Multiple sequence alignment - TraesCS5A01G140600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G140600 chr5A 100.000 5700 0 0 1 5700 312887398 312893097 0.000000e+00 10527.0
1 TraesCS5A01G140600 chr5A 88.808 956 81 16 338 1292 312829751 312830681 0.000000e+00 1149.0
2 TraesCS5A01G140600 chr5A 84.477 277 37 2 69 339 312829434 312829710 9.410000e-68 268.0
3 TraesCS5A01G140600 chr5D 93.485 3024 137 32 338 3344 241024817 241021837 0.000000e+00 4438.0
4 TraesCS5A01G140600 chr5D 93.112 1597 84 16 3346 4925 241021805 241020218 0.000000e+00 2316.0
5 TraesCS5A01G140600 chr5D 97.019 671 18 2 5031 5700 324395910 324395241 0.000000e+00 1127.0
6 TraesCS5A01G140600 chr5D 97.019 671 17 3 5031 5700 368739933 368739265 0.000000e+00 1125.0
7 TraesCS5A01G140600 chr5D 96.603 677 21 2 5025 5700 555474610 555475285 0.000000e+00 1122.0
8 TraesCS5A01G140600 chr5D 87.072 263 26 4 84 339 241025119 241024858 2.010000e-74 291.0
9 TraesCS5A01G140600 chr5B 94.174 2626 116 24 606 3219 262749187 262751787 0.000000e+00 3967.0
10 TraesCS5A01G140600 chr5B 93.042 1581 87 16 3347 4914 262751906 262753476 0.000000e+00 2289.0
11 TraesCS5A01G140600 chr5B 84.173 278 37 2 66 337 262747785 262748061 4.380000e-66 263.0
12 TraesCS5A01G140600 chr5B 84.674 261 23 10 349 604 262748120 262748368 1.590000e-60 244.0
13 TraesCS5A01G140600 chr5B 100.000 40 0 0 1379 1418 262749918 262749957 2.200000e-09 75.0
14 TraesCS5A01G140600 chr4D 97.466 671 15 2 5031 5700 464684118 464683449 0.000000e+00 1144.0
15 TraesCS5A01G140600 chr4D 97.168 671 17 2 5031 5700 60485629 60484960 0.000000e+00 1133.0
16 TraesCS5A01G140600 chr4D 96.000 75 3 0 4972 5046 20430741 20430815 7.760000e-24 122.0
17 TraesCS5A01G140600 chr4D 96.000 75 3 0 4972 5046 60485700 60485774 7.760000e-24 122.0
18 TraesCS5A01G140600 chr4D 96.000 75 3 0 4972 5046 464684189 464684263 7.760000e-24 122.0
19 TraesCS5A01G140600 chr6D 97.168 671 17 2 5031 5700 433634476 433635145 0.000000e+00 1133.0
20 TraesCS5A01G140600 chr6D 97.019 671 18 2 5031 5700 387587602 387586933 0.000000e+00 1127.0
21 TraesCS5A01G140600 chr6D 96.000 75 3 0 4972 5046 162289555 162289629 7.760000e-24 122.0
22 TraesCS5A01G140600 chr6D 96.000 75 3 0 4972 5046 269755456 269755382 7.760000e-24 122.0
23 TraesCS5A01G140600 chr6D 96.000 75 3 0 4972 5046 387587673 387587747 7.760000e-24 122.0
24 TraesCS5A01G140600 chr7D 97.019 671 18 2 5031 5700 566031921 566032590 0.000000e+00 1127.0
25 TraesCS5A01G140600 chr3D 97.019 671 18 2 5031 5700 598335417 598334748 0.000000e+00 1127.0
26 TraesCS5A01G140600 chr7A 97.368 76 2 0 4971 5046 696233575 696233500 4.630000e-26 130.0
27 TraesCS5A01G140600 chr1D 97.333 75 2 0 4972 5046 481822841 481822767 1.670000e-25 128.0
28 TraesCS5A01G140600 chr3B 96.053 76 3 0 4971 5046 275871144 275871219 2.160000e-24 124.0
29 TraesCS5A01G140600 chr4A 93.651 63 4 0 1 63 710011897 710011835 1.690000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G140600 chr5A 312887398 312893097 5699 False 10527.000000 10527 100.0000 1 5700 1 chr5A.!!$F1 5699
1 TraesCS5A01G140600 chr5A 312829434 312830681 1247 False 708.500000 1149 86.6425 69 1292 2 chr5A.!!$F2 1223
2 TraesCS5A01G140600 chr5D 241020218 241025119 4901 True 2348.333333 4438 91.2230 84 4925 3 chr5D.!!$R3 4841
3 TraesCS5A01G140600 chr5D 324395241 324395910 669 True 1127.000000 1127 97.0190 5031 5700 1 chr5D.!!$R1 669
4 TraesCS5A01G140600 chr5D 368739265 368739933 668 True 1125.000000 1125 97.0190 5031 5700 1 chr5D.!!$R2 669
5 TraesCS5A01G140600 chr5D 555474610 555475285 675 False 1122.000000 1122 96.6030 5025 5700 1 chr5D.!!$F1 675
6 TraesCS5A01G140600 chr5B 262747785 262753476 5691 False 1367.600000 3967 91.2126 66 4914 5 chr5B.!!$F1 4848
7 TraesCS5A01G140600 chr4D 464683449 464684118 669 True 1144.000000 1144 97.4660 5031 5700 1 chr4D.!!$R2 669
8 TraesCS5A01G140600 chr4D 60484960 60485629 669 True 1133.000000 1133 97.1680 5031 5700 1 chr4D.!!$R1 669
9 TraesCS5A01G140600 chr6D 433634476 433635145 669 False 1133.000000 1133 97.1680 5031 5700 1 chr6D.!!$F3 669
10 TraesCS5A01G140600 chr6D 387586933 387587602 669 True 1127.000000 1127 97.0190 5031 5700 1 chr6D.!!$R2 669
11 TraesCS5A01G140600 chr7D 566031921 566032590 669 False 1127.000000 1127 97.0190 5031 5700 1 chr7D.!!$F1 669
12 TraesCS5A01G140600 chr3D 598334748 598335417 669 True 1127.000000 1127 97.0190 5031 5700 1 chr3D.!!$R1 669

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
256 263 0.392461 GCGATTGTTGGCTGGGTAGA 60.392 55.000 0.00 0.00 0.00 2.59 F
302 309 0.539051 AGAATGAAGAGTGCGGGAGG 59.461 55.000 0.00 0.00 0.00 4.30 F
1574 2457 1.657822 GAGGAAGAGCATTCGGTTCC 58.342 55.000 0.00 0.00 39.08 3.62 F
1645 2528 0.393132 GGAAACAGTAGGGCTCCTGC 60.393 60.000 4.16 2.97 36.48 4.85 F
1648 2531 0.995024 AACAGTAGGGCTCCTGCATT 59.005 50.000 10.92 3.59 38.73 3.56 F
2614 3504 1.682854 ACCCTCAACAAACTGCACATG 59.317 47.619 0.00 0.00 0.00 3.21 F
4092 5034 0.681733 TGAAGACTGTGCTGGTCCTC 59.318 55.000 0.00 0.00 34.56 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1574 2457 0.602106 CCGGATGCAGCTACTCATGG 60.602 60.000 0.22 0.0 0.00 3.66 R
1616 2499 2.303022 CCTACTGTTTCCTTCTGCTCCA 59.697 50.000 0.00 0.0 0.00 3.86 R
3495 4435 0.811915 TCAGAGAGTACTTCCGCTGC 59.188 55.000 9.56 0.0 31.98 5.25 R
3720 4660 6.588719 AGCAAACATAAACCAGCTAATCAA 57.411 33.333 0.00 0.0 0.00 2.57 R
3723 4663 7.829211 TCTCTAAGCAAACATAAACCAGCTAAT 59.171 33.333 0.00 0.0 0.00 1.73 R
4134 5076 1.933021 TCATCCCAAGGACTACGTGT 58.067 50.000 0.00 0.0 32.98 4.49 R
4911 5873 0.178975 AGGGACATGCGGGAACAAAA 60.179 50.000 0.00 0.0 0.00 2.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 9.210329 ACATTTAAAAAGTTATTTTTAGGCCCG 57.790 29.630 0.00 0.00 46.32 6.13
29 30 8.661257 CATTTAAAAAGTTATTTTTAGGCCCGG 58.339 33.333 0.00 0.00 46.32 5.73
30 31 4.811969 AAAAGTTATTTTTAGGCCCGGG 57.188 40.909 19.09 19.09 37.22 5.73
31 32 3.743092 AAGTTATTTTTAGGCCCGGGA 57.257 42.857 29.31 0.00 0.00 5.14
32 33 3.292492 AGTTATTTTTAGGCCCGGGAG 57.708 47.619 29.31 0.00 0.00 4.30
33 34 1.679680 GTTATTTTTAGGCCCGGGAGC 59.320 52.381 29.31 10.00 0.00 4.70
34 35 0.920438 TATTTTTAGGCCCGGGAGCA 59.080 50.000 29.31 4.01 0.00 4.26
35 36 0.683179 ATTTTTAGGCCCGGGAGCAC 60.683 55.000 29.31 11.07 0.00 4.40
36 37 3.615509 TTTTAGGCCCGGGAGCACG 62.616 63.158 29.31 0.00 0.00 5.34
50 51 4.436998 CACGTGCTCCCGGGAGTC 62.437 72.222 43.19 35.06 43.70 3.36
53 54 3.379445 GTGCTCCCGGGAGTCGAA 61.379 66.667 43.19 27.24 43.70 3.71
54 55 2.363795 TGCTCCCGGGAGTCGAAT 60.364 61.111 43.19 0.00 43.70 3.34
55 56 1.987855 TGCTCCCGGGAGTCGAATT 60.988 57.895 43.19 0.00 43.70 2.17
56 57 1.521681 GCTCCCGGGAGTCGAATTG 60.522 63.158 43.19 22.93 43.70 2.32
57 58 1.956629 GCTCCCGGGAGTCGAATTGA 61.957 60.000 43.19 11.66 43.70 2.57
58 59 0.535335 CTCCCGGGAGTCGAATTGAA 59.465 55.000 38.17 6.11 42.43 2.69
59 60 1.139058 CTCCCGGGAGTCGAATTGAAT 59.861 52.381 38.17 0.00 42.43 2.57
60 61 1.557832 TCCCGGGAGTCGAATTGAATT 59.442 47.619 22.63 0.00 42.43 2.17
61 62 2.026636 TCCCGGGAGTCGAATTGAATTT 60.027 45.455 22.63 0.00 42.43 1.82
62 63 2.354821 CCCGGGAGTCGAATTGAATTTC 59.645 50.000 18.48 0.00 42.43 2.17
63 64 3.270877 CCGGGAGTCGAATTGAATTTCT 58.729 45.455 0.00 0.00 42.43 2.52
64 65 3.063997 CCGGGAGTCGAATTGAATTTCTG 59.936 47.826 0.00 0.00 42.43 3.02
149 156 7.609532 AGGGACAATCATAGTTTCTTTTCTCAG 59.390 37.037 0.00 0.00 0.00 3.35
197 204 2.872858 GGGTCTGAAATATCTTCCACGC 59.127 50.000 0.00 0.00 0.00 5.34
207 214 1.717194 TCTTCCACGCGGTTATTGTC 58.283 50.000 12.47 0.00 0.00 3.18
233 240 4.078639 CTCTGCATTTTAGAGGGGTAGG 57.921 50.000 0.00 0.00 38.37 3.18
235 242 1.850345 TGCATTTTAGAGGGGTAGGGG 59.150 52.381 0.00 0.00 0.00 4.79
256 263 0.392461 GCGATTGTTGGCTGGGTAGA 60.392 55.000 0.00 0.00 0.00 2.59
302 309 0.539051 AGAATGAAGAGTGCGGGAGG 59.461 55.000 0.00 0.00 0.00 4.30
309 316 3.432051 GAGTGCGGGAGGTCGATGG 62.432 68.421 0.00 0.00 0.00 3.51
352 406 2.765807 CCGGGACATCAGAGGGCT 60.766 66.667 0.00 0.00 0.00 5.19
354 408 2.914289 GGGACATCAGAGGGCTGG 59.086 66.667 0.00 0.00 42.53 4.85
398 453 2.356844 GGTCTTGGGGAAGTATTGGGTC 60.357 54.545 0.00 0.00 0.00 4.46
406 461 5.955355 TGGGGAAGTATTGGGTCATAAAAAG 59.045 40.000 0.00 0.00 0.00 2.27
505 563 2.496470 GTCGGAGATGTTCTTACCACCT 59.504 50.000 0.00 0.00 40.67 4.00
565 624 5.804944 TGAGCAAGAAATTTTTGGGATGA 57.195 34.783 12.13 0.00 0.00 2.92
573 632 8.773645 CAAGAAATTTTTGGGATGAAACTTACC 58.226 33.333 0.00 0.00 0.00 2.85
575 634 8.659527 AGAAATTTTTGGGATGAAACTTACCAT 58.340 29.630 0.00 0.00 0.00 3.55
581 640 7.639113 TTGGGATGAAACTTACCATATGTTC 57.361 36.000 1.24 0.00 0.00 3.18
584 643 8.210946 TGGGATGAAACTTACCATATGTTCTAG 58.789 37.037 1.24 0.00 0.00 2.43
667 1543 1.971167 GGATCACTGCCGTGCCAAA 60.971 57.895 2.98 0.00 40.99 3.28
695 1571 6.372659 GCTTGGAGTGAGAAGTGAAAATGATA 59.627 38.462 0.00 0.00 0.00 2.15
729 1605 6.149633 ACAGGACGTTCAATTTTTCTTATGC 58.850 36.000 0.00 0.00 0.00 3.14
873 1749 7.787725 AGATTAGCGTAAATAAAACTCTGGG 57.212 36.000 0.00 0.00 0.00 4.45
1139 2015 2.733517 CGCTTCTCGAGTAAGGATTCC 58.266 52.381 13.13 0.00 41.67 3.01
1267 2147 2.379005 GTTTGCTGGATTTAGGAGGGG 58.621 52.381 0.00 0.00 0.00 4.79
1377 2258 3.069980 GCAGAGCGTCGGGATCAGT 62.070 63.158 0.00 0.00 32.03 3.41
1410 2291 1.880340 CAGAGCGTTCGGGATCAGC 60.880 63.158 0.00 0.00 0.00 4.26
1574 2457 1.657822 GAGGAAGAGCATTCGGTTCC 58.342 55.000 0.00 0.00 39.08 3.62
1615 2498 2.989166 GCATGAGCAGGCTTGTTTTTAC 59.011 45.455 0.00 0.00 41.58 2.01
1616 2499 3.305608 GCATGAGCAGGCTTGTTTTTACT 60.306 43.478 0.00 0.00 41.58 2.24
1645 2528 0.393132 GGAAACAGTAGGGCTCCTGC 60.393 60.000 4.16 2.97 36.48 4.85
1648 2531 0.995024 AACAGTAGGGCTCCTGCATT 59.005 50.000 10.92 3.59 38.73 3.56
1680 2563 2.902705 TTGCGTTCAGAACCAGTAGT 57.097 45.000 7.76 0.00 0.00 2.73
1681 2564 2.902705 TGCGTTCAGAACCAGTAGTT 57.097 45.000 7.76 0.00 43.07 2.24
1873 2756 1.736681 GCATTTGTGCCTCAGAGACTC 59.263 52.381 0.00 0.00 0.00 3.36
2148 3031 6.326323 TGGCAGTGAGTAGGATTATGTTATGA 59.674 38.462 0.00 0.00 0.00 2.15
2294 3177 8.372459 AGTTATTTTAAACCTTTTGTGATCCCC 58.628 33.333 0.00 0.00 0.00 4.81
2316 3199 4.871557 CCAATTGGTACTGCAAATTCCATG 59.128 41.667 16.90 0.00 28.49 3.66
2614 3504 1.682854 ACCCTCAACAAACTGCACATG 59.317 47.619 0.00 0.00 0.00 3.21
2887 3778 6.985059 GTGTAGTTTCTGACTTTCTGTTACCT 59.015 38.462 0.00 0.00 39.86 3.08
2888 3779 8.139989 GTGTAGTTTCTGACTTTCTGTTACCTA 58.860 37.037 0.00 0.00 39.86 3.08
3046 3937 5.989477 AGCTGAGCATAATGGTTGTACTTA 58.011 37.500 7.39 0.00 0.00 2.24
3174 4065 9.832445 AGTTGAAATACCTATACTTGTATGGTG 57.168 33.333 17.20 7.55 32.74 4.17
3175 4066 9.826574 GTTGAAATACCTATACTTGTATGGTGA 57.173 33.333 17.20 3.13 32.74 4.02
3176 4067 9.826574 TTGAAATACCTATACTTGTATGGTGAC 57.173 33.333 17.20 10.44 32.74 3.67
3219 4110 7.066766 GTCAATAGAATCCTGTTGCTGAAAGAT 59.933 37.037 0.00 0.00 40.14 2.40
3241 4132 4.717233 AAATCACACACACACACACAAT 57.283 36.364 0.00 0.00 0.00 2.71
3244 4135 5.826601 ATCACACACACACACACAATAAA 57.173 34.783 0.00 0.00 0.00 1.40
3246 4137 6.201226 TCACACACACACACACAATAAAAT 57.799 33.333 0.00 0.00 0.00 1.82
3247 4138 7.321745 TCACACACACACACACAATAAAATA 57.678 32.000 0.00 0.00 0.00 1.40
3248 4139 7.762382 TCACACACACACACACAATAAAATAA 58.238 30.769 0.00 0.00 0.00 1.40
3249 4140 8.244113 TCACACACACACACACAATAAAATAAA 58.756 29.630 0.00 0.00 0.00 1.40
3250 4141 8.864024 CACACACACACACACAATAAAATAAAA 58.136 29.630 0.00 0.00 0.00 1.52
3289 4181 9.148879 AGTGTTACATGCTTATCTATTAGAGGT 57.851 33.333 0.00 0.00 0.00 3.85
3305 4197 6.968131 TTAGAGGTCTTGAAACAATGATCG 57.032 37.500 0.00 0.00 0.00 3.69
3363 4303 9.840427 ACATTACTATGCATTCTGTTGTTTAAC 57.160 29.630 3.54 0.00 35.03 2.01
3374 4314 5.924356 TCTGTTGTTTAACCTCATGACTGA 58.076 37.500 0.00 0.00 35.92 3.41
3375 4315 5.758296 TCTGTTGTTTAACCTCATGACTGAC 59.242 40.000 0.00 0.00 35.92 3.51
3450 4390 6.442541 TGGAAAGAGTACCCACTTGAAATA 57.557 37.500 0.00 0.00 34.21 1.40
3806 4748 6.463995 TTATTGTGGAAAACTTCTGTTGCT 57.536 33.333 0.00 0.00 36.39 3.91
3818 4760 2.642427 TCTGTTGCTCTGCTTTGTTGA 58.358 42.857 0.00 0.00 0.00 3.18
3860 4802 2.665519 CGTGGCTTTTCATTTCCTCACG 60.666 50.000 0.00 0.00 40.14 4.35
3914 4856 7.639945 AGTGTTTGCAAGATTAGTTTGTCTAC 58.360 34.615 0.00 0.00 0.00 2.59
3932 4874 8.918202 TTGTCTACACATTCAACCTCTTTATT 57.082 30.769 0.00 0.00 30.55 1.40
4092 5034 0.681733 TGAAGACTGTGCTGGTCCTC 59.318 55.000 0.00 0.00 34.56 3.71
4134 5076 1.562672 GCAAGGAGGGCCTGAACCTA 61.563 60.000 12.95 0.00 46.28 3.08
4158 5100 2.700897 CGTAGTCCTTGGGATGATCCTT 59.299 50.000 11.87 0.00 36.57 3.36
4301 5243 5.754890 GTGGTGAGAAGTGATTTTTGCAATT 59.245 36.000 0.00 0.00 0.00 2.32
4359 5301 2.708216 TCTGGTGACACACAACACAT 57.292 45.000 8.08 0.00 41.68 3.21
4609 5552 6.089249 AGTTAAGGCCTTGTTTTGATCTTG 57.911 37.500 28.77 0.00 0.00 3.02
4695 5638 9.729281 TTATCGGGGTTTTATAGACCATATTTC 57.271 33.333 8.96 0.00 38.98 2.17
4696 5639 6.225318 TCGGGGTTTTATAGACCATATTTCG 58.775 40.000 8.96 0.00 38.98 3.46
4697 5640 5.106830 CGGGGTTTTATAGACCATATTTCGC 60.107 44.000 8.96 0.00 38.98 4.70
4699 5642 5.182570 GGGTTTTATAGACCATATTTCGCCC 59.817 44.000 8.96 0.00 38.98 6.13
4700 5643 5.766174 GGTTTTATAGACCATATTTCGCCCA 59.234 40.000 3.23 0.00 37.14 5.36
4716 5665 3.128415 TCGCCCAATCATGTTATTGTGTG 59.872 43.478 6.43 2.71 35.48 3.82
4723 5672 7.094420 CCCAATCATGTTATTGTGTGTACTTGA 60.094 37.037 6.43 0.00 35.48 3.02
4762 5711 0.106116 AGACGGTAGACATCTCCCCC 60.106 60.000 0.00 0.00 0.00 5.40
4764 5713 0.106116 ACGGTAGACATCTCCCCCTC 60.106 60.000 0.00 0.00 0.00 4.30
4784 5733 5.484290 CCCTCTTCTTTCTGGGAGTAGTAAA 59.516 44.000 0.00 0.00 42.11 2.01
4786 5735 6.022163 TCTTCTTTCTGGGAGTAGTAAACG 57.978 41.667 0.00 0.00 0.00 3.60
4796 5745 4.496507 GGGAGTAGTAAACGTCGGTGTATC 60.497 50.000 0.00 0.00 0.00 2.24
4797 5746 4.094887 GGAGTAGTAAACGTCGGTGTATCA 59.905 45.833 0.00 0.00 0.00 2.15
4798 5747 5.227238 AGTAGTAAACGTCGGTGTATCAG 57.773 43.478 0.00 0.00 0.00 2.90
4799 5748 4.697352 AGTAGTAAACGTCGGTGTATCAGT 59.303 41.667 0.00 0.00 0.00 3.41
4800 5749 3.829948 AGTAAACGTCGGTGTATCAGTG 58.170 45.455 0.00 0.00 0.00 3.66
4801 5750 2.806608 AAACGTCGGTGTATCAGTGT 57.193 45.000 0.00 0.00 0.00 3.55
4802 5751 3.921119 AAACGTCGGTGTATCAGTGTA 57.079 42.857 0.00 0.00 0.00 2.90
4803 5752 4.445452 AAACGTCGGTGTATCAGTGTAT 57.555 40.909 0.00 0.00 0.00 2.29
4835 5794 7.562135 TCCAAGGAAAGCTATATTTACGAACT 58.438 34.615 0.00 0.00 0.00 3.01
4867 5829 5.352284 TGGACACGTTTATTGCAATTGTTT 58.648 33.333 18.75 4.85 0.00 2.83
4868 5830 6.504398 TGGACACGTTTATTGCAATTGTTTA 58.496 32.000 18.75 5.86 0.00 2.01
4869 5831 6.638873 TGGACACGTTTATTGCAATTGTTTAG 59.361 34.615 18.75 7.09 0.00 1.85
4870 5832 6.639279 GGACACGTTTATTGCAATTGTTTAGT 59.361 34.615 18.75 10.23 0.00 2.24
4871 5833 7.149031 GGACACGTTTATTGCAATTGTTTAGTC 60.149 37.037 18.75 17.38 0.00 2.59
4872 5834 7.197017 ACACGTTTATTGCAATTGTTTAGTCA 58.803 30.769 18.75 0.00 0.00 3.41
4873 5835 7.865385 ACACGTTTATTGCAATTGTTTAGTCAT 59.135 29.630 18.75 0.00 0.00 3.06
4874 5836 8.365210 CACGTTTATTGCAATTGTTTAGTCATC 58.635 33.333 18.75 0.00 0.00 2.92
4875 5837 7.270365 ACGTTTATTGCAATTGTTTAGTCATCG 59.730 33.333 18.75 6.87 0.00 3.84
4876 5838 7.480229 CGTTTATTGCAATTGTTTAGTCATCGA 59.520 33.333 18.75 0.00 0.00 3.59
4877 5839 9.123709 GTTTATTGCAATTGTTTAGTCATCGAA 57.876 29.630 18.75 0.00 0.00 3.71
4878 5840 8.667987 TTATTGCAATTGTTTAGTCATCGAAC 57.332 30.769 18.75 0.00 0.00 3.95
4879 5841 5.681337 TGCAATTGTTTAGTCATCGAACA 57.319 34.783 7.40 0.00 0.00 3.18
4880 5842 6.252967 TGCAATTGTTTAGTCATCGAACAT 57.747 33.333 7.40 0.00 33.73 2.71
4881 5843 6.676950 TGCAATTGTTTAGTCATCGAACATT 58.323 32.000 7.40 0.00 33.73 2.71
4882 5844 7.144661 TGCAATTGTTTAGTCATCGAACATTT 58.855 30.769 7.40 0.00 33.73 2.32
4883 5845 7.651304 TGCAATTGTTTAGTCATCGAACATTTT 59.349 29.630 7.40 0.00 33.73 1.82
4884 5846 8.487176 GCAATTGTTTAGTCATCGAACATTTTT 58.513 29.630 7.40 0.00 33.73 1.94
4889 5851 9.872757 TGTTTAGTCATCGAACATTTTTAGAAC 57.127 29.630 0.00 0.00 0.00 3.01
4890 5852 9.037417 GTTTAGTCATCGAACATTTTTAGAACG 57.963 33.333 0.00 0.00 0.00 3.95
4891 5853 5.618561 AGTCATCGAACATTTTTAGAACGC 58.381 37.500 0.00 0.00 0.00 4.84
4892 5854 5.178623 AGTCATCGAACATTTTTAGAACGCA 59.821 36.000 0.00 0.00 0.00 5.24
4893 5855 5.504755 GTCATCGAACATTTTTAGAACGCAG 59.495 40.000 0.00 0.00 0.00 5.18
4894 5856 5.407084 TCATCGAACATTTTTAGAACGCAGA 59.593 36.000 0.00 0.00 0.00 4.26
4895 5857 5.660629 TCGAACATTTTTAGAACGCAGAA 57.339 34.783 0.00 0.00 0.00 3.02
4896 5858 6.050454 TCGAACATTTTTAGAACGCAGAAA 57.950 33.333 0.00 0.00 0.00 2.52
4897 5859 6.664515 TCGAACATTTTTAGAACGCAGAAAT 58.335 32.000 0.00 0.00 0.00 2.17
4898 5860 7.136119 TCGAACATTTTTAGAACGCAGAAATT 58.864 30.769 0.00 0.00 0.00 1.82
4899 5861 7.646130 TCGAACATTTTTAGAACGCAGAAATTT 59.354 29.630 0.00 0.00 0.00 1.82
4900 5862 8.897809 CGAACATTTTTAGAACGCAGAAATTTA 58.102 29.630 0.00 0.00 0.00 1.40
4922 5884 8.696410 TTTATTAAAGATCATTTTGTTCCCGC 57.304 30.769 0.00 0.00 0.00 6.13
4923 5885 5.713792 TTAAAGATCATTTTGTTCCCGCA 57.286 34.783 0.00 0.00 0.00 5.69
4924 5886 4.806640 AAAGATCATTTTGTTCCCGCAT 57.193 36.364 0.00 0.00 0.00 4.73
4925 5887 3.788333 AGATCATTTTGTTCCCGCATG 57.212 42.857 0.00 0.00 0.00 4.06
4926 5888 3.091545 AGATCATTTTGTTCCCGCATGT 58.908 40.909 0.00 0.00 0.00 3.21
4927 5889 3.129287 AGATCATTTTGTTCCCGCATGTC 59.871 43.478 0.00 0.00 0.00 3.06
4928 5890 1.543802 TCATTTTGTTCCCGCATGTCC 59.456 47.619 0.00 0.00 0.00 4.02
4929 5891 0.894835 ATTTTGTTCCCGCATGTCCC 59.105 50.000 0.00 0.00 0.00 4.46
4930 5892 0.178975 TTTTGTTCCCGCATGTCCCT 60.179 50.000 0.00 0.00 0.00 4.20
4931 5893 0.693622 TTTGTTCCCGCATGTCCCTA 59.306 50.000 0.00 0.00 0.00 3.53
4932 5894 0.916086 TTGTTCCCGCATGTCCCTAT 59.084 50.000 0.00 0.00 0.00 2.57
4933 5895 1.796017 TGTTCCCGCATGTCCCTATA 58.204 50.000 0.00 0.00 0.00 1.31
4934 5896 2.334977 TGTTCCCGCATGTCCCTATAT 58.665 47.619 0.00 0.00 0.00 0.86
4935 5897 2.038426 TGTTCCCGCATGTCCCTATATG 59.962 50.000 0.00 0.00 0.00 1.78
4936 5898 2.024176 TCCCGCATGTCCCTATATGT 57.976 50.000 0.00 0.00 0.00 2.29
4937 5899 1.899814 TCCCGCATGTCCCTATATGTC 59.100 52.381 0.00 0.00 0.00 3.06
4938 5900 1.066143 CCCGCATGTCCCTATATGTCC 60.066 57.143 0.00 0.00 0.00 4.02
4939 5901 1.404181 CCGCATGTCCCTATATGTCCG 60.404 57.143 0.00 0.00 0.00 4.79
4940 5902 1.272490 CGCATGTCCCTATATGTCCGT 59.728 52.381 0.00 0.00 0.00 4.69
4941 5903 2.688507 GCATGTCCCTATATGTCCGTG 58.311 52.381 0.00 0.00 0.00 4.94
4942 5904 2.612972 GCATGTCCCTATATGTCCGTGG 60.613 54.545 0.00 0.00 0.00 4.94
4943 5905 2.759839 TGTCCCTATATGTCCGTGGA 57.240 50.000 0.00 0.00 0.00 4.02
4944 5906 2.313317 TGTCCCTATATGTCCGTGGAC 58.687 52.381 12.17 12.17 44.77 4.02
4966 5928 3.387947 ACCGCCGGTCACCCTTAG 61.388 66.667 1.02 0.00 0.00 2.18
4967 5929 3.387947 CCGCCGGTCACCCTTAGT 61.388 66.667 1.90 0.00 0.00 2.24
4968 5930 2.053865 CCGCCGGTCACCCTTAGTA 61.054 63.158 1.90 0.00 0.00 1.82
4969 5931 1.397390 CCGCCGGTCACCCTTAGTAT 61.397 60.000 1.90 0.00 0.00 2.12
4970 5932 0.249322 CGCCGGTCACCCTTAGTATG 60.249 60.000 1.90 0.00 0.00 2.39
4971 5933 0.106149 GCCGGTCACCCTTAGTATGG 59.894 60.000 1.90 0.00 0.00 2.74
4972 5934 1.784358 CCGGTCACCCTTAGTATGGA 58.216 55.000 3.63 0.00 0.00 3.41
4973 5935 1.687123 CCGGTCACCCTTAGTATGGAG 59.313 57.143 3.63 0.00 0.00 3.86
4974 5936 2.385803 CGGTCACCCTTAGTATGGAGT 58.614 52.381 3.63 0.00 0.00 3.85
4975 5937 2.764572 CGGTCACCCTTAGTATGGAGTT 59.235 50.000 3.63 0.00 0.00 3.01
4976 5938 3.197116 CGGTCACCCTTAGTATGGAGTTT 59.803 47.826 3.63 0.00 0.00 2.66
4977 5939 4.514401 GGTCACCCTTAGTATGGAGTTTG 58.486 47.826 3.63 0.00 0.00 2.93
4978 5940 4.514401 GTCACCCTTAGTATGGAGTTTGG 58.486 47.826 3.63 0.00 0.00 3.28
4979 5941 4.224370 GTCACCCTTAGTATGGAGTTTGGA 59.776 45.833 3.63 0.00 0.00 3.53
4980 5942 4.847512 TCACCCTTAGTATGGAGTTTGGAA 59.152 41.667 3.63 0.00 0.00 3.53
4981 5943 5.311121 TCACCCTTAGTATGGAGTTTGGAAA 59.689 40.000 3.63 0.00 0.00 3.13
4982 5944 6.011981 TCACCCTTAGTATGGAGTTTGGAAAT 60.012 38.462 3.63 0.00 0.00 2.17
4983 5945 7.183112 TCACCCTTAGTATGGAGTTTGGAAATA 59.817 37.037 3.63 0.00 0.00 1.40
4984 5946 7.998964 CACCCTTAGTATGGAGTTTGGAAATAT 59.001 37.037 3.63 0.00 0.00 1.28
4985 5947 8.566109 ACCCTTAGTATGGAGTTTGGAAATATT 58.434 33.333 3.63 0.00 0.00 1.28
4986 5948 9.421399 CCCTTAGTATGGAGTTTGGAAATATTT 57.579 33.333 0.00 0.00 0.00 1.40
4991 5953 9.927081 AGTATGGAGTTTGGAAATATTTCATCT 57.073 29.630 25.55 17.43 38.92 2.90
4993 5955 7.645058 TGGAGTTTGGAAATATTTCATCTCC 57.355 36.000 28.80 28.80 39.09 3.71
4994 5956 6.607198 TGGAGTTTGGAAATATTTCATCTCCC 59.393 38.462 30.23 22.86 38.58 4.30
4995 5957 6.836007 GGAGTTTGGAAATATTTCATCTCCCT 59.164 38.462 27.28 17.90 38.92 4.20
4996 5958 7.013750 GGAGTTTGGAAATATTTCATCTCCCTC 59.986 40.741 27.28 21.93 38.92 4.30
4997 5959 7.413446 AGTTTGGAAATATTTCATCTCCCTCA 58.587 34.615 25.55 11.61 38.92 3.86
4998 5960 7.559170 AGTTTGGAAATATTTCATCTCCCTCAG 59.441 37.037 25.55 0.00 38.92 3.35
4999 5961 6.581388 TGGAAATATTTCATCTCCCTCAGT 57.419 37.500 25.55 0.00 38.92 3.41
5000 5962 7.690454 TGGAAATATTTCATCTCCCTCAGTA 57.310 36.000 25.55 0.00 38.92 2.74
5001 5963 8.280258 TGGAAATATTTCATCTCCCTCAGTAT 57.720 34.615 25.55 0.00 38.92 2.12
5002 5964 8.159447 TGGAAATATTTCATCTCCCTCAGTATG 58.841 37.037 25.55 0.00 38.92 2.39
5003 5965 7.609532 GGAAATATTTCATCTCCCTCAGTATGG 59.390 40.741 25.55 0.00 38.92 2.74
5004 5966 7.878621 AATATTTCATCTCCCTCAGTATGGA 57.121 36.000 0.00 0.00 36.16 3.41
5006 5968 3.981516 TCATCTCCCTCAGTATGGAGT 57.018 47.619 5.53 0.00 46.76 3.85
5007 5969 4.271807 TCATCTCCCTCAGTATGGAGTT 57.728 45.455 5.53 0.00 46.76 3.01
5008 5970 4.624913 TCATCTCCCTCAGTATGGAGTTT 58.375 43.478 5.53 0.00 46.76 2.66
5009 5971 4.406972 TCATCTCCCTCAGTATGGAGTTTG 59.593 45.833 5.53 5.50 46.76 2.93
5010 5972 3.791320 TCTCCCTCAGTATGGAGTTTGT 58.209 45.455 5.53 0.00 46.76 2.83
5011 5973 3.515502 TCTCCCTCAGTATGGAGTTTGTG 59.484 47.826 5.53 0.00 46.76 3.33
5012 5974 2.571653 TCCCTCAGTATGGAGTTTGTGG 59.428 50.000 0.00 0.00 36.16 4.17
5013 5975 2.359900 CCTCAGTATGGAGTTTGTGGC 58.640 52.381 0.00 0.00 36.16 5.01
5014 5976 2.290260 CCTCAGTATGGAGTTTGTGGCA 60.290 50.000 0.00 0.00 36.16 4.92
5015 5977 2.744202 CTCAGTATGGAGTTTGTGGCAC 59.256 50.000 11.55 11.55 36.16 5.01
5016 5978 1.812571 CAGTATGGAGTTTGTGGCACC 59.187 52.381 16.26 0.00 0.00 5.01
5017 5979 1.423541 AGTATGGAGTTTGTGGCACCA 59.576 47.619 16.26 4.78 35.09 4.17
5018 5980 2.041620 AGTATGGAGTTTGTGGCACCAT 59.958 45.455 16.26 12.43 42.76 3.55
5019 5981 2.014010 ATGGAGTTTGTGGCACCATT 57.986 45.000 16.26 0.00 38.01 3.16
5020 5982 2.666272 TGGAGTTTGTGGCACCATTA 57.334 45.000 16.26 0.00 0.00 1.90
5021 5983 3.168035 TGGAGTTTGTGGCACCATTAT 57.832 42.857 16.26 0.00 0.00 1.28
5022 5984 3.505386 TGGAGTTTGTGGCACCATTATT 58.495 40.909 16.26 0.00 0.00 1.40
5023 5985 3.509575 TGGAGTTTGTGGCACCATTATTC 59.490 43.478 16.26 5.40 0.00 1.75
5024 5986 3.509575 GGAGTTTGTGGCACCATTATTCA 59.490 43.478 16.26 0.00 0.00 2.57
5025 5987 4.485163 GAGTTTGTGGCACCATTATTCAC 58.515 43.478 16.26 0.00 0.00 3.18
5026 5988 3.894427 AGTTTGTGGCACCATTATTCACA 59.106 39.130 16.26 0.00 36.68 3.58
5027 5989 4.343526 AGTTTGTGGCACCATTATTCACAA 59.656 37.500 16.26 0.00 43.67 3.33
5028 5990 4.517952 TTGTGGCACCATTATTCACAAG 57.482 40.909 16.26 0.00 41.51 3.16
5029 5991 2.824936 TGTGGCACCATTATTCACAAGG 59.175 45.455 16.26 0.00 35.72 3.61
5030 5992 1.824230 TGGCACCATTATTCACAAGGC 59.176 47.619 0.00 0.00 0.00 4.35
5031 5993 1.824230 GGCACCATTATTCACAAGGCA 59.176 47.619 0.00 0.00 0.00 4.75
5032 5994 2.431782 GGCACCATTATTCACAAGGCAT 59.568 45.455 0.00 0.00 0.00 4.40
5033 5995 3.636300 GGCACCATTATTCACAAGGCATA 59.364 43.478 0.00 0.00 0.00 3.14
5034 5996 4.099266 GGCACCATTATTCACAAGGCATAA 59.901 41.667 0.00 0.00 0.00 1.90
5035 5997 5.221501 GGCACCATTATTCACAAGGCATAAT 60.222 40.000 0.00 0.00 0.00 1.28
5036 5998 6.282930 GCACCATTATTCACAAGGCATAATT 58.717 36.000 0.00 0.00 0.00 1.40
5037 5999 6.421801 GCACCATTATTCACAAGGCATAATTC 59.578 38.462 0.00 0.00 0.00 2.17
5038 6000 6.925165 CACCATTATTCACAAGGCATAATTCC 59.075 38.462 0.00 0.00 0.00 3.01
5039 6001 6.840705 ACCATTATTCACAAGGCATAATTCCT 59.159 34.615 0.00 0.00 34.90 3.36
5042 6004 8.636213 CATTATTCACAAGGCATAATTCCTCTT 58.364 33.333 0.00 0.00 32.45 2.85
5079 6041 8.573885 CATATGTGACAATTGAGGATGCTTTAT 58.426 33.333 13.59 0.00 0.00 1.40
5139 6101 8.271312 TCGAGATATCCGTAAAAATGGTTTTT 57.729 30.769 11.65 5.81 44.43 1.94
5219 6181 5.067153 CGGATATGGCAAAAAGGTACATGAA 59.933 40.000 0.00 0.00 0.00 2.57
5313 6275 8.502161 AGTAATTTTTCAGAATGTTAACGCAC 57.498 30.769 0.26 0.00 37.40 5.34
5333 6295 0.327924 TCCAAACCTGGCATGATCGT 59.672 50.000 0.00 0.00 43.17 3.73
5501 6463 5.335191 CCTCAAAATACAAGCTGAACCACTC 60.335 44.000 0.00 0.00 0.00 3.51
5589 6551 4.761739 GGTCTTTCATGGTTCTGATTGACA 59.238 41.667 0.00 0.00 33.33 3.58
5679 6641 4.510038 CAAGTCATTAAGTTGCAAGCCT 57.490 40.909 0.00 0.00 31.74 4.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 8.661257 CCGGGCCTAAAAATAACTTTTTAAATG 58.339 33.333 0.84 0.00 42.99 2.32
4 5 7.825270 CCCGGGCCTAAAAATAACTTTTTAAAT 59.175 33.333 8.08 0.00 42.99 1.40
5 6 7.015974 TCCCGGGCCTAAAAATAACTTTTTAAA 59.984 33.333 18.49 0.00 42.99 1.52
6 7 6.496218 TCCCGGGCCTAAAAATAACTTTTTAA 59.504 34.615 18.49 0.00 42.99 1.52
7 8 6.015282 TCCCGGGCCTAAAAATAACTTTTTA 58.985 36.000 18.49 3.93 41.59 1.52
8 9 4.839550 TCCCGGGCCTAAAAATAACTTTTT 59.160 37.500 18.49 2.12 44.61 1.94
10 11 4.021229 CTCCCGGGCCTAAAAATAACTTT 58.979 43.478 18.49 0.00 0.00 2.66
11 12 3.628008 CTCCCGGGCCTAAAAATAACTT 58.372 45.455 18.49 0.00 0.00 2.66
12 13 2.685819 GCTCCCGGGCCTAAAAATAACT 60.686 50.000 18.49 0.00 0.00 2.24
13 14 1.679680 GCTCCCGGGCCTAAAAATAAC 59.320 52.381 18.49 0.00 0.00 1.89
14 15 1.285373 TGCTCCCGGGCCTAAAAATAA 59.715 47.619 18.49 0.00 0.00 1.40
15 16 0.920438 TGCTCCCGGGCCTAAAAATA 59.080 50.000 18.49 0.00 0.00 1.40
16 17 0.683179 GTGCTCCCGGGCCTAAAAAT 60.683 55.000 18.49 0.00 0.00 1.82
17 18 1.303806 GTGCTCCCGGGCCTAAAAA 60.304 57.895 18.49 0.00 0.00 1.94
18 19 2.353573 GTGCTCCCGGGCCTAAAA 59.646 61.111 18.49 0.00 0.00 1.52
19 20 4.090588 CGTGCTCCCGGGCCTAAA 62.091 66.667 18.49 0.00 0.00 1.85
33 34 4.436998 GACTCCCGGGAGCACGTG 62.437 72.222 44.15 25.23 45.54 4.49
36 37 2.240162 AATTCGACTCCCGGGAGCAC 62.240 60.000 44.15 35.16 45.54 4.40
37 38 1.987855 AATTCGACTCCCGGGAGCA 60.988 57.895 44.15 28.36 45.54 4.26
38 39 1.521681 CAATTCGACTCCCGGGAGC 60.522 63.158 44.15 34.21 45.54 4.70
39 40 0.535335 TTCAATTCGACTCCCGGGAG 59.465 55.000 42.92 42.92 46.91 4.30
40 41 1.200519 ATTCAATTCGACTCCCGGGA 58.799 50.000 25.06 25.06 39.14 5.14
41 42 2.038387 AATTCAATTCGACTCCCGGG 57.962 50.000 16.85 16.85 39.14 5.73
42 43 3.063997 CAGAAATTCAATTCGACTCCCGG 59.936 47.826 0.00 0.00 39.14 5.73
43 44 3.932710 TCAGAAATTCAATTCGACTCCCG 59.067 43.478 0.00 0.00 40.25 5.14
44 45 5.880054 TTCAGAAATTCAATTCGACTCCC 57.120 39.130 0.00 0.00 34.46 4.30
45 46 7.589221 GCATATTCAGAAATTCAATTCGACTCC 59.411 37.037 0.00 0.00 34.46 3.85
46 47 8.124823 TGCATATTCAGAAATTCAATTCGACTC 58.875 33.333 0.00 0.00 34.46 3.36
47 48 7.912250 GTGCATATTCAGAAATTCAATTCGACT 59.088 33.333 0.00 0.00 34.46 4.18
48 49 7.166473 GGTGCATATTCAGAAATTCAATTCGAC 59.834 37.037 0.00 0.00 34.46 4.20
49 50 7.148103 TGGTGCATATTCAGAAATTCAATTCGA 60.148 33.333 0.00 0.00 34.46 3.71
50 51 6.974048 TGGTGCATATTCAGAAATTCAATTCG 59.026 34.615 0.00 0.00 34.46 3.34
51 52 8.882415 ATGGTGCATATTCAGAAATTCAATTC 57.118 30.769 0.00 0.00 0.00 2.17
56 57 9.546909 CGTTATATGGTGCATATTCAGAAATTC 57.453 33.333 0.00 0.00 38.00 2.17
57 58 9.283768 TCGTTATATGGTGCATATTCAGAAATT 57.716 29.630 0.00 0.00 38.00 1.82
58 59 8.846943 TCGTTATATGGTGCATATTCAGAAAT 57.153 30.769 0.00 0.00 38.00 2.17
59 60 8.846943 ATCGTTATATGGTGCATATTCAGAAA 57.153 30.769 0.00 0.00 38.00 2.52
60 61 9.936759 TTATCGTTATATGGTGCATATTCAGAA 57.063 29.630 0.00 0.00 38.00 3.02
61 62 9.936759 TTTATCGTTATATGGTGCATATTCAGA 57.063 29.630 0.00 0.00 38.00 3.27
62 63 9.973246 GTTTATCGTTATATGGTGCATATTCAG 57.027 33.333 0.00 0.00 38.00 3.02
63 64 9.495572 TGTTTATCGTTATATGGTGCATATTCA 57.504 29.630 0.00 0.00 38.00 2.57
169 176 5.294552 GGAAGATATTTCAGACCCGAAACAG 59.705 44.000 0.00 0.00 37.69 3.16
197 204 2.167693 TGCAGAGGGTAGACAATAACCG 59.832 50.000 0.00 0.00 36.57 4.44
233 240 3.451894 CAGCCAACAATCGCCCCC 61.452 66.667 0.00 0.00 0.00 5.40
235 242 2.830186 TACCCAGCCAACAATCGCCC 62.830 60.000 0.00 0.00 0.00 6.13
240 247 0.035439 CCGTCTACCCAGCCAACAAT 60.035 55.000 0.00 0.00 0.00 2.71
263 270 3.746949 CTCAGGGATCAGCGTGGGC 62.747 68.421 0.00 0.00 40.37 5.36
266 273 1.039785 TCTCCTCAGGGATCAGCGTG 61.040 60.000 0.00 0.00 41.36 5.34
273 280 3.710677 CACTCTTCATTCTCCTCAGGGAT 59.289 47.826 0.00 0.00 41.36 3.85
287 294 2.636412 CGACCTCCCGCACTCTTCA 61.636 63.158 0.00 0.00 0.00 3.02
352 406 2.193517 CCACGTTTCACCCCACCA 59.806 61.111 0.00 0.00 0.00 4.17
354 408 1.895231 GGACCACGTTTCACCCCAC 60.895 63.158 0.00 0.00 0.00 4.61
453 511 7.414436 CCTTTGTTTTCTTTGTCTGTATCGAA 58.586 34.615 0.00 0.00 0.00 3.71
469 527 2.949644 CTCCGACAACTCCCTTTGTTTT 59.050 45.455 0.00 0.00 39.88 2.43
505 563 6.959639 AGAATTAGCCACACAAAGAAAAGA 57.040 33.333 0.00 0.00 0.00 2.52
553 612 9.045745 ACATATGGTAAGTTTCATCCCAAAAAT 57.954 29.630 7.80 0.00 0.00 1.82
613 1489 4.869861 ACCAAGTTTGTTTTGCATCAGAAC 59.130 37.500 0.00 0.00 0.00 3.01
667 1543 1.895798 TCACTTCTCACTCCAAGCGAT 59.104 47.619 0.00 0.00 0.00 4.58
695 1571 3.233507 TGAACGTCCTGTTAGGGTTACT 58.766 45.455 0.00 0.00 42.09 2.24
729 1605 4.458397 AGAGGAATATGCAAGGTGTCATG 58.542 43.478 0.00 0.00 0.00 3.07
782 1658 2.681344 GGTTTTCGTGAAGGTGACAAGT 59.319 45.455 0.00 0.00 0.00 3.16
873 1749 0.503961 GTGCACGCATTTTTGTGAGC 59.496 50.000 0.00 2.64 38.36 4.26
981 1857 2.603652 GGTTTCTTCCTCGCCCCCT 61.604 63.158 0.00 0.00 0.00 4.79
1267 2147 1.599797 CAACTCCACACCCCGGAAC 60.600 63.158 0.73 0.00 30.33 3.62
1312 2192 2.721167 CGGATGCTCCTCCACGGAA 61.721 63.158 0.00 0.00 42.53 4.30
1377 2258 1.275291 GCTCTGCTACACACAACCCTA 59.725 52.381 0.00 0.00 0.00 3.53
1480 2361 1.294068 TCCTAGCCCAGTAATCCACCT 59.706 52.381 0.00 0.00 0.00 4.00
1574 2457 0.602106 CCGGATGCAGCTACTCATGG 60.602 60.000 0.22 0.00 0.00 3.66
1615 2498 2.557920 ACTGTTTCCTTCTGCTCCAG 57.442 50.000 0.00 0.00 0.00 3.86
1616 2499 2.303022 CCTACTGTTTCCTTCTGCTCCA 59.697 50.000 0.00 0.00 0.00 3.86
1645 2528 8.069574 TCTGAACGCAATTAGCAACATATAATG 58.930 33.333 0.00 0.00 46.13 1.90
1648 2531 7.406553 GTTCTGAACGCAATTAGCAACATATA 58.593 34.615 4.57 0.00 46.13 0.86
1680 2563 6.872020 GCACACTACTACAATTTACCTGAGAA 59.128 38.462 0.00 0.00 0.00 2.87
1681 2564 6.395629 GCACACTACTACAATTTACCTGAGA 58.604 40.000 0.00 0.00 0.00 3.27
1811 2694 3.954258 GCCCAGGATTTAACTGCAGTAAT 59.046 43.478 22.01 17.12 34.65 1.89
1873 2756 4.756642 TCAAATCAACACTTGGTGAGCTAG 59.243 41.667 2.92 0.00 46.01 3.42
2103 2986 6.272318 TGCCAAAAGTAAAGAACAAGATGTG 58.728 36.000 0.00 0.00 0.00 3.21
2162 3045 9.730705 TGAAGTCAGACAGAAATTGAAAGATAT 57.269 29.630 2.66 0.00 0.00 1.63
2294 3177 4.330620 GCATGGAATTTGCAGTACCAATTG 59.669 41.667 0.00 0.00 39.90 2.32
2435 3320 3.071874 TGCCTAACAGTCAAATCCCTG 57.928 47.619 0.00 0.00 34.82 4.45
3126 4017 8.511321 CAACTTACATATTGTTGGAAAGCTGTA 58.489 33.333 0.00 0.00 37.85 2.74
3166 4057 6.609616 TGGAAGACATATACAGTCACCATACA 59.390 38.462 15.34 4.10 38.64 2.29
3167 4058 7.050970 TGGAAGACATATACAGTCACCATAC 57.949 40.000 15.34 2.35 38.64 2.39
3168 4059 7.344612 ACTTGGAAGACATATACAGTCACCATA 59.655 37.037 17.79 12.07 40.99 2.74
3169 4060 6.156949 ACTTGGAAGACATATACAGTCACCAT 59.843 38.462 17.79 8.69 40.99 3.55
3170 4061 5.483937 ACTTGGAAGACATATACAGTCACCA 59.516 40.000 15.34 15.34 40.29 4.17
3172 4063 6.631016 TGACTTGGAAGACATATACAGTCAC 58.369 40.000 9.18 3.97 38.46 3.67
3174 4065 9.469807 CTATTGACTTGGAAGACATATACAGTC 57.530 37.037 0.00 0.04 36.26 3.51
3175 4066 9.201989 TCTATTGACTTGGAAGACATATACAGT 57.798 33.333 0.00 0.00 31.28 3.55
3219 4110 5.826601 ATTGTGTGTGTGTGTGTGATTTA 57.173 34.783 0.00 0.00 0.00 1.40
3289 4181 7.201644 GCCTCTTATTCGATCATTGTTTCAAGA 60.202 37.037 0.00 0.00 0.00 3.02
3344 4254 7.392953 TCATGAGGTTAAACAACAGAATGCATA 59.607 33.333 0.00 0.00 42.53 3.14
3363 4303 7.621428 AATCAAATAACAGTCAGTCATGAGG 57.379 36.000 0.00 0.00 35.66 3.86
3374 4314 6.813152 GGCAGCAAACATAATCAAATAACAGT 59.187 34.615 0.00 0.00 0.00 3.55
3375 4315 6.812656 TGGCAGCAAACATAATCAAATAACAG 59.187 34.615 0.00 0.00 0.00 3.16
3495 4435 0.811915 TCAGAGAGTACTTCCGCTGC 59.188 55.000 9.56 0.00 31.98 5.25
3720 4660 6.588719 AGCAAACATAAACCAGCTAATCAA 57.411 33.333 0.00 0.00 0.00 2.57
3722 4662 7.985476 TCTAAGCAAACATAAACCAGCTAATC 58.015 34.615 0.00 0.00 0.00 1.75
3723 4663 7.829211 TCTCTAAGCAAACATAAACCAGCTAAT 59.171 33.333 0.00 0.00 0.00 1.73
3806 4748 9.453572 ACTAAATATGAGATTCAACAAAGCAGA 57.546 29.630 0.00 0.00 0.00 4.26
3818 4760 8.345565 GCCACGAATTCAACTAAATATGAGATT 58.654 33.333 6.22 0.00 0.00 2.40
3839 4781 2.665519 CGTGAGGAAATGAAAAGCCACG 60.666 50.000 0.00 0.00 39.74 4.94
3860 4802 7.891183 TCAAAATTCTAGTCAAGCTAGTCAC 57.109 36.000 0.00 0.00 45.65 3.67
3886 4828 8.682710 AGACAAACTAATCTTGCAAACACTAAA 58.317 29.630 0.00 0.00 0.00 1.85
3914 4856 9.132521 GATGACAAAATAAAGAGGTTGAATGTG 57.867 33.333 0.00 0.00 0.00 3.21
4092 5034 4.022503 CCAAAGAAGAGAAAGCCAAGGAAG 60.023 45.833 0.00 0.00 0.00 3.46
4134 5076 1.933021 TCATCCCAAGGACTACGTGT 58.067 50.000 0.00 0.00 32.98 4.49
4158 5100 2.821378 CCACATCATTCCAAGAACAGCA 59.179 45.455 0.00 0.00 0.00 4.41
4301 5243 3.585020 CACGCACTGCAGTTGCCA 61.585 61.111 25.45 0.00 41.18 4.92
4359 5301 1.996798 ACCAGACTGTCTTCCTTCGA 58.003 50.000 7.77 0.00 0.00 3.71
4609 5552 6.097839 TCCTAATGTGTAGTCCATACTTCCAC 59.902 42.308 0.00 0.00 37.15 4.02
4695 5638 3.119531 ACACACAATAACATGATTGGGCG 60.120 43.478 8.83 3.26 42.92 6.13
4696 5639 4.454728 ACACACAATAACATGATTGGGC 57.545 40.909 8.83 0.00 42.92 5.36
4697 5640 6.757897 AGTACACACAATAACATGATTGGG 57.242 37.500 0.00 3.53 44.40 4.12
4723 5672 9.256228 ACCGTCTGTGTATCAGGAAATATATAT 57.744 33.333 0.00 0.00 43.76 0.86
4750 5699 2.959421 AAGAAGAGGGGGAGATGTCT 57.041 50.000 0.00 0.00 0.00 3.41
4762 5711 6.094061 CGTTTACTACTCCCAGAAAGAAGAG 58.906 44.000 0.00 0.00 0.00 2.85
4764 5713 5.780984 ACGTTTACTACTCCCAGAAAGAAG 58.219 41.667 0.00 0.00 0.00 2.85
4784 5733 2.479049 GCATACACTGATACACCGACGT 60.479 50.000 0.00 0.00 0.00 4.34
4786 5735 3.159353 TGCATACACTGATACACCGAC 57.841 47.619 0.00 0.00 0.00 4.79
4796 5745 3.877559 TCCTTGGAGATTGCATACACTG 58.122 45.455 0.00 0.00 0.00 3.66
4797 5746 4.574674 TTCCTTGGAGATTGCATACACT 57.425 40.909 0.00 0.00 0.00 3.55
4798 5747 4.439289 GCTTTCCTTGGAGATTGCATACAC 60.439 45.833 0.00 0.00 0.00 2.90
4799 5748 3.696051 GCTTTCCTTGGAGATTGCATACA 59.304 43.478 0.00 0.00 0.00 2.29
4800 5749 3.950395 AGCTTTCCTTGGAGATTGCATAC 59.050 43.478 0.00 0.00 0.00 2.39
4801 5750 4.240881 AGCTTTCCTTGGAGATTGCATA 57.759 40.909 0.00 0.00 0.00 3.14
4802 5751 3.097342 AGCTTTCCTTGGAGATTGCAT 57.903 42.857 0.00 0.00 0.00 3.96
4803 5752 2.592102 AGCTTTCCTTGGAGATTGCA 57.408 45.000 0.00 0.00 0.00 4.08
4835 5794 8.214721 TGCAATAAACGTGTCCATATGATTTA 57.785 30.769 3.65 0.51 0.00 1.40
4867 5829 6.366604 TGCGTTCTAAAAATGTTCGATGACTA 59.633 34.615 0.00 0.00 0.00 2.59
4868 5830 5.178623 TGCGTTCTAAAAATGTTCGATGACT 59.821 36.000 0.00 0.00 0.00 3.41
4869 5831 5.379003 TGCGTTCTAAAAATGTTCGATGAC 58.621 37.500 0.00 0.00 0.00 3.06
4870 5832 5.407084 TCTGCGTTCTAAAAATGTTCGATGA 59.593 36.000 0.00 0.00 0.00 2.92
4871 5833 5.617609 TCTGCGTTCTAAAAATGTTCGATG 58.382 37.500 0.00 0.00 0.00 3.84
4872 5834 5.856126 TCTGCGTTCTAAAAATGTTCGAT 57.144 34.783 0.00 0.00 0.00 3.59
4873 5835 5.660629 TTCTGCGTTCTAAAAATGTTCGA 57.339 34.783 0.00 0.00 0.00 3.71
4874 5836 6.911484 ATTTCTGCGTTCTAAAAATGTTCG 57.089 33.333 0.00 0.00 0.00 3.95
4896 5858 9.313118 GCGGGAACAAAATGATCTTTAATAAAT 57.687 29.630 0.00 0.00 0.00 1.40
4897 5859 8.307483 TGCGGGAACAAAATGATCTTTAATAAA 58.693 29.630 0.00 0.00 0.00 1.40
4898 5860 7.831753 TGCGGGAACAAAATGATCTTTAATAA 58.168 30.769 0.00 0.00 0.00 1.40
4899 5861 7.397892 TGCGGGAACAAAATGATCTTTAATA 57.602 32.000 0.00 0.00 0.00 0.98
4900 5862 6.279513 TGCGGGAACAAAATGATCTTTAAT 57.720 33.333 0.00 0.00 0.00 1.40
4901 5863 5.713792 TGCGGGAACAAAATGATCTTTAA 57.286 34.783 0.00 0.00 0.00 1.52
4902 5864 5.184864 ACATGCGGGAACAAAATGATCTTTA 59.815 36.000 0.00 0.00 0.00 1.85
4903 5865 4.021192 ACATGCGGGAACAAAATGATCTTT 60.021 37.500 0.00 0.00 0.00 2.52
4904 5866 3.511146 ACATGCGGGAACAAAATGATCTT 59.489 39.130 0.00 0.00 0.00 2.40
4905 5867 3.091545 ACATGCGGGAACAAAATGATCT 58.908 40.909 0.00 0.00 0.00 2.75
4906 5868 3.438360 GACATGCGGGAACAAAATGATC 58.562 45.455 0.00 0.00 0.00 2.92
4907 5869 2.166254 GGACATGCGGGAACAAAATGAT 59.834 45.455 0.00 0.00 0.00 2.45
4908 5870 1.543802 GGACATGCGGGAACAAAATGA 59.456 47.619 0.00 0.00 0.00 2.57
4909 5871 1.404047 GGGACATGCGGGAACAAAATG 60.404 52.381 0.00 0.00 0.00 2.32
4910 5872 0.894835 GGGACATGCGGGAACAAAAT 59.105 50.000 0.00 0.00 0.00 1.82
4911 5873 0.178975 AGGGACATGCGGGAACAAAA 60.179 50.000 0.00 0.00 0.00 2.44
4912 5874 0.693622 TAGGGACATGCGGGAACAAA 59.306 50.000 0.00 0.00 0.00 2.83
4913 5875 0.916086 ATAGGGACATGCGGGAACAA 59.084 50.000 0.00 0.00 0.00 2.83
4914 5876 1.796017 TATAGGGACATGCGGGAACA 58.204 50.000 0.00 0.00 0.00 3.18
4915 5877 2.038557 ACATATAGGGACATGCGGGAAC 59.961 50.000 0.00 0.00 0.00 3.62
4916 5878 2.301870 GACATATAGGGACATGCGGGAA 59.698 50.000 0.00 0.00 0.00 3.97
4917 5879 1.899814 GACATATAGGGACATGCGGGA 59.100 52.381 0.00 0.00 0.00 5.14
4918 5880 1.066143 GGACATATAGGGACATGCGGG 60.066 57.143 0.00 0.00 0.00 6.13
4919 5881 1.404181 CGGACATATAGGGACATGCGG 60.404 57.143 0.00 0.00 0.00 5.69
4920 5882 1.272490 ACGGACATATAGGGACATGCG 59.728 52.381 0.00 0.00 0.00 4.73
4921 5883 2.612972 CCACGGACATATAGGGACATGC 60.613 54.545 0.00 0.00 0.00 4.06
4922 5884 2.897326 TCCACGGACATATAGGGACATG 59.103 50.000 0.00 0.00 0.00 3.21
4923 5885 2.897969 GTCCACGGACATATAGGGACAT 59.102 50.000 11.43 0.00 43.27 3.06
4924 5886 2.313317 GTCCACGGACATATAGGGACA 58.687 52.381 11.43 0.00 43.27 4.02
4956 5918 4.224370 TCCAAACTCCATACTAAGGGTGAC 59.776 45.833 0.00 0.00 0.00 3.67
4957 5919 4.431378 TCCAAACTCCATACTAAGGGTGA 58.569 43.478 0.00 0.00 0.00 4.02
4958 5920 4.837093 TCCAAACTCCATACTAAGGGTG 57.163 45.455 0.00 0.00 0.00 4.61
4959 5921 5.853572 TTTCCAAACTCCATACTAAGGGT 57.146 39.130 0.00 0.00 0.00 4.34
4960 5922 8.996651 AATATTTCCAAACTCCATACTAAGGG 57.003 34.615 0.00 0.00 0.00 3.95
4965 5927 9.927081 AGATGAAATATTTCCAAACTCCATACT 57.073 29.630 22.42 6.92 36.36 2.12
4967 5929 9.354673 GGAGATGAAATATTTCCAAACTCCATA 57.645 33.333 29.50 13.42 38.80 2.74
4968 5930 7.288621 GGGAGATGAAATATTTCCAAACTCCAT 59.711 37.037 31.80 19.31 39.60 3.41
4969 5931 6.607198 GGGAGATGAAATATTTCCAAACTCCA 59.393 38.462 31.80 16.76 39.60 3.86
4970 5932 6.836007 AGGGAGATGAAATATTTCCAAACTCC 59.164 38.462 28.25 28.25 38.57 3.85
4971 5933 7.557719 TGAGGGAGATGAAATATTTCCAAACTC 59.442 37.037 22.42 21.08 36.36 3.01
4972 5934 7.413446 TGAGGGAGATGAAATATTTCCAAACT 58.587 34.615 22.42 15.88 36.36 2.66
4973 5935 7.340487 ACTGAGGGAGATGAAATATTTCCAAAC 59.660 37.037 22.42 12.66 36.36 2.93
4974 5936 7.413446 ACTGAGGGAGATGAAATATTTCCAAA 58.587 34.615 22.42 7.35 36.36 3.28
4975 5937 6.973642 ACTGAGGGAGATGAAATATTTCCAA 58.026 36.000 22.42 8.02 36.36 3.53
4976 5938 6.581388 ACTGAGGGAGATGAAATATTTCCA 57.419 37.500 22.42 12.60 36.36 3.53
4977 5939 7.609532 CCATACTGAGGGAGATGAAATATTTCC 59.390 40.741 22.42 9.70 36.36 3.13
4978 5940 8.378565 TCCATACTGAGGGAGATGAAATATTTC 58.621 37.037 19.37 19.37 32.93 2.17
4979 5941 8.280258 TCCATACTGAGGGAGATGAAATATTT 57.720 34.615 0.00 0.00 30.19 1.40
4980 5942 7.878621 TCCATACTGAGGGAGATGAAATATT 57.121 36.000 0.00 0.00 30.19 1.28
4991 5953 2.571653 CCACAAACTCCATACTGAGGGA 59.428 50.000 0.00 0.00 36.66 4.20
4992 5954 2.941415 GCCACAAACTCCATACTGAGGG 60.941 54.545 0.00 0.00 36.66 4.30
4993 5955 2.290260 TGCCACAAACTCCATACTGAGG 60.290 50.000 0.00 0.00 36.66 3.86
4994 5956 2.744202 GTGCCACAAACTCCATACTGAG 59.256 50.000 0.00 0.00 38.37 3.35
4995 5957 2.552155 GGTGCCACAAACTCCATACTGA 60.552 50.000 0.00 0.00 0.00 3.41
4996 5958 1.812571 GGTGCCACAAACTCCATACTG 59.187 52.381 0.00 0.00 0.00 2.74
4997 5959 1.423541 TGGTGCCACAAACTCCATACT 59.576 47.619 0.00 0.00 0.00 2.12
4998 5960 1.904287 TGGTGCCACAAACTCCATAC 58.096 50.000 0.00 0.00 0.00 2.39
4999 5961 2.897271 ATGGTGCCACAAACTCCATA 57.103 45.000 0.00 0.00 39.10 2.74
5000 5962 2.014010 AATGGTGCCACAAACTCCAT 57.986 45.000 0.00 0.00 41.84 3.41
5001 5963 2.666272 TAATGGTGCCACAAACTCCA 57.334 45.000 0.00 0.00 35.33 3.86
5002 5964 3.509575 TGAATAATGGTGCCACAAACTCC 59.490 43.478 0.00 0.00 0.00 3.85
5003 5965 4.022416 TGTGAATAATGGTGCCACAAACTC 60.022 41.667 0.00 0.00 35.16 3.01
5004 5966 3.894427 TGTGAATAATGGTGCCACAAACT 59.106 39.130 0.00 0.00 35.16 2.66
5005 5967 4.250116 TGTGAATAATGGTGCCACAAAC 57.750 40.909 0.00 0.00 35.16 2.93
5006 5968 4.262377 CCTTGTGAATAATGGTGCCACAAA 60.262 41.667 0.00 0.00 44.05 2.83
5007 5969 3.257873 CCTTGTGAATAATGGTGCCACAA 59.742 43.478 0.00 0.00 43.00 3.33
5008 5970 2.824936 CCTTGTGAATAATGGTGCCACA 59.175 45.455 0.00 0.00 36.15 4.17
5009 5971 2.417243 GCCTTGTGAATAATGGTGCCAC 60.417 50.000 0.00 0.00 0.00 5.01
5010 5972 1.824230 GCCTTGTGAATAATGGTGCCA 59.176 47.619 0.00 0.00 0.00 4.92
5011 5973 1.824230 TGCCTTGTGAATAATGGTGCC 59.176 47.619 0.00 0.00 0.00 5.01
5012 5974 3.806625 ATGCCTTGTGAATAATGGTGC 57.193 42.857 0.00 0.00 0.00 5.01
5013 5975 6.925165 GGAATTATGCCTTGTGAATAATGGTG 59.075 38.462 0.00 0.00 0.00 4.17
5014 5976 6.840705 AGGAATTATGCCTTGTGAATAATGGT 59.159 34.615 0.00 0.00 29.44 3.55
5015 5977 7.232127 AGAGGAATTATGCCTTGTGAATAATGG 59.768 37.037 0.00 0.00 35.44 3.16
5016 5978 8.174733 AGAGGAATTATGCCTTGTGAATAATG 57.825 34.615 0.00 0.00 35.44 1.90
5017 5979 8.773033 AAGAGGAATTATGCCTTGTGAATAAT 57.227 30.769 0.00 0.00 35.44 1.28
5018 5980 7.285401 GGAAGAGGAATTATGCCTTGTGAATAA 59.715 37.037 0.00 0.00 35.44 1.40
5019 5981 6.772716 GGAAGAGGAATTATGCCTTGTGAATA 59.227 38.462 0.00 0.00 35.44 1.75
5020 5982 5.595952 GGAAGAGGAATTATGCCTTGTGAAT 59.404 40.000 0.00 0.00 35.44 2.57
5021 5983 4.949856 GGAAGAGGAATTATGCCTTGTGAA 59.050 41.667 0.00 0.00 35.44 3.18
5022 5984 4.018506 TGGAAGAGGAATTATGCCTTGTGA 60.019 41.667 0.00 0.00 35.44 3.58
5023 5985 4.272489 TGGAAGAGGAATTATGCCTTGTG 58.728 43.478 0.00 0.00 35.44 3.33
5024 5986 4.591321 TGGAAGAGGAATTATGCCTTGT 57.409 40.909 0.00 0.00 35.44 3.16
5025 5987 4.952335 ACTTGGAAGAGGAATTATGCCTTG 59.048 41.667 0.00 0.00 35.44 3.61
5026 5988 4.952335 CACTTGGAAGAGGAATTATGCCTT 59.048 41.667 0.00 0.00 35.44 4.35
5027 5989 4.530875 CACTTGGAAGAGGAATTATGCCT 58.469 43.478 0.00 0.00 38.81 4.75
5028 5990 3.633986 CCACTTGGAAGAGGAATTATGCC 59.366 47.826 0.00 0.00 38.85 4.40
5029 5991 4.273318 ACCACTTGGAAGAGGAATTATGC 58.727 43.478 9.55 0.00 38.85 3.14
5030 5992 6.414732 TGTACCACTTGGAAGAGGAATTATG 58.585 40.000 9.55 0.00 38.85 1.90
5031 5993 6.636454 TGTACCACTTGGAAGAGGAATTAT 57.364 37.500 9.55 0.00 38.85 1.28
5032 5994 6.636454 ATGTACCACTTGGAAGAGGAATTA 57.364 37.500 9.55 0.00 38.85 1.40
5033 5995 4.993705 TGTACCACTTGGAAGAGGAATT 57.006 40.909 9.55 0.00 38.85 2.17
5034 5996 6.158695 ACATATGTACCACTTGGAAGAGGAAT 59.841 38.462 6.56 3.75 38.85 3.01
5035 5997 5.487488 ACATATGTACCACTTGGAAGAGGAA 59.513 40.000 6.56 0.00 38.85 3.36
5036 5998 5.030147 ACATATGTACCACTTGGAAGAGGA 58.970 41.667 6.56 0.00 38.85 3.71
5037 5999 5.104941 TCACATATGTACCACTTGGAAGAGG 60.105 44.000 8.32 1.67 41.80 3.69
5038 6000 5.812642 GTCACATATGTACCACTTGGAAGAG 59.187 44.000 8.32 0.00 38.94 2.85
5039 6001 5.247337 TGTCACATATGTACCACTTGGAAGA 59.753 40.000 8.32 0.00 38.94 2.87
5042 6004 5.491323 TTGTCACATATGTACCACTTGGA 57.509 39.130 8.32 0.00 38.94 3.53
5079 6041 1.206132 ACGTGCAGAATCGGGATACAA 59.794 47.619 0.00 0.00 39.74 2.41
5149 6111 4.103153 ACTCCTCTTTGTTGTCTTCATGGA 59.897 41.667 0.00 0.00 0.00 3.41
5219 6181 6.712276 ACCAGACGATAGAGAAGGAATTTTT 58.288 36.000 0.00 0.00 41.38 1.94
5446 6408 3.756434 CCTCAAAATTAGCTTTCCCGTGA 59.244 43.478 0.00 0.00 0.00 4.35
5569 6531 5.694231 TGTGTCAATCAGAACCATGAAAG 57.306 39.130 0.00 0.00 31.76 2.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.