Multiple sequence alignment - TraesCS5A01G142000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G142000 chr5A 100.000 5014 0 0 1 5014 315331650 315336663 0.000000e+00 9260.0
1 TraesCS5A01G142000 chr5A 81.638 1416 171 51 2865 4204 552315482 552316884 0.000000e+00 1092.0
2 TraesCS5A01G142000 chr5A 79.830 1413 173 67 2875 4204 552375674 552377057 0.000000e+00 928.0
3 TraesCS5A01G142000 chr5A 87.343 798 84 11 2036 2830 552314583 552315366 0.000000e+00 898.0
4 TraesCS5A01G142000 chr5A 84.487 896 99 27 1951 2838 552374736 552375599 0.000000e+00 848.0
5 TraesCS5A01G142000 chr5A 93.878 196 12 0 1115 1310 552372271 552372466 3.800000e-76 296.0
6 TraesCS5A01G142000 chr5A 82.374 278 42 4 4738 5012 422086751 422086478 8.390000e-58 235.0
7 TraesCS5A01G142000 chr5A 81.949 277 42 6 4739 5012 695808642 695808371 1.400000e-55 228.0
8 TraesCS5A01G142000 chr5A 92.424 132 9 1 1179 1310 552314348 552314478 2.380000e-43 187.0
9 TraesCS5A01G142000 chr5D 95.096 2753 113 14 1836 4574 238780531 238777787 0.000000e+00 4316.0
10 TraesCS5A01G142000 chr5D 94.796 1345 45 13 512 1848 238783929 238782602 0.000000e+00 2073.0
11 TraesCS5A01G142000 chr5D 85.750 807 87 16 2036 2830 437039213 437040003 0.000000e+00 828.0
12 TraesCS5A01G142000 chr5D 79.459 1295 152 65 2875 4084 437065946 437067211 0.000000e+00 813.0
13 TraesCS5A01G142000 chr5D 90.256 585 57 0 2038 2622 437065096 437065680 0.000000e+00 765.0
14 TraesCS5A01G142000 chr5D 82.812 704 86 18 2857 3528 437040114 437040814 9.290000e-167 597.0
15 TraesCS5A01G142000 chr5D 93.846 195 12 0 1115 1309 437063264 437063458 1.370000e-75 294.0
16 TraesCS5A01G142000 chr5D 92.308 195 15 0 1116 1310 437038914 437039108 1.370000e-70 278.0
17 TraesCS5A01G142000 chr5D 88.559 236 16 7 216 449 238784209 238783983 4.940000e-70 276.0
18 TraesCS5A01G142000 chr5D 90.374 187 17 1 4560 4746 238776454 238776269 1.390000e-60 244.0
19 TraesCS5A01G142000 chr5D 83.399 253 35 4 4765 5014 430721492 430721244 1.400000e-55 228.0
20 TraesCS5A01G142000 chr5D 81.720 279 44 6 4739 5014 30678388 30678662 5.050000e-55 226.0
21 TraesCS5A01G142000 chr5D 90.541 148 12 2 2693 2838 437065724 437065871 1.420000e-45 195.0
22 TraesCS5A01G142000 chr5B 80.237 1432 172 63 2857 4209 531299099 531300498 0.000000e+00 974.0
23 TraesCS5A01G142000 chr5B 83.349 1051 120 29 2857 3865 531221138 531222175 0.000000e+00 920.0
24 TraesCS5A01G142000 chr5B 86.859 799 87 13 2036 2830 531220246 531221030 0.000000e+00 878.0
25 TraesCS5A01G142000 chr5B 85.153 815 92 15 2038 2850 531298257 531299044 0.000000e+00 808.0
26 TraesCS5A01G142000 chr5B 93.846 195 12 0 1116 1310 531219947 531220141 1.370000e-75 294.0
27 TraesCS5A01G142000 chr5B 93.846 195 12 0 1115 1309 531294962 531295156 1.370000e-75 294.0
28 TraesCS5A01G142000 chr4D 81.136 546 95 7 2053 2594 108218486 108217945 9.970000e-117 431.0
29 TraesCS5A01G142000 chr4D 88.750 80 6 1 3 79 286087230 286087309 1.490000e-15 95.3
30 TraesCS5A01G142000 chr4D 88.750 80 6 1 3 79 286126779 286126858 1.490000e-15 95.3
31 TraesCS5A01G142000 chr4D 88.750 80 6 1 3 79 440036839 440036760 1.490000e-15 95.3
32 TraesCS5A01G142000 chr4B 80.721 555 103 4 2042 2594 168160226 168160778 3.590000e-116 429.0
33 TraesCS5A01G142000 chr4B 90.355 197 19 0 1115 1311 168159883 168160079 4.980000e-65 259.0
34 TraesCS5A01G142000 chr4B 81.720 279 43 5 4739 5014 653308127 653307854 5.050000e-55 226.0
35 TraesCS5A01G142000 chr4B 78.788 264 50 5 3088 3348 168184827 168185087 6.670000e-39 172.0
36 TraesCS5A01G142000 chr4B 88.506 87 10 0 4645 4731 78540513 78540427 6.870000e-19 106.0
37 TraesCS5A01G142000 chr4B 88.750 80 6 1 3 79 635097170 635097091 1.490000e-15 95.3
38 TraesCS5A01G142000 chr6D 82.796 279 41 4 4739 5014 464708086 464708360 5.010000e-60 243.0
39 TraesCS5A01G142000 chr6D 90.000 80 5 1 3 79 331029856 331029935 3.190000e-17 100.0
40 TraesCS5A01G142000 chr6B 82.079 279 42 5 4739 5014 658744179 658744452 1.090000e-56 231.0
41 TraesCS5A01G142000 chr6B 89.744 78 6 2 4649 4725 520221601 520221525 1.150000e-16 99.0
42 TraesCS5A01G142000 chr3A 83.137 255 36 6 4763 5014 23144473 23144223 5.050000e-55 226.0
43 TraesCS5A01G142000 chr2D 81.362 279 45 4 4739 5014 25688363 25688637 2.350000e-53 220.0
44 TraesCS5A01G142000 chr2D 90.000 80 5 1 3 79 196805714 196805793 3.190000e-17 100.0
45 TraesCS5A01G142000 chr2D 90.000 80 5 1 3 79 422564773 422564694 3.190000e-17 100.0
46 TraesCS5A01G142000 chr3B 88.764 89 8 2 4645 4732 199054050 199054137 1.910000e-19 108.0
47 TraesCS5A01G142000 chr7A 87.356 87 8 2 4649 4734 503683857 503683773 4.130000e-16 97.1
48 TraesCS5A01G142000 chr1D 88.750 80 6 1 3 79 398874912 398874833 1.490000e-15 95.3
49 TraesCS5A01G142000 chr1A 88.750 80 5 2 3 79 471727394 471727472 1.490000e-15 95.3
50 TraesCS5A01G142000 chr6A 88.462 78 7 2 4649 4725 30803749 30803673 5.340000e-15 93.5
51 TraesCS5A01G142000 chr6A 88.462 78 6 2 4649 4725 78175537 78175462 1.920000e-14 91.6
52 TraesCS5A01G142000 chr7B 87.179 78 8 2 4649 4725 663029543 663029619 2.490000e-13 87.9
53 TraesCS5A01G142000 chr7D 85.057 87 10 3 4649 4734 515544197 515544113 8.940000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G142000 chr5A 315331650 315336663 5013 False 9260.000000 9260 100.000000 1 5014 1 chr5A.!!$F1 5013
1 TraesCS5A01G142000 chr5A 552314348 552316884 2536 False 725.666667 1092 87.135000 1179 4204 3 chr5A.!!$F2 3025
2 TraesCS5A01G142000 chr5A 552372271 552377057 4786 False 690.666667 928 86.065000 1115 4204 3 chr5A.!!$F3 3089
3 TraesCS5A01G142000 chr5D 238776269 238784209 7940 True 1727.250000 4316 92.206250 216 4746 4 chr5D.!!$R2 4530
4 TraesCS5A01G142000 chr5D 437038914 437040814 1900 False 567.666667 828 86.956667 1116 3528 3 chr5D.!!$F2 2412
5 TraesCS5A01G142000 chr5D 437063264 437067211 3947 False 516.750000 813 88.525500 1115 4084 4 chr5D.!!$F3 2969
6 TraesCS5A01G142000 chr5B 531219947 531222175 2228 False 697.333333 920 88.018000 1116 3865 3 chr5B.!!$F1 2749
7 TraesCS5A01G142000 chr5B 531294962 531300498 5536 False 692.000000 974 86.412000 1115 4209 3 chr5B.!!$F2 3094
8 TraesCS5A01G142000 chr4D 108217945 108218486 541 True 431.000000 431 81.136000 2053 2594 1 chr4D.!!$R1 541
9 TraesCS5A01G142000 chr4B 168159883 168160778 895 False 344.000000 429 85.538000 1115 2594 2 chr4B.!!$F2 1479

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
987 1020 0.036952 AGACGTGGCTGATTCACTGG 60.037 55.000 0.00 0.0 33.31 4.00 F
1013 1046 0.106819 CAGCCAATGGAGAAGAGGGG 60.107 60.000 2.05 0.0 0.00 4.79 F
1089 1122 1.517257 GAGTGACATGGTCGGCGAG 60.517 63.158 11.20 0.0 34.95 5.03 F
1885 7218 2.131709 CCATCCCGAGCCGGTCTAA 61.132 63.158 1.90 0.0 46.80 2.10 F
2459 7965 1.127343 TGGTCATCGCCATGTGGATA 58.873 50.000 2.55 0.0 37.39 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1831 2108 0.320334 CCAATGGGGTTGTTTTCGCC 60.320 55.0 0.00 0.0 36.01 5.54 R
1860 4220 0.463654 CGGCTCGGGATGGAAAATGA 60.464 55.0 0.00 0.0 0.00 2.57 R
1905 7241 0.606604 GGTCTACCGGACAAAGAGCA 59.393 55.0 9.46 0.0 46.16 4.26 R
3480 9143 0.591236 CAACGACACTTTGCCAACCG 60.591 55.0 0.00 0.0 0.00 4.44 R
4210 9937 0.612174 TCTCTAGTGGAGCCTGCGTT 60.612 55.0 0.00 0.0 41.60 4.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 8.880991 ACCACACATATATTACTCCCTAGTAG 57.119 38.462 0.00 0.00 39.36 2.57
28 29 8.676020 ACCACACATATATTACTCCCTAGTAGA 58.324 37.037 0.00 0.00 39.36 2.59
29 30 9.179909 CCACACATATATTACTCCCTAGTAGAG 57.820 40.741 0.00 5.66 39.36 2.43
30 31 9.961264 CACACATATATTACTCCCTAGTAGAGA 57.039 37.037 12.66 0.00 39.36 3.10
32 33 9.621629 CACATATATTACTCCCTAGTAGAGAGG 57.378 40.741 12.79 0.00 39.36 3.69
33 34 9.354108 ACATATATTACTCCCTAGTAGAGAGGT 57.646 37.037 12.79 2.30 39.36 3.85
36 37 8.993993 ATATTACTCCCTAGTAGAGAGGTAGT 57.006 38.462 12.79 7.21 39.36 2.73
38 39 8.811341 ATTACTCCCTAGTAGAGAGGTAGTAA 57.189 38.462 12.79 8.70 39.36 2.24
39 40 6.499106 ACTCCCTAGTAGAGAGGTAGTAAC 57.501 45.833 12.79 0.00 32.84 2.50
40 41 5.969402 ACTCCCTAGTAGAGAGGTAGTAACA 59.031 44.000 12.79 0.00 32.84 2.41
41 42 6.620682 ACTCCCTAGTAGAGAGGTAGTAACAT 59.379 42.308 12.79 0.00 32.84 2.71
42 43 7.793709 ACTCCCTAGTAGAGAGGTAGTAACATA 59.206 40.741 12.79 0.00 32.84 2.29
43 44 8.204903 TCCCTAGTAGAGAGGTAGTAACATAG 57.795 42.308 0.00 0.00 31.52 2.23
44 45 8.015456 TCCCTAGTAGAGAGGTAGTAACATAGA 58.985 40.741 0.00 0.00 31.52 1.98
45 46 8.316214 CCCTAGTAGAGAGGTAGTAACATAGAG 58.684 44.444 0.00 0.00 31.52 2.43
46 47 8.873144 CCTAGTAGAGAGGTAGTAACATAGAGT 58.127 40.741 0.00 0.00 0.00 3.24
49 50 9.438163 AGTAGAGAGGTAGTAACATAGAGTAGT 57.562 37.037 0.00 0.00 0.00 2.73
53 54 9.829507 GAGAGGTAGTAACATAGAGTAGTAACA 57.170 37.037 0.00 0.00 0.00 2.41
56 57 9.352191 AGGTAGTAACATAGAGTAGTAACATGG 57.648 37.037 0.00 0.00 0.00 3.66
57 58 8.574737 GGTAGTAACATAGAGTAGTAACATGGG 58.425 40.741 0.00 0.00 0.00 4.00
58 59 7.052142 AGTAACATAGAGTAGTAACATGGGC 57.948 40.000 0.00 0.00 0.00 5.36
59 60 6.839657 AGTAACATAGAGTAGTAACATGGGCT 59.160 38.462 0.00 0.00 0.00 5.19
60 61 6.561519 AACATAGAGTAGTAACATGGGCTT 57.438 37.500 0.00 0.00 0.00 4.35
61 62 7.670605 AACATAGAGTAGTAACATGGGCTTA 57.329 36.000 0.00 0.00 0.00 3.09
62 63 7.052142 ACATAGAGTAGTAACATGGGCTTAC 57.948 40.000 0.00 0.00 0.00 2.34
63 64 6.839657 ACATAGAGTAGTAACATGGGCTTACT 59.160 38.462 10.88 10.88 37.96 2.24
64 65 8.003044 ACATAGAGTAGTAACATGGGCTTACTA 58.997 37.037 9.30 9.30 36.18 1.82
65 66 9.026121 CATAGAGTAGTAACATGGGCTTACTAT 57.974 37.037 14.20 8.85 38.40 2.12
66 67 7.916077 AGAGTAGTAACATGGGCTTACTATT 57.084 36.000 14.20 11.37 38.40 1.73
67 68 7.953752 AGAGTAGTAACATGGGCTTACTATTC 58.046 38.462 19.20 19.20 40.42 1.75
68 69 7.785506 AGAGTAGTAACATGGGCTTACTATTCT 59.214 37.037 21.55 21.55 42.79 2.40
69 70 9.075678 GAGTAGTAACATGGGCTTACTATTCTA 57.924 37.037 19.38 2.22 38.80 2.10
70 71 9.603189 AGTAGTAACATGGGCTTACTATTCTAT 57.397 33.333 14.20 1.83 38.40 1.98
97 98 5.708877 CTACATAGAGTAGTAACCTGGGC 57.291 47.826 0.00 0.00 44.24 5.36
98 99 4.267341 ACATAGAGTAGTAACCTGGGCT 57.733 45.455 0.00 0.00 0.00 5.19
99 100 4.621769 ACATAGAGTAGTAACCTGGGCTT 58.378 43.478 0.00 0.00 0.00 4.35
100 101 5.774179 ACATAGAGTAGTAACCTGGGCTTA 58.226 41.667 0.00 0.00 0.00 3.09
101 102 5.597594 ACATAGAGTAGTAACCTGGGCTTAC 59.402 44.000 0.00 0.00 0.00 2.34
102 103 4.334208 AGAGTAGTAACCTGGGCTTACT 57.666 45.455 12.64 12.64 37.96 2.24
103 104 5.463051 AGAGTAGTAACCTGGGCTTACTA 57.537 43.478 11.06 11.06 36.18 1.82
104 105 6.028258 AGAGTAGTAACCTGGGCTTACTAT 57.972 41.667 15.80 5.98 38.40 2.12
105 106 6.442091 AGAGTAGTAACCTGGGCTTACTATT 58.558 40.000 15.80 13.00 38.40 1.73
106 107 6.550481 AGAGTAGTAACCTGGGCTTACTATTC 59.450 42.308 20.46 20.46 40.42 1.75
107 108 6.442091 AGTAGTAACCTGGGCTTACTATTCT 58.558 40.000 15.80 9.37 38.40 2.40
108 109 7.589993 AGTAGTAACCTGGGCTTACTATTCTA 58.410 38.462 15.80 0.00 38.40 2.10
109 110 8.233116 AGTAGTAACCTGGGCTTACTATTCTAT 58.767 37.037 15.80 3.47 38.40 1.98
110 111 7.304497 AGTAACCTGGGCTTACTATTCTATG 57.696 40.000 7.69 0.00 33.51 2.23
111 112 6.844917 AGTAACCTGGGCTTACTATTCTATGT 59.155 38.462 7.69 0.00 33.51 2.29
112 113 6.576778 AACCTGGGCTTACTATTCTATGTT 57.423 37.500 0.00 0.00 0.00 2.71
113 114 7.685849 AACCTGGGCTTACTATTCTATGTTA 57.314 36.000 0.00 0.00 0.00 2.41
114 115 7.063934 ACCTGGGCTTACTATTCTATGTTAC 57.936 40.000 0.00 0.00 0.00 2.50
115 116 6.844917 ACCTGGGCTTACTATTCTATGTTACT 59.155 38.462 0.00 0.00 0.00 2.24
116 117 8.008922 ACCTGGGCTTACTATTCTATGTTACTA 58.991 37.037 0.00 0.00 0.00 1.82
117 118 8.305317 CCTGGGCTTACTATTCTATGTTACTAC 58.695 40.741 0.00 0.00 0.00 2.73
118 119 8.186709 TGGGCTTACTATTCTATGTTACTACC 57.813 38.462 0.00 0.00 0.00 3.18
119 120 7.234166 TGGGCTTACTATTCTATGTTACTACCC 59.766 40.741 0.00 0.00 0.00 3.69
120 121 7.234166 GGGCTTACTATTCTATGTTACTACCCA 59.766 40.741 0.00 0.00 0.00 4.51
121 122 8.087136 GGCTTACTATTCTATGTTACTACCCAC 58.913 40.741 0.00 0.00 0.00 4.61
122 123 8.858094 GCTTACTATTCTATGTTACTACCCACT 58.142 37.037 0.00 0.00 0.00 4.00
134 135 8.834004 TGTTACTACCCACTATGATTAGTCTT 57.166 34.615 0.00 0.00 36.50 3.01
135 136 9.925545 TGTTACTACCCACTATGATTAGTCTTA 57.074 33.333 0.00 0.00 36.50 2.10
137 138 9.925545 TTACTACCCACTATGATTAGTCTTACA 57.074 33.333 0.00 0.00 36.50 2.41
138 139 8.235359 ACTACCCACTATGATTAGTCTTACAC 57.765 38.462 0.00 0.00 36.50 2.90
139 140 6.481434 ACCCACTATGATTAGTCTTACACC 57.519 41.667 0.00 0.00 36.50 4.16
140 141 5.365895 ACCCACTATGATTAGTCTTACACCC 59.634 44.000 0.00 0.00 36.50 4.61
141 142 5.365605 CCCACTATGATTAGTCTTACACCCA 59.634 44.000 0.00 0.00 36.50 4.51
142 143 6.043243 CCCACTATGATTAGTCTTACACCCAT 59.957 42.308 0.00 0.00 36.50 4.00
143 144 7.234782 CCCACTATGATTAGTCTTACACCCATA 59.765 40.741 0.00 0.00 36.50 2.74
144 145 8.816894 CCACTATGATTAGTCTTACACCCATAT 58.183 37.037 0.00 0.00 36.50 1.78
154 155 8.191534 AGTCTTACACCCATATATGTTACTCC 57.808 38.462 11.73 0.00 0.00 3.85
155 156 7.234988 AGTCTTACACCCATATATGTTACTCCC 59.765 40.741 11.73 0.00 0.00 4.30
156 157 6.499350 TCTTACACCCATATATGTTACTCCCC 59.501 42.308 11.73 0.00 0.00 4.81
157 158 4.572978 ACACCCATATATGTTACTCCCCA 58.427 43.478 11.73 0.00 0.00 4.96
158 159 5.170198 ACACCCATATATGTTACTCCCCAT 58.830 41.667 11.73 0.00 0.00 4.00
159 160 5.615261 ACACCCATATATGTTACTCCCCATT 59.385 40.000 11.73 0.00 0.00 3.16
160 161 6.795507 ACACCCATATATGTTACTCCCCATTA 59.204 38.462 11.73 0.00 0.00 1.90
161 162 7.037586 ACACCCATATATGTTACTCCCCATTAG 60.038 40.741 11.73 0.00 0.00 1.73
162 163 7.182026 CACCCATATATGTTACTCCCCATTAGA 59.818 40.741 11.73 0.00 0.00 2.10
163 164 7.403231 ACCCATATATGTTACTCCCCATTAGAG 59.597 40.741 11.73 0.00 37.39 2.43
164 165 7.623677 CCCATATATGTTACTCCCCATTAGAGA 59.376 40.741 11.73 0.00 35.27 3.10
165 166 8.700051 CCATATATGTTACTCCCCATTAGAGAG 58.300 40.741 11.73 0.00 35.27 3.20
166 167 9.480861 CATATATGTTACTCCCCATTAGAGAGA 57.519 37.037 4.43 0.00 35.27 3.10
169 170 9.707957 ATATGTTACTCCCCATTAGAGAGATAG 57.292 37.037 0.00 0.00 35.27 2.08
170 171 5.775701 TGTTACTCCCCATTAGAGAGATAGC 59.224 44.000 0.00 0.00 35.27 2.97
171 172 4.477536 ACTCCCCATTAGAGAGATAGCA 57.522 45.455 0.00 0.00 35.27 3.49
172 173 4.820775 ACTCCCCATTAGAGAGATAGCAA 58.179 43.478 0.00 0.00 35.27 3.91
173 174 4.591072 ACTCCCCATTAGAGAGATAGCAAC 59.409 45.833 0.00 0.00 35.27 4.17
174 175 4.556697 TCCCCATTAGAGAGATAGCAACA 58.443 43.478 0.00 0.00 0.00 3.33
175 176 5.158141 TCCCCATTAGAGAGATAGCAACAT 58.842 41.667 0.00 0.00 0.00 2.71
176 177 6.322931 TCCCCATTAGAGAGATAGCAACATA 58.677 40.000 0.00 0.00 0.00 2.29
177 178 6.787458 TCCCCATTAGAGAGATAGCAACATAA 59.213 38.462 0.00 0.00 0.00 1.90
178 179 7.038729 TCCCCATTAGAGAGATAGCAACATAAG 60.039 40.741 0.00 0.00 0.00 1.73
179 180 7.256475 CCCCATTAGAGAGATAGCAACATAAGT 60.256 40.741 0.00 0.00 0.00 2.24
180 181 8.807118 CCCATTAGAGAGATAGCAACATAAGTA 58.193 37.037 0.00 0.00 0.00 2.24
207 208 9.938280 TGTTACTGCTTTATGTTACTACTCATT 57.062 29.630 0.00 0.00 0.00 2.57
257 258 7.996098 AAGTTTCGATAAAGAAAATGAGGGA 57.004 32.000 0.00 0.00 41.18 4.20
284 285 0.736325 AAATCGGAGGAAGACGTGCG 60.736 55.000 0.00 0.00 44.42 5.34
285 286 1.874345 AATCGGAGGAAGACGTGCGT 61.874 55.000 0.00 0.00 43.74 5.24
286 287 1.028330 ATCGGAGGAAGACGTGCGTA 61.028 55.000 0.00 0.00 43.74 4.42
287 288 1.028330 TCGGAGGAAGACGTGCGTAT 61.028 55.000 0.00 0.00 43.74 3.06
294 295 1.852895 GAAGACGTGCGTATGTGGATC 59.147 52.381 2.08 0.00 0.00 3.36
373 374 4.063967 ACGCCTCGAATGCACGGA 62.064 61.111 7.30 0.00 0.00 4.69
409 410 9.924650 TTCTGGAACTGATAAAAAGTACTACTC 57.075 33.333 0.00 0.00 35.89 2.59
410 411 8.529476 TCTGGAACTGATAAAAAGTACTACTCC 58.471 37.037 0.00 0.00 0.00 3.85
411 412 7.318141 TGGAACTGATAAAAAGTACTACTCCG 58.682 38.462 0.00 0.00 0.00 4.63
417 418 8.970691 TGATAAAAAGTACTACTCCGTACAAC 57.029 34.615 0.00 0.00 41.65 3.32
464 491 4.772231 TTCGGGACTAGCCGCCCT 62.772 66.667 12.54 0.00 42.40 5.19
478 505 4.828409 CCCTCATATGCGGGCAAT 57.172 55.556 17.75 0.00 32.66 3.56
479 506 2.260247 CCCTCATATGCGGGCAATG 58.740 57.895 17.75 3.79 32.66 2.82
480 507 0.250858 CCCTCATATGCGGGCAATGA 60.251 55.000 17.75 13.74 32.66 2.57
481 508 0.877071 CCTCATATGCGGGCAATGAC 59.123 55.000 3.62 0.00 0.00 3.06
482 509 1.544093 CCTCATATGCGGGCAATGACT 60.544 52.381 3.62 0.00 0.00 3.41
483 510 2.224606 CTCATATGCGGGCAATGACTT 58.775 47.619 0.00 0.00 0.00 3.01
484 511 2.221169 TCATATGCGGGCAATGACTTC 58.779 47.619 0.00 0.00 0.00 3.01
485 512 2.158769 TCATATGCGGGCAATGACTTCT 60.159 45.455 0.00 0.00 0.00 2.85
486 513 1.953559 TATGCGGGCAATGACTTCTC 58.046 50.000 0.00 0.00 0.00 2.87
487 514 0.254178 ATGCGGGCAATGACTTCTCT 59.746 50.000 0.00 0.00 0.00 3.10
488 515 0.674581 TGCGGGCAATGACTTCTCTG 60.675 55.000 0.00 0.00 0.00 3.35
489 516 1.986575 GCGGGCAATGACTTCTCTGC 61.987 60.000 0.00 0.00 0.00 4.26
490 517 0.674581 CGGGCAATGACTTCTCTGCA 60.675 55.000 0.00 0.00 36.50 4.41
491 518 1.093159 GGGCAATGACTTCTCTGCAG 58.907 55.000 7.63 7.63 36.50 4.41
492 519 1.093159 GGCAATGACTTCTCTGCAGG 58.907 55.000 15.13 4.77 36.50 4.85
493 520 1.093159 GCAATGACTTCTCTGCAGGG 58.907 55.000 15.13 11.57 34.87 4.45
494 521 1.339438 GCAATGACTTCTCTGCAGGGA 60.339 52.381 13.72 13.72 34.87 4.20
495 522 2.630158 CAATGACTTCTCTGCAGGGAG 58.370 52.381 17.46 13.33 34.88 4.30
496 523 2.235650 CAATGACTTCTCTGCAGGGAGA 59.764 50.000 17.46 9.08 40.16 3.71
497 524 1.554836 TGACTTCTCTGCAGGGAGAG 58.445 55.000 17.46 18.14 42.37 3.20
498 525 0.823460 GACTTCTCTGCAGGGAGAGG 59.177 60.000 17.46 14.24 42.37 3.69
499 526 0.617249 ACTTCTCTGCAGGGAGAGGG 60.617 60.000 17.46 10.84 41.70 4.30
500 527 0.325110 CTTCTCTGCAGGGAGAGGGA 60.325 60.000 17.46 0.00 42.37 4.20
501 528 0.325110 TTCTCTGCAGGGAGAGGGAG 60.325 60.000 17.46 2.50 42.37 4.30
502 529 1.761667 CTCTGCAGGGAGAGGGAGG 60.762 68.421 8.28 0.00 36.57 4.30
503 530 2.767496 CTGCAGGGAGAGGGAGGG 60.767 72.222 5.57 0.00 0.00 4.30
504 531 4.421554 TGCAGGGAGAGGGAGGGG 62.422 72.222 0.00 0.00 0.00 4.79
505 532 4.423209 GCAGGGAGAGGGAGGGGT 62.423 72.222 0.00 0.00 0.00 4.95
506 533 2.456840 CAGGGAGAGGGAGGGGTT 59.543 66.667 0.00 0.00 0.00 4.11
507 534 1.690985 CAGGGAGAGGGAGGGGTTC 60.691 68.421 0.00 0.00 0.00 3.62
508 535 2.764547 GGGAGAGGGAGGGGTTCG 60.765 72.222 0.00 0.00 0.00 3.95
509 536 2.363361 GGAGAGGGAGGGGTTCGA 59.637 66.667 0.00 0.00 0.00 3.71
510 537 1.075151 GGAGAGGGAGGGGTTCGAT 60.075 63.158 0.00 0.00 0.00 3.59
531 558 3.447742 TCATCAATGAATCTCGTCGTGG 58.552 45.455 0.00 0.00 33.08 4.94
552 579 1.090625 CCGTCACCCAACGTGTTCAA 61.091 55.000 0.00 0.00 43.51 2.69
562 589 1.083401 CGTGTTCAACTGCTGCGTC 60.083 57.895 0.00 0.00 0.00 5.19
607 634 3.181967 GCTAGCGACAGTGCCACG 61.182 66.667 0.00 0.00 34.65 4.94
608 635 2.566529 CTAGCGACAGTGCCACGA 59.433 61.111 8.70 0.00 34.65 4.35
609 636 1.139734 CTAGCGACAGTGCCACGAT 59.860 57.895 8.70 5.33 34.65 3.73
684 717 2.550639 GGAACGCCACAGGTTAAGGTTA 60.551 50.000 0.00 0.00 0.00 2.85
735 768 1.531365 CCAATGGCCGGGCACATAT 60.531 57.895 35.30 15.43 0.00 1.78
756 789 3.842923 CGATCTGCCCGTCCTGCT 61.843 66.667 0.00 0.00 0.00 4.24
784 817 1.215423 ACCAACCAAGAAGCAGAAGGT 59.785 47.619 0.00 0.00 0.00 3.50
795 828 2.450502 AGAAGGTGCCACAGGGGT 60.451 61.111 0.00 0.00 39.65 4.95
829 862 1.133598 CGTCGCATCTACCAGTACCAA 59.866 52.381 0.00 0.00 0.00 3.67
867 900 1.004277 ACCAGCGAACTCTCTCTCTCT 59.996 52.381 0.00 0.00 0.00 3.10
869 902 2.632377 CAGCGAACTCTCTCTCTCTCT 58.368 52.381 0.00 0.00 0.00 3.10
870 903 3.009723 CAGCGAACTCTCTCTCTCTCTT 58.990 50.000 0.00 0.00 0.00 2.85
871 904 3.009723 AGCGAACTCTCTCTCTCTCTTG 58.990 50.000 0.00 0.00 0.00 3.02
873 906 2.097466 CGAACTCTCTCTCTCTCTTGCC 59.903 54.545 0.00 0.00 0.00 4.52
874 907 1.750193 ACTCTCTCTCTCTCTTGCCG 58.250 55.000 0.00 0.00 0.00 5.69
875 908 0.381801 CTCTCTCTCTCTCTTGCCGC 59.618 60.000 0.00 0.00 0.00 6.53
876 909 1.034838 TCTCTCTCTCTCTTGCCGCC 61.035 60.000 0.00 0.00 0.00 6.13
877 910 1.000270 TCTCTCTCTCTTGCCGCCT 60.000 57.895 0.00 0.00 0.00 5.52
878 911 1.034838 TCTCTCTCTCTTGCCGCCTC 61.035 60.000 0.00 0.00 0.00 4.70
879 912 2.015227 CTCTCTCTCTTGCCGCCTCC 62.015 65.000 0.00 0.00 0.00 4.30
962 995 7.784073 TGATCAGATTCTCTCCAAGATTCTACT 59.216 37.037 0.00 0.00 40.91 2.57
963 996 9.295825 GATCAGATTCTCTCCAAGATTCTACTA 57.704 37.037 0.00 0.00 40.91 1.82
964 997 8.690203 TCAGATTCTCTCCAAGATTCTACTAG 57.310 38.462 0.00 0.00 40.91 2.57
987 1020 0.036952 AGACGTGGCTGATTCACTGG 60.037 55.000 0.00 0.00 33.31 4.00
988 1021 1.003355 ACGTGGCTGATTCACTGGG 60.003 57.895 0.00 0.00 33.31 4.45
1013 1046 0.106819 CAGCCAATGGAGAAGAGGGG 60.107 60.000 2.05 0.00 0.00 4.79
1089 1122 1.517257 GAGTGACATGGTCGGCGAG 60.517 63.158 11.20 0.00 34.95 5.03
1104 1137 2.687566 GAGGGAGGGGCGGAAGAA 60.688 66.667 0.00 0.00 0.00 2.52
1109 1142 2.689034 AGGGGCGGAAGAAGAGGG 60.689 66.667 0.00 0.00 0.00 4.30
1341 1379 5.343307 TGCTTTGCTTCTTCCTTTTCTTT 57.657 34.783 0.00 0.00 0.00 2.52
1346 1384 4.932146 TGCTTCTTCCTTTTCTTTTTCCG 58.068 39.130 0.00 0.00 0.00 4.30
1358 1453 7.599998 CCTTTTCTTTTTCCGAACATCATGATT 59.400 33.333 5.16 0.00 0.00 2.57
1359 1454 8.885494 TTTTCTTTTTCCGAACATCATGATTT 57.115 26.923 5.16 4.24 0.00 2.17
1402 1497 7.337942 AGAATTAAGGCTTGACCATAACTGAAG 59.662 37.037 10.69 0.00 43.14 3.02
1410 1505 6.621596 GCTTGACCATAACTGAAGTGCTTAAG 60.622 42.308 0.00 0.00 0.00 1.85
1469 1565 2.561478 TGTAGAACCAAACCAGGAGC 57.439 50.000 0.00 0.00 0.00 4.70
1649 1882 6.149973 ACATGATATTGATAGGAAATGTGCGG 59.850 38.462 0.00 0.00 0.00 5.69
1771 2026 4.802999 AGTAAAGTAGTTCTGGTACACGC 58.197 43.478 0.00 0.00 0.00 5.34
1831 2108 7.167535 ACAAACCCCATATGATTTTTCTTTGG 58.832 34.615 3.65 0.00 0.00 3.28
1860 4220 3.973305 ACAACCCCATTGGATTTTTCTGT 59.027 39.130 3.62 0.00 43.20 3.41
1867 7200 6.372381 CCCCATTGGATTTTTCTGTCATTTTC 59.628 38.462 3.62 0.00 35.39 2.29
1873 7206 6.108687 GGATTTTTCTGTCATTTTCCATCCC 58.891 40.000 0.00 0.00 0.00 3.85
1884 7217 2.520982 CCATCCCGAGCCGGTCTA 60.521 66.667 1.90 0.00 46.80 2.59
1885 7218 2.131709 CCATCCCGAGCCGGTCTAA 61.132 63.158 1.90 0.00 46.80 2.10
1939 7275 2.981560 GACCAGTGGCATTGCACCG 61.982 63.158 9.78 0.00 0.00 4.94
1947 7283 1.210155 GCATTGCACCGGTTCAGAC 59.790 57.895 2.97 0.00 0.00 3.51
1974 7310 3.927758 CAGAGTCTTCACTGCATCAGAAG 59.072 47.826 13.68 13.68 39.98 2.85
1984 7320 5.241285 TCACTGCATCAGAAGCAAATTTGTA 59.759 36.000 19.03 0.00 42.17 2.41
2030 7371 9.135843 TGATCTCAAACACAACTACTAATAACG 57.864 33.333 0.00 0.00 0.00 3.18
2031 7372 9.136952 GATCTCAAACACAACTACTAATAACGT 57.863 33.333 0.00 0.00 0.00 3.99
2051 7551 3.181526 CGTAAGTGAACTGAATGCAGCTC 60.182 47.826 0.00 0.00 46.26 4.09
2225 7731 2.609299 TTCATCGGCCAGGACCCA 60.609 61.111 2.24 0.00 0.00 4.51
2258 7764 2.828868 GCCGGCACCATCTCCATA 59.171 61.111 24.80 0.00 0.00 2.74
2459 7965 1.127343 TGGTCATCGCCATGTGGATA 58.873 50.000 2.55 0.00 37.39 2.59
2718 8228 9.165035 CAATAATGCATGTTTTTCCCTATTTGT 57.835 29.630 0.00 0.00 0.00 2.83
3165 8791 1.332028 GCCATCTTAAATGTCGTCGCG 60.332 52.381 0.00 0.00 0.00 5.87
3198 8824 1.873698 TAGGCCTTGTGTTGTTCGTC 58.126 50.000 12.58 0.00 0.00 4.20
3368 8994 8.246180 GCATTTGACTGAATTCCAAATCTTCTA 58.754 33.333 14.53 0.00 38.13 2.10
3371 8997 8.924511 TTGACTGAATTCCAAATCTTCTAGTT 57.075 30.769 2.27 0.00 0.00 2.24
3480 9143 4.279043 GGTGTTGCCGTTGGTGCC 62.279 66.667 0.00 0.00 0.00 5.01
3514 9177 3.615056 TGTCGTTGCCTATGTTAACATCG 59.385 43.478 24.00 18.93 37.76 3.84
3573 9236 7.091443 CGATCCTAGGTTATGTTCTTGGATAC 58.909 42.308 9.08 1.92 42.59 2.24
3586 9249 5.353394 TCTTGGATACCATGTGAAGGTAC 57.647 43.478 0.00 0.00 43.90 3.34
3638 9306 6.882656 ACCTATCAGTCGACTACTAGTTACA 58.117 40.000 19.57 0.00 35.76 2.41
3640 9308 7.826252 ACCTATCAGTCGACTACTAGTTACAAA 59.174 37.037 19.57 0.00 35.76 2.83
3641 9309 8.838365 CCTATCAGTCGACTACTAGTTACAAAT 58.162 37.037 19.57 0.00 35.76 2.32
3672 9340 1.902508 GTCCTTGTGTCTCCTGGATCA 59.097 52.381 0.00 0.00 0.00 2.92
3673 9341 2.093764 GTCCTTGTGTCTCCTGGATCAG 60.094 54.545 0.00 0.00 0.00 2.90
3678 9349 2.300152 TGTGTCTCCTGGATCAGTGTTC 59.700 50.000 0.00 0.00 0.00 3.18
3693 9368 3.574396 CAGTGTTCTGGTCCTAACTCTCA 59.426 47.826 8.44 0.00 37.97 3.27
3745 9429 2.743718 CTGCTCGGGACACTGGTT 59.256 61.111 0.00 0.00 0.00 3.67
3818 9504 3.811497 GGTTAGCTTGGTTAACTGTTCGT 59.189 43.478 5.42 0.00 31.55 3.85
3841 9527 6.032775 CGTTCATCACTGTAATCAAACATTGC 59.967 38.462 0.00 0.00 31.93 3.56
4124 9847 8.173130 GGTTAACTACGGTTCTTTCAATATGTG 58.827 37.037 5.42 0.00 36.92 3.21
4159 9886 2.017049 GGAACATTTGTAGGCGCAGAT 58.983 47.619 10.83 0.00 0.00 2.90
4192 9919 3.738982 TGTTCCTCAAGATCGAGCAAAA 58.261 40.909 2.38 0.00 0.00 2.44
4210 9937 5.054477 GCAAAAGGTAACAGTGAGTCAGTA 58.946 41.667 0.00 0.00 41.41 2.74
4231 9958 0.749649 CGCAGGCTCCACTAGAGAAT 59.250 55.000 0.00 0.00 46.50 2.40
4233 9960 1.202627 GCAGGCTCCACTAGAGAATGG 60.203 57.143 0.00 0.00 46.50 3.16
4257 9984 7.147828 TGGAGAACATACTATCTCTGTTTCTGG 60.148 40.741 3.14 0.00 41.45 3.86
4284 10011 7.894376 ATTAGACATTTTGGCAGTTCAATTG 57.106 32.000 0.00 0.00 0.00 2.32
4296 10023 5.495502 GCAGTTCAATTGAAACTGCAAAAG 58.504 37.500 37.45 21.65 46.28 2.27
4314 10041 7.693952 TGCAAAAGCGTCTTATATTTAGGAAG 58.306 34.615 0.00 0.00 0.00 3.46
4318 10045 9.535878 AAAAGCGTCTTATATTTAGGAAGAGAG 57.464 33.333 0.00 0.00 30.04 3.20
4336 10063 4.016479 AGAGAGGGTGTATTACTCAAGGGA 60.016 45.833 0.00 0.00 33.76 4.20
4361 10088 9.827411 GACACTTGATTTTCTGTAATTTCTACC 57.173 33.333 0.00 0.00 0.00 3.18
4365 10092 9.831737 CTTGATTTTCTGTAATTTCTACCACTG 57.168 33.333 0.00 0.00 0.00 3.66
4425 10152 2.223711 GGTGGCACTAGTGTTGTTTTGG 60.224 50.000 23.44 0.00 0.00 3.28
4464 10192 6.861055 GGTTGTGATTAGTAACATGGTGTTTG 59.139 38.462 0.00 0.00 41.45 2.93
4517 10245 8.993121 GTCATCAGGTATCTTGGTGTAATTATG 58.007 37.037 0.00 0.00 0.00 1.90
4534 10262 8.394877 TGTAATTATGAAACAATCAGTTAGGCG 58.605 33.333 0.00 0.00 42.53 5.52
4541 10269 6.653320 TGAAACAATCAGTTAGGCGTAAAGAT 59.347 34.615 0.00 5.19 40.26 2.40
4565 10293 2.017782 CCGAGATTTCTCTCTGACGGA 58.982 52.381 0.00 0.00 44.92 4.69
4568 10296 2.678836 GAGATTTCTCTCTGACGGACGA 59.321 50.000 0.00 0.00 43.92 4.20
4569 10297 3.082548 AGATTTCTCTCTGACGGACGAA 58.917 45.455 0.00 0.00 0.00 3.85
4578 11653 2.034939 TCTGACGGACGAACTTTGCTAA 59.965 45.455 0.00 0.00 0.00 3.09
4585 11660 3.490526 GGACGAACTTTGCTAAACGTACA 59.509 43.478 10.34 0.00 35.16 2.90
4603 11678 6.094719 ACGTACACGCTGATTTTACAGATTA 58.905 36.000 0.85 0.00 44.43 1.75
4607 11682 7.478520 ACACGCTGATTTTACAGATTATACC 57.521 36.000 0.00 0.00 39.94 2.73
4610 11685 5.120208 CGCTGATTTTACAGATTATACCGGG 59.880 44.000 6.32 0.00 39.94 5.73
4611 11686 5.411669 GCTGATTTTACAGATTATACCGGGG 59.588 44.000 6.32 0.00 39.94 5.73
4612 11687 6.743208 GCTGATTTTACAGATTATACCGGGGA 60.743 42.308 6.32 0.00 39.94 4.81
4632 11707 2.427453 GAGGGCTGACGTGAGATTAGAA 59.573 50.000 6.09 0.00 0.00 2.10
4641 11716 9.632807 GCTGACGTGAGATTAGAAGAAATATAT 57.367 33.333 6.09 0.00 0.00 0.86
4666 11741 3.823304 ACCAATTTCTTCTGCTCCTTGTC 59.177 43.478 0.00 0.00 0.00 3.18
4669 11744 0.321671 TTCTTCTGCTCCTTGTCCGG 59.678 55.000 0.00 0.00 0.00 5.14
4716 11791 3.261137 GGGCTACAATAGATCCCCTACAC 59.739 52.174 0.00 0.00 0.00 2.90
4719 11794 5.778750 GGCTACAATAGATCCCCTACACTTA 59.221 44.000 0.00 0.00 0.00 2.24
4722 11797 6.688073 ACAATAGATCCCCTACACTTATGG 57.312 41.667 0.00 0.00 0.00 2.74
4729 11804 2.574369 CCCCTACACTTATGGGTTGTCA 59.426 50.000 0.00 0.00 39.31 3.58
4746 11821 4.603094 TGTCAGATACCCTGTCCTTAGA 57.397 45.455 0.00 0.00 43.38 2.10
4747 11822 4.537751 TGTCAGATACCCTGTCCTTAGAG 58.462 47.826 0.00 0.00 43.38 2.43
4748 11823 3.319689 GTCAGATACCCTGTCCTTAGAGC 59.680 52.174 0.00 0.00 43.38 4.09
4749 11824 2.630580 CAGATACCCTGTCCTTAGAGCC 59.369 54.545 0.00 0.00 38.10 4.70
4750 11825 2.247635 AGATACCCTGTCCTTAGAGCCA 59.752 50.000 0.00 0.00 0.00 4.75
4751 11826 1.861982 TACCCTGTCCTTAGAGCCAC 58.138 55.000 0.00 0.00 0.00 5.01
4752 11827 0.178903 ACCCTGTCCTTAGAGCCACA 60.179 55.000 0.00 0.00 0.00 4.17
4753 11828 1.207791 CCCTGTCCTTAGAGCCACAT 58.792 55.000 0.00 0.00 0.00 3.21
4754 11829 2.292918 ACCCTGTCCTTAGAGCCACATA 60.293 50.000 0.00 0.00 0.00 2.29
4755 11830 2.103263 CCCTGTCCTTAGAGCCACATAC 59.897 54.545 0.00 0.00 0.00 2.39
4756 11831 3.034635 CCTGTCCTTAGAGCCACATACT 58.965 50.000 0.00 0.00 0.00 2.12
4757 11832 3.181471 CCTGTCCTTAGAGCCACATACTG 60.181 52.174 0.00 0.00 0.00 2.74
4758 11833 3.701542 CTGTCCTTAGAGCCACATACTGA 59.298 47.826 0.00 0.00 0.00 3.41
4759 11834 4.290093 TGTCCTTAGAGCCACATACTGAT 58.710 43.478 0.00 0.00 0.00 2.90
4760 11835 4.100035 TGTCCTTAGAGCCACATACTGATG 59.900 45.833 0.00 0.00 39.16 3.07
4761 11836 4.342378 GTCCTTAGAGCCACATACTGATGA 59.658 45.833 0.00 0.00 36.48 2.92
4762 11837 4.962362 TCCTTAGAGCCACATACTGATGAA 59.038 41.667 0.00 0.00 36.48 2.57
4763 11838 5.604231 TCCTTAGAGCCACATACTGATGAAT 59.396 40.000 0.00 0.00 36.48 2.57
4764 11839 5.931146 CCTTAGAGCCACATACTGATGAATC 59.069 44.000 0.00 0.00 36.48 2.52
4765 11840 6.239543 CCTTAGAGCCACATACTGATGAATCT 60.240 42.308 0.00 0.00 36.48 2.40
4766 11841 4.958509 AGAGCCACATACTGATGAATCTG 58.041 43.478 0.00 0.00 36.48 2.90
4767 11842 4.652881 AGAGCCACATACTGATGAATCTGA 59.347 41.667 4.41 0.00 36.48 3.27
4768 11843 5.129980 AGAGCCACATACTGATGAATCTGAA 59.870 40.000 4.41 0.00 36.48 3.02
4769 11844 5.121811 AGCCACATACTGATGAATCTGAAC 58.878 41.667 4.41 0.00 36.48 3.18
4770 11845 5.104610 AGCCACATACTGATGAATCTGAACT 60.105 40.000 4.41 0.00 36.48 3.01
4771 11846 5.007430 GCCACATACTGATGAATCTGAACTG 59.993 44.000 4.41 2.16 36.48 3.16
4772 11847 5.526479 CCACATACTGATGAATCTGAACTGG 59.474 44.000 4.41 0.94 36.48 4.00
4773 11848 6.343703 CACATACTGATGAATCTGAACTGGA 58.656 40.000 4.41 0.00 36.48 3.86
4774 11849 6.479331 CACATACTGATGAATCTGAACTGGAG 59.521 42.308 4.41 0.00 36.48 3.86
4775 11850 6.382282 ACATACTGATGAATCTGAACTGGAGA 59.618 38.462 4.41 0.00 36.48 3.71
4776 11851 5.954153 ACTGATGAATCTGAACTGGAGAT 57.046 39.130 4.41 0.00 0.00 2.75
4777 11852 6.310764 ACTGATGAATCTGAACTGGAGATT 57.689 37.500 4.41 0.00 41.83 2.40
4790 11865 8.082672 TGAACTGGAGATTCAGAAGATTATCA 57.917 34.615 0.00 0.00 38.11 2.15
4791 11866 8.542926 TGAACTGGAGATTCAGAAGATTATCAA 58.457 33.333 0.00 0.00 38.11 2.57
4792 11867 9.558396 GAACTGGAGATTCAGAAGATTATCAAT 57.442 33.333 0.00 0.00 38.11 2.57
4793 11868 9.917887 AACTGGAGATTCAGAAGATTATCAATT 57.082 29.630 0.00 0.00 38.11 2.32
4794 11869 9.917887 ACTGGAGATTCAGAAGATTATCAATTT 57.082 29.630 0.00 0.00 38.11 1.82
4796 11871 8.627403 TGGAGATTCAGAAGATTATCAATTTGC 58.373 33.333 0.00 0.00 0.00 3.68
4797 11872 8.627403 GGAGATTCAGAAGATTATCAATTTGCA 58.373 33.333 0.00 0.00 0.00 4.08
4799 11874 9.798994 AGATTCAGAAGATTATCAATTTGCAAC 57.201 29.630 0.00 0.00 0.00 4.17
4800 11875 9.577110 GATTCAGAAGATTATCAATTTGCAACA 57.423 29.630 0.00 0.00 0.00 3.33
4801 11876 8.746922 TTCAGAAGATTATCAATTTGCAACAC 57.253 30.769 0.00 0.00 0.00 3.32
4802 11877 7.884257 TCAGAAGATTATCAATTTGCAACACA 58.116 30.769 0.00 0.00 0.00 3.72
4803 11878 8.525316 TCAGAAGATTATCAATTTGCAACACAT 58.475 29.630 0.00 0.00 0.00 3.21
4804 11879 8.804743 CAGAAGATTATCAATTTGCAACACATC 58.195 33.333 0.00 0.00 0.00 3.06
4805 11880 8.525316 AGAAGATTATCAATTTGCAACACATCA 58.475 29.630 0.00 0.00 0.00 3.07
4806 11881 9.309516 GAAGATTATCAATTTGCAACACATCAT 57.690 29.630 0.00 0.00 0.00 2.45
4817 11892 7.990541 TTGCAACACATCATAAATAATCTGC 57.009 32.000 0.00 0.00 0.00 4.26
4818 11893 6.506147 TGCAACACATCATAAATAATCTGCC 58.494 36.000 0.00 0.00 0.00 4.85
4819 11894 6.096564 TGCAACACATCATAAATAATCTGCCA 59.903 34.615 0.00 0.00 0.00 4.92
4820 11895 6.639686 GCAACACATCATAAATAATCTGCCAG 59.360 38.462 0.00 0.00 0.00 4.85
4821 11896 7.682741 GCAACACATCATAAATAATCTGCCAGT 60.683 37.037 0.00 0.00 0.00 4.00
4822 11897 7.886629 ACACATCATAAATAATCTGCCAGTT 57.113 32.000 0.00 0.00 0.00 3.16
4823 11898 7.709947 ACACATCATAAATAATCTGCCAGTTG 58.290 34.615 0.00 0.00 0.00 3.16
4824 11899 6.639686 CACATCATAAATAATCTGCCAGTTGC 59.360 38.462 0.00 0.00 41.77 4.17
4836 11911 3.207474 GCCAGTTGCATTTAGTGAGTG 57.793 47.619 0.00 0.00 40.77 3.51
4837 11912 2.813754 GCCAGTTGCATTTAGTGAGTGA 59.186 45.455 0.00 0.00 40.77 3.41
4838 11913 3.120060 GCCAGTTGCATTTAGTGAGTGAG 60.120 47.826 0.00 0.00 40.77 3.51
4839 11914 4.067896 CCAGTTGCATTTAGTGAGTGAGT 58.932 43.478 0.00 0.00 0.00 3.41
4840 11915 5.237815 CCAGTTGCATTTAGTGAGTGAGTA 58.762 41.667 0.00 0.00 0.00 2.59
4841 11916 5.877012 CCAGTTGCATTTAGTGAGTGAGTAT 59.123 40.000 0.00 0.00 0.00 2.12
4842 11917 7.041721 CCAGTTGCATTTAGTGAGTGAGTATA 58.958 38.462 0.00 0.00 0.00 1.47
4843 11918 7.712639 CCAGTTGCATTTAGTGAGTGAGTATAT 59.287 37.037 0.00 0.00 0.00 0.86
4844 11919 9.750125 CAGTTGCATTTAGTGAGTGAGTATATA 57.250 33.333 0.00 0.00 0.00 0.86
4845 11920 9.973450 AGTTGCATTTAGTGAGTGAGTATATAG 57.027 33.333 0.00 0.00 0.00 1.31
4846 11921 9.197694 GTTGCATTTAGTGAGTGAGTATATAGG 57.802 37.037 0.00 0.00 0.00 2.57
4847 11922 8.478775 TGCATTTAGTGAGTGAGTATATAGGT 57.521 34.615 0.00 0.00 0.00 3.08
4848 11923 8.360390 TGCATTTAGTGAGTGAGTATATAGGTG 58.640 37.037 0.00 0.00 0.00 4.00
4849 11924 8.361139 GCATTTAGTGAGTGAGTATATAGGTGT 58.639 37.037 0.00 0.00 0.00 4.16
4850 11925 9.900710 CATTTAGTGAGTGAGTATATAGGTGTC 57.099 37.037 0.00 0.00 0.00 3.67
4851 11926 9.642343 ATTTAGTGAGTGAGTATATAGGTGTCA 57.358 33.333 0.00 0.00 0.00 3.58
4852 11927 6.945938 AGTGAGTGAGTATATAGGTGTCAC 57.054 41.667 0.00 0.00 38.24 3.67
4853 11928 6.424032 AGTGAGTGAGTATATAGGTGTCACA 58.576 40.000 5.12 0.00 40.03 3.58
4854 11929 6.890268 AGTGAGTGAGTATATAGGTGTCACAA 59.110 38.462 5.12 0.00 40.03 3.33
4855 11930 7.396339 AGTGAGTGAGTATATAGGTGTCACAAA 59.604 37.037 5.12 0.00 40.03 2.83
4856 11931 8.198109 GTGAGTGAGTATATAGGTGTCACAAAT 58.802 37.037 5.12 0.08 40.03 2.32
4857 11932 8.758829 TGAGTGAGTATATAGGTGTCACAAATT 58.241 33.333 5.12 0.00 40.03 1.82
4870 11945 9.612066 AGGTGTCACAAATTAAAACATTTTCAT 57.388 25.926 5.12 0.00 0.00 2.57
4885 11960 9.598517 AAACATTTTCATTGTGAATGTGTTAGT 57.401 25.926 16.47 6.46 41.65 2.24
4886 11961 8.578308 ACATTTTCATTGTGAATGTGTTAGTG 57.422 30.769 14.86 0.00 41.14 2.74
4887 11962 8.412456 ACATTTTCATTGTGAATGTGTTAGTGA 58.588 29.630 14.86 0.00 41.14 3.41
4888 11963 8.908678 CATTTTCATTGTGAATGTGTTAGTGAG 58.091 33.333 0.00 0.00 36.11 3.51
4889 11964 7.800155 TTTCATTGTGAATGTGTTAGTGAGA 57.200 32.000 0.00 0.00 36.11 3.27
4890 11965 7.425577 TTCATTGTGAATGTGTTAGTGAGAG 57.574 36.000 0.00 0.00 39.87 3.20
4891 11966 6.524734 TCATTGTGAATGTGTTAGTGAGAGT 58.475 36.000 0.00 0.00 39.87 3.24
4892 11967 6.424812 TCATTGTGAATGTGTTAGTGAGAGTG 59.575 38.462 0.00 0.00 39.87 3.51
4893 11968 4.631131 TGTGAATGTGTTAGTGAGAGTGG 58.369 43.478 0.00 0.00 0.00 4.00
4894 11969 4.343814 TGTGAATGTGTTAGTGAGAGTGGA 59.656 41.667 0.00 0.00 0.00 4.02
4895 11970 5.012046 TGTGAATGTGTTAGTGAGAGTGGAT 59.988 40.000 0.00 0.00 0.00 3.41
4896 11971 5.349817 GTGAATGTGTTAGTGAGAGTGGATG 59.650 44.000 0.00 0.00 0.00 3.51
4897 11972 5.012046 TGAATGTGTTAGTGAGAGTGGATGT 59.988 40.000 0.00 0.00 0.00 3.06
4898 11973 4.257267 TGTGTTAGTGAGAGTGGATGTG 57.743 45.455 0.00 0.00 0.00 3.21
4899 11974 3.895041 TGTGTTAGTGAGAGTGGATGTGA 59.105 43.478 0.00 0.00 0.00 3.58
4900 11975 4.238514 GTGTTAGTGAGAGTGGATGTGAC 58.761 47.826 0.00 0.00 0.00 3.67
4901 11976 3.258372 TGTTAGTGAGAGTGGATGTGACC 59.742 47.826 0.00 0.00 0.00 4.02
4902 11977 1.270907 AGTGAGAGTGGATGTGACCC 58.729 55.000 0.00 0.00 0.00 4.46
4903 11978 0.976641 GTGAGAGTGGATGTGACCCA 59.023 55.000 0.00 0.00 0.00 4.51
4904 11979 1.556911 GTGAGAGTGGATGTGACCCAT 59.443 52.381 0.00 0.00 35.91 4.00
4905 11980 2.766263 GTGAGAGTGGATGTGACCCATA 59.234 50.000 0.00 0.00 35.91 2.74
4906 11981 3.033909 TGAGAGTGGATGTGACCCATAG 58.966 50.000 0.00 0.00 35.91 2.23
4907 11982 2.366916 GAGAGTGGATGTGACCCATAGG 59.633 54.545 0.00 0.00 35.91 2.57
4917 11992 2.609046 ACCCATAGGTCCACTCAGC 58.391 57.895 0.00 0.00 46.45 4.26
4918 11993 0.983378 ACCCATAGGTCCACTCAGCC 60.983 60.000 0.00 0.00 46.45 4.85
4919 11994 0.982852 CCCATAGGTCCACTCAGCCA 60.983 60.000 0.00 0.00 0.00 4.75
4920 11995 0.179000 CCATAGGTCCACTCAGCCAC 59.821 60.000 0.00 0.00 0.00 5.01
4921 11996 0.179000 CATAGGTCCACTCAGCCACC 59.821 60.000 0.00 0.00 0.00 4.61
4922 11997 0.983378 ATAGGTCCACTCAGCCACCC 60.983 60.000 0.00 0.00 0.00 4.61
4923 11998 2.395180 TAGGTCCACTCAGCCACCCA 62.395 60.000 0.00 0.00 0.00 4.51
4924 11999 2.829384 GGTCCACTCAGCCACCCAA 61.829 63.158 0.00 0.00 0.00 4.12
4925 12000 1.302832 GTCCACTCAGCCACCCAAG 60.303 63.158 0.00 0.00 0.00 3.61
4926 12001 1.461268 TCCACTCAGCCACCCAAGA 60.461 57.895 0.00 0.00 0.00 3.02
4927 12002 1.059584 TCCACTCAGCCACCCAAGAA 61.060 55.000 0.00 0.00 0.00 2.52
4928 12003 0.607489 CCACTCAGCCACCCAAGAAG 60.607 60.000 0.00 0.00 0.00 2.85
4929 12004 0.397941 CACTCAGCCACCCAAGAAGA 59.602 55.000 0.00 0.00 0.00 2.87
4930 12005 0.689623 ACTCAGCCACCCAAGAAGAG 59.310 55.000 0.00 0.00 0.00 2.85
4931 12006 0.035630 CTCAGCCACCCAAGAAGAGG 60.036 60.000 0.00 0.00 0.00 3.69
4932 12007 0.473694 TCAGCCACCCAAGAAGAGGA 60.474 55.000 0.00 0.00 0.00 3.71
4933 12008 0.035630 CAGCCACCCAAGAAGAGGAG 60.036 60.000 0.00 0.00 0.00 3.69
4934 12009 0.178891 AGCCACCCAAGAAGAGGAGA 60.179 55.000 0.00 0.00 0.00 3.71
4935 12010 0.693049 GCCACCCAAGAAGAGGAGAA 59.307 55.000 0.00 0.00 0.00 2.87
4936 12011 1.073923 GCCACCCAAGAAGAGGAGAAA 59.926 52.381 0.00 0.00 0.00 2.52
4937 12012 2.291217 GCCACCCAAGAAGAGGAGAAAT 60.291 50.000 0.00 0.00 0.00 2.17
4938 12013 3.615155 CCACCCAAGAAGAGGAGAAATC 58.385 50.000 0.00 0.00 0.00 2.17
4939 12014 3.265479 CCACCCAAGAAGAGGAGAAATCT 59.735 47.826 0.00 0.00 0.00 2.40
4940 12015 4.260170 CACCCAAGAAGAGGAGAAATCTG 58.740 47.826 0.00 0.00 0.00 2.90
4941 12016 3.265479 ACCCAAGAAGAGGAGAAATCTGG 59.735 47.826 0.00 0.00 0.00 3.86
4942 12017 3.521126 CCCAAGAAGAGGAGAAATCTGGA 59.479 47.826 0.00 0.00 0.00 3.86
4943 12018 4.512484 CCAAGAAGAGGAGAAATCTGGAC 58.488 47.826 0.00 0.00 0.00 4.02
4944 12019 4.019860 CCAAGAAGAGGAGAAATCTGGACA 60.020 45.833 0.00 0.00 0.00 4.02
4945 12020 4.817318 AGAAGAGGAGAAATCTGGACAC 57.183 45.455 0.00 0.00 0.00 3.67
4946 12021 4.163427 AGAAGAGGAGAAATCTGGACACA 58.837 43.478 0.00 0.00 0.00 3.72
4947 12022 4.594920 AGAAGAGGAGAAATCTGGACACAA 59.405 41.667 0.00 0.00 0.00 3.33
4948 12023 5.250313 AGAAGAGGAGAAATCTGGACACAAT 59.750 40.000 0.00 0.00 0.00 2.71
4949 12024 6.441924 AGAAGAGGAGAAATCTGGACACAATA 59.558 38.462 0.00 0.00 0.00 1.90
4950 12025 6.232581 AGAGGAGAAATCTGGACACAATAG 57.767 41.667 0.00 0.00 0.00 1.73
4951 12026 5.130145 AGAGGAGAAATCTGGACACAATAGG 59.870 44.000 0.00 0.00 0.00 2.57
4952 12027 5.032846 AGGAGAAATCTGGACACAATAGGA 58.967 41.667 0.00 0.00 0.00 2.94
4953 12028 5.104735 AGGAGAAATCTGGACACAATAGGAC 60.105 44.000 0.00 0.00 0.00 3.85
4954 12029 5.338381 GGAGAAATCTGGACACAATAGGACA 60.338 44.000 0.00 0.00 0.00 4.02
4955 12030 6.126863 AGAAATCTGGACACAATAGGACAA 57.873 37.500 0.00 0.00 0.00 3.18
4956 12031 6.176183 AGAAATCTGGACACAATAGGACAAG 58.824 40.000 0.00 0.00 0.00 3.16
4957 12032 3.981071 TCTGGACACAATAGGACAAGG 57.019 47.619 0.00 0.00 0.00 3.61
4958 12033 2.027192 TCTGGACACAATAGGACAAGGC 60.027 50.000 0.00 0.00 0.00 4.35
4959 12034 1.985159 TGGACACAATAGGACAAGGCT 59.015 47.619 0.00 0.00 0.00 4.58
4960 12035 2.375174 TGGACACAATAGGACAAGGCTT 59.625 45.455 0.00 0.00 0.00 4.35
4961 12036 3.010420 GGACACAATAGGACAAGGCTTC 58.990 50.000 0.00 0.00 0.00 3.86
4962 12037 3.559171 GGACACAATAGGACAAGGCTTCA 60.559 47.826 0.00 0.00 0.00 3.02
4963 12038 3.412386 ACACAATAGGACAAGGCTTCAC 58.588 45.455 0.00 0.00 0.00 3.18
4964 12039 3.181445 ACACAATAGGACAAGGCTTCACA 60.181 43.478 0.00 0.00 0.00 3.58
4965 12040 3.820467 CACAATAGGACAAGGCTTCACAA 59.180 43.478 0.00 0.00 0.00 3.33
4966 12041 4.278170 CACAATAGGACAAGGCTTCACAAA 59.722 41.667 0.00 0.00 0.00 2.83
4967 12042 4.892934 ACAATAGGACAAGGCTTCACAAAA 59.107 37.500 0.00 0.00 0.00 2.44
4968 12043 5.010012 ACAATAGGACAAGGCTTCACAAAAG 59.990 40.000 0.00 0.00 0.00 2.27
4969 12044 3.018423 AGGACAAGGCTTCACAAAAGT 57.982 42.857 0.00 0.00 0.00 2.66
4970 12045 2.689983 AGGACAAGGCTTCACAAAAGTG 59.310 45.455 0.00 0.00 0.00 3.16
4971 12046 2.427095 GGACAAGGCTTCACAAAAGTGT 59.573 45.455 0.00 0.00 39.07 3.55
4972 12047 3.489229 GGACAAGGCTTCACAAAAGTGTC 60.489 47.826 0.00 0.00 35.07 3.67
4973 12048 3.356290 ACAAGGCTTCACAAAAGTGTCT 58.644 40.909 0.00 0.00 35.07 3.41
4974 12049 4.523083 ACAAGGCTTCACAAAAGTGTCTA 58.477 39.130 0.00 0.00 35.07 2.59
4975 12050 4.947388 ACAAGGCTTCACAAAAGTGTCTAA 59.053 37.500 0.00 0.00 35.07 2.10
4976 12051 5.417580 ACAAGGCTTCACAAAAGTGTCTAAA 59.582 36.000 0.00 0.00 35.07 1.85
4977 12052 6.071616 ACAAGGCTTCACAAAAGTGTCTAAAA 60.072 34.615 0.00 0.00 35.07 1.52
4978 12053 6.136541 AGGCTTCACAAAAGTGTCTAAAAG 57.863 37.500 0.00 0.00 35.07 2.27
4979 12054 4.740205 GGCTTCACAAAAGTGTCTAAAAGC 59.260 41.667 9.25 9.25 35.07 3.51
4980 12055 5.339990 GCTTCACAAAAGTGTCTAAAAGCA 58.660 37.500 11.62 0.00 36.74 3.91
4981 12056 5.804979 GCTTCACAAAAGTGTCTAAAAGCAA 59.195 36.000 11.62 0.00 36.74 3.91
4982 12057 6.237569 GCTTCACAAAAGTGTCTAAAAGCAAC 60.238 38.462 11.62 0.00 36.74 4.17
4983 12058 5.328691 TCACAAAAGTGTCTAAAAGCAACG 58.671 37.500 0.00 0.00 35.07 4.10
4984 12059 5.122554 TCACAAAAGTGTCTAAAAGCAACGA 59.877 36.000 0.00 0.00 35.07 3.85
4985 12060 5.452302 CACAAAAGTGTCTAAAAGCAACGAG 59.548 40.000 0.00 0.00 35.07 4.18
4986 12061 4.813296 AAAGTGTCTAAAAGCAACGAGG 57.187 40.909 0.00 0.00 0.00 4.63
4987 12062 3.470645 AGTGTCTAAAAGCAACGAGGT 57.529 42.857 0.00 0.00 0.00 3.85
4988 12063 3.805207 AGTGTCTAAAAGCAACGAGGTT 58.195 40.909 0.00 0.00 40.25 3.50
4989 12064 3.808174 AGTGTCTAAAAGCAACGAGGTTC 59.192 43.478 0.00 0.00 36.83 3.62
4990 12065 2.798283 TGTCTAAAAGCAACGAGGTTCG 59.202 45.455 0.00 0.00 46.93 3.95
5002 12077 3.972706 CGAGGTTCGTGACAGTAAATG 57.027 47.619 0.00 0.00 34.72 2.32
5003 12078 2.092211 CGAGGTTCGTGACAGTAAATGC 59.908 50.000 0.00 0.00 34.72 3.56
5004 12079 3.064207 GAGGTTCGTGACAGTAAATGCA 58.936 45.455 0.00 0.00 0.00 3.96
5005 12080 3.674997 AGGTTCGTGACAGTAAATGCAT 58.325 40.909 0.00 0.00 0.00 3.96
5006 12081 3.436704 AGGTTCGTGACAGTAAATGCATG 59.563 43.478 0.00 0.00 0.00 4.06
5007 12082 3.188460 GGTTCGTGACAGTAAATGCATGT 59.812 43.478 0.00 0.00 0.00 3.21
5008 12083 4.394795 GTTCGTGACAGTAAATGCATGTC 58.605 43.478 9.90 9.90 42.90 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 9.310449 CTACTAGGGAGTAATATATGTGTGGTT 57.690 37.037 0.00 0.00 37.72 3.67
2 3 8.676020 TCTACTAGGGAGTAATATATGTGTGGT 58.324 37.037 0.00 0.00 37.72 4.16
3 4 9.179909 CTCTACTAGGGAGTAATATATGTGTGG 57.820 40.741 0.00 0.00 37.72 4.17
4 5 9.961264 TCTCTACTAGGGAGTAATATATGTGTG 57.039 37.037 12.56 0.00 37.72 3.82
6 7 9.621629 CCTCTCTACTAGGGAGTAATATATGTG 57.378 40.741 11.41 0.00 37.72 3.21
7 8 9.354108 ACCTCTCTACTAGGGAGTAATATATGT 57.646 37.037 11.41 0.00 37.72 2.29
18 19 8.015456 TCTATGTTACTACCTCTCTACTAGGGA 58.985 40.741 0.00 0.00 38.54 4.20
19 20 8.204903 TCTATGTTACTACCTCTCTACTAGGG 57.795 42.308 0.00 0.00 38.54 3.53
20 21 8.873144 ACTCTATGTTACTACCTCTCTACTAGG 58.127 40.741 0.00 0.00 40.20 3.02
23 24 9.438163 ACTACTCTATGTTACTACCTCTCTACT 57.562 37.037 0.00 0.00 0.00 2.57
27 28 9.829507 TGTTACTACTCTATGTTACTACCTCTC 57.170 37.037 0.00 0.00 0.00 3.20
30 31 9.352191 CCATGTTACTACTCTATGTTACTACCT 57.648 37.037 0.00 0.00 0.00 3.08
31 32 8.574737 CCCATGTTACTACTCTATGTTACTACC 58.425 40.741 0.00 0.00 0.00 3.18
32 33 8.081025 GCCCATGTTACTACTCTATGTTACTAC 58.919 40.741 0.00 0.00 0.00 2.73
33 34 8.003044 AGCCCATGTTACTACTCTATGTTACTA 58.997 37.037 0.00 0.00 0.00 1.82
34 35 6.839657 AGCCCATGTTACTACTCTATGTTACT 59.160 38.462 0.00 0.00 0.00 2.24
35 36 7.052142 AGCCCATGTTACTACTCTATGTTAC 57.948 40.000 0.00 0.00 0.00 2.50
36 37 7.670605 AAGCCCATGTTACTACTCTATGTTA 57.329 36.000 0.00 0.00 0.00 2.41
37 38 6.561519 AAGCCCATGTTACTACTCTATGTT 57.438 37.500 0.00 0.00 0.00 2.71
38 39 6.839657 AGTAAGCCCATGTTACTACTCTATGT 59.160 38.462 5.63 0.00 38.65 2.29
39 40 7.291411 AGTAAGCCCATGTTACTACTCTATG 57.709 40.000 5.63 0.00 38.65 2.23
40 41 9.603189 AATAGTAAGCCCATGTTACTACTCTAT 57.397 33.333 13.65 1.00 42.81 1.98
41 42 9.075678 GAATAGTAAGCCCATGTTACTACTCTA 57.924 37.037 13.65 0.00 42.81 2.43
42 43 7.785506 AGAATAGTAAGCCCATGTTACTACTCT 59.214 37.037 14.89 14.89 41.41 3.24
43 44 7.953752 AGAATAGTAAGCCCATGTTACTACTC 58.046 38.462 13.65 12.80 42.81 2.59
44 45 7.916077 AGAATAGTAAGCCCATGTTACTACT 57.084 36.000 13.65 6.14 42.81 2.57
76 77 5.399052 AGCCCAGGTTACTACTCTATGTA 57.601 43.478 0.00 0.00 0.00 2.29
77 78 4.267341 AGCCCAGGTTACTACTCTATGT 57.733 45.455 0.00 0.00 0.00 2.29
78 79 6.086785 GTAAGCCCAGGTTACTACTCTATG 57.913 45.833 8.94 0.00 41.48 2.23
87 88 7.063934 ACATAGAATAGTAAGCCCAGGTTAC 57.936 40.000 8.29 8.29 43.94 2.50
88 89 7.685849 AACATAGAATAGTAAGCCCAGGTTA 57.314 36.000 0.00 0.00 0.00 2.85
89 90 6.576778 AACATAGAATAGTAAGCCCAGGTT 57.423 37.500 0.00 0.00 0.00 3.50
90 91 6.844917 AGTAACATAGAATAGTAAGCCCAGGT 59.155 38.462 0.00 0.00 0.00 4.00
91 92 7.304497 AGTAACATAGAATAGTAAGCCCAGG 57.696 40.000 0.00 0.00 0.00 4.45
92 93 8.305317 GGTAGTAACATAGAATAGTAAGCCCAG 58.695 40.741 0.00 0.00 0.00 4.45
93 94 7.234166 GGGTAGTAACATAGAATAGTAAGCCCA 59.766 40.741 0.00 0.00 0.00 5.36
94 95 7.234166 TGGGTAGTAACATAGAATAGTAAGCCC 59.766 40.741 0.00 0.00 0.00 5.19
95 96 8.087136 GTGGGTAGTAACATAGAATAGTAAGCC 58.913 40.741 0.00 0.00 0.00 4.35
96 97 8.858094 AGTGGGTAGTAACATAGAATAGTAAGC 58.142 37.037 0.00 0.00 0.00 3.09
108 109 9.435570 AAGACTAATCATAGTGGGTAGTAACAT 57.564 33.333 0.00 0.00 42.47 2.71
109 110 8.834004 AAGACTAATCATAGTGGGTAGTAACA 57.166 34.615 0.00 0.00 42.47 2.41
111 112 9.925545 TGTAAGACTAATCATAGTGGGTAGTAA 57.074 33.333 0.00 0.00 42.47 2.24
112 113 9.347240 GTGTAAGACTAATCATAGTGGGTAGTA 57.653 37.037 0.00 0.00 42.47 1.82
113 114 7.287235 GGTGTAAGACTAATCATAGTGGGTAGT 59.713 40.741 0.00 0.00 42.47 2.73
114 115 7.255871 GGGTGTAAGACTAATCATAGTGGGTAG 60.256 44.444 0.00 0.00 42.47 3.18
115 116 6.552350 GGGTGTAAGACTAATCATAGTGGGTA 59.448 42.308 0.00 0.00 42.47 3.69
116 117 5.365895 GGGTGTAAGACTAATCATAGTGGGT 59.634 44.000 0.00 0.00 42.47 4.51
117 118 5.365605 TGGGTGTAAGACTAATCATAGTGGG 59.634 44.000 0.00 0.00 42.47 4.61
118 119 6.479972 TGGGTGTAAGACTAATCATAGTGG 57.520 41.667 0.00 0.00 42.47 4.00
128 129 9.305555 GGAGTAACATATATGGGTGTAAGACTA 57.694 37.037 16.96 0.00 0.00 2.59
129 130 7.234988 GGGAGTAACATATATGGGTGTAAGACT 59.765 40.741 16.96 7.49 0.00 3.24
130 131 7.384477 GGGAGTAACATATATGGGTGTAAGAC 58.616 42.308 16.96 3.38 0.00 3.01
131 132 6.499350 GGGGAGTAACATATATGGGTGTAAGA 59.501 42.308 16.96 0.00 0.00 2.10
132 133 6.271391 TGGGGAGTAACATATATGGGTGTAAG 59.729 42.308 16.96 0.00 0.00 2.34
133 134 6.151767 TGGGGAGTAACATATATGGGTGTAA 58.848 40.000 16.96 0.00 0.00 2.41
134 135 5.728702 TGGGGAGTAACATATATGGGTGTA 58.271 41.667 16.96 1.41 0.00 2.90
135 136 4.572978 TGGGGAGTAACATATATGGGTGT 58.427 43.478 16.96 2.30 0.00 4.16
136 137 5.779241 ATGGGGAGTAACATATATGGGTG 57.221 43.478 16.96 0.00 0.00 4.61
137 138 7.260891 TCTAATGGGGAGTAACATATATGGGT 58.739 38.462 16.96 6.99 0.00 4.51
138 139 7.623677 TCTCTAATGGGGAGTAACATATATGGG 59.376 40.741 16.96 0.00 33.06 4.00
139 140 8.609617 TCTCTAATGGGGAGTAACATATATGG 57.390 38.462 16.96 0.00 33.06 2.74
140 141 9.480861 TCTCTCTAATGGGGAGTAACATATATG 57.519 37.037 11.29 11.29 33.06 1.78
143 144 9.707957 CTATCTCTCTAATGGGGAGTAACATAT 57.292 37.037 0.00 0.00 33.06 1.78
144 145 7.616150 GCTATCTCTCTAATGGGGAGTAACATA 59.384 40.741 0.00 0.00 33.06 2.29
145 146 6.439058 GCTATCTCTCTAATGGGGAGTAACAT 59.561 42.308 0.00 0.00 33.06 2.71
146 147 5.775701 GCTATCTCTCTAATGGGGAGTAACA 59.224 44.000 0.00 0.00 33.06 2.41
147 148 5.775701 TGCTATCTCTCTAATGGGGAGTAAC 59.224 44.000 0.00 0.00 33.06 2.50
148 149 5.965486 TGCTATCTCTCTAATGGGGAGTAA 58.035 41.667 0.00 0.00 33.06 2.24
149 150 5.600669 TGCTATCTCTCTAATGGGGAGTA 57.399 43.478 0.00 0.00 33.06 2.59
150 151 4.477536 TGCTATCTCTCTAATGGGGAGT 57.522 45.455 0.00 0.00 33.06 3.85
151 152 4.590647 TGTTGCTATCTCTCTAATGGGGAG 59.409 45.833 0.00 0.00 0.00 4.30
152 153 4.556697 TGTTGCTATCTCTCTAATGGGGA 58.443 43.478 0.00 0.00 0.00 4.81
153 154 4.963318 TGTTGCTATCTCTCTAATGGGG 57.037 45.455 0.00 0.00 0.00 4.96
154 155 7.675062 ACTTATGTTGCTATCTCTCTAATGGG 58.325 38.462 0.00 0.00 0.00 4.00
181 182 9.938280 AATGAGTAGTAACATAAAGCAGTAACA 57.062 29.630 0.00 0.00 0.00 2.41
208 209 9.653287 TTTCTCATTTCGTTTATGTCTAGTCAT 57.347 29.630 7.62 7.62 0.00 3.06
209 210 9.140286 CTTTCTCATTTCGTTTATGTCTAGTCA 57.860 33.333 0.00 0.00 0.00 3.41
210 211 9.141400 ACTTTCTCATTTCGTTTATGTCTAGTC 57.859 33.333 0.00 0.00 0.00 2.59
211 212 9.490379 AACTTTCTCATTTCGTTTATGTCTAGT 57.510 29.630 0.00 0.00 0.00 2.57
238 239 8.512138 GTTTTCTTCCCTCATTTTCTTTATCGA 58.488 33.333 0.00 0.00 0.00 3.59
240 241 9.981114 TTGTTTTCTTCCCTCATTTTCTTTATC 57.019 29.630 0.00 0.00 0.00 1.75
246 247 6.366061 CCGATTTGTTTTCTTCCCTCATTTTC 59.634 38.462 0.00 0.00 0.00 2.29
257 258 4.213482 CGTCTTCCTCCGATTTGTTTTCTT 59.787 41.667 0.00 0.00 0.00 2.52
301 302 0.839946 CACCCATCCTCCGATTTCCT 59.160 55.000 0.00 0.00 0.00 3.36
365 366 4.876107 CCAGAAAATACTACTTCCGTGCAT 59.124 41.667 0.00 0.00 0.00 3.96
386 387 7.039504 ACGGAGTAGTACTTTTTATCAGTTCCA 60.040 37.037 0.00 0.00 41.94 3.53
464 491 2.158769 AGAAGTCATTGCCCGCATATGA 60.159 45.455 6.97 9.17 0.00 2.15
476 503 2.500910 CTCTCCCTGCAGAGAAGTCATT 59.499 50.000 17.39 0.00 42.44 2.57
477 504 2.109774 CTCTCCCTGCAGAGAAGTCAT 58.890 52.381 17.39 0.00 42.44 3.06
478 505 1.554836 CTCTCCCTGCAGAGAAGTCA 58.445 55.000 17.39 0.00 42.44 3.41
479 506 0.823460 CCTCTCCCTGCAGAGAAGTC 59.177 60.000 17.39 0.00 42.44 3.01
480 507 0.617249 CCCTCTCCCTGCAGAGAAGT 60.617 60.000 17.39 0.00 42.44 3.01
481 508 0.325110 TCCCTCTCCCTGCAGAGAAG 60.325 60.000 17.39 9.39 42.44 2.85
482 509 0.325110 CTCCCTCTCCCTGCAGAGAA 60.325 60.000 17.39 0.00 42.44 2.87
483 510 1.309347 CTCCCTCTCCCTGCAGAGA 59.691 63.158 17.39 6.50 42.44 3.10
484 511 1.761667 CCTCCCTCTCCCTGCAGAG 60.762 68.421 17.39 0.39 39.89 3.35
485 512 2.366167 CCTCCCTCTCCCTGCAGA 59.634 66.667 17.39 0.00 0.00 4.26
486 513 2.767496 CCCTCCCTCTCCCTGCAG 60.767 72.222 6.78 6.78 0.00 4.41
487 514 4.421554 CCCCTCCCTCTCCCTGCA 62.422 72.222 0.00 0.00 0.00 4.41
488 515 3.952799 AACCCCTCCCTCTCCCTGC 62.953 68.421 0.00 0.00 0.00 4.85
489 516 1.690985 GAACCCCTCCCTCTCCCTG 60.691 68.421 0.00 0.00 0.00 4.45
490 517 2.788589 GAACCCCTCCCTCTCCCT 59.211 66.667 0.00 0.00 0.00 4.20
491 518 2.607139 ATCGAACCCCTCCCTCTCCC 62.607 65.000 0.00 0.00 0.00 4.30
492 519 1.075151 ATCGAACCCCTCCCTCTCC 60.075 63.158 0.00 0.00 0.00 3.71
493 520 0.397254 TGATCGAACCCCTCCCTCTC 60.397 60.000 0.00 0.00 0.00 3.20
494 521 0.266152 ATGATCGAACCCCTCCCTCT 59.734 55.000 0.00 0.00 0.00 3.69
495 522 0.682292 GATGATCGAACCCCTCCCTC 59.318 60.000 0.00 0.00 0.00 4.30
496 523 0.031111 TGATGATCGAACCCCTCCCT 60.031 55.000 0.00 0.00 0.00 4.20
497 524 0.837272 TTGATGATCGAACCCCTCCC 59.163 55.000 0.00 0.00 0.00 4.30
498 525 2.104792 TCATTGATGATCGAACCCCTCC 59.895 50.000 0.00 0.00 0.00 4.30
499 526 3.475566 TCATTGATGATCGAACCCCTC 57.524 47.619 0.00 0.00 0.00 4.30
500 527 3.931907 TTCATTGATGATCGAACCCCT 57.068 42.857 0.00 0.00 36.56 4.79
501 528 4.392940 AGATTCATTGATGATCGAACCCC 58.607 43.478 0.00 0.00 36.56 4.95
502 529 4.151335 CGAGATTCATTGATGATCGAACCC 59.849 45.833 8.90 0.00 38.44 4.11
503 530 4.747108 ACGAGATTCATTGATGATCGAACC 59.253 41.667 17.45 0.00 38.44 3.62
504 531 5.386831 CGACGAGATTCATTGATGATCGAAC 60.387 44.000 17.45 11.59 38.44 3.95
505 532 4.676924 CGACGAGATTCATTGATGATCGAA 59.323 41.667 17.45 0.00 38.44 3.71
506 533 4.222114 CGACGAGATTCATTGATGATCGA 58.778 43.478 17.45 0.00 38.44 3.59
507 534 3.977579 ACGACGAGATTCATTGATGATCG 59.022 43.478 0.00 11.72 40.62 3.69
508 535 4.149571 CCACGACGAGATTCATTGATGATC 59.850 45.833 0.00 0.00 36.56 2.92
509 536 4.053983 CCACGACGAGATTCATTGATGAT 58.946 43.478 0.00 0.00 36.56 2.45
510 537 3.447742 CCACGACGAGATTCATTGATGA 58.552 45.455 0.00 0.00 34.44 2.92
607 634 4.593864 GCCTGGACCTCGCCGATC 62.594 72.222 0.00 0.00 0.00 3.69
711 744 4.358841 CCCGGCCATTGGTCACCA 62.359 66.667 8.26 0.00 0.00 4.17
730 763 1.376466 GGGCAGATCGGGCATATGT 59.624 57.895 20.33 0.00 34.52 2.29
759 792 0.404040 TGCTTCTTGGTTGGTAGGGG 59.596 55.000 0.00 0.00 0.00 4.79
774 807 1.228367 CCTGTGGCACCTTCTGCTT 60.228 57.895 16.26 0.00 46.25 3.91
784 817 1.373435 CGAGTTTACCCCTGTGGCA 59.627 57.895 0.00 0.00 37.83 4.92
845 878 0.457681 GAGAGAGAGTTCGCTGGTGC 60.458 60.000 0.00 0.00 33.29 5.01
858 891 1.037030 AGGCGGCAAGAGAGAGAGAG 61.037 60.000 13.08 0.00 0.00 3.20
867 900 2.082140 TTATAGAGGAGGCGGCAAGA 57.918 50.000 13.08 0.00 0.00 3.02
869 902 2.102588 GTCTTTATAGAGGAGGCGGCAA 59.897 50.000 13.08 0.00 0.00 4.52
870 903 1.687123 GTCTTTATAGAGGAGGCGGCA 59.313 52.381 13.08 0.00 0.00 5.69
871 904 1.336056 CGTCTTTATAGAGGAGGCGGC 60.336 57.143 0.00 0.00 38.30 6.53
873 906 1.336056 GCCGTCTTTATAGAGGAGGCG 60.336 57.143 11.88 4.95 38.30 5.52
874 907 1.964933 AGCCGTCTTTATAGAGGAGGC 59.035 52.381 16.61 16.61 42.41 4.70
875 908 2.288518 GCAGCCGTCTTTATAGAGGAGG 60.289 54.545 4.68 0.92 38.30 4.30
876 909 2.288518 GGCAGCCGTCTTTATAGAGGAG 60.289 54.545 0.00 0.00 38.30 3.69
877 910 1.687123 GGCAGCCGTCTTTATAGAGGA 59.313 52.381 0.00 0.00 38.30 3.71
878 911 1.270358 GGGCAGCCGTCTTTATAGAGG 60.270 57.143 5.00 0.00 36.32 3.69
879 912 1.603172 CGGGCAGCCGTCTTTATAGAG 60.603 57.143 5.00 0.00 0.00 2.43
922 955 0.392327 TGATCAAGGCGCGGATTTGA 60.392 50.000 8.83 14.59 35.52 2.69
962 995 3.318275 GTGAATCAGCCACGTCTATCCTA 59.682 47.826 0.00 0.00 0.00 2.94
963 996 2.101582 GTGAATCAGCCACGTCTATCCT 59.898 50.000 0.00 0.00 0.00 3.24
964 997 2.101582 AGTGAATCAGCCACGTCTATCC 59.898 50.000 0.00 0.00 39.38 2.59
1072 1105 2.573869 CTCGCCGACCATGTCACT 59.426 61.111 0.00 0.00 32.09 3.41
1089 1122 2.687566 TCTTCTTCCGCCCCTCCC 60.688 66.667 0.00 0.00 0.00 4.30
1341 1379 5.389859 AGCAAAATCATGATGTTCGGAAA 57.610 34.783 9.46 0.00 0.00 3.13
1346 1384 7.758076 TCAGATTGAAGCAAAATCATGATGTTC 59.242 33.333 9.46 8.20 36.65 3.18
1358 1453 9.467258 CTTAATTCTTTGTCAGATTGAAGCAAA 57.533 29.630 0.00 0.00 0.00 3.68
1359 1454 8.084073 CCTTAATTCTTTGTCAGATTGAAGCAA 58.916 33.333 0.00 0.00 0.00 3.91
1771 2026 4.371786 TGAGCAGTGACTTGAAAGTACTG 58.628 43.478 18.46 18.46 39.88 2.74
1818 2092 4.759782 TGTTTTCGCCCAAAGAAAAATCA 58.240 34.783 5.80 0.00 45.49 2.57
1831 2108 0.320334 CCAATGGGGTTGTTTTCGCC 60.320 55.000 0.00 0.00 36.01 5.54
1860 4220 0.463654 CGGCTCGGGATGGAAAATGA 60.464 55.000 0.00 0.00 0.00 2.57
1873 7206 2.941720 AGTAGTAACTTAGACCGGCTCG 59.058 50.000 0.00 0.00 29.00 5.03
1904 7240 1.001633 GGTCTACCGGACAAAGAGCAA 59.998 52.381 9.46 0.00 46.16 3.91
1905 7241 0.606604 GGTCTACCGGACAAAGAGCA 59.393 55.000 9.46 0.00 46.16 4.26
1939 7275 5.178438 GTGAAGACTCTGAAATGTCTGAACC 59.822 44.000 0.00 0.00 42.02 3.62
1947 7283 4.694037 TGATGCAGTGAAGACTCTGAAATG 59.306 41.667 0.00 0.00 39.18 2.32
1974 7310 7.575365 CCTTTTCTGGTTTGATACAAATTTGC 58.425 34.615 18.12 2.82 0.00 3.68
1984 7320 4.410099 TCATCAGCCTTTTCTGGTTTGAT 58.590 39.130 0.00 0.00 35.50 2.57
2030 7371 3.181526 CGAGCTGCATTCAGTTCACTTAC 60.182 47.826 9.60 0.00 46.80 2.34
2031 7372 2.995939 CGAGCTGCATTCAGTTCACTTA 59.004 45.455 9.60 0.00 46.80 2.24
2032 7373 1.802960 CGAGCTGCATTCAGTTCACTT 59.197 47.619 9.60 0.00 46.80 3.16
2258 7764 1.507140 ACATGACGGGGATGTACCAT 58.493 50.000 0.00 0.00 41.20 3.55
2718 8228 5.930837 ACCACAATTCCAAACTGAAAAGA 57.069 34.783 0.00 0.00 0.00 2.52
2757 8268 1.784358 TCATGTACCCGGTTAGGAGG 58.216 55.000 0.00 0.00 45.00 4.30
2862 8477 8.885722 GGAAACAATATGAAACAATGCAATGAT 58.114 29.630 9.20 0.00 0.00 2.45
2919 8534 5.412594 TGCAGATTTCACAGATAGAAACCAC 59.587 40.000 0.00 0.00 37.76 4.16
3086 8712 2.293677 TGCCACACGCACTCTATAAG 57.706 50.000 0.00 0.00 44.64 1.73
3165 8791 5.123027 CACAAGGCCTATTGAGAAAGAAGTC 59.877 44.000 5.16 0.00 34.20 3.01
3198 8824 4.134563 TCCCACGGAAGAAAAGAAAGAAG 58.865 43.478 0.00 0.00 0.00 2.85
3385 9035 3.751570 CAAATCGTTTGCCTCGTTTTG 57.248 42.857 11.36 11.36 39.63 2.44
3480 9143 0.591236 CAACGACACTTTGCCAACCG 60.591 55.000 0.00 0.00 0.00 4.44
3549 9212 7.016268 TGGTATCCAAGAACATAACCTAGGATC 59.984 40.741 17.98 3.76 36.20 3.36
3615 9283 7.783090 TTGTAACTAGTAGTCGACTGATAGG 57.217 40.000 28.12 15.27 39.39 2.57
3638 9306 9.696917 GAGACACAAGGACAATGATTTTAATTT 57.303 29.630 0.00 0.00 0.00 1.82
3640 9308 7.671398 AGGAGACACAAGGACAATGATTTTAAT 59.329 33.333 0.00 0.00 0.00 1.40
3641 9309 7.004086 AGGAGACACAAGGACAATGATTTTAA 58.996 34.615 0.00 0.00 0.00 1.52
3661 9329 2.182827 CCAGAACACTGATCCAGGAGA 58.817 52.381 0.00 0.00 35.51 3.71
3672 9340 3.845860 TGAGAGTTAGGACCAGAACACT 58.154 45.455 10.86 9.60 0.00 3.55
3673 9341 4.810191 ATGAGAGTTAGGACCAGAACAC 57.190 45.455 10.86 5.61 0.00 3.32
3678 9349 4.256920 CAACCAATGAGAGTTAGGACCAG 58.743 47.826 0.00 0.00 0.00 4.00
3693 9368 2.672098 TGCCCTGTAACAACAACCAAT 58.328 42.857 0.00 0.00 0.00 3.16
3745 9429 9.944663 GTTATGAACAGAAGTACAATTGTTTGA 57.055 29.630 17.78 0.00 36.64 2.69
3818 9504 7.218228 AGCAATGTTTGATTACAGTGATGAA 57.782 32.000 8.20 0.00 44.46 2.57
4124 9847 7.325694 ACAAATGTTCCATCCATTCATTCTTC 58.674 34.615 0.00 0.00 31.49 2.87
4192 9919 3.305199 GCGTTACTGACTCACTGTTACCT 60.305 47.826 0.00 0.00 30.25 3.08
4210 9937 0.612174 TCTCTAGTGGAGCCTGCGTT 60.612 55.000 0.00 0.00 41.60 4.84
4231 9958 7.147828 CCAGAAACAGAGATAGTATGTTCTCCA 60.148 40.741 0.00 0.00 39.36 3.86
4233 9960 8.001881 TCCAGAAACAGAGATAGTATGTTCTC 57.998 38.462 0.00 0.00 36.18 2.87
4257 9984 9.807649 AATTGAACTGCCAAAATGTCTAATATC 57.192 29.630 0.00 0.00 0.00 1.63
4264 9991 6.258507 AGTTTCAATTGAACTGCCAAAATGTC 59.741 34.615 20.35 0.00 33.13 3.06
4296 10023 6.015265 ACCCTCTCTTCCTAAATATAAGACGC 60.015 42.308 0.00 0.00 0.00 5.19
4314 10041 4.099727 GTCCCTTGAGTAATACACCCTCTC 59.900 50.000 0.00 0.00 0.00 3.20
4318 10045 3.518303 AGTGTCCCTTGAGTAATACACCC 59.482 47.826 0.00 0.00 38.34 4.61
4336 10063 9.349713 TGGTAGAAATTACAGAAAATCAAGTGT 57.650 29.630 0.00 0.00 0.00 3.55
4365 10092 5.192327 AGGCATATTTTACATGCTGAAGC 57.808 39.130 7.20 0.00 46.44 3.86
4425 10152 9.643693 ACTAATCACAACCAAAATCAATCAATC 57.356 29.630 0.00 0.00 0.00 2.67
4517 10245 6.476243 TCTTTACGCCTAACTGATTGTTTC 57.524 37.500 0.00 0.00 39.89 2.78
4541 10269 7.895594 GTCCGTCAGAGAGAAATCTCGGATAA 61.896 46.154 10.52 0.00 43.46 1.75
4565 10293 3.061006 CGTGTACGTTTAGCAAAGTTCGT 60.061 43.478 0.00 0.00 35.73 3.85
4568 10296 2.867975 AGCGTGTACGTTTAGCAAAGTT 59.132 40.909 6.27 0.00 42.22 2.66
4569 10297 2.220133 CAGCGTGTACGTTTAGCAAAGT 59.780 45.455 6.27 0.00 42.22 2.66
4578 11653 4.300803 TCTGTAAAATCAGCGTGTACGTT 58.699 39.130 6.27 0.00 42.22 3.99
4585 11660 5.694910 CCGGTATAATCTGTAAAATCAGCGT 59.305 40.000 0.00 0.00 35.63 5.07
4603 11678 2.446036 GTCAGCCCTCCCCGGTAT 60.446 66.667 0.00 0.00 0.00 2.73
4610 11685 1.067821 CTAATCTCACGTCAGCCCTCC 59.932 57.143 0.00 0.00 0.00 4.30
4611 11686 2.025155 TCTAATCTCACGTCAGCCCTC 58.975 52.381 0.00 0.00 0.00 4.30
4612 11687 2.145397 TCTAATCTCACGTCAGCCCT 57.855 50.000 0.00 0.00 0.00 5.19
4641 11716 4.104383 AGGAGCAGAAGAAATTGGTCAA 57.896 40.909 6.10 0.00 42.11 3.18
4651 11726 0.832135 ACCGGACAAGGAGCAGAAGA 60.832 55.000 9.46 0.00 34.73 2.87
4666 11741 4.992319 TGATAAGTAACAGTGTCAAACCGG 59.008 41.667 0.00 0.00 0.00 5.28
4669 11744 9.233232 CCTTTTTGATAAGTAACAGTGTCAAAC 57.767 33.333 0.00 0.00 35.89 2.93
4722 11797 2.188817 AGGACAGGGTATCTGACAACC 58.811 52.381 0.00 3.03 46.18 3.77
4729 11804 2.247635 TGGCTCTAAGGACAGGGTATCT 59.752 50.000 0.00 0.00 0.00 1.98
4746 11821 5.104610 AGTTCAGATTCATCAGTATGTGGCT 60.105 40.000 0.00 0.00 37.40 4.75
4747 11822 5.007430 CAGTTCAGATTCATCAGTATGTGGC 59.993 44.000 0.00 0.00 37.40 5.01
4748 11823 5.526479 CCAGTTCAGATTCATCAGTATGTGG 59.474 44.000 0.00 0.00 37.40 4.17
4749 11824 6.343703 TCCAGTTCAGATTCATCAGTATGTG 58.656 40.000 0.00 0.00 37.40 3.21
4750 11825 6.382282 TCTCCAGTTCAGATTCATCAGTATGT 59.618 38.462 0.00 0.00 37.40 2.29
4751 11826 6.814043 TCTCCAGTTCAGATTCATCAGTATG 58.186 40.000 0.00 0.00 37.54 2.39
4752 11827 7.615039 ATCTCCAGTTCAGATTCATCAGTAT 57.385 36.000 0.00 0.00 0.00 2.12
4753 11828 7.429374 AATCTCCAGTTCAGATTCATCAGTA 57.571 36.000 0.00 0.00 36.04 2.74
4754 11829 5.954153 ATCTCCAGTTCAGATTCATCAGT 57.046 39.130 0.00 0.00 0.00 3.41
4765 11840 8.082672 TGATAATCTTCTGAATCTCCAGTTCA 57.917 34.615 0.00 0.00 35.71 3.18
4766 11841 8.954950 TTGATAATCTTCTGAATCTCCAGTTC 57.045 34.615 0.00 0.00 35.71 3.01
4767 11842 9.917887 AATTGATAATCTTCTGAATCTCCAGTT 57.082 29.630 0.00 0.00 35.71 3.16
4768 11843 9.917887 AAATTGATAATCTTCTGAATCTCCAGT 57.082 29.630 0.00 0.00 35.71 4.00
4770 11845 8.627403 GCAAATTGATAATCTTCTGAATCTCCA 58.373 33.333 0.00 0.00 0.00 3.86
4771 11846 8.627403 TGCAAATTGATAATCTTCTGAATCTCC 58.373 33.333 0.00 0.00 0.00 3.71
4773 11848 9.798994 GTTGCAAATTGATAATCTTCTGAATCT 57.201 29.630 0.00 0.00 0.00 2.40
4774 11849 9.577110 TGTTGCAAATTGATAATCTTCTGAATC 57.423 29.630 0.00 0.00 0.00 2.52
4775 11850 9.362539 GTGTTGCAAATTGATAATCTTCTGAAT 57.637 29.630 0.00 0.00 0.00 2.57
4776 11851 8.358895 TGTGTTGCAAATTGATAATCTTCTGAA 58.641 29.630 0.00 0.00 0.00 3.02
4777 11852 7.884257 TGTGTTGCAAATTGATAATCTTCTGA 58.116 30.769 0.00 0.00 0.00 3.27
4778 11853 8.697846 ATGTGTTGCAAATTGATAATCTTCTG 57.302 30.769 0.00 0.00 0.00 3.02
4779 11854 8.525316 TGATGTGTTGCAAATTGATAATCTTCT 58.475 29.630 0.00 0.00 0.00 2.85
4780 11855 8.692110 TGATGTGTTGCAAATTGATAATCTTC 57.308 30.769 0.00 0.00 0.00 2.87
4791 11866 9.037737 GCAGATTATTTATGATGTGTTGCAAAT 57.962 29.630 0.00 0.00 0.00 2.32
4792 11867 7.492020 GGCAGATTATTTATGATGTGTTGCAAA 59.508 33.333 0.00 0.00 0.00 3.68
4793 11868 6.979817 GGCAGATTATTTATGATGTGTTGCAA 59.020 34.615 0.00 0.00 0.00 4.08
4794 11869 6.096564 TGGCAGATTATTTATGATGTGTTGCA 59.903 34.615 0.00 0.00 0.00 4.08
4795 11870 6.506147 TGGCAGATTATTTATGATGTGTTGC 58.494 36.000 0.00 0.00 0.00 4.17
4796 11871 7.709947 ACTGGCAGATTATTTATGATGTGTTG 58.290 34.615 23.66 0.00 0.00 3.33
4797 11872 7.886629 ACTGGCAGATTATTTATGATGTGTT 57.113 32.000 23.66 0.00 0.00 3.32
4798 11873 7.682741 GCAACTGGCAGATTATTTATGATGTGT 60.683 37.037 23.66 0.00 43.97 3.72
4799 11874 6.639686 GCAACTGGCAGATTATTTATGATGTG 59.360 38.462 23.66 0.00 43.97 3.21
4800 11875 6.742109 GCAACTGGCAGATTATTTATGATGT 58.258 36.000 23.66 0.00 43.97 3.06
4816 11891 2.813754 TCACTCACTAAATGCAACTGGC 59.186 45.455 0.00 0.00 45.13 4.85
4817 11892 4.067896 ACTCACTCACTAAATGCAACTGG 58.932 43.478 0.00 0.00 0.00 4.00
4818 11893 6.974932 ATACTCACTCACTAAATGCAACTG 57.025 37.500 0.00 0.00 0.00 3.16
4819 11894 9.973450 CTATATACTCACTCACTAAATGCAACT 57.027 33.333 0.00 0.00 0.00 3.16
4820 11895 9.197694 CCTATATACTCACTCACTAAATGCAAC 57.802 37.037 0.00 0.00 0.00 4.17
4821 11896 8.924303 ACCTATATACTCACTCACTAAATGCAA 58.076 33.333 0.00 0.00 0.00 4.08
4822 11897 8.360390 CACCTATATACTCACTCACTAAATGCA 58.640 37.037 0.00 0.00 0.00 3.96
4823 11898 8.361139 ACACCTATATACTCACTCACTAAATGC 58.639 37.037 0.00 0.00 0.00 3.56
4824 11899 9.900710 GACACCTATATACTCACTCACTAAATG 57.099 37.037 0.00 0.00 0.00 2.32
4825 11900 9.642343 TGACACCTATATACTCACTCACTAAAT 57.358 33.333 0.00 0.00 0.00 1.40
4826 11901 8.900781 GTGACACCTATATACTCACTCACTAAA 58.099 37.037 0.00 0.00 0.00 1.85
4827 11902 8.050930 TGTGACACCTATATACTCACTCACTAA 58.949 37.037 2.45 0.00 33.75 2.24
4828 11903 7.571025 TGTGACACCTATATACTCACTCACTA 58.429 38.462 2.45 0.00 33.75 2.74
4829 11904 6.424032 TGTGACACCTATATACTCACTCACT 58.576 40.000 2.45 0.00 33.75 3.41
4830 11905 6.694877 TGTGACACCTATATACTCACTCAC 57.305 41.667 2.45 0.00 33.75 3.51
4831 11906 7.712204 TTTGTGACACCTATATACTCACTCA 57.288 36.000 2.45 0.00 33.75 3.41
4844 11919 9.612066 ATGAAAATGTTTTAATTTGTGACACCT 57.388 25.926 2.45 0.00 30.21 4.00
4859 11934 9.598517 ACTAACACATTCACAATGAAAATGTTT 57.401 25.926 20.08 15.00 41.57 2.83
4860 11935 9.033481 CACTAACACATTCACAATGAAAATGTT 57.967 29.630 19.36 19.36 44.04 2.71
4861 11936 8.412456 TCACTAACACATTCACAATGAAAATGT 58.588 29.630 10.51 10.51 42.70 2.71
4862 11937 8.800231 TCACTAACACATTCACAATGAAAATG 57.200 30.769 3.24 9.54 40.12 2.32
4863 11938 8.849168 TCTCACTAACACATTCACAATGAAAAT 58.151 29.630 3.24 0.00 40.12 1.82
4864 11939 8.219546 TCTCACTAACACATTCACAATGAAAA 57.780 30.769 3.24 0.00 40.12 2.29
4865 11940 7.498900 ACTCTCACTAACACATTCACAATGAAA 59.501 33.333 3.24 0.00 40.12 2.69
4866 11941 6.992123 ACTCTCACTAACACATTCACAATGAA 59.008 34.615 3.24 0.00 41.46 2.57
4867 11942 6.424812 CACTCTCACTAACACATTCACAATGA 59.575 38.462 3.24 0.00 41.46 2.57
4868 11943 6.347969 CCACTCTCACTAACACATTCACAATG 60.348 42.308 0.00 0.00 44.48 2.82
4869 11944 5.702670 CCACTCTCACTAACACATTCACAAT 59.297 40.000 0.00 0.00 0.00 2.71
4870 11945 5.056480 CCACTCTCACTAACACATTCACAA 58.944 41.667 0.00 0.00 0.00 3.33
4871 11946 4.343814 TCCACTCTCACTAACACATTCACA 59.656 41.667 0.00 0.00 0.00 3.58
4872 11947 4.883083 TCCACTCTCACTAACACATTCAC 58.117 43.478 0.00 0.00 0.00 3.18
4873 11948 5.012046 ACATCCACTCTCACTAACACATTCA 59.988 40.000 0.00 0.00 0.00 2.57
4874 11949 5.349817 CACATCCACTCTCACTAACACATTC 59.650 44.000 0.00 0.00 0.00 2.67
4875 11950 5.012046 TCACATCCACTCTCACTAACACATT 59.988 40.000 0.00 0.00 0.00 2.71
4876 11951 4.528206 TCACATCCACTCTCACTAACACAT 59.472 41.667 0.00 0.00 0.00 3.21
4877 11952 3.895041 TCACATCCACTCTCACTAACACA 59.105 43.478 0.00 0.00 0.00 3.72
4878 11953 4.238514 GTCACATCCACTCTCACTAACAC 58.761 47.826 0.00 0.00 0.00 3.32
4879 11954 3.258372 GGTCACATCCACTCTCACTAACA 59.742 47.826 0.00 0.00 0.00 2.41
4880 11955 3.368531 GGGTCACATCCACTCTCACTAAC 60.369 52.174 0.00 0.00 0.00 2.34
4881 11956 2.832129 GGGTCACATCCACTCTCACTAA 59.168 50.000 0.00 0.00 0.00 2.24
4882 11957 2.225267 TGGGTCACATCCACTCTCACTA 60.225 50.000 0.00 0.00 0.00 2.74
4883 11958 1.270907 GGGTCACATCCACTCTCACT 58.729 55.000 0.00 0.00 0.00 3.41
4884 11959 0.976641 TGGGTCACATCCACTCTCAC 59.023 55.000 0.00 0.00 0.00 3.51
4885 11960 1.956869 ATGGGTCACATCCACTCTCA 58.043 50.000 0.00 0.00 37.08 3.27
4886 11961 2.366916 CCTATGGGTCACATCCACTCTC 59.633 54.545 0.00 0.00 41.03 3.20
4887 11962 2.293184 ACCTATGGGTCACATCCACTCT 60.293 50.000 0.00 0.00 43.38 3.24
4888 11963 2.119495 ACCTATGGGTCACATCCACTC 58.881 52.381 0.00 0.00 43.38 3.51
4889 11964 2.270434 ACCTATGGGTCACATCCACT 57.730 50.000 0.00 0.00 43.38 4.00
4900 11975 0.982852 TGGCTGAGTGGACCTATGGG 60.983 60.000 0.00 0.00 38.88 4.00
4901 11976 0.179000 GTGGCTGAGTGGACCTATGG 59.821 60.000 0.00 0.00 0.00 2.74
4902 11977 0.179000 GGTGGCTGAGTGGACCTATG 59.821 60.000 0.00 0.00 0.00 2.23
4903 11978 0.983378 GGGTGGCTGAGTGGACCTAT 60.983 60.000 0.00 0.00 0.00 2.57
4904 11979 1.612442 GGGTGGCTGAGTGGACCTA 60.612 63.158 0.00 0.00 0.00 3.08
4905 11980 2.930562 GGGTGGCTGAGTGGACCT 60.931 66.667 0.00 0.00 0.00 3.85
4906 11981 2.754664 CTTGGGTGGCTGAGTGGACC 62.755 65.000 0.00 0.00 0.00 4.46
4907 11982 1.302832 CTTGGGTGGCTGAGTGGAC 60.303 63.158 0.00 0.00 0.00 4.02
4908 11983 1.059584 TTCTTGGGTGGCTGAGTGGA 61.060 55.000 0.00 0.00 0.00 4.02
4909 11984 0.607489 CTTCTTGGGTGGCTGAGTGG 60.607 60.000 0.00 0.00 0.00 4.00
4910 11985 0.397941 TCTTCTTGGGTGGCTGAGTG 59.602 55.000 0.00 0.00 0.00 3.51
4911 11986 0.689623 CTCTTCTTGGGTGGCTGAGT 59.310 55.000 0.00 0.00 0.00 3.41
4912 11987 0.035630 CCTCTTCTTGGGTGGCTGAG 60.036 60.000 0.00 0.00 0.00 3.35
4913 11988 0.473694 TCCTCTTCTTGGGTGGCTGA 60.474 55.000 0.00 0.00 0.00 4.26
4914 11989 0.035630 CTCCTCTTCTTGGGTGGCTG 60.036 60.000 0.00 0.00 0.00 4.85
4915 11990 0.178891 TCTCCTCTTCTTGGGTGGCT 60.179 55.000 0.00 0.00 0.00 4.75
4916 11991 0.693049 TTCTCCTCTTCTTGGGTGGC 59.307 55.000 0.00 0.00 0.00 5.01
4917 11992 3.265479 AGATTTCTCCTCTTCTTGGGTGG 59.735 47.826 0.00 0.00 0.00 4.61
4918 11993 4.260170 CAGATTTCTCCTCTTCTTGGGTG 58.740 47.826 0.00 0.00 0.00 4.61
4919 11994 3.265479 CCAGATTTCTCCTCTTCTTGGGT 59.735 47.826 0.00 0.00 0.00 4.51
4920 11995 3.521126 TCCAGATTTCTCCTCTTCTTGGG 59.479 47.826 0.00 0.00 0.00 4.12
4921 11996 4.019860 TGTCCAGATTTCTCCTCTTCTTGG 60.020 45.833 0.00 0.00 0.00 3.61
4922 11997 4.934602 GTGTCCAGATTTCTCCTCTTCTTG 59.065 45.833 0.00 0.00 0.00 3.02
4923 11998 4.594920 TGTGTCCAGATTTCTCCTCTTCTT 59.405 41.667 0.00 0.00 0.00 2.52
4924 11999 4.163427 TGTGTCCAGATTTCTCCTCTTCT 58.837 43.478 0.00 0.00 0.00 2.85
4925 12000 4.543590 TGTGTCCAGATTTCTCCTCTTC 57.456 45.455 0.00 0.00 0.00 2.87
4926 12001 4.982241 TTGTGTCCAGATTTCTCCTCTT 57.018 40.909 0.00 0.00 0.00 2.85
4927 12002 5.130145 CCTATTGTGTCCAGATTTCTCCTCT 59.870 44.000 0.00 0.00 0.00 3.69
4928 12003 5.129485 TCCTATTGTGTCCAGATTTCTCCTC 59.871 44.000 0.00 0.00 0.00 3.71
4929 12004 5.032846 TCCTATTGTGTCCAGATTTCTCCT 58.967 41.667 0.00 0.00 0.00 3.69
4930 12005 5.119694 GTCCTATTGTGTCCAGATTTCTCC 58.880 45.833 0.00 0.00 0.00 3.71
4931 12006 5.734720 TGTCCTATTGTGTCCAGATTTCTC 58.265 41.667 0.00 0.00 0.00 2.87
4932 12007 5.762179 TGTCCTATTGTGTCCAGATTTCT 57.238 39.130 0.00 0.00 0.00 2.52
4933 12008 5.355350 CCTTGTCCTATTGTGTCCAGATTTC 59.645 44.000 0.00 0.00 0.00 2.17
4934 12009 5.256474 CCTTGTCCTATTGTGTCCAGATTT 58.744 41.667 0.00 0.00 0.00 2.17
4935 12010 4.848357 CCTTGTCCTATTGTGTCCAGATT 58.152 43.478 0.00 0.00 0.00 2.40
4936 12011 3.370953 GCCTTGTCCTATTGTGTCCAGAT 60.371 47.826 0.00 0.00 0.00 2.90
4937 12012 2.027192 GCCTTGTCCTATTGTGTCCAGA 60.027 50.000 0.00 0.00 0.00 3.86
4938 12013 2.026822 AGCCTTGTCCTATTGTGTCCAG 60.027 50.000 0.00 0.00 0.00 3.86
4939 12014 1.985159 AGCCTTGTCCTATTGTGTCCA 59.015 47.619 0.00 0.00 0.00 4.02
4940 12015 2.789409 AGCCTTGTCCTATTGTGTCC 57.211 50.000 0.00 0.00 0.00 4.02
4941 12016 3.437049 GTGAAGCCTTGTCCTATTGTGTC 59.563 47.826 0.00 0.00 0.00 3.67
4942 12017 3.181445 TGTGAAGCCTTGTCCTATTGTGT 60.181 43.478 0.00 0.00 0.00 3.72
4943 12018 3.411446 TGTGAAGCCTTGTCCTATTGTG 58.589 45.455 0.00 0.00 0.00 3.33
4944 12019 3.788227 TGTGAAGCCTTGTCCTATTGT 57.212 42.857 0.00 0.00 0.00 2.71
4945 12020 5.010012 ACTTTTGTGAAGCCTTGTCCTATTG 59.990 40.000 0.00 0.00 0.00 1.90
4946 12021 5.140454 ACTTTTGTGAAGCCTTGTCCTATT 58.860 37.500 0.00 0.00 0.00 1.73
4947 12022 4.729868 ACTTTTGTGAAGCCTTGTCCTAT 58.270 39.130 0.00 0.00 0.00 2.57
4948 12023 4.164843 ACTTTTGTGAAGCCTTGTCCTA 57.835 40.909 0.00 0.00 0.00 2.94
4949 12024 3.018423 ACTTTTGTGAAGCCTTGTCCT 57.982 42.857 0.00 0.00 0.00 3.85
4962 12037 5.448632 CCTCGTTGCTTTTAGACACTTTTGT 60.449 40.000 0.00 0.00 39.32 2.83
4963 12038 4.970003 CCTCGTTGCTTTTAGACACTTTTG 59.030 41.667 0.00 0.00 0.00 2.44
4964 12039 4.638865 ACCTCGTTGCTTTTAGACACTTTT 59.361 37.500 0.00 0.00 0.00 2.27
4965 12040 4.196971 ACCTCGTTGCTTTTAGACACTTT 58.803 39.130 0.00 0.00 0.00 2.66
4966 12041 3.805207 ACCTCGTTGCTTTTAGACACTT 58.195 40.909 0.00 0.00 0.00 3.16
4967 12042 3.470645 ACCTCGTTGCTTTTAGACACT 57.529 42.857 0.00 0.00 0.00 3.55
4968 12043 3.362693 CGAACCTCGTTGCTTTTAGACAC 60.363 47.826 0.00 0.00 34.72 3.67
4969 12044 2.798283 CGAACCTCGTTGCTTTTAGACA 59.202 45.455 0.00 0.00 34.72 3.41
4970 12045 3.435262 CGAACCTCGTTGCTTTTAGAC 57.565 47.619 0.00 0.00 34.72 2.59
4982 12057 2.092211 GCATTTACTGTCACGAACCTCG 59.908 50.000 0.00 0.00 46.93 4.63
4983 12058 3.064207 TGCATTTACTGTCACGAACCTC 58.936 45.455 0.00 0.00 0.00 3.85
4984 12059 3.120321 TGCATTTACTGTCACGAACCT 57.880 42.857 0.00 0.00 0.00 3.50
4985 12060 3.188460 ACATGCATTTACTGTCACGAACC 59.812 43.478 0.00 0.00 0.00 3.62
4986 12061 4.084066 TGACATGCATTTACTGTCACGAAC 60.084 41.667 14.51 0.00 43.10 3.95
4987 12062 4.061596 TGACATGCATTTACTGTCACGAA 58.938 39.130 14.51 0.00 43.10 3.85
4988 12063 3.658709 TGACATGCATTTACTGTCACGA 58.341 40.909 14.51 0.00 43.10 4.35
4989 12064 4.083855 AGTTGACATGCATTTACTGTCACG 60.084 41.667 17.40 0.00 46.44 4.35
4990 12065 5.362556 AGTTGACATGCATTTACTGTCAC 57.637 39.130 17.40 13.03 46.44 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.