Multiple sequence alignment - TraesCS5A01G140900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G140900 chr5A 100.000 2570 0 0 1 2570 312926720 312924151 0.000000e+00 4747.0
1 TraesCS5A01G140900 chr5A 94.595 148 8 0 1 148 699319521 699319374 1.990000e-56 230.0
2 TraesCS5A01G140900 chr5A 93.333 150 8 2 1 148 585634668 585634519 1.200000e-53 220.0
3 TraesCS5A01G140900 chr5A 93.289 149 8 2 1 148 325375113 325375260 4.310000e-53 219.0
4 TraesCS5A01G140900 chr5A 92.715 151 8 3 1 149 616394621 616394472 5.570000e-52 215.0
5 TraesCS5A01G140900 chr5A 94.203 69 4 0 143 211 198011284 198011216 3.500000e-19 106.0
6 TraesCS5A01G140900 chr5B 91.696 1397 56 29 728 2097 262840676 262839313 0.000000e+00 1882.0
7 TraesCS5A01G140900 chr5B 89.353 479 33 10 2100 2570 262828117 262827649 1.020000e-163 586.0
8 TraesCS5A01G140900 chr5B 91.824 159 11 1 1 157 276947193 276947035 1.200000e-53 220.0
9 TraesCS5A01G140900 chr5B 88.966 145 12 2 426 570 262854800 262854660 2.630000e-40 176.0
10 TraesCS5A01G140900 chr5B 87.179 117 10 4 288 404 401067337 401067448 7.460000e-26 128.0
11 TraesCS5A01G140900 chr5B 95.238 42 2 0 681 722 262840747 262840706 1.650000e-07 67.6
12 TraesCS5A01G140900 chr5D 88.577 1532 79 30 625 2104 240841193 240842680 0.000000e+00 1772.0
13 TraesCS5A01G140900 chr5D 86.242 487 25 12 2100 2570 240844829 240845289 8.260000e-135 490.0
14 TraesCS5A01G140900 chr5D 93.407 91 6 0 488 578 240835973 240836063 4.460000e-28 135.0
15 TraesCS5A01G140900 chr5D 97.917 48 0 1 561 608 240836077 240836123 5.890000e-12 82.4
16 TraesCS5A01G140900 chr3A 94.000 150 7 2 1 150 734478213 734478066 2.570000e-55 226.0
17 TraesCS5A01G140900 chr2A 92.715 151 11 0 1 151 100916079 100915929 4.310000e-53 219.0
18 TraesCS5A01G140900 chr7D 91.139 158 11 3 1 156 98664472 98664628 7.200000e-51 211.0
19 TraesCS5A01G140900 chr2D 88.824 170 15 4 1 168 6945941 6945774 3.350000e-49 206.0
20 TraesCS5A01G140900 chr2D 86.525 141 18 1 257 396 600565451 600565591 1.230000e-33 154.0
21 TraesCS5A01G140900 chr2D 94.203 69 4 0 143 211 347265478 347265546 3.500000e-19 106.0
22 TraesCS5A01G140900 chr2D 92.754 69 5 0 143 211 493999691 493999623 1.630000e-17 100.0
23 TraesCS5A01G140900 chr1A 84.615 182 26 2 216 396 442477798 442477978 2.030000e-41 180.0
24 TraesCS5A01G140900 chr1A 92.754 69 5 0 143 211 103990230 103990162 1.630000e-17 100.0
25 TraesCS5A01G140900 chr6D 84.530 181 27 1 216 395 395383237 395383417 7.310000e-41 178.0
26 TraesCS5A01G140900 chr6D 87.023 131 14 3 268 396 11193310 11193181 7.410000e-31 145.0
27 TraesCS5A01G140900 chr6D 88.596 114 12 1 271 383 221221125 221221012 1.240000e-28 137.0
28 TraesCS5A01G140900 chr6D 86.885 122 14 2 270 390 124835765 124835645 4.460000e-28 135.0
29 TraesCS5A01G140900 chr1B 85.185 162 21 3 1 160 188916853 188917013 2.050000e-36 163.0
30 TraesCS5A01G140900 chr1B 82.645 121 21 0 37 157 603277491 603277611 9.720000e-20 108.0
31 TraesCS5A01G140900 chr1B 94.203 69 4 0 143 211 297780127 297780059 3.500000e-19 106.0
32 TraesCS5A01G140900 chrUn 81.667 180 23 6 257 427 30455619 30455441 9.590000e-30 141.0
33 TraesCS5A01G140900 chr2B 84.286 140 21 1 257 395 796178963 796178824 4.460000e-28 135.0
34 TraesCS5A01G140900 chr6A 90.722 97 8 1 271 366 262053960 262053864 7.460000e-26 128.0
35 TraesCS5A01G140900 chr7A 94.203 69 4 0 143 211 317267307 317267375 3.500000e-19 106.0
36 TraesCS5A01G140900 chr7B 92.754 69 5 0 143 211 231986780 231986848 1.630000e-17 100.0
37 TraesCS5A01G140900 chr6B 92.754 69 5 0 143 211 224855545 224855613 1.630000e-17 100.0
38 TraesCS5A01G140900 chr6B 92.754 69 5 0 143 211 392837268 392837336 1.630000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G140900 chr5A 312924151 312926720 2569 True 4747.0 4747 100.0000 1 2570 1 chr5A.!!$R2 2569
1 TraesCS5A01G140900 chr5B 262839313 262840747 1434 True 974.8 1882 93.4670 681 2097 2 chr5B.!!$R4 1416
2 TraesCS5A01G140900 chr5D 240841193 240845289 4096 False 1131.0 1772 87.4095 625 2570 2 chr5D.!!$F2 1945

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
500 501 0.242825 CGCACTCACTCCCGTTCTAA 59.757 55.0 0.0 0.0 0.0 2.1 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2256 4503 0.03716 ATGACTGTGTCCAGCATGCA 59.963 50.0 21.98 0.0 42.81 3.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
127 128 9.617523 TGACTTTGATCAAATCTTATATGCAGA 57.382 29.630 20.76 0.00 0.00 4.26
128 129 9.875675 GACTTTGATCAAATCTTATATGCAGAC 57.124 33.333 20.76 2.27 0.00 3.51
129 130 9.624373 ACTTTGATCAAATCTTATATGCAGACT 57.376 29.630 20.76 0.00 0.00 3.24
153 154 4.741928 AAAAATGGAGGGAGTACAAGGT 57.258 40.909 0.00 0.00 0.00 3.50
154 155 5.853572 AAAAATGGAGGGAGTACAAGGTA 57.146 39.130 0.00 0.00 0.00 3.08
155 156 5.853572 AAAATGGAGGGAGTACAAGGTAA 57.146 39.130 0.00 0.00 0.00 2.85
156 157 5.437191 AAATGGAGGGAGTACAAGGTAAG 57.563 43.478 0.00 0.00 0.00 2.34
157 158 2.829023 TGGAGGGAGTACAAGGTAAGG 58.171 52.381 0.00 0.00 0.00 2.69
158 159 2.113052 TGGAGGGAGTACAAGGTAAGGT 59.887 50.000 0.00 0.00 0.00 3.50
159 160 3.337605 TGGAGGGAGTACAAGGTAAGGTA 59.662 47.826 0.00 0.00 0.00 3.08
160 161 3.959449 GGAGGGAGTACAAGGTAAGGTAG 59.041 52.174 0.00 0.00 0.00 3.18
161 162 4.325658 GGAGGGAGTACAAGGTAAGGTAGA 60.326 50.000 0.00 0.00 0.00 2.59
162 163 5.267587 GAGGGAGTACAAGGTAAGGTAGAA 58.732 45.833 0.00 0.00 0.00 2.10
163 164 5.851418 AGGGAGTACAAGGTAAGGTAGAAT 58.149 41.667 0.00 0.00 0.00 2.40
164 165 6.989894 AGGGAGTACAAGGTAAGGTAGAATA 58.010 40.000 0.00 0.00 0.00 1.75
165 166 7.425003 AGGGAGTACAAGGTAAGGTAGAATAA 58.575 38.462 0.00 0.00 0.00 1.40
166 167 7.902941 AGGGAGTACAAGGTAAGGTAGAATAAA 59.097 37.037 0.00 0.00 0.00 1.40
167 168 8.712103 GGGAGTACAAGGTAAGGTAGAATAAAT 58.288 37.037 0.00 0.00 0.00 1.40
168 169 9.761504 GGAGTACAAGGTAAGGTAGAATAAATC 57.238 37.037 0.00 0.00 0.00 2.17
169 170 9.761504 GAGTACAAGGTAAGGTAGAATAAATCC 57.238 37.037 0.00 0.00 0.00 3.01
170 171 8.712103 AGTACAAGGTAAGGTAGAATAAATCCC 58.288 37.037 0.00 0.00 0.00 3.85
171 172 7.519347 ACAAGGTAAGGTAGAATAAATCCCA 57.481 36.000 0.00 0.00 0.00 4.37
172 173 7.344134 ACAAGGTAAGGTAGAATAAATCCCAC 58.656 38.462 0.00 0.00 0.00 4.61
173 174 6.170846 AGGTAAGGTAGAATAAATCCCACG 57.829 41.667 0.00 0.00 0.00 4.94
174 175 4.753610 GGTAAGGTAGAATAAATCCCACGC 59.246 45.833 0.00 0.00 0.00 5.34
175 176 4.772886 AAGGTAGAATAAATCCCACGCT 57.227 40.909 0.00 0.00 0.00 5.07
176 177 5.881923 AAGGTAGAATAAATCCCACGCTA 57.118 39.130 0.00 0.00 0.00 4.26
177 178 6.435292 AAGGTAGAATAAATCCCACGCTAT 57.565 37.500 0.00 0.00 0.00 2.97
178 179 6.038997 AGGTAGAATAAATCCCACGCTATC 57.961 41.667 0.00 0.00 0.00 2.08
179 180 5.046520 AGGTAGAATAAATCCCACGCTATCC 60.047 44.000 0.00 0.00 0.00 2.59
180 181 5.046520 GGTAGAATAAATCCCACGCTATCCT 60.047 44.000 0.00 0.00 0.00 3.24
181 182 6.154021 GGTAGAATAAATCCCACGCTATCCTA 59.846 42.308 0.00 0.00 0.00 2.94
182 183 6.875972 AGAATAAATCCCACGCTATCCTAT 57.124 37.500 0.00 0.00 0.00 2.57
183 184 7.973048 AGAATAAATCCCACGCTATCCTATA 57.027 36.000 0.00 0.00 0.00 1.31
184 185 8.554490 AGAATAAATCCCACGCTATCCTATAT 57.446 34.615 0.00 0.00 0.00 0.86
185 186 8.993424 AGAATAAATCCCACGCTATCCTATATT 58.007 33.333 0.00 0.00 0.00 1.28
186 187 9.614792 GAATAAATCCCACGCTATCCTATATTT 57.385 33.333 0.00 0.00 0.00 1.40
187 188 9.614792 AATAAATCCCACGCTATCCTATATTTC 57.385 33.333 0.00 0.00 0.00 2.17
188 189 5.615925 ATCCCACGCTATCCTATATTTCC 57.384 43.478 0.00 0.00 0.00 3.13
189 190 4.684724 TCCCACGCTATCCTATATTTCCT 58.315 43.478 0.00 0.00 0.00 3.36
190 191 5.834460 TCCCACGCTATCCTATATTTCCTA 58.166 41.667 0.00 0.00 0.00 2.94
191 192 6.258354 TCCCACGCTATCCTATATTTCCTAA 58.742 40.000 0.00 0.00 0.00 2.69
192 193 6.727231 TCCCACGCTATCCTATATTTCCTAAA 59.273 38.462 0.00 0.00 0.00 1.85
193 194 7.402071 TCCCACGCTATCCTATATTTCCTAAAT 59.598 37.037 0.00 0.00 34.90 1.40
194 195 8.701895 CCCACGCTATCCTATATTTCCTAAATA 58.298 37.037 0.00 0.00 37.71 1.40
292 293 9.768662 AGTTTTACATTTTCATTTGCATCTTCT 57.231 25.926 0.00 0.00 0.00 2.85
298 299 9.932207 ACATTTTCATTTGCATCTTCTATTGAA 57.068 25.926 0.00 0.00 0.00 2.69
319 320 8.547967 TTGAAGTTGCTCTTTTATATCTTCGT 57.452 30.769 0.00 0.00 36.40 3.85
320 321 8.547967 TGAAGTTGCTCTTTTATATCTTCGTT 57.452 30.769 0.00 0.00 36.40 3.85
321 322 8.999431 TGAAGTTGCTCTTTTATATCTTCGTTT 58.001 29.630 0.00 0.00 36.40 3.60
322 323 9.827411 GAAGTTGCTCTTTTATATCTTCGTTTT 57.173 29.630 0.00 0.00 36.40 2.43
323 324 9.612620 AAGTTGCTCTTTTATATCTTCGTTTTG 57.387 29.630 0.00 0.00 31.57 2.44
324 325 8.784043 AGTTGCTCTTTTATATCTTCGTTTTGT 58.216 29.630 0.00 0.00 0.00 2.83
336 337 6.480524 TCTTCGTTTTGTATCATCTGTTGG 57.519 37.500 0.00 0.00 0.00 3.77
337 338 6.227522 TCTTCGTTTTGTATCATCTGTTGGA 58.772 36.000 0.00 0.00 0.00 3.53
338 339 6.368791 TCTTCGTTTTGTATCATCTGTTGGAG 59.631 38.462 0.00 0.00 0.00 3.86
339 340 5.547465 TCGTTTTGTATCATCTGTTGGAGT 58.453 37.500 0.00 0.00 0.00 3.85
340 341 5.995282 TCGTTTTGTATCATCTGTTGGAGTT 59.005 36.000 0.00 0.00 0.00 3.01
341 342 6.073276 TCGTTTTGTATCATCTGTTGGAGTTG 60.073 38.462 0.00 0.00 0.00 3.16
342 343 6.381801 GTTTTGTATCATCTGTTGGAGTTGG 58.618 40.000 0.00 0.00 0.00 3.77
343 344 3.609853 TGTATCATCTGTTGGAGTTGGC 58.390 45.455 0.00 0.00 0.00 4.52
344 345 2.885135 ATCATCTGTTGGAGTTGGCA 57.115 45.000 0.00 0.00 0.00 4.92
345 346 1.896220 TCATCTGTTGGAGTTGGCAC 58.104 50.000 0.00 0.00 0.00 5.01
346 347 1.421268 TCATCTGTTGGAGTTGGCACT 59.579 47.619 0.00 0.00 35.17 4.40
347 348 2.158623 TCATCTGTTGGAGTTGGCACTT 60.159 45.455 0.00 0.00 31.22 3.16
348 349 2.435372 TCTGTTGGAGTTGGCACTTT 57.565 45.000 0.00 0.00 31.22 2.66
349 350 2.733956 TCTGTTGGAGTTGGCACTTTT 58.266 42.857 0.00 0.00 31.22 2.27
350 351 3.096092 TCTGTTGGAGTTGGCACTTTTT 58.904 40.909 0.00 0.00 31.22 1.94
418 419 8.906867 TCTCTAAAATTGCATCTTTCTATTGGG 58.093 33.333 0.00 0.00 0.00 4.12
419 420 8.010733 TCTAAAATTGCATCTTTCTATTGGGG 57.989 34.615 0.00 0.00 0.00 4.96
420 421 6.872585 AAAATTGCATCTTTCTATTGGGGA 57.127 33.333 0.00 0.00 0.00 4.81
421 422 7.441903 AAAATTGCATCTTTCTATTGGGGAT 57.558 32.000 0.00 0.00 0.00 3.85
422 423 6.415206 AATTGCATCTTTCTATTGGGGATG 57.585 37.500 0.00 0.00 37.44 3.51
423 424 4.524802 TGCATCTTTCTATTGGGGATGT 57.475 40.909 0.00 0.00 36.94 3.06
424 425 4.870636 TGCATCTTTCTATTGGGGATGTT 58.129 39.130 0.00 0.00 36.94 2.71
425 426 4.889409 TGCATCTTTCTATTGGGGATGTTC 59.111 41.667 0.00 0.00 36.94 3.18
426 427 5.136105 GCATCTTTCTATTGGGGATGTTCT 58.864 41.667 0.00 0.00 36.94 3.01
427 428 6.126507 TGCATCTTTCTATTGGGGATGTTCTA 60.127 38.462 0.00 0.00 36.94 2.10
428 429 6.944862 GCATCTTTCTATTGGGGATGTTCTAT 59.055 38.462 0.00 0.00 36.94 1.98
429 430 8.103305 GCATCTTTCTATTGGGGATGTTCTATA 58.897 37.037 0.00 0.00 36.94 1.31
432 433 9.447279 TCTTTCTATTGGGGATGTTCTATAAGA 57.553 33.333 0.00 0.00 0.00 2.10
433 434 9.495572 CTTTCTATTGGGGATGTTCTATAAGAC 57.504 37.037 0.00 0.00 0.00 3.01
434 435 8.561536 TTCTATTGGGGATGTTCTATAAGACA 57.438 34.615 0.00 0.00 0.00 3.41
435 436 8.742125 TCTATTGGGGATGTTCTATAAGACAT 57.258 34.615 1.39 1.39 0.00 3.06
436 437 9.170890 TCTATTGGGGATGTTCTATAAGACATT 57.829 33.333 3.05 0.00 0.00 2.71
437 438 9.799106 CTATTGGGGATGTTCTATAAGACATTT 57.201 33.333 3.05 0.00 0.00 2.32
440 441 9.627123 TTGGGGATGTTCTATAAGACATTTTAG 57.373 33.333 3.05 0.00 0.00 1.85
441 442 8.217799 TGGGGATGTTCTATAAGACATTTTAGG 58.782 37.037 3.05 0.00 0.00 2.69
442 443 7.665974 GGGGATGTTCTATAAGACATTTTAGGG 59.334 40.741 3.05 0.00 0.00 3.53
443 444 7.175119 GGGATGTTCTATAAGACATTTTAGGGC 59.825 40.741 3.05 0.00 0.00 5.19
444 445 7.719633 GGATGTTCTATAAGACATTTTAGGGCA 59.280 37.037 3.05 0.00 0.00 5.36
445 446 8.682936 ATGTTCTATAAGACATTTTAGGGCAG 57.317 34.615 0.00 0.00 0.00 4.85
446 447 7.630082 TGTTCTATAAGACATTTTAGGGCAGT 58.370 34.615 0.00 0.00 0.00 4.40
447 448 8.107095 TGTTCTATAAGACATTTTAGGGCAGTT 58.893 33.333 0.00 0.00 0.00 3.16
448 449 9.609346 GTTCTATAAGACATTTTAGGGCAGTTA 57.391 33.333 0.00 0.00 0.00 2.24
454 455 8.879427 AAGACATTTTAGGGCAGTTAATTACT 57.121 30.769 0.00 0.00 37.68 2.24
455 456 8.507524 AGACATTTTAGGGCAGTTAATTACTC 57.492 34.615 0.00 0.00 33.85 2.59
456 457 8.329502 AGACATTTTAGGGCAGTTAATTACTCT 58.670 33.333 0.00 0.00 33.85 3.24
457 458 9.609346 GACATTTTAGGGCAGTTAATTACTCTA 57.391 33.333 0.00 0.00 33.85 2.43
458 459 9.614792 ACATTTTAGGGCAGTTAATTACTCTAG 57.385 33.333 0.00 0.00 33.85 2.43
459 460 9.057089 CATTTTAGGGCAGTTAATTACTCTAGG 57.943 37.037 0.00 0.00 33.85 3.02
460 461 7.744678 TTTAGGGCAGTTAATTACTCTAGGT 57.255 36.000 0.00 0.00 33.85 3.08
461 462 8.843308 TTTAGGGCAGTTAATTACTCTAGGTA 57.157 34.615 0.00 0.00 33.85 3.08
462 463 9.443365 TTTAGGGCAGTTAATTACTCTAGGTAT 57.557 33.333 0.00 0.00 33.85 2.73
463 464 7.932683 AGGGCAGTTAATTACTCTAGGTATT 57.067 36.000 0.00 0.00 33.85 1.89
465 466 8.868103 AGGGCAGTTAATTACTCTAGGTATTAC 58.132 37.037 0.00 0.00 33.85 1.89
466 467 8.093307 GGGCAGTTAATTACTCTAGGTATTACC 58.907 40.741 4.57 4.57 34.66 2.85
467 468 7.811713 GGCAGTTAATTACTCTAGGTATTACCG 59.188 40.741 7.21 0.00 38.06 4.02
468 469 7.328005 GCAGTTAATTACTCTAGGTATTACCGC 59.672 40.741 7.21 0.00 38.06 5.68
469 470 8.355169 CAGTTAATTACTCTAGGTATTACCGCA 58.645 37.037 7.21 0.00 38.06 5.69
470 471 8.574737 AGTTAATTACTCTAGGTATTACCGCAG 58.425 37.037 7.21 8.78 36.28 5.18
471 472 4.843220 TTACTCTAGGTATTACCGCAGC 57.157 45.455 7.21 0.00 44.90 5.25
472 473 1.962100 ACTCTAGGTATTACCGCAGCC 59.038 52.381 7.21 0.00 44.90 4.85
473 474 0.956633 TCTAGGTATTACCGCAGCCG 59.043 55.000 7.21 0.00 44.90 5.52
490 491 2.982130 GGATGGACCGCACTCACT 59.018 61.111 0.00 0.00 0.00 3.41
491 492 1.153549 GGATGGACCGCACTCACTC 60.154 63.158 0.00 0.00 0.00 3.51
492 493 1.153549 GATGGACCGCACTCACTCC 60.154 63.158 0.00 0.00 0.00 3.85
493 494 2.579684 GATGGACCGCACTCACTCCC 62.580 65.000 0.00 0.00 0.00 4.30
494 495 4.436998 GGACCGCACTCACTCCCG 62.437 72.222 0.00 0.00 0.00 5.14
495 496 3.681835 GACCGCACTCACTCCCGT 61.682 66.667 0.00 0.00 0.00 5.28
496 497 3.222354 GACCGCACTCACTCCCGTT 62.222 63.158 0.00 0.00 0.00 4.44
497 498 2.432628 CCGCACTCACTCCCGTTC 60.433 66.667 0.00 0.00 0.00 3.95
498 499 2.651361 CGCACTCACTCCCGTTCT 59.349 61.111 0.00 0.00 0.00 3.01
499 500 1.592400 CCGCACTCACTCCCGTTCTA 61.592 60.000 0.00 0.00 0.00 2.10
500 501 0.242825 CGCACTCACTCCCGTTCTAA 59.757 55.000 0.00 0.00 0.00 2.10
501 502 1.336517 CGCACTCACTCCCGTTCTAAA 60.337 52.381 0.00 0.00 0.00 1.85
502 503 2.674177 CGCACTCACTCCCGTTCTAAAT 60.674 50.000 0.00 0.00 0.00 1.40
503 504 2.930682 GCACTCACTCCCGTTCTAAATC 59.069 50.000 0.00 0.00 0.00 2.17
504 505 3.616560 GCACTCACTCCCGTTCTAAATCA 60.617 47.826 0.00 0.00 0.00 2.57
505 506 4.566004 CACTCACTCCCGTTCTAAATCAA 58.434 43.478 0.00 0.00 0.00 2.57
506 507 5.178797 CACTCACTCCCGTTCTAAATCAAT 58.821 41.667 0.00 0.00 0.00 2.57
507 508 5.292101 CACTCACTCCCGTTCTAAATCAATC 59.708 44.000 0.00 0.00 0.00 2.67
508 509 5.187967 ACTCACTCCCGTTCTAAATCAATCT 59.812 40.000 0.00 0.00 0.00 2.40
509 510 6.049955 TCACTCCCGTTCTAAATCAATCTT 57.950 37.500 0.00 0.00 0.00 2.40
510 511 6.472887 TCACTCCCGTTCTAAATCAATCTTT 58.527 36.000 0.00 0.00 0.00 2.52
511 512 6.371548 TCACTCCCGTTCTAAATCAATCTTTG 59.628 38.462 0.00 0.00 0.00 2.77
512 513 6.371548 CACTCCCGTTCTAAATCAATCTTTGA 59.628 38.462 0.00 0.00 45.01 2.69
513 514 6.940298 ACTCCCGTTCTAAATCAATCTTTGAA 59.060 34.615 0.00 0.00 43.95 2.69
514 515 7.447238 ACTCCCGTTCTAAATCAATCTTTGAAA 59.553 33.333 0.00 0.00 43.95 2.69
515 516 8.172352 TCCCGTTCTAAATCAATCTTTGAAAA 57.828 30.769 0.00 0.00 43.95 2.29
516 517 8.802267 TCCCGTTCTAAATCAATCTTTGAAAAT 58.198 29.630 0.00 0.00 43.95 1.82
517 518 9.423061 CCCGTTCTAAATCAATCTTTGAAAATT 57.577 29.630 0.00 0.00 43.95 1.82
535 536 9.829507 TTGAAAATTGATGGATAAAGTTGTTGT 57.170 25.926 0.00 0.00 0.00 3.32
539 540 9.787532 AAATTGATGGATAAAGTTGTTGTATCG 57.212 29.630 0.00 0.00 0.00 2.92
540 541 7.915293 TTGATGGATAAAGTTGTTGTATCGT 57.085 32.000 0.00 0.00 0.00 3.73
541 542 7.302350 TGATGGATAAAGTTGTTGTATCGTG 57.698 36.000 0.00 0.00 0.00 4.35
542 543 5.539582 TGGATAAAGTTGTTGTATCGTGC 57.460 39.130 0.00 0.00 0.00 5.34
543 544 4.998033 TGGATAAAGTTGTTGTATCGTGCA 59.002 37.500 0.00 0.00 0.00 4.57
544 545 5.106869 TGGATAAAGTTGTTGTATCGTGCAC 60.107 40.000 6.82 6.82 0.00 4.57
545 546 5.106869 GGATAAAGTTGTTGTATCGTGCACA 60.107 40.000 18.64 4.45 0.00 4.57
546 547 3.602390 AAGTTGTTGTATCGTGCACAC 57.398 42.857 18.64 8.30 0.00 3.82
547 548 2.556257 AGTTGTTGTATCGTGCACACA 58.444 42.857 18.64 11.11 0.00 3.72
548 549 2.939756 AGTTGTTGTATCGTGCACACAA 59.060 40.909 18.64 16.62 0.00 3.33
552 553 2.232756 TGTATCGTGCACACAACACT 57.767 45.000 18.64 0.00 35.84 3.55
553 554 2.556257 TGTATCGTGCACACAACACTT 58.444 42.857 18.64 0.00 35.84 3.16
554 555 2.286563 TGTATCGTGCACACAACACTTG 59.713 45.455 18.64 0.00 35.84 3.16
555 556 1.378531 ATCGTGCACACAACACTTGT 58.621 45.000 18.64 0.00 46.75 3.16
556 557 1.160989 TCGTGCACACAACACTTGTT 58.839 45.000 18.64 0.00 43.23 2.83
557 558 2.347731 TCGTGCACACAACACTTGTTA 58.652 42.857 18.64 0.00 43.23 2.41
558 559 2.939756 TCGTGCACACAACACTTGTTAT 59.060 40.909 18.64 0.00 43.23 1.89
559 560 3.001838 TCGTGCACACAACACTTGTTATC 59.998 43.478 18.64 0.00 43.23 1.75
560 561 3.242576 CGTGCACACAACACTTGTTATCA 60.243 43.478 18.64 0.00 43.23 2.15
561 562 4.554526 CGTGCACACAACACTTGTTATCAT 60.555 41.667 18.64 0.00 43.23 2.45
562 563 4.676471 GTGCACACAACACTTGTTATCATG 59.324 41.667 13.17 0.00 43.23 3.07
563 564 4.229096 GCACACAACACTTGTTATCATGG 58.771 43.478 0.00 0.00 43.23 3.66
564 565 4.023279 GCACACAACACTTGTTATCATGGA 60.023 41.667 0.00 0.00 43.23 3.41
565 566 5.507149 GCACACAACACTTGTTATCATGGAA 60.507 40.000 0.00 0.00 43.23 3.53
566 567 6.502652 CACACAACACTTGTTATCATGGAAA 58.497 36.000 0.00 0.00 43.23 3.13
567 568 6.417635 CACACAACACTTGTTATCATGGAAAC 59.582 38.462 0.00 0.00 43.23 2.78
568 569 6.321181 ACACAACACTTGTTATCATGGAAACT 59.679 34.615 10.95 0.00 43.23 2.66
569 570 7.147915 ACACAACACTTGTTATCATGGAAACTT 60.148 33.333 10.95 0.00 43.23 2.66
570 571 7.167968 CACAACACTTGTTATCATGGAAACTTG 59.832 37.037 10.95 9.15 43.23 3.16
571 572 7.068103 ACAACACTTGTTATCATGGAAACTTGA 59.932 33.333 10.95 0.00 43.87 3.02
580 581 5.107109 TCATGGAAACTTGATCAACAACG 57.893 39.130 3.38 0.00 39.36 4.10
581 582 3.980646 TGGAAACTTGATCAACAACGG 57.019 42.857 3.38 0.00 34.56 4.44
582 583 2.621055 TGGAAACTTGATCAACAACGGG 59.379 45.455 3.38 0.00 34.56 5.28
583 584 2.882137 GGAAACTTGATCAACAACGGGA 59.118 45.455 3.38 0.00 34.56 5.14
584 585 3.316868 GGAAACTTGATCAACAACGGGAA 59.683 43.478 3.38 0.00 34.56 3.97
585 586 4.537015 GAAACTTGATCAACAACGGGAAG 58.463 43.478 3.38 0.00 34.56 3.46
586 587 3.485463 ACTTGATCAACAACGGGAAGA 57.515 42.857 3.38 0.00 34.56 2.87
587 588 4.021102 ACTTGATCAACAACGGGAAGAT 57.979 40.909 3.38 0.00 34.56 2.40
588 589 5.160607 ACTTGATCAACAACGGGAAGATA 57.839 39.130 3.38 0.00 34.56 1.98
589 590 5.745227 ACTTGATCAACAACGGGAAGATAT 58.255 37.500 3.38 0.00 34.56 1.63
590 591 5.817816 ACTTGATCAACAACGGGAAGATATC 59.182 40.000 3.38 0.00 34.56 1.63
591 592 5.351948 TGATCAACAACGGGAAGATATCA 57.648 39.130 5.32 0.00 0.00 2.15
592 593 5.739959 TGATCAACAACGGGAAGATATCAA 58.260 37.500 5.32 0.00 0.00 2.57
593 594 5.584649 TGATCAACAACGGGAAGATATCAAC 59.415 40.000 5.32 0.00 0.00 3.18
594 595 4.900684 TCAACAACGGGAAGATATCAACA 58.099 39.130 5.32 0.00 0.00 3.33
595 596 5.496556 TCAACAACGGGAAGATATCAACAT 58.503 37.500 5.32 0.00 0.00 2.71
596 597 5.584649 TCAACAACGGGAAGATATCAACATC 59.415 40.000 5.32 0.00 0.00 3.06
597 598 4.451900 ACAACGGGAAGATATCAACATCC 58.548 43.478 5.32 6.87 0.00 3.51
598 599 3.771577 ACGGGAAGATATCAACATCCC 57.228 47.619 18.76 18.76 45.19 3.85
600 601 3.771577 GGGAAGATATCAACATCCCGT 57.228 47.619 15.75 0.00 40.33 5.28
601 602 4.086706 GGGAAGATATCAACATCCCGTT 57.913 45.455 15.75 0.00 40.33 4.44
602 603 5.223449 GGGAAGATATCAACATCCCGTTA 57.777 43.478 15.75 0.00 40.33 3.18
603 604 5.805728 GGGAAGATATCAACATCCCGTTAT 58.194 41.667 15.75 0.00 40.33 1.89
604 605 5.875359 GGGAAGATATCAACATCCCGTTATC 59.125 44.000 15.75 0.00 40.33 1.75
605 606 6.464222 GGAAGATATCAACATCCCGTTATCA 58.536 40.000 5.32 0.00 35.52 2.15
606 607 7.106239 GGAAGATATCAACATCCCGTTATCAT 58.894 38.462 5.32 0.00 35.52 2.45
607 608 7.065085 GGAAGATATCAACATCCCGTTATCATG 59.935 40.741 5.32 0.00 35.52 3.07
608 609 7.009179 AGATATCAACATCCCGTTATCATGT 57.991 36.000 5.32 0.00 35.52 3.21
609 610 8.134202 AGATATCAACATCCCGTTATCATGTA 57.866 34.615 5.32 0.00 35.52 2.29
610 611 8.035394 AGATATCAACATCCCGTTATCATGTAC 58.965 37.037 5.32 0.00 35.52 2.90
611 612 5.607939 TCAACATCCCGTTATCATGTACT 57.392 39.130 0.00 0.00 35.52 2.73
612 613 5.356426 TCAACATCCCGTTATCATGTACTG 58.644 41.667 0.00 0.00 35.52 2.74
613 614 5.105106 TCAACATCCCGTTATCATGTACTGT 60.105 40.000 0.00 0.00 35.52 3.55
614 615 6.097129 TCAACATCCCGTTATCATGTACTGTA 59.903 38.462 0.00 0.00 35.52 2.74
615 616 5.839621 ACATCCCGTTATCATGTACTGTAC 58.160 41.667 10.98 10.98 0.00 2.90
616 617 5.597182 ACATCCCGTTATCATGTACTGTACT 59.403 40.000 17.98 1.53 0.00 2.73
617 618 6.774170 ACATCCCGTTATCATGTACTGTACTA 59.226 38.462 17.98 6.12 0.00 1.82
618 619 7.450634 ACATCCCGTTATCATGTACTGTACTAT 59.549 37.037 17.98 11.38 0.00 2.12
619 620 7.210718 TCCCGTTATCATGTACTGTACTATG 57.789 40.000 17.98 17.44 0.00 2.23
620 621 6.774170 TCCCGTTATCATGTACTGTACTATGT 59.226 38.462 17.98 12.05 0.00 2.29
621 622 7.938490 TCCCGTTATCATGTACTGTACTATGTA 59.062 37.037 17.98 11.35 0.00 2.29
622 623 8.235226 CCCGTTATCATGTACTGTACTATGTAG 58.765 40.741 17.98 10.46 0.00 2.74
623 624 8.781196 CCGTTATCATGTACTGTACTATGTAGT 58.219 37.037 17.98 11.99 40.24 2.73
639 640 7.039882 ACTATGTAGTACCTCGTTCATTTTGG 58.960 38.462 0.00 0.00 34.13 3.28
640 641 5.471556 TGTAGTACCTCGTTCATTTTGGA 57.528 39.130 0.00 0.00 0.00 3.53
641 642 6.045072 TGTAGTACCTCGTTCATTTTGGAT 57.955 37.500 0.00 0.00 0.00 3.41
642 643 7.172868 TGTAGTACCTCGTTCATTTTGGATA 57.827 36.000 0.00 0.00 0.00 2.59
644 645 7.924412 TGTAGTACCTCGTTCATTTTGGATATC 59.076 37.037 0.00 0.00 0.00 1.63
645 646 7.125792 AGTACCTCGTTCATTTTGGATATCT 57.874 36.000 2.05 0.00 0.00 1.98
646 647 7.565680 AGTACCTCGTTCATTTTGGATATCTT 58.434 34.615 2.05 0.00 0.00 2.40
717 718 3.256383 CACCATCAAGGCATCAACTCAAA 59.744 43.478 0.00 0.00 43.14 2.69
746 771 4.541482 GCGTCGCCGGTCATCGTA 62.541 66.667 5.75 0.00 37.11 3.43
762 787 1.065709 TCGTAAAGAACCCCATGCCTC 60.066 52.381 0.00 0.00 0.00 4.70
803 828 1.620819 ACAGAGACAGAAACCGCAGAT 59.379 47.619 0.00 0.00 0.00 2.90
900 929 2.656002 CCACGTCATCCTTCCTCTCTA 58.344 52.381 0.00 0.00 0.00 2.43
907 936 7.773224 CACGTCATCCTTCCTCTCTATATATCT 59.227 40.741 0.00 0.00 0.00 1.98
919 948 7.381789 TCTCTATATATCTATCCTGCGACCT 57.618 40.000 0.00 0.00 0.00 3.85
978 1008 0.741221 AGCAAACGCAGCCTAGCTAC 60.741 55.000 0.00 0.00 36.40 3.58
998 1028 0.786581 CTCTCACATCACACACGCAC 59.213 55.000 0.00 0.00 0.00 5.34
1123 1153 1.134580 CCTACGACTACGAGGGTCTCA 60.135 57.143 0.00 0.00 42.66 3.27
1578 1632 0.905357 ATCTTCTCTGAACCCACCCG 59.095 55.000 0.00 0.00 0.00 5.28
1579 1633 1.376037 CTTCTCTGAACCCACCCGC 60.376 63.158 0.00 0.00 0.00 6.13
1580 1634 1.831652 CTTCTCTGAACCCACCCGCT 61.832 60.000 0.00 0.00 0.00 5.52
1581 1635 0.543410 TTCTCTGAACCCACCCGCTA 60.543 55.000 0.00 0.00 0.00 4.26
1582 1636 0.325296 TCTCTGAACCCACCCGCTAT 60.325 55.000 0.00 0.00 0.00 2.97
1583 1637 0.179073 CTCTGAACCCACCCGCTATG 60.179 60.000 0.00 0.00 0.00 2.23
1584 1638 1.819632 CTGAACCCACCCGCTATGC 60.820 63.158 0.00 0.00 0.00 3.14
1585 1639 2.516225 GAACCCACCCGCTATGCC 60.516 66.667 0.00 0.00 0.00 4.40
1586 1640 4.123545 AACCCACCCGCTATGCCC 62.124 66.667 0.00 0.00 0.00 5.36
1594 1648 2.800541 CCGCTATGCCCTCTCTGCA 61.801 63.158 0.00 0.00 43.97 4.41
1613 1667 2.358582 GCACACATATGCATGGTGCTTA 59.641 45.455 26.43 3.50 45.75 3.09
1643 1697 5.480422 TCTGGTTGTGACTAGAGCTTGATTA 59.520 40.000 0.00 0.00 38.32 1.75
1677 1738 8.114290 CCATATATGTGTTCGTCTTGTTGTTAC 58.886 37.037 11.73 0.00 0.00 2.50
1718 1779 7.106890 TCCGTTTATGTTGTGATTTCCTCATA 58.893 34.615 0.00 0.00 35.97 2.15
1720 1781 7.148323 CCGTTTATGTTGTGATTTCCTCATACA 60.148 37.037 0.00 0.00 36.40 2.29
1721 1782 8.397906 CGTTTATGTTGTGATTTCCTCATACAT 58.602 33.333 0.00 0.00 41.25 2.29
1872 1948 4.080299 ACCAACCATATTCTCTTCTGGTCC 60.080 45.833 0.00 0.00 41.06 4.46
1897 1973 5.694910 GGTCAAGATCAACTGTCTTTCGTTA 59.305 40.000 0.00 0.00 33.82 3.18
1968 2044 6.478344 CGCCAAAGCAGCCATTAATTATAAAA 59.522 34.615 0.00 0.00 39.83 1.52
1969 2045 7.306749 CGCCAAAGCAGCCATTAATTATAAAAG 60.307 37.037 0.00 0.00 39.83 2.27
1970 2046 7.518848 GCCAAAGCAGCCATTAATTATAAAAGC 60.519 37.037 0.00 0.00 39.53 3.51
1971 2047 7.495279 CCAAAGCAGCCATTAATTATAAAAGCA 59.505 33.333 0.00 0.00 0.00 3.91
2097 2178 0.460284 ACCTGTGAAATCGGCTAGCG 60.460 55.000 9.00 4.38 0.00 4.26
2098 2179 0.179111 CCTGTGAAATCGGCTAGCGA 60.179 55.000 9.00 10.08 0.00 4.93
2107 4341 0.109735 TCGGCTAGCGATTATGCTCG 60.110 55.000 9.00 3.20 45.87 5.03
2157 4391 2.092323 GTCTGGCCTGAAACAATACCC 58.908 52.381 14.68 0.00 0.00 3.69
2162 4396 3.711704 TGGCCTGAAACAATACCCAAAAA 59.288 39.130 3.32 0.00 0.00 1.94
2187 4423 4.249661 AGGAAAGAGAAGAAGATGCGTTC 58.750 43.478 0.00 0.00 0.00 3.95
2191 4427 6.536941 GGAAAGAGAAGAAGATGCGTTCTATT 59.463 38.462 0.00 0.00 35.65 1.73
2192 4428 6.900568 AAGAGAAGAAGATGCGTTCTATTG 57.099 37.500 0.00 0.00 35.65 1.90
2203 4439 7.946207 AGATGCGTTCTATTGATAGAGAAGAA 58.054 34.615 1.39 0.00 40.23 2.52
2221 4468 8.997323 AGAGAAGAAAATTCATGTAACTCACAG 58.003 33.333 0.00 0.00 41.51 3.66
2224 4471 7.516198 AGAAAATTCATGTAACTCACAGCTT 57.484 32.000 0.00 0.00 41.51 3.74
2246 4493 1.336440 CGCCTCTGATGAGAGTACAGG 59.664 57.143 8.46 0.00 43.98 4.00
2251 4498 4.578516 CCTCTGATGAGAGTACAGGTACAG 59.421 50.000 8.46 0.00 43.98 2.74
2256 4503 1.811359 GAGAGTACAGGTACAGTGCGT 59.189 52.381 11.78 0.00 35.37 5.24
2257 4504 1.540267 AGAGTACAGGTACAGTGCGTG 59.460 52.381 11.78 9.52 35.37 5.34
2272 4519 1.962822 CGTGCATGCTGGACACAGT 60.963 57.895 20.33 0.00 46.62 3.55
2275 4522 0.037160 TGCATGCTGGACACAGTCAT 59.963 50.000 20.33 0.00 46.62 3.06
2278 4525 2.398252 ATGCTGGACACAGTCATGAG 57.602 50.000 0.00 0.00 46.62 2.90
2279 4526 1.341080 TGCTGGACACAGTCATGAGA 58.659 50.000 0.00 0.00 46.62 3.27
2280 4527 1.001293 TGCTGGACACAGTCATGAGAC 59.999 52.381 0.00 0.00 46.62 3.36
2351 4598 1.961277 GGCCACACGGTTGACTCTG 60.961 63.158 0.00 0.00 33.28 3.35
2352 4599 2.607892 GCCACACGGTTGACTCTGC 61.608 63.158 0.00 0.00 33.28 4.26
2353 4600 1.069765 CCACACGGTTGACTCTGCT 59.930 57.895 0.00 0.00 0.00 4.24
2354 4601 1.224069 CCACACGGTTGACTCTGCTG 61.224 60.000 0.00 0.00 0.00 4.41
2355 4602 1.069765 ACACGGTTGACTCTGCTGG 59.930 57.895 0.00 0.00 0.00 4.85
2356 4603 2.031163 ACGGTTGACTCTGCTGGC 59.969 61.111 0.00 0.00 0.00 4.85
2357 4604 2.743928 CGGTTGACTCTGCTGGCC 60.744 66.667 0.00 0.00 0.00 5.36
2358 4605 2.753029 GGTTGACTCTGCTGGCCT 59.247 61.111 3.32 0.00 0.00 5.19
2359 4606 1.376553 GGTTGACTCTGCTGGCCTC 60.377 63.158 3.32 0.00 0.00 4.70
2360 4607 1.372683 GTTGACTCTGCTGGCCTCA 59.627 57.895 3.32 0.49 0.00 3.86
2361 4608 0.673022 GTTGACTCTGCTGGCCTCAG 60.673 60.000 16.40 16.40 43.64 3.35
2362 4609 1.123861 TTGACTCTGCTGGCCTCAGT 61.124 55.000 20.07 8.44 42.78 3.41
2363 4610 1.123861 TGACTCTGCTGGCCTCAGTT 61.124 55.000 20.07 11.67 42.78 3.16
2364 4611 0.673022 GACTCTGCTGGCCTCAGTTG 60.673 60.000 20.07 16.73 42.78 3.16
2365 4612 1.376942 CTCTGCTGGCCTCAGTTGG 60.377 63.158 20.07 11.13 42.78 3.77
2366 4613 1.834856 CTCTGCTGGCCTCAGTTGGA 61.835 60.000 20.07 5.62 42.78 3.53
2367 4614 1.073722 CTGCTGGCCTCAGTTGGAA 59.926 57.895 3.32 0.00 42.78 3.53
2368 4615 0.323178 CTGCTGGCCTCAGTTGGAAT 60.323 55.000 3.32 0.00 42.78 3.01
2369 4616 0.112995 TGCTGGCCTCAGTTGGAATT 59.887 50.000 3.32 0.00 42.78 2.17
2398 4645 0.477204 ATCCATGTGCCTATGCTGCT 59.523 50.000 0.00 0.00 38.71 4.24
2418 4665 3.247886 GCTCGTGATACTATCGACAGTCA 59.752 47.826 0.00 0.00 0.00 3.41
2426 4673 7.968956 GTGATACTATCGACAGTCAGAGAAAAA 59.031 37.037 0.00 0.00 0.00 1.94
2529 4779 2.874457 GCCTGTTCCTGTTATGTTCGGT 60.874 50.000 0.00 0.00 0.00 4.69
2534 4784 1.276989 TCCTGTTATGTTCGGTCCCAC 59.723 52.381 0.00 0.00 0.00 4.61
2547 4797 1.303236 TCCCACTTGCCAATGACGG 60.303 57.895 0.00 0.00 0.00 4.79
2548 4798 2.342650 CCCACTTGCCAATGACGGG 61.343 63.158 0.00 0.00 0.00 5.28
2552 4802 1.675310 CTTGCCAATGACGGGAGCA 60.675 57.895 0.00 0.00 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
101 102 9.617523 TCTGCATATAAGATTTGATCAAAGTCA 57.382 29.630 24.17 11.02 33.32 3.41
102 103 9.875675 GTCTGCATATAAGATTTGATCAAAGTC 57.124 33.333 24.17 19.70 33.32 3.01
103 104 9.624373 AGTCTGCATATAAGATTTGATCAAAGT 57.376 29.630 24.17 14.86 33.32 2.66
132 133 4.741928 ACCTTGTACTCCCTCCATTTTT 57.258 40.909 0.00 0.00 0.00 1.94
133 134 5.281037 CCTTACCTTGTACTCCCTCCATTTT 60.281 44.000 0.00 0.00 0.00 1.82
134 135 4.227527 CCTTACCTTGTACTCCCTCCATTT 59.772 45.833 0.00 0.00 0.00 2.32
135 136 3.780850 CCTTACCTTGTACTCCCTCCATT 59.219 47.826 0.00 0.00 0.00 3.16
136 137 3.246387 ACCTTACCTTGTACTCCCTCCAT 60.246 47.826 0.00 0.00 0.00 3.41
137 138 2.113052 ACCTTACCTTGTACTCCCTCCA 59.887 50.000 0.00 0.00 0.00 3.86
138 139 2.830293 ACCTTACCTTGTACTCCCTCC 58.170 52.381 0.00 0.00 0.00 4.30
139 140 4.864726 TCTACCTTACCTTGTACTCCCTC 58.135 47.826 0.00 0.00 0.00 4.30
140 141 4.961440 TCTACCTTACCTTGTACTCCCT 57.039 45.455 0.00 0.00 0.00 4.20
141 142 7.666063 TTATTCTACCTTACCTTGTACTCCC 57.334 40.000 0.00 0.00 0.00 4.30
142 143 9.761504 GATTTATTCTACCTTACCTTGTACTCC 57.238 37.037 0.00 0.00 0.00 3.85
143 144 9.761504 GGATTTATTCTACCTTACCTTGTACTC 57.238 37.037 0.00 0.00 0.00 2.59
144 145 8.712103 GGGATTTATTCTACCTTACCTTGTACT 58.288 37.037 0.00 0.00 0.00 2.73
145 146 8.488668 TGGGATTTATTCTACCTTACCTTGTAC 58.511 37.037 0.00 0.00 0.00 2.90
146 147 8.488668 GTGGGATTTATTCTACCTTACCTTGTA 58.511 37.037 0.00 0.00 0.00 2.41
147 148 7.344134 GTGGGATTTATTCTACCTTACCTTGT 58.656 38.462 0.00 0.00 0.00 3.16
148 149 6.482308 CGTGGGATTTATTCTACCTTACCTTG 59.518 42.308 0.00 0.00 0.00 3.61
149 150 6.589135 CGTGGGATTTATTCTACCTTACCTT 58.411 40.000 0.00 0.00 0.00 3.50
150 151 5.454329 GCGTGGGATTTATTCTACCTTACCT 60.454 44.000 0.00 0.00 0.00 3.08
151 152 4.753610 GCGTGGGATTTATTCTACCTTACC 59.246 45.833 0.00 0.00 0.00 2.85
152 153 5.608449 AGCGTGGGATTTATTCTACCTTAC 58.392 41.667 0.00 0.00 0.00 2.34
153 154 5.881923 AGCGTGGGATTTATTCTACCTTA 57.118 39.130 0.00 0.00 0.00 2.69
154 155 4.772886 AGCGTGGGATTTATTCTACCTT 57.227 40.909 0.00 0.00 0.00 3.50
155 156 5.046520 GGATAGCGTGGGATTTATTCTACCT 60.047 44.000 0.00 0.00 0.00 3.08
156 157 5.046520 AGGATAGCGTGGGATTTATTCTACC 60.047 44.000 0.00 0.00 0.00 3.18
157 158 6.038997 AGGATAGCGTGGGATTTATTCTAC 57.961 41.667 0.00 0.00 0.00 2.59
158 159 7.973048 ATAGGATAGCGTGGGATTTATTCTA 57.027 36.000 0.00 0.00 0.00 2.10
159 160 6.875972 ATAGGATAGCGTGGGATTTATTCT 57.124 37.500 0.00 0.00 0.00 2.40
160 161 9.614792 AAATATAGGATAGCGTGGGATTTATTC 57.385 33.333 0.00 0.00 0.00 1.75
161 162 9.614792 GAAATATAGGATAGCGTGGGATTTATT 57.385 33.333 0.00 0.00 0.00 1.40
162 163 8.211629 GGAAATATAGGATAGCGTGGGATTTAT 58.788 37.037 0.00 0.00 0.00 1.40
163 164 7.402071 AGGAAATATAGGATAGCGTGGGATTTA 59.598 37.037 0.00 0.00 0.00 1.40
164 165 6.215636 AGGAAATATAGGATAGCGTGGGATTT 59.784 38.462 0.00 0.00 0.00 2.17
165 166 5.726793 AGGAAATATAGGATAGCGTGGGATT 59.273 40.000 0.00 0.00 0.00 3.01
166 167 5.281314 AGGAAATATAGGATAGCGTGGGAT 58.719 41.667 0.00 0.00 0.00 3.85
167 168 4.684724 AGGAAATATAGGATAGCGTGGGA 58.315 43.478 0.00 0.00 0.00 4.37
168 169 6.540438 TTAGGAAATATAGGATAGCGTGGG 57.460 41.667 0.00 0.00 0.00 4.61
266 267 9.768662 AGAAGATGCAAATGAAAATGTAAAACT 57.231 25.926 0.00 0.00 0.00 2.66
272 273 9.932207 TTCAATAGAAGATGCAAATGAAAATGT 57.068 25.926 0.00 0.00 0.00 2.71
293 294 9.167311 ACGAAGATATAAAAGAGCAACTTCAAT 57.833 29.630 0.00 0.00 37.93 2.57
294 295 8.547967 ACGAAGATATAAAAGAGCAACTTCAA 57.452 30.769 0.00 0.00 37.93 2.69
295 296 8.547967 AACGAAGATATAAAAGAGCAACTTCA 57.452 30.769 0.00 0.00 37.93 3.02
296 297 9.827411 AAAACGAAGATATAAAAGAGCAACTTC 57.173 29.630 0.00 0.00 37.93 3.01
297 298 9.612620 CAAAACGAAGATATAAAAGAGCAACTT 57.387 29.630 0.00 0.00 40.98 2.66
298 299 8.784043 ACAAAACGAAGATATAAAAGAGCAACT 58.216 29.630 0.00 0.00 0.00 3.16
299 300 8.950403 ACAAAACGAAGATATAAAAGAGCAAC 57.050 30.769 0.00 0.00 0.00 4.17
310 311 8.830580 CCAACAGATGATACAAAACGAAGATAT 58.169 33.333 0.00 0.00 0.00 1.63
311 312 8.038351 TCCAACAGATGATACAAAACGAAGATA 58.962 33.333 0.00 0.00 0.00 1.98
312 313 6.878923 TCCAACAGATGATACAAAACGAAGAT 59.121 34.615 0.00 0.00 0.00 2.40
313 314 6.227522 TCCAACAGATGATACAAAACGAAGA 58.772 36.000 0.00 0.00 0.00 2.87
314 315 6.147821 ACTCCAACAGATGATACAAAACGAAG 59.852 38.462 0.00 0.00 0.00 3.79
315 316 5.995282 ACTCCAACAGATGATACAAAACGAA 59.005 36.000 0.00 0.00 0.00 3.85
316 317 5.547465 ACTCCAACAGATGATACAAAACGA 58.453 37.500 0.00 0.00 0.00 3.85
317 318 5.862924 ACTCCAACAGATGATACAAAACG 57.137 39.130 0.00 0.00 0.00 3.60
318 319 6.381801 CCAACTCCAACAGATGATACAAAAC 58.618 40.000 0.00 0.00 0.00 2.43
319 320 5.048083 GCCAACTCCAACAGATGATACAAAA 60.048 40.000 0.00 0.00 0.00 2.44
320 321 4.458989 GCCAACTCCAACAGATGATACAAA 59.541 41.667 0.00 0.00 0.00 2.83
321 322 4.009675 GCCAACTCCAACAGATGATACAA 58.990 43.478 0.00 0.00 0.00 2.41
322 323 3.008923 TGCCAACTCCAACAGATGATACA 59.991 43.478 0.00 0.00 0.00 2.29
323 324 3.375299 GTGCCAACTCCAACAGATGATAC 59.625 47.826 0.00 0.00 0.00 2.24
324 325 3.264193 AGTGCCAACTCCAACAGATGATA 59.736 43.478 0.00 0.00 26.77 2.15
325 326 2.040813 AGTGCCAACTCCAACAGATGAT 59.959 45.455 0.00 0.00 26.77 2.45
326 327 1.421268 AGTGCCAACTCCAACAGATGA 59.579 47.619 0.00 0.00 26.77 2.92
327 328 1.901591 AGTGCCAACTCCAACAGATG 58.098 50.000 0.00 0.00 26.77 2.90
328 329 2.664402 AAGTGCCAACTCCAACAGAT 57.336 45.000 0.00 0.00 34.77 2.90
329 330 2.435372 AAAGTGCCAACTCCAACAGA 57.565 45.000 0.00 0.00 34.77 3.41
330 331 3.525268 AAAAAGTGCCAACTCCAACAG 57.475 42.857 0.00 0.00 34.77 3.16
392 393 8.906867 CCCAATAGAAAGATGCAATTTTAGAGA 58.093 33.333 0.00 0.00 0.00 3.10
393 394 8.139989 CCCCAATAGAAAGATGCAATTTTAGAG 58.860 37.037 0.00 0.00 0.00 2.43
394 395 7.838696 TCCCCAATAGAAAGATGCAATTTTAGA 59.161 33.333 0.00 0.00 0.00 2.10
395 396 8.010733 TCCCCAATAGAAAGATGCAATTTTAG 57.989 34.615 0.00 0.00 0.00 1.85
396 397 7.969690 TCCCCAATAGAAAGATGCAATTTTA 57.030 32.000 0.00 0.00 0.00 1.52
397 398 6.872585 TCCCCAATAGAAAGATGCAATTTT 57.127 33.333 0.00 0.00 0.00 1.82
398 399 6.384886 ACATCCCCAATAGAAAGATGCAATTT 59.615 34.615 0.00 0.00 38.28 1.82
399 400 5.901276 ACATCCCCAATAGAAAGATGCAATT 59.099 36.000 0.00 0.00 38.28 2.32
400 401 5.461327 ACATCCCCAATAGAAAGATGCAAT 58.539 37.500 0.00 0.00 38.28 3.56
401 402 4.870636 ACATCCCCAATAGAAAGATGCAA 58.129 39.130 0.00 0.00 38.28 4.08
402 403 4.524802 ACATCCCCAATAGAAAGATGCA 57.475 40.909 0.00 0.00 38.28 3.96
403 404 5.136105 AGAACATCCCCAATAGAAAGATGC 58.864 41.667 0.00 0.00 38.28 3.91
406 407 9.447279 TCTTATAGAACATCCCCAATAGAAAGA 57.553 33.333 0.00 0.00 0.00 2.52
407 408 9.495572 GTCTTATAGAACATCCCCAATAGAAAG 57.504 37.037 0.00 0.00 0.00 2.62
408 409 8.998814 TGTCTTATAGAACATCCCCAATAGAAA 58.001 33.333 0.00 0.00 0.00 2.52
409 410 8.561536 TGTCTTATAGAACATCCCCAATAGAA 57.438 34.615 0.00 0.00 0.00 2.10
410 411 8.742125 ATGTCTTATAGAACATCCCCAATAGA 57.258 34.615 0.00 0.00 0.00 1.98
411 412 9.799106 AAATGTCTTATAGAACATCCCCAATAG 57.201 33.333 3.37 0.00 0.00 1.73
414 415 9.627123 CTAAAATGTCTTATAGAACATCCCCAA 57.373 33.333 3.37 0.00 0.00 4.12
415 416 8.217799 CCTAAAATGTCTTATAGAACATCCCCA 58.782 37.037 3.37 0.00 0.00 4.96
416 417 7.665974 CCCTAAAATGTCTTATAGAACATCCCC 59.334 40.741 3.37 0.00 0.00 4.81
417 418 7.175119 GCCCTAAAATGTCTTATAGAACATCCC 59.825 40.741 3.37 0.00 0.00 3.85
418 419 7.719633 TGCCCTAAAATGTCTTATAGAACATCC 59.280 37.037 3.37 0.00 0.00 3.51
419 420 8.677148 TGCCCTAAAATGTCTTATAGAACATC 57.323 34.615 3.37 0.00 0.00 3.06
420 421 8.275040 ACTGCCCTAAAATGTCTTATAGAACAT 58.725 33.333 0.00 0.00 0.00 2.71
421 422 7.630082 ACTGCCCTAAAATGTCTTATAGAACA 58.370 34.615 0.00 0.00 0.00 3.18
422 423 8.507524 AACTGCCCTAAAATGTCTTATAGAAC 57.492 34.615 0.00 0.00 0.00 3.01
428 429 9.969001 AGTAATTAACTGCCCTAAAATGTCTTA 57.031 29.630 0.00 0.00 36.93 2.10
429 430 8.879427 AGTAATTAACTGCCCTAAAATGTCTT 57.121 30.769 0.00 0.00 36.93 3.01
430 431 8.329502 AGAGTAATTAACTGCCCTAAAATGTCT 58.670 33.333 0.00 0.00 39.07 3.41
431 432 8.507524 AGAGTAATTAACTGCCCTAAAATGTC 57.492 34.615 0.00 0.00 39.07 3.06
432 433 9.614792 CTAGAGTAATTAACTGCCCTAAAATGT 57.385 33.333 0.00 0.00 39.07 2.71
433 434 9.057089 CCTAGAGTAATTAACTGCCCTAAAATG 57.943 37.037 0.00 0.00 39.07 2.32
434 435 8.779031 ACCTAGAGTAATTAACTGCCCTAAAAT 58.221 33.333 0.00 0.00 39.07 1.82
435 436 8.154420 ACCTAGAGTAATTAACTGCCCTAAAA 57.846 34.615 0.00 0.00 39.07 1.52
436 437 7.744678 ACCTAGAGTAATTAACTGCCCTAAA 57.255 36.000 0.00 0.00 39.07 1.85
437 438 9.443365 AATACCTAGAGTAATTAACTGCCCTAA 57.557 33.333 0.00 0.00 39.07 2.69
439 440 7.932683 AATACCTAGAGTAATTAACTGCCCT 57.067 36.000 0.00 0.00 39.07 5.19
440 441 8.093307 GGTAATACCTAGAGTAATTAACTGCCC 58.907 40.741 1.41 0.00 35.06 5.36
441 442 7.811713 CGGTAATACCTAGAGTAATTAACTGCC 59.188 40.741 7.95 0.00 35.54 4.85
442 443 7.328005 GCGGTAATACCTAGAGTAATTAACTGC 59.672 40.741 7.95 3.45 35.54 4.40
443 444 8.355169 TGCGGTAATACCTAGAGTAATTAACTG 58.645 37.037 7.95 0.00 35.54 3.16
444 445 8.469309 TGCGGTAATACCTAGAGTAATTAACT 57.531 34.615 7.95 0.00 37.33 2.24
445 446 7.328005 GCTGCGGTAATACCTAGAGTAATTAAC 59.672 40.741 7.95 0.00 35.66 2.01
446 447 7.373493 GCTGCGGTAATACCTAGAGTAATTAA 58.627 38.462 7.95 0.00 35.66 1.40
447 448 6.071728 GGCTGCGGTAATACCTAGAGTAATTA 60.072 42.308 7.95 0.00 35.66 1.40
448 449 5.279356 GGCTGCGGTAATACCTAGAGTAATT 60.279 44.000 7.95 0.00 35.66 1.40
449 450 4.220163 GGCTGCGGTAATACCTAGAGTAAT 59.780 45.833 7.95 0.00 35.66 1.89
450 451 3.571401 GGCTGCGGTAATACCTAGAGTAA 59.429 47.826 7.95 0.00 35.66 2.24
451 452 3.152341 GGCTGCGGTAATACCTAGAGTA 58.848 50.000 7.95 0.00 35.66 2.59
452 453 1.962100 GGCTGCGGTAATACCTAGAGT 59.038 52.381 7.95 0.00 35.66 3.24
453 454 1.068472 CGGCTGCGGTAATACCTAGAG 60.068 57.143 7.95 1.87 35.66 2.43
454 455 0.956633 CGGCTGCGGTAATACCTAGA 59.043 55.000 7.95 0.00 35.66 2.43
455 456 0.038526 CCGGCTGCGGTAATACCTAG 60.039 60.000 7.95 7.00 35.66 3.02
456 457 0.467844 TCCGGCTGCGGTAATACCTA 60.468 55.000 7.95 0.00 35.66 3.08
457 458 1.119574 ATCCGGCTGCGGTAATACCT 61.120 55.000 7.95 0.00 35.66 3.08
458 459 0.949105 CATCCGGCTGCGGTAATACC 60.949 60.000 0.00 0.00 34.05 2.73
459 460 0.949105 CCATCCGGCTGCGGTAATAC 60.949 60.000 0.00 0.00 0.00 1.89
460 461 1.116536 TCCATCCGGCTGCGGTAATA 61.117 55.000 0.00 0.00 0.00 0.98
461 462 2.111043 CCATCCGGCTGCGGTAAT 59.889 61.111 0.00 0.00 0.00 1.89
462 463 3.078196 TCCATCCGGCTGCGGTAA 61.078 61.111 0.00 0.00 0.00 2.85
463 464 3.845259 GTCCATCCGGCTGCGGTA 61.845 66.667 0.00 0.00 0.00 4.02
473 474 1.153549 GAGTGAGTGCGGTCCATCC 60.154 63.158 0.00 0.00 0.00 3.51
474 475 1.153549 GGAGTGAGTGCGGTCCATC 60.154 63.158 0.00 0.00 0.00 3.51
475 476 2.660064 GGGAGTGAGTGCGGTCCAT 61.660 63.158 0.00 0.00 0.00 3.41
476 477 3.311110 GGGAGTGAGTGCGGTCCA 61.311 66.667 0.00 0.00 0.00 4.02
477 478 4.436998 CGGGAGTGAGTGCGGTCC 62.437 72.222 0.00 0.00 0.00 4.46
478 479 3.222354 AACGGGAGTGAGTGCGGTC 62.222 63.158 0.00 0.00 46.69 4.79
479 480 3.222354 GAACGGGAGTGAGTGCGGT 62.222 63.158 0.00 0.00 46.69 5.68
480 481 1.592400 TAGAACGGGAGTGAGTGCGG 61.592 60.000 0.00 0.00 46.69 5.69
481 482 0.242825 TTAGAACGGGAGTGAGTGCG 59.757 55.000 0.00 0.00 46.69 5.34
482 483 2.450609 TTTAGAACGGGAGTGAGTGC 57.549 50.000 0.00 0.00 46.69 4.40
483 484 4.188247 TGATTTAGAACGGGAGTGAGTG 57.812 45.455 0.00 0.00 46.69 3.51
484 485 4.884668 TTGATTTAGAACGGGAGTGAGT 57.115 40.909 0.00 0.00 46.69 3.41
485 486 5.665459 AGATTGATTTAGAACGGGAGTGAG 58.335 41.667 0.00 0.00 46.69 3.51
486 487 5.677319 AGATTGATTTAGAACGGGAGTGA 57.323 39.130 0.00 0.00 46.69 3.41
487 488 6.371548 TCAAAGATTGATTTAGAACGGGAGTG 59.628 38.462 0.00 0.00 37.79 3.51
488 489 6.472887 TCAAAGATTGATTTAGAACGGGAGT 58.527 36.000 0.00 0.00 39.00 3.85
489 490 6.985188 TCAAAGATTGATTTAGAACGGGAG 57.015 37.500 0.00 0.00 34.08 4.30
490 491 7.753309 TTTCAAAGATTGATTTAGAACGGGA 57.247 32.000 0.00 0.00 39.84 5.14
491 492 8.986477 ATTTTCAAAGATTGATTTAGAACGGG 57.014 30.769 0.00 0.00 39.84 5.28
509 510 9.829507 ACAACAACTTTATCCATCAATTTTCAA 57.170 25.926 0.00 0.00 0.00 2.69
513 514 9.787532 CGATACAACAACTTTATCCATCAATTT 57.212 29.630 0.00 0.00 0.00 1.82
514 515 8.956426 ACGATACAACAACTTTATCCATCAATT 58.044 29.630 0.00 0.00 0.00 2.32
515 516 8.397906 CACGATACAACAACTTTATCCATCAAT 58.602 33.333 0.00 0.00 0.00 2.57
516 517 7.625395 GCACGATACAACAACTTTATCCATCAA 60.625 37.037 0.00 0.00 0.00 2.57
517 518 6.183360 GCACGATACAACAACTTTATCCATCA 60.183 38.462 0.00 0.00 0.00 3.07
518 519 6.183360 TGCACGATACAACAACTTTATCCATC 60.183 38.462 0.00 0.00 0.00 3.51
519 520 5.645929 TGCACGATACAACAACTTTATCCAT 59.354 36.000 0.00 0.00 0.00 3.41
520 521 4.998033 TGCACGATACAACAACTTTATCCA 59.002 37.500 0.00 0.00 0.00 3.41
521 522 5.106869 TGTGCACGATACAACAACTTTATCC 60.107 40.000 13.13 0.00 0.00 2.59
522 523 5.788531 GTGTGCACGATACAACAACTTTATC 59.211 40.000 13.13 0.00 0.00 1.75
523 524 5.237561 TGTGTGCACGATACAACAACTTTAT 59.762 36.000 13.13 0.00 0.00 1.40
524 525 4.571176 TGTGTGCACGATACAACAACTTTA 59.429 37.500 13.13 0.00 0.00 1.85
525 526 3.375610 TGTGTGCACGATACAACAACTTT 59.624 39.130 13.13 0.00 0.00 2.66
526 527 2.939756 TGTGTGCACGATACAACAACTT 59.060 40.909 13.13 0.00 0.00 2.66
527 528 2.556257 TGTGTGCACGATACAACAACT 58.444 42.857 13.13 0.00 0.00 3.16
528 529 3.326733 TTGTGTGCACGATACAACAAC 57.673 42.857 15.11 4.48 31.24 3.32
532 533 2.556257 AGTGTTGTGTGCACGATACAA 58.444 42.857 15.11 15.11 38.73 2.41
533 534 2.232756 AGTGTTGTGTGCACGATACA 57.767 45.000 13.13 12.49 38.73 2.29
534 535 2.286833 ACAAGTGTTGTGTGCACGATAC 59.713 45.455 13.13 9.97 43.48 2.24
535 536 2.556257 ACAAGTGTTGTGTGCACGATA 58.444 42.857 13.13 0.00 43.48 2.92
536 537 1.378531 ACAAGTGTTGTGTGCACGAT 58.621 45.000 13.13 0.00 43.48 3.73
537 538 1.160989 AACAAGTGTTGTGTGCACGA 58.839 45.000 13.13 0.00 44.59 4.35
538 539 2.815657 TAACAAGTGTTGTGTGCACG 57.184 45.000 13.13 0.00 44.59 5.34
539 540 4.285807 TGATAACAAGTGTTGTGTGCAC 57.714 40.909 10.75 10.75 44.59 4.57
540 541 4.261530 CCATGATAACAAGTGTTGTGTGCA 60.262 41.667 6.94 0.00 44.59 4.57
541 542 4.023279 TCCATGATAACAAGTGTTGTGTGC 60.023 41.667 6.94 0.00 44.59 4.57
542 543 5.687770 TCCATGATAACAAGTGTTGTGTG 57.312 39.130 6.94 2.38 44.59 3.82
543 544 6.321181 AGTTTCCATGATAACAAGTGTTGTGT 59.679 34.615 6.94 0.00 44.59 3.72
544 545 6.738114 AGTTTCCATGATAACAAGTGTTGTG 58.262 36.000 6.94 1.51 44.59 3.33
546 547 7.424803 TCAAGTTTCCATGATAACAAGTGTTG 58.575 34.615 6.94 7.25 38.90 3.33
547 548 7.581213 TCAAGTTTCCATGATAACAAGTGTT 57.419 32.000 11.02 1.75 41.73 3.32
548 549 7.448161 TGATCAAGTTTCCATGATAACAAGTGT 59.552 33.333 0.00 0.00 36.45 3.55
549 550 7.819644 TGATCAAGTTTCCATGATAACAAGTG 58.180 34.615 0.00 7.06 36.45 3.16
550 551 8.299570 GTTGATCAAGTTTCCATGATAACAAGT 58.700 33.333 8.80 0.00 36.45 3.16
551 552 8.298854 TGTTGATCAAGTTTCCATGATAACAAG 58.701 33.333 8.80 4.79 36.45 3.16
552 553 8.175925 TGTTGATCAAGTTTCCATGATAACAA 57.824 30.769 8.80 0.00 36.45 2.83
553 554 7.757941 TGTTGATCAAGTTTCCATGATAACA 57.242 32.000 8.80 0.00 36.45 2.41
554 555 7.271223 CGTTGTTGATCAAGTTTCCATGATAAC 59.729 37.037 8.80 0.00 36.45 1.89
555 556 7.304735 CGTTGTTGATCAAGTTTCCATGATAA 58.695 34.615 8.80 0.00 36.45 1.75
556 557 6.128035 CCGTTGTTGATCAAGTTTCCATGATA 60.128 38.462 8.80 0.00 36.45 2.15
557 558 5.335897 CCGTTGTTGATCAAGTTTCCATGAT 60.336 40.000 8.80 0.00 38.93 2.45
558 559 4.023279 CCGTTGTTGATCAAGTTTCCATGA 60.023 41.667 8.80 0.00 36.66 3.07
559 560 4.229096 CCGTTGTTGATCAAGTTTCCATG 58.771 43.478 8.80 0.00 36.66 3.66
560 561 3.255642 CCCGTTGTTGATCAAGTTTCCAT 59.744 43.478 8.80 0.00 36.66 3.41
561 562 2.621055 CCCGTTGTTGATCAAGTTTCCA 59.379 45.455 8.80 0.00 36.66 3.53
562 563 2.882137 TCCCGTTGTTGATCAAGTTTCC 59.118 45.455 8.80 0.00 36.66 3.13
563 564 4.274950 TCTTCCCGTTGTTGATCAAGTTTC 59.725 41.667 8.80 0.00 36.66 2.78
564 565 4.204012 TCTTCCCGTTGTTGATCAAGTTT 58.796 39.130 8.80 0.00 36.66 2.66
565 566 3.815809 TCTTCCCGTTGTTGATCAAGTT 58.184 40.909 8.80 0.00 36.66 2.66
566 567 3.485463 TCTTCCCGTTGTTGATCAAGT 57.515 42.857 8.80 0.00 36.66 3.16
567 568 5.817296 TGATATCTTCCCGTTGTTGATCAAG 59.183 40.000 8.80 0.00 36.66 3.02
568 569 5.739959 TGATATCTTCCCGTTGTTGATCAA 58.260 37.500 3.38 3.38 0.00 2.57
569 570 5.351948 TGATATCTTCCCGTTGTTGATCA 57.648 39.130 3.98 0.00 0.00 2.92
570 571 5.584649 TGTTGATATCTTCCCGTTGTTGATC 59.415 40.000 3.98 0.00 0.00 2.92
571 572 5.496556 TGTTGATATCTTCCCGTTGTTGAT 58.503 37.500 3.98 0.00 0.00 2.57
572 573 4.900684 TGTTGATATCTTCCCGTTGTTGA 58.099 39.130 3.98 0.00 0.00 3.18
573 574 5.220854 GGATGTTGATATCTTCCCGTTGTTG 60.221 44.000 3.98 0.00 0.00 3.33
574 575 4.881850 GGATGTTGATATCTTCCCGTTGTT 59.118 41.667 3.98 0.00 0.00 2.83
575 576 4.451900 GGATGTTGATATCTTCCCGTTGT 58.548 43.478 3.98 0.00 0.00 3.32
576 577 3.815401 GGGATGTTGATATCTTCCCGTTG 59.185 47.826 14.00 0.00 38.75 4.10
577 578 4.086706 GGGATGTTGATATCTTCCCGTT 57.913 45.455 14.00 0.00 38.75 4.44
578 579 3.771577 GGGATGTTGATATCTTCCCGT 57.228 47.619 14.00 0.00 38.75 5.28
580 581 3.771577 ACGGGATGTTGATATCTTCCC 57.228 47.619 17.04 17.04 42.36 3.97
581 582 6.464222 TGATAACGGGATGTTGATATCTTCC 58.536 40.000 3.98 5.36 42.01 3.46
582 583 7.604164 ACATGATAACGGGATGTTGATATCTTC 59.396 37.037 0.00 0.00 42.01 2.87
583 584 7.453393 ACATGATAACGGGATGTTGATATCTT 58.547 34.615 0.00 0.00 42.01 2.40
584 585 7.009179 ACATGATAACGGGATGTTGATATCT 57.991 36.000 0.00 0.00 42.01 1.98
585 586 8.035394 AGTACATGATAACGGGATGTTGATATC 58.965 37.037 0.00 0.00 42.01 1.63
586 587 7.819415 CAGTACATGATAACGGGATGTTGATAT 59.181 37.037 0.00 0.00 42.01 1.63
587 588 7.151976 CAGTACATGATAACGGGATGTTGATA 58.848 38.462 0.00 0.00 42.01 2.15
588 589 5.991606 CAGTACATGATAACGGGATGTTGAT 59.008 40.000 0.00 0.00 42.01 2.57
589 590 5.105106 ACAGTACATGATAACGGGATGTTGA 60.105 40.000 0.00 0.00 42.01 3.18
590 591 5.116180 ACAGTACATGATAACGGGATGTTG 58.884 41.667 0.00 0.00 42.01 3.33
591 592 5.353394 ACAGTACATGATAACGGGATGTT 57.647 39.130 0.00 0.00 44.78 2.71
592 593 5.597182 AGTACAGTACATGATAACGGGATGT 59.403 40.000 13.37 0.00 34.68 3.06
593 594 6.085555 AGTACAGTACATGATAACGGGATG 57.914 41.667 13.37 0.00 0.00 3.51
594 595 7.450634 ACATAGTACAGTACATGATAACGGGAT 59.549 37.037 20.84 0.00 0.00 3.85
595 596 6.774170 ACATAGTACAGTACATGATAACGGGA 59.226 38.462 20.84 0.00 0.00 5.14
596 597 6.978338 ACATAGTACAGTACATGATAACGGG 58.022 40.000 20.84 0.00 0.00 5.28
597 598 8.781196 ACTACATAGTACAGTACATGATAACGG 58.219 37.037 20.84 0.00 34.13 4.44
613 614 8.192774 CCAAAATGAACGAGGTACTACATAGTA 58.807 37.037 0.00 0.00 41.55 1.82
614 615 7.039882 CCAAAATGAACGAGGTACTACATAGT 58.960 38.462 0.00 0.00 41.55 2.12
615 616 7.262772 TCCAAAATGAACGAGGTACTACATAG 58.737 38.462 0.00 0.00 41.55 2.23
616 617 7.172868 TCCAAAATGAACGAGGTACTACATA 57.827 36.000 0.00 0.00 41.55 2.29
617 618 6.045072 TCCAAAATGAACGAGGTACTACAT 57.955 37.500 0.00 0.00 41.55 2.29
618 619 5.471556 TCCAAAATGAACGAGGTACTACA 57.528 39.130 0.00 0.00 41.55 2.74
619 620 8.142551 AGATATCCAAAATGAACGAGGTACTAC 58.857 37.037 0.00 0.00 41.55 2.73
620 621 8.246430 AGATATCCAAAATGAACGAGGTACTA 57.754 34.615 0.00 0.00 41.55 1.82
622 623 7.280205 ACAAGATATCCAAAATGAACGAGGTAC 59.720 37.037 0.00 0.00 0.00 3.34
623 624 7.335627 ACAAGATATCCAAAATGAACGAGGTA 58.664 34.615 0.00 0.00 0.00 3.08
628 629 8.664798 TCACTAACAAGATATCCAAAATGAACG 58.335 33.333 0.00 0.00 0.00 3.95
641 642 8.076781 GCTGACGATAATCTCACTAACAAGATA 58.923 37.037 0.00 0.00 32.01 1.98
642 643 6.920758 GCTGACGATAATCTCACTAACAAGAT 59.079 38.462 0.00 0.00 33.67 2.40
644 645 6.036470 TGCTGACGATAATCTCACTAACAAG 58.964 40.000 0.00 0.00 0.00 3.16
645 646 5.961272 TGCTGACGATAATCTCACTAACAA 58.039 37.500 0.00 0.00 0.00 2.83
646 647 5.576447 TGCTGACGATAATCTCACTAACA 57.424 39.130 0.00 0.00 0.00 2.41
731 756 0.179156 TCTTTACGATGACCGGCGAC 60.179 55.000 9.30 2.28 43.93 5.19
746 771 1.388133 GGGAGGCATGGGGTTCTTT 59.612 57.895 0.00 0.00 0.00 2.52
762 787 0.251916 TACGTGGCAATGAGAAGGGG 59.748 55.000 0.00 0.00 0.00 4.79
810 835 0.526662 GTCCAGACTGTCAGGTACCG 59.473 60.000 17.42 1.56 0.00 4.02
811 836 0.896226 GGTCCAGACTGTCAGGTACC 59.104 60.000 17.42 17.75 0.00 3.34
872 897 1.079127 GGATGACGTGGGTGTGGAG 60.079 63.158 0.00 0.00 0.00 3.86
900 929 7.147811 GGAAGAAAGGTCGCAGGATAGATATAT 60.148 40.741 0.00 0.00 0.00 0.86
907 936 2.431057 GAGGAAGAAAGGTCGCAGGATA 59.569 50.000 0.00 0.00 0.00 2.59
919 948 3.136443 TGGCTTGAACTGAGAGGAAGAAA 59.864 43.478 0.00 0.00 0.00 2.52
978 1008 0.319813 TGCGTGTGTGATGTGAGAGG 60.320 55.000 0.00 0.00 0.00 3.69
1578 1632 0.813210 GTGTGCAGAGAGGGCATAGC 60.813 60.000 0.00 0.00 44.11 2.97
1579 1633 0.538584 TGTGTGCAGAGAGGGCATAG 59.461 55.000 0.00 0.00 44.11 2.23
1580 1634 1.206878 ATGTGTGCAGAGAGGGCATA 58.793 50.000 0.00 0.00 44.11 3.14
1581 1635 1.206878 TATGTGTGCAGAGAGGGCAT 58.793 50.000 0.00 0.00 44.11 4.40
1582 1636 1.134310 CATATGTGTGCAGAGAGGGCA 60.134 52.381 0.00 0.00 39.32 5.36
1583 1637 1.590932 CATATGTGTGCAGAGAGGGC 58.409 55.000 0.00 0.00 0.00 5.19
1584 1638 1.590932 GCATATGTGTGCAGAGAGGG 58.409 55.000 4.29 0.00 44.43 4.30
1613 1667 2.906389 TCTAGTCACAACCAGAAGGCAT 59.094 45.455 0.00 0.00 39.06 4.40
1643 1697 4.887071 ACGAACACATATATGGTTGCCAAT 59.113 37.500 16.96 0.00 36.95 3.16
1677 1738 9.046296 ACATAAACGGAATAATTAAGCTCAGAG 57.954 33.333 0.00 0.00 0.00 3.35
1711 1772 8.897752 CGAGTCAATCATAGATATGTATGAGGA 58.102 37.037 22.65 19.39 41.61 3.71
1712 1773 8.681806 ACGAGTCAATCATAGATATGTATGAGG 58.318 37.037 22.65 17.91 41.61 3.86
1721 1782 9.945904 AGACATAGTACGAGTCAATCATAGATA 57.054 33.333 14.72 0.00 34.80 1.98
1722 1783 8.856153 AGACATAGTACGAGTCAATCATAGAT 57.144 34.615 14.72 0.00 34.80 1.98
1723 1784 8.151596 AGAGACATAGTACGAGTCAATCATAGA 58.848 37.037 14.72 0.00 34.80 1.98
1724 1785 8.317891 AGAGACATAGTACGAGTCAATCATAG 57.682 38.462 14.72 0.00 34.80 2.23
1725 1786 8.151596 AGAGAGACATAGTACGAGTCAATCATA 58.848 37.037 14.72 0.00 34.80 2.15
1726 1787 6.995686 AGAGAGACATAGTACGAGTCAATCAT 59.004 38.462 14.72 0.00 34.80 2.45
1727 1788 6.258947 CAGAGAGACATAGTACGAGTCAATCA 59.741 42.308 14.72 0.00 34.80 2.57
1728 1789 6.293190 CCAGAGAGACATAGTACGAGTCAATC 60.293 46.154 14.72 11.91 34.80 2.67
1729 1790 5.529430 CCAGAGAGACATAGTACGAGTCAAT 59.471 44.000 14.72 5.55 34.80 2.57
1730 1791 4.876679 CCAGAGAGACATAGTACGAGTCAA 59.123 45.833 14.72 0.00 34.80 3.18
1731 1792 4.161754 TCCAGAGAGACATAGTACGAGTCA 59.838 45.833 14.72 0.00 34.80 3.41
1742 1803 1.550976 GAAACCCGTCCAGAGAGACAT 59.449 52.381 0.00 0.00 36.52 3.06
1872 1948 3.121944 CGAAAGACAGTTGATCTTGACCG 59.878 47.826 0.00 0.00 36.52 4.79
1921 1997 3.868077 GCACTAATCACTCAGCTGGTTAG 59.132 47.826 15.13 15.40 39.74 2.34
2097 2178 5.786401 AAGTGACTGTTTCGAGCATAATC 57.214 39.130 0.00 0.00 0.00 1.75
2098 2179 5.700832 TGAAAGTGACTGTTTCGAGCATAAT 59.299 36.000 0.00 0.00 36.81 1.28
2107 4341 3.545633 GCGACATGAAAGTGACTGTTTC 58.454 45.455 0.00 0.00 34.95 2.78
2162 4396 5.066593 ACGCATCTTCTTCTCTTTCCTTTT 58.933 37.500 0.00 0.00 0.00 2.27
2182 4418 9.856803 GAATTTTCTTCTCTATCAATAGAACGC 57.143 33.333 1.64 0.00 38.80 4.84
2203 4439 5.464168 GCAAGCTGTGAGTTACATGAATTT 58.536 37.500 0.00 0.00 38.92 1.82
2246 4493 1.133253 CAGCATGCACGCACTGTAC 59.867 57.895 21.98 0.00 0.00 2.90
2251 4498 3.356267 TGTCCAGCATGCACGCAC 61.356 61.111 21.98 7.39 31.97 5.34
2256 4503 0.037160 ATGACTGTGTCCAGCATGCA 59.963 50.000 21.98 0.00 42.81 3.96
2257 4504 0.450583 CATGACTGTGTCCAGCATGC 59.549 55.000 10.51 10.51 41.62 4.06
2272 4519 0.906775 TCTGCTGCCATGTCTCATGA 59.093 50.000 10.75 0.00 0.00 3.07
2275 4522 1.078637 GCTCTGCTGCCATGTCTCA 60.079 57.895 0.00 0.00 0.00 3.27
2276 4523 1.221293 AGCTCTGCTGCCATGTCTC 59.779 57.895 0.00 0.00 37.57 3.36
2277 4524 3.401332 AGCTCTGCTGCCATGTCT 58.599 55.556 0.00 0.00 37.57 3.41
2339 4586 2.031163 GCCAGCAGAGTCAACCGT 59.969 61.111 0.00 0.00 0.00 4.83
2351 4598 1.203287 GAAATTCCAACTGAGGCCAGC 59.797 52.381 5.01 0.00 44.16 4.85
2352 4599 1.470098 CGAAATTCCAACTGAGGCCAG 59.530 52.381 5.01 0.00 45.76 4.85
2353 4600 1.202879 ACGAAATTCCAACTGAGGCCA 60.203 47.619 5.01 0.00 0.00 5.36
2354 4601 1.468914 GACGAAATTCCAACTGAGGCC 59.531 52.381 0.00 0.00 0.00 5.19
2355 4602 2.416893 GAGACGAAATTCCAACTGAGGC 59.583 50.000 0.00 0.00 0.00 4.70
2356 4603 2.668457 CGAGACGAAATTCCAACTGAGG 59.332 50.000 0.00 0.00 0.00 3.86
2357 4604 2.092838 GCGAGACGAAATTCCAACTGAG 59.907 50.000 0.00 0.00 0.00 3.35
2358 4605 2.066262 GCGAGACGAAATTCCAACTGA 58.934 47.619 0.00 0.00 0.00 3.41
2359 4606 1.798223 TGCGAGACGAAATTCCAACTG 59.202 47.619 0.00 0.00 0.00 3.16
2360 4607 2.163818 TGCGAGACGAAATTCCAACT 57.836 45.000 0.00 0.00 0.00 3.16
2361 4608 2.223044 GGATGCGAGACGAAATTCCAAC 60.223 50.000 0.00 0.00 0.00 3.77
2362 4609 2.006888 GGATGCGAGACGAAATTCCAA 58.993 47.619 0.00 0.00 0.00 3.53
2363 4610 1.066502 TGGATGCGAGACGAAATTCCA 60.067 47.619 0.00 0.00 0.00 3.53
2364 4611 1.651987 TGGATGCGAGACGAAATTCC 58.348 50.000 0.00 0.00 0.00 3.01
2365 4612 2.609459 ACATGGATGCGAGACGAAATTC 59.391 45.455 0.00 0.00 0.00 2.17
2366 4613 2.352651 CACATGGATGCGAGACGAAATT 59.647 45.455 0.00 0.00 0.00 1.82
2367 4614 1.935873 CACATGGATGCGAGACGAAAT 59.064 47.619 0.00 0.00 0.00 2.17
2368 4615 1.358877 CACATGGATGCGAGACGAAA 58.641 50.000 0.00 0.00 0.00 3.46
2369 4616 1.083806 GCACATGGATGCGAGACGAA 61.084 55.000 0.00 0.00 35.50 3.85
2398 4645 4.690122 TCTGACTGTCGATAGTATCACGA 58.310 43.478 15.33 6.86 37.40 4.35
2418 4665 7.468141 AAAACAGTTTCCAGTCTTTTTCTCT 57.532 32.000 0.00 0.00 0.00 3.10
2426 4673 2.864343 CGACGAAAACAGTTTCCAGTCT 59.136 45.455 18.35 0.00 40.13 3.24
2432 4679 3.938778 AAGTCCGACGAAAACAGTTTC 57.061 42.857 0.00 0.00 39.90 2.78
2529 4779 1.303236 CCGTCATTGGCAAGTGGGA 60.303 57.895 5.96 0.00 0.00 4.37
2534 4784 1.033746 ATGCTCCCGTCATTGGCAAG 61.034 55.000 5.96 0.00 36.49 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.