00 0.00 0.00 2.59
4031 6106 1.549203 CAGGATTTGAACCCTGGTGG 58.451 55.000 0.00 0.00 44.68 4.61
4036 6111 0.779997 AGCACCAGGATTTGAACCCT 59.220 50.000 0.00 0.00 0.00 4.34
4037 6112 1.177401 GAGCACCAGGATTTGAACCC 58.823 55.000 0.00 0.00 0.00 4.11
4038 6113 0.804989 CGAGCACCAGGATTTGAACC 59.195 55.000 0.00 0.00 0.00 3.62
4039 6114 0.169009 GCGAGCACCAGGATTTGAAC 59.831 55.000 0.00 0.00 0.00 3.18
4040 6115 0.250684 TGCGAGCACCAGGATTTGAA 60.251 50.000 0.00 0.00 0.00 2.69
4041 6116 0.035152 ATGCGAGCACCAGGATTTGA 60.035 50.000 0.00 0.00 0.00 2.69
4042 6117 0.813184 AATGCGAGCACCAGGATTTG 59.187 50.000 0.00 0.00 0.00 2.32
4043 6118 2.418368 TAATGCGAGCACCAGGATTT 57.582 45.000 0.00 0.00 31.11 2.17
4044 6119 2.645838 ATAATGCGAGCACCAGGATT 57.354 45.000 0.00 0.00 33.17 3.01
4045 6120 2.498167 GAATAATGCGAGCACCAGGAT 58.502 47.619 0.00 0.00 0.00 3.24
4046 6121 1.475034 GGAATAATGCGAGCACCAGGA 60.475 52.381 0.00 0.00 0.00 3.86
4047 6122 0.947244 GGAATAATGCGAGCACCAGG 59.053 55.000 0.00 0.00 0.00 4.45
4048 6123 1.600957 CAGGAATAATGCGAGCACCAG 59.399 52.381 0.00 0.00 0.00 4.00
4049 6124 1.667236 CAGGAATAATGCGAGCACCA 58.333 50.000 0.00 0.00 0.00 4.17
4050 6125 0.947244 CCAGGAATAATGCGAGCACC 59.053 55.000 0.00 0.00 0.00 5.01
4051 6126 1.953559 TCCAGGAATAATGCGAGCAC 58.046 50.000 0.00 0.00 0.00 4.40
4052 6127 2.936919 ATCCAGGAATAATGCGAGCA 57.063 45.000 0.00 0.00 0.00 4.26
4053 6128 5.886960 ATAAATCCAGGAATAATGCGAGC 57.113 39.130 0.00 0.00 0.00 5.03
4054 6129 7.874940 TGAAATAAATCCAGGAATAATGCGAG 58.125 34.615 0.00 0.00 0.00 5.03
4055 6130 7.815840 TGAAATAAATCCAGGAATAATGCGA 57.184 32.000 0.00 0.00 0.00 5.10
4065 6140 5.010012 CCGGAAATCCTGAAATAAATCCAGG 59.990 44.000 0.00 0.00 46.64 4.45
4066 6141 5.507985 GCCGGAAATCCTGAAATAAATCCAG 60.508 44.000 5.05 0.00 0.00 3.86
4067 6142 4.340950 GCCGGAAATCCTGAAATAAATCCA 59.659 41.667 5.05 0.00 0.00 3.41
4068 6143 4.556699 CGCCGGAAATCCTGAAATAAATCC 60.557 45.833 5.05 0.00 0.00 3.01
4069 6144 4.274950 TCGCCGGAAATCCTGAAATAAATC 59.725 41.667 5.05 0.00 0.00 2.17
4070 6145 4.204012 TCGCCGGAAATCCTGAAATAAAT 58.796 39.130 5.05 0.00 0.00 1.40
4071 6146 3.611970 TCGCCGGAAATCCTGAAATAAA 58.388 40.909 5.05 0.00 0.00 1.40
4072 6147 3.269538 TCGCCGGAAATCCTGAAATAA 57.730 42.857 5.05 0.00 0.00 1.40
4073 6148 2.992124 TCGCCGGAAATCCTGAAATA 57.008 45.000 5.05 0.00 0.00 1.40
4074 6149 1.949525 CATCGCCGGAAATCCTGAAAT 59.050 47.619 5.05 0.00 0.00 2.17
4075 6150 1.378531 CATCGCCGGAAATCCTGAAA 58.621 50.000 5.05 0.00 0.00 2.69
4076 6151 1.095228 GCATCGCCGGAAATCCTGAA 61.095 55.000 5.05 0.00 0.00 3.02
4077 6152 1.523711 GCATCGCCGGAAATCCTGA 60.524 57.895 5.05 0.00 0.00 3.86
4078 6153 2.885676 CGCATCGCCGGAAATCCTG 61.886 63.158 5.05 0.00 0.00 3.86
4079 6154 2.588877 CGCATCGCCGGAAATCCT 60.589 61.111 5.05 0.00 0.00 3.24
4090 6165 1.154205 CCTCCCACTAAAGCGCATCG 61.154 60.000 11.47 0.00 0.00 3.84
4091 6166 0.178068 TCCTCCCACTAAAGCGCATC 59.822 55.000 11.47 0.00 0.00 3.91
4092 6167 0.179000 CTCCTCCCACTAAAGCGCAT 59.821 55.000 11.47 0.00 0.00 4.73
4093 6168 0.902984 TCTCCTCCCACTAAAGCGCA 60.903 55.000 11.47 0.00 0.00 6.09
4094 6169 0.460459 GTCTCCTCCCACTAAAGCGC 60.460 60.000 0.00 0.00 0.00 5.92
4095 6170 0.179134 CGTCTCCTCCCACTAAAGCG 60.179 60.000 0.00 0.00 0.00 4.68
4096 6171 0.896226 ACGTCTCCTCCCACTAAAGC 59.104 55.000 0.00 0.00 0.00 3.51
4097 6172 2.094130 GGAACGTCTCCTCCCACTAAAG 60.094 54.545 8.87 0.00 41.61 1.85
4098 6173 1.897802 GGAACGTCTCCTCCCACTAAA 59.102 52.381 8.87 0.00 41.61 1.85
4099 6174 1.553706 GGAACGTCTCCTCCCACTAA 58.446 55.000 8.87 0.00 41.61 2.24
4100 6175 3.277962 GGAACGTCTCCTCCCACTA 57.722 57.895 8.87 0.00 41.61 2.74
4101 6176 4.115270 GGAACGTCTCCTCCCACT 57.885 61.111 8.87 0.00 41.61 4.00
4120 6195 2.831366 TAGGCGCCTCGTCATCGAC 61.831 63.158 36.73 0.00 41.35 4.20
4121 6196 2.515290 TAGGCGCCTCGTCATCGA 60.515 61.111 36.73 10.36 44.12 3.59
4122 6197 2.353607 GTAGGCGCCTCGTCATCG 60.354 66.667 36.73 0.00 32.13 3.84
4123 6198 2.353607 CGTAGGCGCCTCGTCATC 60.354 66.667 36.73 15.88 32.13 2.92
4124 6199 3.900892 CCGTAGGCGCCTCGTCAT 61.901 66.667 36.73 11.27 46.14 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.