Multiple sequence alignment - TraesCS5A01G141600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G141600 chr5A 100.000 7713 0 0 1 7713 314142511 314150223 0.000000e+00 14244.0
1 TraesCS5A01G141600 chr5A 74.742 194 39 4 2634 2826 527902978 527903162 2.310000e-10 78.7
2 TraesCS5A01G141600 chr5A 93.878 49 1 2 3027 3074 646197183 646197136 1.070000e-08 73.1
3 TraesCS5A01G141600 chr5A 75.735 136 28 3 528 663 648850851 648850981 6.460000e-06 63.9
4 TraesCS5A01G141600 chr5D 96.616 1566 45 4 3304 4868 239583541 239581983 0.000000e+00 2591.0
5 TraesCS5A01G141600 chr5D 91.791 1681 80 25 1 1644 239587024 239585365 0.000000e+00 2287.0
6 TraesCS5A01G141600 chr5D 90.815 1742 75 37 1645 3303 239585327 239583588 0.000000e+00 2252.0
7 TraesCS5A01G141600 chr5D 91.370 1599 68 28 6142 7713 239582000 239580445 0.000000e+00 2124.0
8 TraesCS5A01G141600 chr5D 77.812 320 59 6 302 617 348499652 348499963 3.670000e-43 187.0
9 TraesCS5A01G141600 chr5D 83.929 112 11 4 3132 3242 564761966 564762071 4.930000e-17 100.0
10 TraesCS5A01G141600 chr5D 95.833 48 2 0 3025 3072 519637230 519637183 2.310000e-10 78.7
11 TraesCS5A01G141600 chr5D 92.157 51 4 0 6900 6950 441890888 441890838 1.070000e-08 73.1
12 TraesCS5A01G141600 chr5D 100.000 39 0 0 134 172 497298106 497298144 1.070000e-08 73.1
13 TraesCS5A01G141600 chr5D 95.238 42 2 0 134 175 408663567 408663526 5.000000e-07 67.6
14 TraesCS5A01G141600 chr5B 94.106 1561 56 4 3304 4862 263937114 263938640 0.000000e+00 2340.0
15 TraesCS5A01G141600 chr5B 89.178 1765 84 41 1642 3303 263935307 263937067 0.000000e+00 2102.0
16 TraesCS5A01G141600 chr5B 94.183 894 28 10 774 1644 263934380 263935272 0.000000e+00 1341.0
17 TraesCS5A01G141600 chr5B 94.040 604 23 6 6139 6730 263938626 263939228 0.000000e+00 904.0
18 TraesCS5A01G141600 chr5B 84.988 806 60 16 1 794 263780742 263781498 0.000000e+00 761.0
19 TraesCS5A01G141600 chr5B 88.667 150 15 2 3093 3241 645807618 645807470 1.710000e-41 182.0
20 TraesCS5A01G141600 chr5B 88.000 150 17 1 3093 3241 175850769 175850918 7.950000e-40 176.0
21 TraesCS5A01G141600 chr5B 87.013 154 17 3 3090 3241 645821305 645821153 3.700000e-38 171.0
22 TraesCS5A01G141600 chr5B 100.000 39 0 0 134 172 62976000 62976038 1.070000e-08 73.1
23 TraesCS5A01G141600 chr1B 89.232 1263 125 9 4862 6120 504240388 504239133 0.000000e+00 1568.0
24 TraesCS5A01G141600 chr1B 77.739 566 72 26 7180 7703 14261195 14261748 1.630000e-76 298.0
25 TraesCS5A01G141600 chr1B 83.544 237 39 0 1652 1888 684220755 684220991 1.010000e-53 222.0
26 TraesCS5A01G141600 chr1B 77.008 361 64 15 305 659 431405207 431405554 1.020000e-43 189.0
27 TraesCS5A01G141600 chr1B 88.889 153 15 2 3091 3241 190528506 190528658 3.670000e-43 187.0
28 TraesCS5A01G141600 chr1B 87.248 149 18 1 3093 3240 314145135 314145283 1.330000e-37 169.0
29 TraesCS5A01G141600 chr3B 88.978 1252 126 8 4892 6134 751783673 751784921 0.000000e+00 1537.0
30 TraesCS5A01G141600 chr3B 88.889 54 4 2 121 172 362255671 362255724 1.800000e-06 65.8
31 TraesCS5A01G141600 chr7A 88.500 1287 122 10 4868 6134 209408537 209407257 0.000000e+00 1533.0
32 TraesCS5A01G141600 chr7A 78.929 280 48 8 301 576 280020157 280020429 6.150000e-41 180.0
33 TraesCS5A01G141600 chr7A 100.000 33 0 0 6901 6933 510900442 510900410 2.320000e-05 62.1
34 TraesCS5A01G141600 chr2B 87.816 1264 130 16 4857 6115 2487741 2488985 0.000000e+00 1459.0
35 TraesCS5A01G141600 chr2B 88.269 520 55 3 4864 5381 679703824 679704339 1.100000e-172 617.0
36 TraesCS5A01G141600 chr2B 81.517 211 33 5 301 506 710279352 710279143 1.330000e-37 169.0
37 TraesCS5A01G141600 chr2B 95.833 48 2 0 134 181 190922276 190922229 2.310000e-10 78.7
38 TraesCS5A01G141600 chr2B 95.652 46 2 0 127 172 149028754 149028709 2.990000e-09 75.0
39 TraesCS5A01G141600 chr6D 88.654 1181 99 12 4865 6041 113859811 113860960 0.000000e+00 1406.0
40 TraesCS5A01G141600 chr6D 78.920 389 66 11 301 685 337846875 337847251 4.620000e-62 250.0
41 TraesCS5A01G141600 chr6D 77.605 451 60 18 7289 7703 373390969 373390524 1.290000e-57 235.0
42 TraesCS5A01G141600 chr6D 75.287 348 64 15 321 663 39070782 39070452 6.240000e-31 147.0
43 TraesCS5A01G141600 chr6D 80.303 198 26 10 2629 2824 464967313 464967127 3.750000e-28 137.0
44 TraesCS5A01G141600 chr6D 80.537 149 25 3 320 464 122689471 122689323 2.280000e-20 111.0
45 TraesCS5A01G141600 chr6D 78.882 161 27 3 415 575 457330058 457329905 1.370000e-17 102.0
46 TraesCS5A01G141600 chr6A 86.465 1256 135 16 4862 6113 2219774 2220998 0.000000e+00 1345.0
47 TraesCS5A01G141600 chr3D 85.111 1303 171 18 4857 6142 461316156 461317452 0.000000e+00 1310.0
48 TraesCS5A01G141600 chr3D 86.869 198 21 1 1696 1888 604254961 604255158 4.690000e-52 217.0
49 TraesCS5A01G141600 chr3D 79.167 192 34 4 2635 2825 608073419 608073605 2.260000e-25 128.0
50 TraesCS5A01G141600 chr3D 94.118 68 4 0 6901 6968 275632080 275632013 3.810000e-18 104.0
51 TraesCS5A01G141600 chr3D 97.436 39 1 0 134 172 45624045 45624083 5.000000e-07 67.6
52 TraesCS5A01G141600 chr1D 89.548 995 95 6 4862 5850 464350014 464349023 0.000000e+00 1253.0
53 TraesCS5A01G141600 chr1D 89.626 935 90 6 5212 6141 306666964 306667896 0.000000e+00 1182.0
54 TraesCS5A01G141600 chr1D 76.310 477 66 22 7233 7672 447223420 447223886 2.180000e-50 211.0
55 TraesCS5A01G141600 chr1D 79.116 249 39 8 415 663 365430221 365430456 8.010000e-35 159.0
56 TraesCS5A01G141600 chr1D 76.052 309 57 8 302 600 411058096 411058397 2.240000e-30 145.0
57 TraesCS5A01G141600 chr1D 100.000 39 0 0 134 172 253515264 253515226 1.070000e-08 73.1
58 TraesCS5A01G141600 chr1D 100.000 38 0 0 2646 2683 378722260 378722223 3.860000e-08 71.3
59 TraesCS5A01G141600 chr1D 97.143 35 1 0 136 170 123114619 123114653 8.360000e-05 60.2
60 TraesCS5A01G141600 chr2A 89.162 489 44 6 4862 5345 686034065 686034549 1.110000e-167 601.0
61 TraesCS5A01G141600 chr2A 77.121 389 70 10 295 677 693154008 693154383 2.820000e-49 207.0
62 TraesCS5A01G141600 chr2A 79.508 244 24 14 2998 3239 515296998 515296779 4.820000e-32 150.0
63 TraesCS5A01G141600 chr2A 97.059 34 1 0 6900 6933 726773588 726773621 3.010000e-04 58.4
64 TraesCS5A01G141600 chr7B 76.687 489 62 25 7234 7685 658318755 658318282 2.800000e-54 224.0
65 TraesCS5A01G141600 chr7B 89.333 150 15 1 3093 3241 588220638 588220787 3.670000e-43 187.0
66 TraesCS5A01G141600 chr1A 83.333 234 39 0 1655 1888 589674605 589674372 4.690000e-52 217.0
67 TraesCS5A01G141600 chr1A 75.196 383 76 10 300 677 258146857 258146489 6.190000e-36 163.0
68 TraesCS5A01G141600 chr1A 73.786 412 88 15 305 711 286011405 286011009 2.240000e-30 145.0
69 TraesCS5A01G141600 chr1A 84.496 129 17 3 376 503 285955856 285955982 2.920000e-24 124.0
70 TraesCS5A01G141600 chr1A 100.000 38 0 0 2646 2683 578209373 578209410 3.860000e-08 71.3
71 TraesCS5A01G141600 chr4D 77.135 363 67 9 300 659 58273921 58274270 6.110000e-46 196.0
72 TraesCS5A01G141600 chr4D 78.662 314 43 19 301 601 58157458 58157760 3.670000e-43 187.0
73 TraesCS5A01G141600 chr4D 89.333 150 14 2 3093 3241 329540569 329540421 3.670000e-43 187.0
74 TraesCS5A01G141600 chr4D 77.174 276 48 10 305 576 129756115 129755851 6.240000e-31 147.0
75 TraesCS5A01G141600 chr4D 78.922 204 31 11 7243 7444 306790803 306790610 2.260000e-25 128.0
76 TraesCS5A01G141600 chr4D 100.000 39 0 0 134 172 249371200 249371238 1.070000e-08 73.1
77 TraesCS5A01G141600 chr4D 100.000 37 0 0 2647 2683 471966299 471966263 1.390000e-07 69.4
78 TraesCS5A01G141600 chr2D 76.738 374 71 10 301 670 617956708 617956347 2.200000e-45 195.0
79 TraesCS5A01G141600 chr2D 77.152 302 55 8 369 670 178698265 178698552 6.190000e-36 163.0
80 TraesCS5A01G141600 chr2D 74.495 396 84 9 295 685 552530090 552530473 1.040000e-33 156.0
81 TraesCS5A01G141600 chr2D 100.000 39 0 0 134 172 52623527 52623565 1.070000e-08 73.1
82 TraesCS5A01G141600 chr2D 94.872 39 2 0 134 172 439396427 439396465 2.320000e-05 62.1
83 TraesCS5A01G141600 chr6B 88.000 150 17 1 3093 3241 150881051 150880902 7.950000e-40 176.0
84 TraesCS5A01G141600 chr6B 100.000 39 0 0 134 172 542239712 542239674 1.070000e-08 73.1
85 TraesCS5A01G141600 chr7D 78.648 281 46 8 301 576 582062401 582062672 2.860000e-39 174.0
86 TraesCS5A01G141600 chr7D 78.740 254 45 6 2992 3243 403742394 403742148 2.230000e-35 161.0
87 TraesCS5A01G141600 chr4B 87.013 154 18 2 3090 3241 94544803 94544650 1.030000e-38 172.0
88 TraesCS5A01G141600 chr4B 87.333 150 12 3 3093 3241 199782734 199782877 1.720000e-36 165.0
89 TraesCS5A01G141600 chr4B 85.621 153 20 2 3091 3241 186642876 186643028 8.010000e-35 159.0
90 TraesCS5A01G141600 chr4B 86.667 120 16 0 370 489 672944068 672944187 4.860000e-27 134.0
91 TraesCS5A01G141600 chr4B 78.894 199 37 3 310 503 22950576 22950774 6.280000e-26 130.0
92 TraesCS5A01G141600 chr4B 100.000 39 0 0 134 172 445658058 445658096 1.070000e-08 73.1
93 TraesCS5A01G141600 chr4B 97.500 40 0 1 134 172 31536470 31536509 5.000000e-07 67.6
94 TraesCS5A01G141600 chr4B 100.000 36 0 0 134 169 327481531 327481566 5.000000e-07 67.6
95 TraesCS5A01G141600 chr4B 97.368 38 1 0 134 171 454694207 454694170 1.800000e-06 65.8
96 TraesCS5A01G141600 chr4B 97.297 37 0 1 136 172 427702973 427702938 2.320000e-05 62.1
97 TraesCS5A01G141600 chr4B 96.875 32 0 1 6906 6936 623406986 623407017 1.400000e-02 52.8
98 TraesCS5A01G141600 chrUn 77.574 272 46 10 308 575 474691220 474690960 4.820000e-32 150.0
99 TraesCS5A01G141600 chr4A 83.333 156 22 3 319 470 693241385 693241230 2.900000e-29 141.0
100 TraesCS5A01G141600 chr4A 74.394 371 70 14 302 663 437832816 437833170 1.350000e-27 135.0
101 TraesCS5A01G141600 chr4A 100.000 38 0 0 134 171 731658629 731658666 3.860000e-08 71.3
102 TraesCS5A01G141600 chr3A 97.436 39 1 0 134 172 642283903 642283865 5.000000e-07 67.6
103 TraesCS5A01G141600 chr3A 90.196 51 3 2 123 172 191465890 191465841 1.800000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G141600 chr5A 314142511 314150223 7712 False 14244.00 14244 100.00000 1 7713 1 chr5A.!!$F1 7712
1 TraesCS5A01G141600 chr5D 239580445 239587024 6579 True 2313.50 2591 92.64800 1 7713 4 chr5D.!!$R4 7712
2 TraesCS5A01G141600 chr5B 263934380 263939228 4848 False 1671.75 2340 92.87675 774 6730 4 chr5B.!!$F4 5956
3 TraesCS5A01G141600 chr5B 263780742 263781498 756 False 761.00 761 84.98800 1 794 1 chr5B.!!$F3 793
4 TraesCS5A01G141600 chr1B 504239133 504240388 1255 True 1568.00 1568 89.23200 4862 6120 1 chr1B.!!$R1 1258
5 TraesCS5A01G141600 chr1B 14261195 14261748 553 False 298.00 298 77.73900 7180 7703 1 chr1B.!!$F1 523
6 TraesCS5A01G141600 chr3B 751783673 751784921 1248 False 1537.00 1537 88.97800 4892 6134 1 chr3B.!!$F2 1242
7 TraesCS5A01G141600 chr7A 209407257 209408537 1280 True 1533.00 1533 88.50000 4868 6134 1 chr7A.!!$R1 1266
8 TraesCS5A01G141600 chr2B 2487741 2488985 1244 False 1459.00 1459 87.81600 4857 6115 1 chr2B.!!$F1 1258
9 TraesCS5A01G141600 chr2B 679703824 679704339 515 False 617.00 617 88.26900 4864 5381 1 chr2B.!!$F2 517
10 TraesCS5A01G141600 chr6D 113859811 113860960 1149 False 1406.00 1406 88.65400 4865 6041 1 chr6D.!!$F1 1176
11 TraesCS5A01G141600 chr6A 2219774 2220998 1224 False 1345.00 1345 86.46500 4862 6113 1 chr6A.!!$F1 1251
12 TraesCS5A01G141600 chr3D 461316156 461317452 1296 False 1310.00 1310 85.11100 4857 6142 1 chr3D.!!$F2 1285
13 TraesCS5A01G141600 chr1D 464349023 464350014 991 True 1253.00 1253 89.54800 4862 5850 1 chr1D.!!$R3 988
14 TraesCS5A01G141600 chr1D 306666964 306667896 932 False 1182.00 1182 89.62600 5212 6141 1 chr1D.!!$F2 929

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
293 295 0.949397 CACATGCAGTGCACACTTCT 59.051 50.000 22.44 0.0 43.04 2.85 F
298 300 1.024271 GCAGTGCACACTTCTTTCCA 58.976 50.000 21.04 0.0 40.20 3.53 F
1797 1883 1.343142 TCACCGCAAAGCTAGAGTCAA 59.657 47.619 0.00 0.0 0.00 3.18 F
2013 2128 1.452108 CCCTGCTAGGCCTTTTCCG 60.452 63.158 12.58 0.0 32.73 4.30 F
3201 3391 0.381801 CTGGATTCGGGCCATTTTCG 59.618 55.000 4.39 0.0 34.33 3.46 F
4142 4381 1.551452 TTGGGCTGTTTATTTCCCCG 58.449 50.000 0.00 0.0 38.60 5.73 F
5694 5954 0.038166 GGACACAAGGGATCCAAGCA 59.962 55.000 15.23 0.0 32.35 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1919 2028 0.108585 ATAGGGGCTATTGCACGTGG 59.891 55.000 18.88 0.44 45.19 4.94 R
2272 2427 1.129998 CAGCAATCTGACAAAGAGCGG 59.870 52.381 0.00 0.00 42.95 5.52 R
3176 3366 0.107214 TGGCCCGAATCCAGATTCAC 60.107 55.000 18.00 8.30 45.60 3.18 R
3528 3767 0.770499 TGGGACAGTTGAATGGCTCA 59.230 50.000 0.00 0.00 35.88 4.26 R
4488 4728 1.000060 TGTACCACCACTAGTCGTTGC 60.000 52.381 0.00 0.00 0.00 4.17 R
6134 6417 0.539051 CAGAGAGTGATGACCCCACC 59.461 60.000 0.00 0.00 35.23 4.61 R
7141 7436 0.035739 TCGGTTGTAGGCACTTTCCC 59.964 55.000 0.00 0.00 41.75 3.97 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 1.338136 GGGAGGAATTGGAGAGCGGA 61.338 60.000 0.00 0.00 0.00 5.54
54 55 4.278919 GGGCTACTACAAGGTGATCTAGAC 59.721 50.000 0.00 0.00 0.00 2.59
74 75 4.080299 AGACTTCTTCTTCAGTGGTTTGGT 60.080 41.667 0.00 0.00 0.00 3.67
88 89 3.227614 GGTTTGGTTAGGTGGATGTTGT 58.772 45.455 0.00 0.00 0.00 3.32
130 131 1.633945 GCTCTTGACCCTCCCCTTTTA 59.366 52.381 0.00 0.00 0.00 1.52
131 132 2.041216 GCTCTTGACCCTCCCCTTTTAA 59.959 50.000 0.00 0.00 0.00 1.52
210 212 4.499183 TGTTGAGGTTTTTGTTGCGATTT 58.501 34.783 0.00 0.00 0.00 2.17
242 244 5.914033 TCATGCCCAATGTAGTTACTAGAC 58.086 41.667 0.00 0.00 37.56 2.59
275 277 1.480789 TCCCTATTCTACAGCGTGCA 58.519 50.000 0.00 0.00 0.00 4.57
293 295 0.949397 CACATGCAGTGCACACTTCT 59.051 50.000 22.44 0.00 43.04 2.85
296 298 2.033801 ACATGCAGTGCACACTTCTTTC 59.966 45.455 22.44 0.00 43.04 2.62
298 300 1.024271 GCAGTGCACACTTCTTTCCA 58.976 50.000 21.04 0.00 40.20 3.53
303 305 3.141398 GTGCACACTTCTTTCCATGAGA 58.859 45.455 13.17 0.00 0.00 3.27
331 333 2.195139 GGGTCCGATCCTCCTCGA 59.805 66.667 0.00 0.00 41.12 4.04
333 335 2.557372 GGTCCGATCCTCCTCGAGC 61.557 68.421 6.99 0.00 41.12 5.03
342 344 1.587054 CTCCTCGAGCTTGTCCGTT 59.413 57.895 6.99 0.00 0.00 4.44
397 399 4.424711 TCCTTGGGGCGGTGATGC 62.425 66.667 0.00 0.00 0.00 3.91
413 415 2.166459 TGATGCTAGGGTTTCTCGTCAG 59.834 50.000 0.00 0.00 0.00 3.51
464 466 3.627395 TCTATGCAAGGGTTCAACGAT 57.373 42.857 0.00 0.00 0.00 3.73
480 482 1.880340 GATGAAGACTGCGGCTCCG 60.880 63.158 3.56 3.56 43.09 4.63
492 494 4.235762 GCTCCGGGGCGCTGATTA 62.236 66.667 12.52 0.00 0.00 1.75
503 505 1.813862 GCGCTGATTATTAGGGGCACA 60.814 52.381 0.00 0.00 37.53 4.57
504 506 2.783135 CGCTGATTATTAGGGGCACAT 58.217 47.619 0.00 0.00 0.00 3.21
505 507 2.485426 CGCTGATTATTAGGGGCACATG 59.515 50.000 0.00 0.00 0.00 3.21
506 508 3.490348 GCTGATTATTAGGGGCACATGT 58.510 45.455 0.00 0.00 0.00 3.21
507 509 4.651778 GCTGATTATTAGGGGCACATGTA 58.348 43.478 0.00 0.00 0.00 2.29
508 510 5.070001 GCTGATTATTAGGGGCACATGTAA 58.930 41.667 0.00 0.00 0.00 2.41
509 511 5.048713 GCTGATTATTAGGGGCACATGTAAC 60.049 44.000 0.00 0.00 0.00 2.50
510 512 6.007485 TGATTATTAGGGGCACATGTAACA 57.993 37.500 0.00 0.00 0.00 2.41
517 519 1.433064 GCACATGTAACATGCCCGG 59.567 57.895 0.00 0.00 33.06 5.73
519 521 1.458398 CACATGTAACATGCCCGGAA 58.542 50.000 0.73 0.00 0.00 4.30
528 530 1.953686 ACATGCCCGGAAATTTATCGG 59.046 47.619 19.64 19.64 43.05 4.18
637 639 6.072728 TCGTTTGATTTGATGGTCTCGAAATT 60.073 34.615 0.00 0.00 30.90 1.82
670 672 8.447787 AATTTTTATTATGTGTGACACGCTTC 57.552 30.769 19.30 2.40 37.14 3.86
724 726 3.393089 TGCTTTGAAGAGAGAGACACC 57.607 47.619 0.00 0.00 0.00 4.16
730 737 6.479972 TTTGAAGAGAGAGACACCTACAAA 57.520 37.500 0.00 0.00 0.00 2.83
731 738 5.713792 TGAAGAGAGAGACACCTACAAAG 57.286 43.478 0.00 0.00 0.00 2.77
732 739 5.141182 TGAAGAGAGAGACACCTACAAAGT 58.859 41.667 0.00 0.00 0.00 2.66
980 997 3.140506 CAAGCCAAGCCAAGCCAA 58.859 55.556 0.00 0.00 0.00 4.52
1442 1459 2.224967 ACTTTCTGCTTTGAGCTGGGAT 60.225 45.455 0.00 0.00 42.97 3.85
1510 1527 1.799258 CGCACCTTTTCTGGCTGCTT 61.799 55.000 0.00 0.00 34.40 3.91
1541 1576 5.473504 TGGAAAAGAACAGATAAGGTTGAGC 59.526 40.000 0.00 0.00 0.00 4.26
1607 1649 2.699954 AGCCATGTCGTTTACAAGAGG 58.300 47.619 0.00 0.00 42.70 3.69
1717 1803 6.426980 TGCATAGTCACAAATCAACTGATC 57.573 37.500 0.00 0.00 32.75 2.92
1738 1824 1.532505 GCATTCTGCGATCGTTGCAAT 60.533 47.619 17.81 7.35 42.70 3.56
1777 1863 3.896888 TCATCCTGTTTTTGCATGGACTT 59.103 39.130 0.00 0.00 0.00 3.01
1797 1883 1.343142 TCACCGCAAAGCTAGAGTCAA 59.657 47.619 0.00 0.00 0.00 3.18
1869 1955 3.765381 TGCTTGATGGACAAAATCTCCA 58.235 40.909 0.00 0.00 42.17 3.86
1896 2005 2.037641 TCAGCACTACTCATGTTGCAGT 59.962 45.455 0.00 0.00 0.00 4.40
1915 2024 2.027561 AGTTGCTATAAACTGGCCACGA 60.028 45.455 0.00 0.00 38.95 4.35
1919 2028 2.544267 GCTATAAACTGGCCACGATCAC 59.456 50.000 0.00 0.00 0.00 3.06
1947 2056 3.614092 CAATAGCCCCTATAGCACCATG 58.386 50.000 0.00 0.00 0.00 3.66
1956 2065 4.529769 CCCTATAGCACCATGAAGAGATCA 59.470 45.833 0.00 0.00 43.67 2.92
1993 2102 7.534085 TGCGTCCACATTAACTTTAATAGAG 57.466 36.000 0.00 0.00 32.39 2.43
2013 2128 1.452108 CCCTGCTAGGCCTTTTCCG 60.452 63.158 12.58 0.00 32.73 4.30
2026 2141 5.889289 AGGCCTTTTCCGCAACTAATTATTA 59.111 36.000 0.00 0.00 0.00 0.98
2028 2143 6.640907 GGCCTTTTCCGCAACTAATTATTATG 59.359 38.462 0.00 0.00 0.00 1.90
2031 2146 9.581099 CCTTTTCCGCAACTAATTATTATGTTT 57.419 29.630 0.00 0.00 0.00 2.83
2035 2150 8.057536 TCCGCAACTAATTATTATGTTTGGTT 57.942 30.769 0.00 0.00 0.00 3.67
2107 2248 6.307155 GTTTGTATCATTTCTCCGTTCACAG 58.693 40.000 0.00 0.00 0.00 3.66
2159 2300 3.510719 CTGCAACAATTACCAATTCCGG 58.489 45.455 0.00 0.00 0.00 5.14
2167 2308 4.921644 ATTACCAATTCCGGTATAGGGG 57.078 45.455 13.84 9.65 41.18 4.79
2228 2373 1.682684 CTGTCTACCAGGCCCTCGT 60.683 63.158 0.00 0.00 37.54 4.18
2242 2397 2.847234 TCGTGGTGCTGGTTCCCT 60.847 61.111 0.00 0.00 0.00 4.20
2329 2484 7.215789 CAGATGAGTCTAGGAATGTTTATGCT 58.784 38.462 0.00 0.00 32.09 3.79
2350 2505 2.264813 GTGTTAGCTTGGCGATTCGTA 58.735 47.619 8.03 0.00 0.00 3.43
2496 2652 2.839486 TGTGAGTTGCCCTTCTACTG 57.161 50.000 0.00 0.00 31.01 2.74
2550 2706 1.967319 TCTTCAACAGTGCCTTGGTC 58.033 50.000 0.00 0.00 0.00 4.02
2619 2776 3.236047 ACCATACTGTGTCACTGTACCA 58.764 45.455 20.94 5.79 35.78 3.25
2622 2779 4.021456 CCATACTGTGTCACTGTACCAGAA 60.021 45.833 20.94 4.50 35.78 3.02
2627 2784 4.157246 TGTGTCACTGTACCAGAATACCT 58.843 43.478 4.27 0.00 35.18 3.08
2649 2806 3.882888 TGGGCGCTTATTCCTTAATGAAG 59.117 43.478 7.64 0.00 0.00 3.02
2718 2906 9.747898 TGTTTAGTCCATATCTTGTAATGGTTT 57.252 29.630 1.56 0.00 42.77 3.27
2870 3059 2.179517 GTCACCGGCGTCAGAGAG 59.820 66.667 6.01 0.00 0.00 3.20
2883 3072 4.212214 GCGTCAGAGAGTGAAAGAATTGTT 59.788 41.667 0.00 0.00 36.74 2.83
2885 3074 6.073765 GCGTCAGAGAGTGAAAGAATTGTTAA 60.074 38.462 0.00 0.00 36.74 2.01
2933 3122 2.964209 TCTGGCCTATCGGAGAGATTT 58.036 47.619 3.32 0.00 43.63 2.17
3068 3257 9.528018 GAATTTGGAATCTGAAACAAACAACTA 57.472 29.630 6.84 0.00 35.87 2.24
3089 3278 2.248280 TTCGTTTGCCAGTGAAGCTA 57.752 45.000 0.00 0.00 0.00 3.32
3095 3284 3.988976 TTGCCAGTGAAGCTAGATCTT 57.011 42.857 0.00 0.00 0.00 2.40
3108 3297 4.718774 AGCTAGATCTTGGACCAGATTCAA 59.281 41.667 0.00 0.00 33.36 2.69
3155 3344 7.725251 TGGAATCTGAAACAAACAGCTATTTT 58.275 30.769 0.00 0.00 35.61 1.82
3176 3366 1.401905 GAATAGCTTTGCCGGTGAAGG 59.598 52.381 17.07 7.00 0.00 3.46
3186 3376 0.613260 CCGGTGAAGGTGAATCTGGA 59.387 55.000 0.00 0.00 0.00 3.86
3201 3391 0.381801 CTGGATTCGGGCCATTTTCG 59.618 55.000 4.39 0.00 34.33 3.46
3289 3480 7.415541 CCACATGTGATTCGAATCCAATAAAGT 60.416 37.037 30.16 17.98 34.50 2.66
3291 3482 7.970061 ACATGTGATTCGAATCCAATAAAGTTG 59.030 33.333 30.16 21.12 34.50 3.16
3335 3572 3.551887 GAAACAAACGGGGCCTGCG 62.552 63.158 13.63 6.44 0.00 5.18
3489 3728 6.604735 TTCTTCTTCTAAGTTGTTCACTGC 57.395 37.500 0.00 0.00 35.12 4.40
3491 3730 3.390135 TCTTCTAAGTTGTTCACTGCGG 58.610 45.455 0.00 0.00 35.12 5.69
3493 3732 2.479837 TCTAAGTTGTTCACTGCGGTG 58.520 47.619 20.12 20.12 44.23 4.94
3528 3767 5.698104 TCATCAATAGGCCATCTCACAAAT 58.302 37.500 5.01 0.00 0.00 2.32
3593 3832 2.885266 CCTGAGTTCGATCCGGATTCTA 59.115 50.000 20.22 4.20 0.00 2.10
3639 3878 7.660112 AGTGATTATGCAACAGAATTCAAACA 58.340 30.769 8.44 0.00 0.00 2.83
3834 4073 7.557719 ACTGAAACAGGTCTGGAAATATTATGG 59.442 37.037 2.87 0.00 35.51 2.74
4103 4342 5.773680 ACTAGTGCTGTCTAGTTCTTGGTTA 59.226 40.000 0.00 0.00 45.43 2.85
4114 4353 7.275999 GTCTAGTTCTTGGTTAGTGCTGATAAC 59.724 40.741 0.00 0.00 33.29 1.89
4119 4358 6.040247 TCTTGGTTAGTGCTGATAACGTATG 58.960 40.000 0.00 0.00 34.58 2.39
4138 4377 7.033185 ACGTATGATTTTGGGCTGTTTATTTC 58.967 34.615 0.00 0.00 0.00 2.17
4139 4378 6.475402 CGTATGATTTTGGGCTGTTTATTTCC 59.525 38.462 0.00 0.00 0.00 3.13
4142 4381 1.551452 TTGGGCTGTTTATTTCCCCG 58.449 50.000 0.00 0.00 38.60 5.73
4146 4385 2.371306 GGCTGTTTATTTCCCCGCTTA 58.629 47.619 0.00 0.00 0.00 3.09
4383 4622 3.884226 GGGGGTCAAGCTCTTTAGG 57.116 57.895 0.00 0.00 0.00 2.69
4476 4716 5.867330 TGATTTTCAAGTTTGGCCATCAAT 58.133 33.333 6.09 0.00 34.98 2.57
4480 4720 6.374565 TTTCAAGTTTGGCCATCAATTTTG 57.625 33.333 6.09 8.46 34.98 2.44
4488 4728 6.374565 TTGGCCATCAATTTTGTTTTCTTG 57.625 33.333 6.09 0.00 0.00 3.02
4503 4743 2.148916 TCTTGCAACGACTAGTGGTG 57.851 50.000 11.59 8.45 0.00 4.17
4595 4835 6.294176 GGTCTACAAATGGCAATATGCTAAGG 60.294 42.308 2.00 0.00 44.28 2.69
4728 4968 3.594603 ACTGTAGAAGCGCACTATGTT 57.405 42.857 11.47 0.00 0.00 2.71
4759 4999 6.708054 GCTCATTTTTATAGCTTAGAGGCTCA 59.292 38.462 18.26 0.00 42.97 4.26
4771 5015 3.064900 AGAGGCTCAATGAGAACCAAC 57.935 47.619 18.26 5.44 34.80 3.77
4772 5016 2.087646 GAGGCTCAATGAGAACCAACC 58.912 52.381 15.38 4.33 34.80 3.77
4773 5017 1.425066 AGGCTCAATGAGAACCAACCA 59.575 47.619 15.38 0.00 34.80 3.67
4774 5018 2.158475 AGGCTCAATGAGAACCAACCAA 60.158 45.455 15.38 0.00 34.80 3.67
4797 5041 2.969262 TGTACCTCAACTGTGGTGATCA 59.031 45.455 12.61 0.00 41.50 2.92
5026 5277 2.487986 CCTATCCCCTTGATGAAGGTGC 60.488 54.545 10.28 0.00 46.84 5.01
5066 5318 1.227999 ACCAAACAGACATCGCACCG 61.228 55.000 0.00 0.00 0.00 4.94
5188 5445 1.210478 CCGTCACCTCCATCTTCCATT 59.790 52.381 0.00 0.00 0.00 3.16
5208 5465 2.755686 TGATCCATCCTCAGAGCAGAA 58.244 47.619 0.00 0.00 0.00 3.02
5209 5466 2.699321 TGATCCATCCTCAGAGCAGAAG 59.301 50.000 0.00 0.00 0.00 2.85
5210 5467 2.539432 TCCATCCTCAGAGCAGAAGA 57.461 50.000 0.00 0.00 0.00 2.87
5296 5555 2.835431 CCCGCGAGTCCATCTCCT 60.835 66.667 8.23 0.00 39.84 3.69
5353 5612 3.654020 GATCCGCCGCCAGCAATC 61.654 66.667 0.00 0.00 44.04 2.67
5515 5775 2.036604 GAGGTAGCATAGAGTGGCCTTC 59.963 54.545 3.32 1.37 0.00 3.46
5519 5779 1.630369 AGCATAGAGTGGCCTTCAACA 59.370 47.619 3.32 0.00 0.00 3.33
5562 5822 2.355837 GGAACGACGCAGACAGCA 60.356 61.111 0.00 0.00 46.13 4.41
5570 5830 4.996434 GCAGACAGCACCGCCACT 62.996 66.667 0.00 0.00 44.79 4.00
5607 5867 1.448985 GCCGATAGCAGGTTTTCACA 58.551 50.000 0.00 0.00 42.97 3.58
5654 5914 1.080501 CATCTCGTGCACGGACTGT 60.081 57.895 36.41 16.90 40.29 3.55
5691 5951 1.351017 GACTGGACACAAGGGATCCAA 59.649 52.381 15.23 0.00 41.95 3.53
5694 5954 0.038166 GGACACAAGGGATCCAAGCA 59.962 55.000 15.23 0.00 32.35 3.91
5737 6000 2.047274 CACCACGGTGCCTACAGG 60.047 66.667 2.68 0.00 39.39 4.00
5948 6213 2.295253 GGATCTCCGTCGAACAATGT 57.705 50.000 0.00 0.00 0.00 2.71
5956 6221 3.722295 CGAACAATGTGCCGCCGT 61.722 61.111 0.00 0.00 0.00 5.68
6067 6350 2.416432 GGACGAAGGAGACGAGGGG 61.416 68.421 0.00 0.00 34.70 4.79
6072 6355 0.105913 GAAGGAGACGAGGGGAGGAT 60.106 60.000 0.00 0.00 0.00 3.24
6075 6358 1.456705 GAGACGAGGGGAGGATGCT 60.457 63.158 0.00 0.00 0.00 3.79
6145 6428 3.739613 GGTGGGGGTGGGGTCATC 61.740 72.222 0.00 0.00 0.00 2.92
6146 6429 2.938798 GTGGGGGTGGGGTCATCA 60.939 66.667 0.00 0.00 0.00 3.07
6151 6434 1.627297 GGGGTGGGGTCATCACTCTC 61.627 65.000 0.00 0.00 35.99 3.20
6276 6559 2.557924 CACAAGGCATTTTAGCAGACCA 59.442 45.455 0.00 0.00 35.83 4.02
6313 6597 6.573664 TGGTTTGAATAATCTCAACCACAG 57.426 37.500 9.79 0.00 41.14 3.66
6326 6610 6.542821 TCTCAACCACAGATTAACAAATCCT 58.457 36.000 0.00 0.00 0.00 3.24
6401 6685 2.165234 ACTGGATCTGATGTGTCTGACG 59.835 50.000 2.98 0.00 35.50 4.35
6496 6789 4.625311 CCACGAAGCAAAAGTTCTTGTTTT 59.375 37.500 0.00 0.00 30.88 2.43
6508 6801 7.637709 AAGTTCTTGTTTTTCTTTCACACAC 57.362 32.000 0.00 0.00 0.00 3.82
6686 6979 3.112263 CGGATAGAATATGGGGGCCTTA 58.888 50.000 0.84 0.00 0.00 2.69
6725 7018 5.353678 AGAACATTCTGAGAGCAAATAGTGC 59.646 40.000 0.00 0.00 44.45 4.40
6741 7034 7.601856 CAAATAGTGCCTGATGGTAAAAGAAA 58.398 34.615 0.00 0.00 35.27 2.52
6742 7035 7.396540 AATAGTGCCTGATGGTAAAAGAAAG 57.603 36.000 0.00 0.00 35.27 2.62
6743 7036 4.729868 AGTGCCTGATGGTAAAAGAAAGT 58.270 39.130 0.00 0.00 35.27 2.66
6745 7038 6.303839 AGTGCCTGATGGTAAAAGAAAGTAA 58.696 36.000 0.00 0.00 35.27 2.24
6746 7039 6.948309 AGTGCCTGATGGTAAAAGAAAGTAAT 59.052 34.615 0.00 0.00 35.27 1.89
6747 7040 7.029563 GTGCCTGATGGTAAAAGAAAGTAATG 58.970 38.462 0.00 0.00 35.27 1.90
6748 7041 6.719370 TGCCTGATGGTAAAAGAAAGTAATGT 59.281 34.615 0.00 0.00 35.27 2.71
6749 7042 7.885922 TGCCTGATGGTAAAAGAAAGTAATGTA 59.114 33.333 0.00 0.00 35.27 2.29
6750 7043 8.182227 GCCTGATGGTAAAAGAAAGTAATGTAC 58.818 37.037 0.00 0.00 35.27 2.90
6751 7044 9.449719 CCTGATGGTAAAAGAAAGTAATGTACT 57.550 33.333 0.00 0.00 41.73 2.73
6753 7046 9.444600 TGATGGTAAAAGAAAGTAATGTACTCC 57.555 33.333 0.00 0.00 38.26 3.85
6835 7128 1.000274 GGTTTTGTTGATTGCGCCTCT 60.000 47.619 4.18 0.00 0.00 3.69
6851 7144 3.117171 CTGCAGCGACACAGAGCC 61.117 66.667 0.00 0.00 35.90 4.70
6867 7160 7.882179 ACACAGAGCCGTTATTTTTCTAATTT 58.118 30.769 0.00 0.00 0.00 1.82
6963 7256 6.093082 TCACATCTAAATTGTGACATCAGCAG 59.907 38.462 2.56 0.00 46.31 4.24
6975 7268 0.108424 ATCAGCAGAAGTCAGCGGTC 60.108 55.000 0.00 0.00 33.30 4.79
7005 7298 4.504826 CCCGCGTTGTCTTATTTTTGTTTT 59.495 37.500 4.92 0.00 0.00 2.43
7020 7313 1.029681 GTTTTTCCCAACTGGAGCGT 58.970 50.000 0.00 0.00 46.24 5.07
7046 7339 2.740826 CCCACCGCGTCGTTCATT 60.741 61.111 4.92 0.00 0.00 2.57
7047 7340 2.736682 CCCACCGCGTCGTTCATTC 61.737 63.158 4.92 0.00 0.00 2.67
7048 7341 1.736645 CCACCGCGTCGTTCATTCT 60.737 57.895 4.92 0.00 0.00 2.40
7049 7342 1.683790 CCACCGCGTCGTTCATTCTC 61.684 60.000 4.92 0.00 0.00 2.87
7050 7343 0.732880 CACCGCGTCGTTCATTCTCT 60.733 55.000 4.92 0.00 0.00 3.10
7058 7351 5.618561 GCGTCGTTCATTCTCTTTATTTGT 58.381 37.500 0.00 0.00 0.00 2.83
7078 7371 2.815647 CTTTCCCGACTGGAGCGC 60.816 66.667 0.00 0.00 46.24 5.92
7084 7377 2.470286 CGACTGGAGCGCGAAAAC 59.530 61.111 12.10 0.00 0.00 2.43
7103 7398 5.621197 AAACAAATGTAAGCGATGCAGTA 57.379 34.783 0.00 0.00 0.00 2.74
7114 7409 2.218759 GCGATGCAGTACGTTGAATAGG 59.781 50.000 0.00 0.00 0.00 2.57
7131 7426 5.488919 TGAATAGGAATTGAACTCAGGACCT 59.511 40.000 0.00 0.00 0.00 3.85
7132 7427 3.990959 AGGAATTGAACTCAGGACCTC 57.009 47.619 0.00 0.00 0.00 3.85
7133 7428 2.234908 AGGAATTGAACTCAGGACCTCG 59.765 50.000 0.00 0.00 0.00 4.63
7135 7430 3.516615 GAATTGAACTCAGGACCTCGAG 58.483 50.000 5.13 5.13 35.30 4.04
7136 7431 1.996798 TTGAACTCAGGACCTCGAGT 58.003 50.000 12.31 16.43 44.30 4.18
7137 7432 2.873094 TGAACTCAGGACCTCGAGTA 57.127 50.000 20.25 8.76 41.60 2.59
7138 7433 2.434428 TGAACTCAGGACCTCGAGTAC 58.566 52.381 20.25 4.63 41.60 2.73
7139 7434 2.040012 TGAACTCAGGACCTCGAGTACT 59.960 50.000 20.25 0.00 42.05 2.73
7140 7435 2.883122 ACTCAGGACCTCGAGTACTT 57.117 50.000 19.17 0.00 35.39 2.24
7141 7436 2.438411 ACTCAGGACCTCGAGTACTTG 58.562 52.381 19.17 11.14 35.39 3.16
7142 7437 1.746220 CTCAGGACCTCGAGTACTTGG 59.254 57.143 12.31 9.23 35.39 3.61
7143 7438 0.818296 CAGGACCTCGAGTACTTGGG 59.182 60.000 12.31 6.65 35.39 4.12
7144 7439 0.702902 AGGACCTCGAGTACTTGGGA 59.297 55.000 11.97 2.05 35.39 4.37
7145 7440 1.076677 AGGACCTCGAGTACTTGGGAA 59.923 52.381 11.97 0.00 35.39 3.97
7146 7441 1.897802 GGACCTCGAGTACTTGGGAAA 59.102 52.381 11.97 0.00 0.00 3.13
7147 7442 2.094130 GGACCTCGAGTACTTGGGAAAG 60.094 54.545 11.97 0.71 0.00 2.62
7148 7443 2.561858 GACCTCGAGTACTTGGGAAAGT 59.438 50.000 11.97 0.67 36.82 2.66
7149 7444 2.299297 ACCTCGAGTACTTGGGAAAGTG 59.701 50.000 11.97 0.00 34.37 3.16
7150 7445 2.338500 CTCGAGTACTTGGGAAAGTGC 58.662 52.381 3.60 0.25 35.93 4.40
7151 7446 1.001633 TCGAGTACTTGGGAAAGTGCC 59.998 52.381 10.33 0.00 36.26 5.01
7152 7447 1.002087 CGAGTACTTGGGAAAGTGCCT 59.998 52.381 1.70 0.00 36.26 4.75
7153 7448 2.232941 CGAGTACTTGGGAAAGTGCCTA 59.767 50.000 1.70 0.00 36.26 3.93
7154 7449 3.597255 GAGTACTTGGGAAAGTGCCTAC 58.403 50.000 0.00 0.00 36.26 3.18
7155 7450 2.976882 AGTACTTGGGAAAGTGCCTACA 59.023 45.455 1.42 0.00 36.26 2.74
7156 7451 3.393278 AGTACTTGGGAAAGTGCCTACAA 59.607 43.478 1.42 0.00 36.26 2.41
7157 7452 2.583143 ACTTGGGAAAGTGCCTACAAC 58.417 47.619 0.00 0.00 0.00 3.32
7158 7453 1.886542 CTTGGGAAAGTGCCTACAACC 59.113 52.381 0.00 0.00 0.00 3.77
7159 7454 0.250553 TGGGAAAGTGCCTACAACCG 60.251 55.000 0.00 0.00 0.00 4.44
7160 7455 0.035739 GGGAAAGTGCCTACAACCGA 59.964 55.000 0.00 0.00 0.00 4.69
7161 7456 1.339727 GGGAAAGTGCCTACAACCGAT 60.340 52.381 0.00 0.00 0.00 4.18
7162 7457 1.737793 GGAAAGTGCCTACAACCGATG 59.262 52.381 0.00 0.00 0.00 3.84
7163 7458 1.737793 GAAAGTGCCTACAACCGATGG 59.262 52.381 0.00 0.00 0.00 3.51
7174 7469 2.224606 CAACCGATGGATGCTATTGCT 58.775 47.619 0.00 0.00 40.48 3.91
7207 7502 4.755123 ACAGGAAACGTTCAAGAACATAGG 59.245 41.667 12.86 0.00 41.20 2.57
7450 7769 2.225727 CCCCGAACAGTTTTTAGAGTGC 59.774 50.000 0.00 0.00 0.00 4.40
7464 7783 4.557942 GTGCGGGCACTTTTGATG 57.442 55.556 16.14 0.00 43.12 3.07
7475 7795 4.502950 GGCACTTTTGATGATTCCAACCAA 60.503 41.667 0.00 0.00 0.00 3.67
7648 7984 9.004717 TCATAACATTCAAAGAAAATGTCCGTA 57.995 29.630 2.29 0.00 44.44 4.02
7649 7985 9.277565 CATAACATTCAAAGAAAATGTCCGTAG 57.722 33.333 2.29 0.00 44.44 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 3.658725 AGATCACCTTGTAGTAGCCCAT 58.341 45.455 0.00 0.00 0.00 4.00
54 55 5.239525 CCTAACCAAACCACTGAAGAAGAAG 59.760 44.000 0.00 0.00 0.00 2.85
74 75 0.322098 CCGCCACAACATCCACCTAA 60.322 55.000 0.00 0.00 0.00 2.69
88 89 2.282816 CAAATCCACCACCCGCCA 60.283 61.111 0.00 0.00 0.00 5.69
130 131 9.850628 GCATGAGTGTGCATATCATATATTTTT 57.149 29.630 9.95 0.00 44.43 1.94
210 212 3.376636 ACATTGGGCATGATTCCATCAA 58.623 40.909 0.00 0.00 43.50 2.57
242 244 8.265055 TGTAGAATAGGGATTAAACTTGACCAG 58.735 37.037 0.00 0.00 0.00 4.00
275 277 1.683943 AAGAAGTGTGCACTGCATGT 58.316 45.000 19.41 0.00 41.91 3.21
282 284 3.141398 TCTCATGGAAAGAAGTGTGCAC 58.859 45.455 10.75 10.75 0.00 4.57
283 285 3.490439 TCTCATGGAAAGAAGTGTGCA 57.510 42.857 0.00 0.00 0.00 4.57
284 286 4.217118 ACAATCTCATGGAAAGAAGTGTGC 59.783 41.667 0.00 0.00 0.00 4.57
288 290 6.148480 CGAAAGACAATCTCATGGAAAGAAGT 59.852 38.462 0.00 0.00 0.00 3.01
293 295 4.009675 CCCGAAAGACAATCTCATGGAAA 58.990 43.478 0.00 0.00 0.00 3.13
296 298 2.292267 CCCCGAAAGACAATCTCATGG 58.708 52.381 0.00 0.00 0.00 3.66
298 300 2.092914 GGACCCCGAAAGACAATCTCAT 60.093 50.000 0.00 0.00 0.00 2.90
342 344 0.606604 GCCCTGTCGAGTAAGTCCAA 59.393 55.000 0.00 0.00 0.00 3.53
348 350 2.050350 CCGGAGCCCTGTCGAGTAA 61.050 63.158 0.00 0.00 0.00 2.24
367 369 1.376037 CAAGGAGACGGCAGGAACC 60.376 63.158 0.00 0.00 0.00 3.62
376 378 4.760047 CACCGCCCCAAGGAGACG 62.760 72.222 0.00 0.00 34.21 4.18
397 399 1.204941 CCACCTGACGAGAAACCCTAG 59.795 57.143 0.00 0.00 0.00 3.02
413 415 0.605319 TGACACCAAATCTCGCCACC 60.605 55.000 0.00 0.00 0.00 4.61
464 466 4.069232 CCGGAGCCGCAGTCTTCA 62.069 66.667 0.00 0.00 38.24 3.02
480 482 0.322546 CCCCTAATAATCAGCGCCCC 60.323 60.000 2.29 0.00 0.00 5.80
489 491 5.243730 GCATGTTACATGTGCCCCTAATAAT 59.756 40.000 23.88 0.00 32.88 1.28
492 494 2.958355 GCATGTTACATGTGCCCCTAAT 59.042 45.455 23.88 0.00 32.88 1.73
503 505 5.278266 CGATAAATTTCCGGGCATGTTACAT 60.278 40.000 0.00 0.00 0.00 2.29
504 506 4.035792 CGATAAATTTCCGGGCATGTTACA 59.964 41.667 0.00 0.00 0.00 2.41
505 507 4.533222 CGATAAATTTCCGGGCATGTTAC 58.467 43.478 0.00 0.00 0.00 2.50
506 508 3.566322 CCGATAAATTTCCGGGCATGTTA 59.434 43.478 18.79 0.00 39.59 2.41
507 509 2.360801 CCGATAAATTTCCGGGCATGTT 59.639 45.455 18.79 0.00 39.59 2.71
508 510 1.953686 CCGATAAATTTCCGGGCATGT 59.046 47.619 18.79 0.00 39.59 3.21
509 511 1.953686 ACCGATAAATTTCCGGGCATG 59.046 47.619 25.82 9.37 46.83 4.06
510 512 2.358322 ACCGATAAATTTCCGGGCAT 57.642 45.000 25.82 10.55 46.83 4.40
514 516 7.163271 GTCAATGACAACCGATAAATTTCCGG 61.163 42.308 22.67 22.67 39.61 5.14
515 517 5.737290 GTCAATGACAACCGATAAATTTCCG 59.263 40.000 8.74 0.00 32.09 4.30
517 519 7.273381 CCTTGTCAATGACAACCGATAAATTTC 59.727 37.037 23.28 0.00 45.88 2.17
519 521 6.208599 ACCTTGTCAATGACAACCGATAAATT 59.791 34.615 23.28 0.00 45.88 1.82
575 577 3.025176 GAGCCATCGACGCGCTAC 61.025 66.667 5.73 0.00 31.61 3.58
659 661 3.615496 ACCATAAATACGAAGCGTGTCAC 59.385 43.478 2.33 0.00 41.39 3.67
705 707 3.676291 AGGTGTCTCTCTCTTCAAAGC 57.324 47.619 0.00 0.00 0.00 3.51
730 737 6.473758 GGTCCCAAAATAAGTGTCTCTAACT 58.526 40.000 0.00 0.00 0.00 2.24
731 738 5.350640 CGGTCCCAAAATAAGTGTCTCTAAC 59.649 44.000 0.00 0.00 0.00 2.34
732 739 5.246656 TCGGTCCCAAAATAAGTGTCTCTAA 59.753 40.000 0.00 0.00 0.00 2.10
1404 1421 4.308458 TCACCAACCACGGAGCCG 62.308 66.667 7.48 7.48 46.03 5.52
1442 1459 8.612619 GCTGTAATCTTTATCGGAGATGAAAAA 58.387 33.333 0.00 0.00 45.12 1.94
1738 1824 3.648067 GGATGATTACCATGGTGAGGAGA 59.352 47.826 28.17 2.64 35.17 3.71
1777 1863 0.966179 TGACTCTAGCTTTGCGGTGA 59.034 50.000 0.00 0.00 0.00 4.02
1858 1944 4.217118 GTGCTGATTCAGTGGAGATTTTGT 59.783 41.667 14.90 0.00 33.43 2.83
1869 1955 4.815533 ACATGAGTAGTGCTGATTCAGT 57.184 40.909 14.90 0.00 33.43 3.41
1896 2005 2.772077 TCGTGGCCAGTTTATAGCAA 57.228 45.000 5.11 0.00 0.00 3.91
1915 2024 0.748005 GGGCTATTGCACGTGGTGAT 60.748 55.000 18.88 0.10 41.91 3.06
1919 2028 0.108585 ATAGGGGCTATTGCACGTGG 59.891 55.000 18.88 0.44 45.19 4.94
1947 2056 5.866092 GCAACCTTTTTCCAATGATCTCTTC 59.134 40.000 0.00 0.00 0.00 2.87
1956 2065 2.035632 TGGACGCAACCTTTTTCCAAT 58.964 42.857 0.00 0.00 33.31 3.16
2035 2150 1.755380 GGCGCTCTCCTAAAGGTTCTA 59.245 52.381 7.64 0.00 36.34 2.10
2069 2210 3.503839 AAACCCCGGGCAGAACCA 61.504 61.111 17.73 0.00 42.05 3.67
2070 2211 2.414658 TACAAACCCCGGGCAGAACC 62.415 60.000 17.73 0.00 37.93 3.62
2167 2308 2.358737 CACAGGAGCGGGTGAACC 60.359 66.667 0.00 0.00 37.18 3.62
2181 2322 4.682778 AAGTACTGTCAAAGCTACCACA 57.317 40.909 0.00 0.00 0.00 4.17
2272 2427 1.129998 CAGCAATCTGACAAAGAGCGG 59.870 52.381 0.00 0.00 42.95 5.52
2273 2428 1.802960 ACAGCAATCTGACAAAGAGCG 59.197 47.619 0.00 0.00 42.95 5.03
2329 2484 1.075542 CGAATCGCCAAGCTAACACA 58.924 50.000 0.00 0.00 0.00 3.72
2350 2505 9.965902 ACAAGAACAGAATCCTTCATTAGTAAT 57.034 29.630 0.00 0.00 0.00 1.89
2383 2538 3.675225 CACGGTTTCTACATCTGTCTGTG 59.325 47.826 0.00 0.00 0.00 3.66
2496 2652 3.329929 ACGGTTCAATCTAAGGTCCAC 57.670 47.619 0.00 0.00 0.00 4.02
2550 2706 3.243501 CCAATGTGTGAGTGAAGTTTGGG 60.244 47.826 0.00 0.00 31.00 4.12
2619 2776 2.224548 GGAATAAGCGCCCAGGTATTCT 60.225 50.000 2.29 0.00 0.00 2.40
2622 2779 1.435256 AGGAATAAGCGCCCAGGTAT 58.565 50.000 2.29 0.00 0.00 2.73
2627 2784 3.569194 TCATTAAGGAATAAGCGCCCA 57.431 42.857 2.29 0.00 0.00 5.36
2649 2806 3.314388 CTTCTTCCGCAGCAACGCC 62.314 63.158 0.00 0.00 0.00 5.68
2683 2840 6.595682 AGATATGGACTAAACACCAATGAGG 58.404 40.000 0.00 0.00 45.67 3.86
2684 2841 7.554118 ACAAGATATGGACTAAACACCAATGAG 59.446 37.037 0.00 0.00 0.00 2.90
2685 2842 7.402054 ACAAGATATGGACTAAACACCAATGA 58.598 34.615 0.00 0.00 0.00 2.57
2686 2843 7.630242 ACAAGATATGGACTAAACACCAATG 57.370 36.000 0.00 0.00 0.00 2.82
2687 2844 9.920946 ATTACAAGATATGGACTAAACACCAAT 57.079 29.630 0.00 0.00 0.00 3.16
2688 2845 9.173021 CATTACAAGATATGGACTAAACACCAA 57.827 33.333 0.00 0.00 0.00 3.67
2689 2846 7.773224 CCATTACAAGATATGGACTAAACACCA 59.227 37.037 0.00 0.00 43.25 4.17
2690 2847 7.773690 ACCATTACAAGATATGGACTAAACACC 59.226 37.037 8.03 0.00 43.25 4.16
2793 2982 0.408309 AAGGAGGTTAAACCCCCAGC 59.592 55.000 0.00 0.00 39.75 4.85
2795 2984 2.489437 CGAAAAGGAGGTTAAACCCCCA 60.489 50.000 0.00 0.00 39.75 4.96
2949 3138 6.070995 ACAAAATGCATGATCCAGTTTGATCT 60.071 34.615 22.70 6.27 45.69 2.75
3068 3257 1.956477 AGCTTCACTGGCAAACGAAAT 59.044 42.857 0.00 0.00 0.00 2.17
3089 3278 5.511386 AAGTTGAATCTGGTCCAAGATCT 57.489 39.130 0.00 0.00 35.83 2.75
3095 3284 2.238521 GGCAAAGTTGAATCTGGTCCA 58.761 47.619 0.00 0.00 0.00 4.02
3127 3316 4.518211 AGCTGTTTGTTTCAGATTCCAGAG 59.482 41.667 0.00 0.00 35.20 3.35
3155 3344 2.083774 CTTCACCGGCAAAGCTATTCA 58.916 47.619 0.00 0.00 0.00 2.57
3176 3366 0.107214 TGGCCCGAATCCAGATTCAC 60.107 55.000 18.00 8.30 45.60 3.18
3186 3376 1.944234 GCACCGAAAATGGCCCGAAT 61.944 55.000 0.00 0.00 0.00 3.34
3201 3391 4.584688 GCTTCAGGCAATTGCACC 57.415 55.556 30.32 15.06 44.36 5.01
3289 3480 6.477053 TTGATTGGATCCTGTTTGTTTCAA 57.523 33.333 14.23 7.53 0.00 2.69
3291 3482 5.406477 GCTTTGATTGGATCCTGTTTGTTTC 59.594 40.000 14.23 0.00 0.00 2.78
3392 3631 7.041167 TGTGAACTCCATGTTATGTTCTTCTTG 60.041 37.037 14.10 0.00 39.30 3.02
3489 3728 4.804608 TGATGAAACAGTAACAACACCG 57.195 40.909 0.00 0.00 0.00 4.94
3491 3730 6.801862 GCCTATTGATGAAACAGTAACAACAC 59.198 38.462 0.00 0.00 0.00 3.32
3493 3732 6.072175 TGGCCTATTGATGAAACAGTAACAAC 60.072 38.462 3.32 0.00 0.00 3.32
3528 3767 0.770499 TGGGACAGTTGAATGGCTCA 59.230 50.000 0.00 0.00 35.88 4.26
3593 3832 6.377429 TCACTTATATCCGAGACAAACTCAGT 59.623 38.462 0.00 0.00 45.14 3.41
3639 3878 5.250313 AGAGGAATTTCCACAACATCTCTCT 59.750 40.000 17.57 4.71 39.61 3.10
3834 4073 4.473477 ACTGAAGACCTAGCACAATACC 57.527 45.455 0.00 0.00 0.00 2.73
4103 4342 5.296780 CCCAAAATCATACGTTATCAGCACT 59.703 40.000 0.00 0.00 0.00 4.40
4114 4353 6.475402 GGAAATAAACAGCCCAAAATCATACG 59.525 38.462 0.00 0.00 0.00 3.06
4119 4358 4.513442 GGGGAAATAAACAGCCCAAAATC 58.487 43.478 0.00 0.00 42.52 2.17
4138 4377 5.065602 GGTCAGTTAAAACTTATAAGCGGGG 59.934 44.000 12.54 0.00 37.08 5.73
4139 4378 5.878669 AGGTCAGTTAAAACTTATAAGCGGG 59.121 40.000 12.54 0.00 37.08 6.13
4333 4572 4.390297 AGAAATCTACTGTTGCTCTTTCGC 59.610 41.667 0.00 0.00 0.00 4.70
4369 4608 3.198853 AGTGGGATCCTAAAGAGCTTGAC 59.801 47.826 12.58 0.00 0.00 3.18
4476 4716 5.797934 CACTAGTCGTTGCAAGAAAACAAAA 59.202 36.000 0.00 0.00 0.00 2.44
4480 4720 3.311596 ACCACTAGTCGTTGCAAGAAAAC 59.688 43.478 0.00 0.00 0.00 2.43
4488 4728 1.000060 TGTACCACCACTAGTCGTTGC 60.000 52.381 0.00 0.00 0.00 4.17
4503 4743 7.384477 ACCTGACAGTCTTAATAAAGTGTACC 58.616 38.462 1.31 0.00 34.13 3.34
4526 4766 6.823497 TCTATAACAATAACCAGGCTGTACC 58.177 40.000 14.43 0.00 39.61 3.34
4595 4835 2.485903 CAGAAGCAGATGATCAGAGCC 58.514 52.381 0.09 0.00 0.00 4.70
4695 4935 6.635239 GCGCTTCTACAGTTTTATTTCAAACA 59.365 34.615 0.00 0.00 38.86 2.83
4759 4999 4.141251 AGGTACACTTGGTTGGTTCTCATT 60.141 41.667 0.00 0.00 0.00 2.57
4771 5015 2.158813 ACCACAGTTGAGGTACACTTGG 60.159 50.000 0.00 3.57 37.24 3.61
4772 5016 2.872245 CACCACAGTTGAGGTACACTTG 59.128 50.000 0.84 0.00 36.88 3.16
4773 5017 2.769663 TCACCACAGTTGAGGTACACTT 59.230 45.455 0.84 0.00 36.88 3.16
4774 5018 2.394632 TCACCACAGTTGAGGTACACT 58.605 47.619 0.84 0.00 36.88 3.55
4797 5041 7.986085 AAGCATACTGTAGTTGAGTTTTCAT 57.014 32.000 0.00 0.00 32.27 2.57
5066 5318 2.872858 CCGGCTTTAGATGTTAGGCTTC 59.127 50.000 0.00 0.00 32.77 3.86
5188 5445 2.466547 TCTGCTCTGAGGATGGATCA 57.533 50.000 6.83 0.00 0.00 2.92
5208 5465 0.687354 AAGGTCGGTGCATCAGTTCT 59.313 50.000 0.00 0.00 0.00 3.01
5209 5466 0.798776 CAAGGTCGGTGCATCAGTTC 59.201 55.000 0.00 0.00 0.00 3.01
5210 5467 1.237285 GCAAGGTCGGTGCATCAGTT 61.237 55.000 0.00 0.00 41.80 3.16
5353 5612 0.671781 AGCGGTGCTTCAGCTTACAG 60.672 55.000 0.00 0.00 44.53 2.74
5515 5775 2.009108 CATCGCCGTGGAGATGTTG 58.991 57.895 20.48 1.55 43.91 3.33
5593 5853 4.202357 ACAGATCTGTGTGAAAACCTGCTA 60.202 41.667 27.37 0.00 43.11 3.49
5607 5867 3.383185 GGAGGATCTTCGAACAGATCTGT 59.617 47.826 22.89 22.89 46.02 3.41
5654 5914 3.083349 CCCCGGCAGAGATGGTGA 61.083 66.667 0.00 0.00 0.00 4.02
5679 5939 1.000396 GGCTGCTTGGATCCCTTGT 60.000 57.895 9.90 0.00 0.00 3.16
5680 5940 2.117156 CGGCTGCTTGGATCCCTTG 61.117 63.158 9.90 0.01 0.00 3.61
5956 6221 4.524318 GGCGATTTCTCCGGGCGA 62.524 66.667 0.00 0.00 0.00 5.54
6005 6283 1.952296 GCAAAGTCTGGCCTATGATGG 59.048 52.381 3.32 0.00 0.00 3.51
6041 6323 2.922503 TCCTTCGTCCAGCTGCCA 60.923 61.111 8.66 0.00 0.00 4.92
6045 6327 1.303398 TCGTCTCCTTCGTCCAGCT 60.303 57.895 0.00 0.00 0.00 4.24
6067 6350 2.427753 CCGGCCCTAAGCATCCTC 59.572 66.667 0.00 0.00 46.50 3.71
6100 6383 2.642254 CCAACCCTAGGCGACACGA 61.642 63.158 2.05 0.00 0.00 4.35
6134 6417 0.539051 CAGAGAGTGATGACCCCACC 59.461 60.000 0.00 0.00 35.23 4.61
6136 6419 2.030027 AACAGAGAGTGATGACCCCA 57.970 50.000 0.00 0.00 0.00 4.96
6141 6424 4.284234 TGGATGACAAACAGAGAGTGATGA 59.716 41.667 0.00 0.00 0.00 2.92
6142 6425 4.572909 TGGATGACAAACAGAGAGTGATG 58.427 43.478 0.00 0.00 0.00 3.07
6143 6426 4.897509 TGGATGACAAACAGAGAGTGAT 57.102 40.909 0.00 0.00 0.00 3.06
6144 6427 4.897509 ATGGATGACAAACAGAGAGTGA 57.102 40.909 0.00 0.00 0.00 3.41
6145 6428 5.696822 CAAATGGATGACAAACAGAGAGTG 58.303 41.667 0.00 0.00 0.00 3.51
6146 6429 4.217118 GCAAATGGATGACAAACAGAGAGT 59.783 41.667 0.00 0.00 0.00 3.24
6151 6434 2.991190 GCTGCAAATGGATGACAAACAG 59.009 45.455 0.00 0.00 0.00 3.16
6401 6685 3.146066 TGGCATGACTAAAGACAACACC 58.854 45.455 0.00 0.00 0.00 4.16
6496 6789 1.134521 ACTGGCTCGTGTGTGAAAGAA 60.135 47.619 0.00 0.00 0.00 2.52
6508 6801 1.621301 CGACAGCTTTCACTGGCTCG 61.621 60.000 0.02 0.00 44.04 5.03
6725 7018 9.449719 AGTACATTACTTTCTTTTACCATCAGG 57.550 33.333 0.00 0.00 34.86 3.86
6814 7107 1.000274 GAGGCGCAATCAACAAAACCT 60.000 47.619 10.83 0.00 0.00 3.50
6816 7109 2.053627 CAGAGGCGCAATCAACAAAAC 58.946 47.619 10.83 0.00 0.00 2.43
6941 7234 6.673154 TCTGCTGATGTCACAATTTAGATG 57.327 37.500 0.00 0.00 0.00 2.90
6948 7241 4.001652 CTGACTTCTGCTGATGTCACAAT 58.998 43.478 27.54 2.49 45.95 2.71
6963 7256 1.618640 GCTGAACGACCGCTGACTTC 61.619 60.000 0.00 0.00 0.00 3.01
6975 7268 4.072088 GACAACGCGGGCTGAACG 62.072 66.667 12.47 0.00 0.00 3.95
7020 7313 4.758251 CGCGGTGGGCTGATGTCA 62.758 66.667 0.00 0.00 40.44 3.58
7044 7337 6.208599 TCGGGAAAGCAACAAATAAAGAGAAT 59.791 34.615 0.00 0.00 0.00 2.40
7046 7339 5.048991 GTCGGGAAAGCAACAAATAAAGAGA 60.049 40.000 0.00 0.00 0.00 3.10
7047 7340 5.048713 AGTCGGGAAAGCAACAAATAAAGAG 60.049 40.000 0.00 0.00 0.00 2.85
7048 7341 4.825085 AGTCGGGAAAGCAACAAATAAAGA 59.175 37.500 0.00 0.00 0.00 2.52
7049 7342 4.917415 CAGTCGGGAAAGCAACAAATAAAG 59.083 41.667 0.00 0.00 0.00 1.85
7050 7343 4.261825 CCAGTCGGGAAAGCAACAAATAAA 60.262 41.667 0.00 0.00 40.01 1.40
7078 7371 3.911365 TGCATCGCTTACATTTGTTTTCG 59.089 39.130 0.00 0.00 0.00 3.46
7084 7377 3.062099 ACGTACTGCATCGCTTACATTTG 59.938 43.478 0.00 0.00 0.00 2.32
7103 7398 5.643777 CCTGAGTTCAATTCCTATTCAACGT 59.356 40.000 0.00 0.00 30.89 3.99
7114 7409 3.056465 ACTCGAGGTCCTGAGTTCAATTC 60.056 47.826 18.41 0.00 42.61 2.17
7131 7426 1.001633 GGCACTTTCCCAAGTACTCGA 59.998 52.381 0.00 0.00 41.69 4.04
7132 7427 1.002087 AGGCACTTTCCCAAGTACTCG 59.998 52.381 0.00 0.00 41.69 4.18
7133 7428 2.861147 AGGCACTTTCCCAAGTACTC 57.139 50.000 0.00 0.00 41.69 2.59
7135 7430 3.412237 TGTAGGCACTTTCCCAAGTAC 57.588 47.619 0.00 0.00 41.69 2.73
7136 7431 3.497227 GGTTGTAGGCACTTTCCCAAGTA 60.497 47.826 0.00 0.00 41.69 2.24
7137 7432 2.583143 GTTGTAGGCACTTTCCCAAGT 58.417 47.619 0.00 0.00 44.72 3.16
7138 7433 1.886542 GGTTGTAGGCACTTTCCCAAG 59.113 52.381 0.00 0.00 41.75 3.61
7139 7434 1.816183 CGGTTGTAGGCACTTTCCCAA 60.816 52.381 0.00 0.00 41.75 4.12
7140 7435 0.250553 CGGTTGTAGGCACTTTCCCA 60.251 55.000 0.00 0.00 41.75 4.37
7141 7436 0.035739 TCGGTTGTAGGCACTTTCCC 59.964 55.000 0.00 0.00 41.75 3.97
7142 7437 1.737793 CATCGGTTGTAGGCACTTTCC 59.262 52.381 0.00 0.00 41.75 3.13
7143 7438 1.737793 CCATCGGTTGTAGGCACTTTC 59.262 52.381 0.00 0.00 41.75 2.62
7144 7439 1.349688 TCCATCGGTTGTAGGCACTTT 59.650 47.619 0.00 0.00 41.75 2.66
7145 7440 0.981183 TCCATCGGTTGTAGGCACTT 59.019 50.000 0.00 0.00 41.75 3.16
7146 7441 1.134401 CATCCATCGGTTGTAGGCACT 60.134 52.381 0.00 0.00 46.37 4.40
7147 7442 1.299541 CATCCATCGGTTGTAGGCAC 58.700 55.000 0.00 0.00 0.00 5.01
7148 7443 0.463654 GCATCCATCGGTTGTAGGCA 60.464 55.000 0.00 0.00 0.00 4.75
7149 7444 0.179045 AGCATCCATCGGTTGTAGGC 60.179 55.000 0.00 0.00 0.00 3.93
7150 7445 3.685139 ATAGCATCCATCGGTTGTAGG 57.315 47.619 0.00 0.00 0.00 3.18
7151 7446 3.187227 GCAATAGCATCCATCGGTTGTAG 59.813 47.826 0.00 0.00 41.58 2.74
7152 7447 3.138304 GCAATAGCATCCATCGGTTGTA 58.862 45.455 0.00 0.00 41.58 2.41
7153 7448 1.949525 GCAATAGCATCCATCGGTTGT 59.050 47.619 0.00 0.00 41.58 3.32
7154 7449 2.031420 CAGCAATAGCATCCATCGGTTG 60.031 50.000 0.00 0.00 45.49 3.77
7155 7450 2.224606 CAGCAATAGCATCCATCGGTT 58.775 47.619 0.00 0.00 45.49 4.44
7156 7451 1.141657 ACAGCAATAGCATCCATCGGT 59.858 47.619 0.00 0.00 45.49 4.69
7157 7452 1.888215 ACAGCAATAGCATCCATCGG 58.112 50.000 0.00 0.00 45.49 4.18
7158 7453 3.549423 CCAAACAGCAATAGCATCCATCG 60.549 47.826 0.00 0.00 45.49 3.84
7159 7454 3.243636 CCCAAACAGCAATAGCATCCATC 60.244 47.826 0.00 0.00 45.49 3.51
7160 7455 2.696707 CCCAAACAGCAATAGCATCCAT 59.303 45.455 0.00 0.00 45.49 3.41
7161 7456 2.101783 CCCAAACAGCAATAGCATCCA 58.898 47.619 0.00 0.00 45.49 3.41
7162 7457 2.378038 TCCCAAACAGCAATAGCATCC 58.622 47.619 0.00 0.00 45.49 3.51
7163 7458 4.176271 GTTTCCCAAACAGCAATAGCATC 58.824 43.478 0.00 0.00 45.49 3.91
7207 7502 0.463833 CCTTGTAATCTGGACCCGCC 60.464 60.000 0.00 0.00 37.10 6.13
7396 7696 9.748708 AAAATTTGTTCGAGAAGAAATTGATCA 57.251 25.926 24.52 0.00 46.65 2.92
7450 7769 1.818060 TGGAATCATCAAAAGTGCCCG 59.182 47.619 0.00 0.00 0.00 6.13
7566 7902 9.550406 AACATCATGAACATTCTTTTGAAATGT 57.450 25.926 0.00 0.00 42.31 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.