Multiple sequence alignment - TraesCS5A01G140000
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5A01G140000 | chr5A | 100.000 | 6540 | 0 | 0 | 1 | 6540 | 312247451 | 312240912 | 0.000000e+00 | 12078.0 |
1 | TraesCS5A01G140000 | chr5A | 98.467 | 522 | 8 | 0 | 6019 | 6540 | 312234984 | 312234463 | 0.000000e+00 | 920.0 |
2 | TraesCS5A01G140000 | chr5A | 84.437 | 302 | 34 | 10 | 5480 | 5781 | 614167160 | 614166872 | 1.070000e-72 | 285.0 |
3 | TraesCS5A01G140000 | chr5A | 96.875 | 32 | 0 | 1 | 3623 | 3653 | 312265302 | 312265271 | 1.200000e-02 | 52.8 |
4 | TraesCS5A01G140000 | chr5A | 83.051 | 59 | 8 | 2 | 1625 | 1682 | 573652186 | 573652129 | 1.200000e-02 | 52.8 |
5 | TraesCS5A01G140000 | chr5D | 94.195 | 3962 | 127 | 56 | 2102 | 6013 | 242019984 | 242016076 | 0.000000e+00 | 5947.0 |
6 | TraesCS5A01G140000 | chr5D | 89.918 | 1587 | 99 | 38 | 20 | 1568 | 242022043 | 242020480 | 0.000000e+00 | 1988.0 |
7 | TraesCS5A01G140000 | chr5D | 95.575 | 113 | 5 | 0 | 1993 | 2105 | 242020209 | 242020097 | 1.450000e-41 | 182.0 |
8 | TraesCS5A01G140000 | chr5D | 95.556 | 45 | 0 | 2 | 1780 | 1823 | 4029077 | 4029034 | 3.270000e-08 | 71.3 |
9 | TraesCS5A01G140000 | chr5D | 94.872 | 39 | 1 | 1 | 1780 | 1818 | 230374155 | 230374118 | 7.080000e-05 | 60.2 |
10 | TraesCS5A01G140000 | chr5B | 95.618 | 1643 | 59 | 6 | 2102 | 3733 | 257013942 | 257012302 | 0.000000e+00 | 2623.0 |
11 | TraesCS5A01G140000 | chr5B | 93.443 | 976 | 39 | 10 | 3746 | 4701 | 257012317 | 257011347 | 0.000000e+00 | 1424.0 |
12 | TraesCS5A01G140000 | chr5B | 90.018 | 551 | 36 | 6 | 4689 | 5237 | 257005320 | 257004787 | 0.000000e+00 | 695.0 |
13 | TraesCS5A01G140000 | chr5B | 81.994 | 672 | 45 | 35 | 5416 | 6018 | 257004783 | 257004119 | 9.790000e-138 | 501.0 |
14 | TraesCS5A01G140000 | chr5B | 80.867 | 669 | 37 | 32 | 539 | 1168 | 257017249 | 257016633 | 6.020000e-120 | 442.0 |
15 | TraesCS5A01G140000 | chr5B | 88.485 | 165 | 11 | 6 | 319 | 477 | 257017398 | 257017236 | 6.690000e-45 | 193.0 |
16 | TraesCS5A01G140000 | chr5B | 82.775 | 209 | 11 | 13 | 1818 | 2026 | 257014263 | 257014080 | 5.250000e-36 | 163.0 |
17 | TraesCS5A01G140000 | chr5B | 92.157 | 102 | 5 | 3 | 1528 | 1627 | 257014377 | 257014277 | 2.460000e-29 | 141.0 |
18 | TraesCS5A01G140000 | chr5B | 84.375 | 128 | 14 | 3 | 53 | 174 | 257017595 | 257017468 | 3.200000e-23 | 121.0 |
19 | TraesCS5A01G140000 | chr5B | 87.000 | 100 | 10 | 1 | 193 | 289 | 257017499 | 257017400 | 6.930000e-20 | 110.0 |
20 | TraesCS5A01G140000 | chr5B | 98.276 | 58 | 1 | 0 | 2048 | 2105 | 257014082 | 257014025 | 1.160000e-17 | 102.0 |
21 | TraesCS5A01G140000 | chr5B | 91.045 | 67 | 4 | 2 | 5263 | 5327 | 711742601 | 711742667 | 9.030000e-14 | 89.8 |
22 | TraesCS5A01G140000 | chr7A | 98.851 | 522 | 5 | 1 | 6019 | 6540 | 445608972 | 445608452 | 0.000000e+00 | 929.0 |
23 | TraesCS5A01G140000 | chr7A | 98.662 | 523 | 6 | 1 | 6019 | 6540 | 445623902 | 445623380 | 0.000000e+00 | 926.0 |
24 | TraesCS5A01G140000 | chr7A | 100.000 | 32 | 0 | 0 | 1625 | 1656 | 547353384 | 547353415 | 7.080000e-05 | 60.2 |
25 | TraesCS5A01G140000 | chr6B | 98.476 | 525 | 5 | 1 | 6016 | 6540 | 704559119 | 704559640 | 0.000000e+00 | 922.0 |
26 | TraesCS5A01G140000 | chr6B | 98.276 | 522 | 5 | 2 | 6019 | 6540 | 704552722 | 704553239 | 0.000000e+00 | 911.0 |
27 | TraesCS5A01G140000 | chr3A | 98.289 | 526 | 8 | 1 | 6015 | 6540 | 22675087 | 22675611 | 0.000000e+00 | 920.0 |
28 | TraesCS5A01G140000 | chr3B | 98.467 | 522 | 6 | 1 | 6019 | 6540 | 13911639 | 13911120 | 0.000000e+00 | 918.0 |
29 | TraesCS5A01G140000 | chr3B | 98.276 | 522 | 6 | 1 | 6019 | 6540 | 13918040 | 13917522 | 0.000000e+00 | 911.0 |
30 | TraesCS5A01G140000 | chr3B | 94.872 | 39 | 1 | 1 | 1780 | 1818 | 735968157 | 735968120 | 7.080000e-05 | 60.2 |
31 | TraesCS5A01G140000 | chr6A | 98.084 | 522 | 10 | 0 | 6019 | 6540 | 604611476 | 604610955 | 0.000000e+00 | 909.0 |
32 | TraesCS5A01G140000 | chr6A | 85.906 | 298 | 28 | 10 | 5484 | 5781 | 304899372 | 304899089 | 8.240000e-79 | 305.0 |
33 | TraesCS5A01G140000 | chr6A | 87.387 | 111 | 8 | 3 | 1624 | 1733 | 25766315 | 25766420 | 8.910000e-24 | 122.0 |
34 | TraesCS5A01G140000 | chr6A | 95.000 | 60 | 1 | 2 | 5259 | 5317 | 538047987 | 538048045 | 6.980000e-15 | 93.5 |
35 | TraesCS5A01G140000 | chr3D | 87.708 | 301 | 24 | 9 | 5481 | 5781 | 482119904 | 482120191 | 8.120000e-89 | 339.0 |
36 | TraesCS5A01G140000 | chr3D | 89.855 | 69 | 5 | 2 | 5272 | 5338 | 423260079 | 423260147 | 3.250000e-13 | 87.9 |
37 | TraesCS5A01G140000 | chr3D | 97.222 | 36 | 1 | 0 | 1791 | 1826 | 359340426 | 359340391 | 1.970000e-05 | 62.1 |
38 | TraesCS5A01G140000 | chr3D | 84.483 | 58 | 7 | 2 | 1626 | 1682 | 15154355 | 15154411 | 1.000000e-03 | 56.5 |
39 | TraesCS5A01G140000 | chr7B | 85.382 | 301 | 31 | 10 | 5481 | 5781 | 404521839 | 404522126 | 3.830000e-77 | 300.0 |
40 | TraesCS5A01G140000 | chr7B | 98.077 | 52 | 1 | 0 | 2761 | 2812 | 626589604 | 626589553 | 2.510000e-14 | 91.6 |
41 | TraesCS5A01G140000 | chr1A | 85.382 | 301 | 31 | 9 | 5481 | 5781 | 562698762 | 562699049 | 3.830000e-77 | 300.0 |
42 | TraesCS5A01G140000 | chr4B | 85.235 | 298 | 31 | 9 | 5484 | 5781 | 359898849 | 359898565 | 1.780000e-75 | 294.0 |
43 | TraesCS5A01G140000 | chr2A | 85.050 | 301 | 32 | 9 | 5481 | 5781 | 305598948 | 305599235 | 1.780000e-75 | 294.0 |
44 | TraesCS5A01G140000 | chr2A | 89.041 | 73 | 2 | 3 | 5245 | 5317 | 65084795 | 65084861 | 1.170000e-12 | 86.1 |
45 | TraesCS5A01G140000 | chr2A | 81.818 | 99 | 12 | 6 | 5222 | 5317 | 199081967 | 199082062 | 1.960000e-10 | 78.7 |
46 | TraesCS5A01G140000 | chr2D | 87.421 | 159 | 10 | 7 | 5623 | 5781 | 638013032 | 638013180 | 2.420000e-39 | 174.0 |
47 | TraesCS5A01G140000 | chr2D | 92.308 | 65 | 3 | 2 | 5271 | 5334 | 631487226 | 631487289 | 2.510000e-14 | 91.6 |
48 | TraesCS5A01G140000 | chr4A | 90.000 | 100 | 10 | 0 | 1051 | 1150 | 466643944 | 466643845 | 5.320000e-26 | 130.0 |
49 | TraesCS5A01G140000 | chr4A | 87.805 | 82 | 7 | 3 | 1747 | 1826 | 593201923 | 593201843 | 6.980000e-15 | 93.5 |
50 | TraesCS5A01G140000 | chr4A | 87.838 | 74 | 7 | 2 | 5269 | 5341 | 710779509 | 710779437 | 1.170000e-12 | 86.1 |
51 | TraesCS5A01G140000 | chr7D | 85.965 | 114 | 10 | 3 | 1624 | 1737 | 82851628 | 82851521 | 4.140000e-22 | 117.0 |
52 | TraesCS5A01G140000 | chr7D | 94.872 | 39 | 1 | 1 | 1780 | 1818 | 197874068 | 197874031 | 7.080000e-05 | 60.2 |
53 | TraesCS5A01G140000 | chr2B | 87.838 | 74 | 8 | 1 | 1745 | 1818 | 245996300 | 245996228 | 1.170000e-12 | 86.1 |
54 | TraesCS5A01G140000 | chr1B | 89.706 | 68 | 6 | 1 | 5261 | 5327 | 151463494 | 151463427 | 1.170000e-12 | 86.1 |
55 | TraesCS5A01G140000 | chr1B | 97.222 | 36 | 1 | 0 | 1626 | 1661 | 429704494 | 429704529 | 1.970000e-05 | 62.1 |
56 | TraesCS5A01G140000 | chr1B | 97.059 | 34 | 1 | 0 | 1628 | 1661 | 677028289 | 677028322 | 2.550000e-04 | 58.4 |
57 | TraesCS5A01G140000 | chr1D | 85.714 | 63 | 4 | 5 | 1780 | 1840 | 176804113 | 176804054 | 1.970000e-05 | 62.1 |
58 | TraesCS5A01G140000 | chr1D | 100.000 | 31 | 0 | 0 | 1623 | 1653 | 323868929 | 323868959 | 2.550000e-04 | 58.4 |
59 | TraesCS5A01G140000 | chr6D | 94.737 | 38 | 2 | 0 | 1788 | 1825 | 90438150 | 90438187 | 7.080000e-05 | 60.2 |
60 | TraesCS5A01G140000 | chr6D | 97.059 | 34 | 1 | 0 | 1622 | 1655 | 392529661 | 392529628 | 2.550000e-04 | 58.4 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5A01G140000 | chr5A | 312240912 | 312247451 | 6539 | True | 12078.000000 | 12078 | 100.000000 | 1 | 6540 | 1 | chr5A.!!$R2 | 6539 |
1 | TraesCS5A01G140000 | chr5A | 312234463 | 312234984 | 521 | True | 920.000000 | 920 | 98.467000 | 6019 | 6540 | 1 | chr5A.!!$R1 | 521 |
2 | TraesCS5A01G140000 | chr5D | 242016076 | 242022043 | 5967 | True | 2705.666667 | 5947 | 93.229333 | 20 | 6013 | 3 | chr5D.!!$R3 | 5993 |
3 | TraesCS5A01G140000 | chr5B | 257004119 | 257005320 | 1201 | True | 598.000000 | 695 | 86.006000 | 4689 | 6018 | 2 | chr5B.!!$R1 | 1329 |
4 | TraesCS5A01G140000 | chr5B | 257011347 | 257017595 | 6248 | True | 591.000000 | 2623 | 89.221778 | 53 | 4701 | 9 | chr5B.!!$R2 | 4648 |
5 | TraesCS5A01G140000 | chr7A | 445608452 | 445608972 | 520 | True | 929.000000 | 929 | 98.851000 | 6019 | 6540 | 1 | chr7A.!!$R1 | 521 |
6 | TraesCS5A01G140000 | chr7A | 445623380 | 445623902 | 522 | True | 926.000000 | 926 | 98.662000 | 6019 | 6540 | 1 | chr7A.!!$R2 | 521 |
7 | TraesCS5A01G140000 | chr6B | 704559119 | 704559640 | 521 | False | 922.000000 | 922 | 98.476000 | 6016 | 6540 | 1 | chr6B.!!$F2 | 524 |
8 | TraesCS5A01G140000 | chr6B | 704552722 | 704553239 | 517 | False | 911.000000 | 911 | 98.276000 | 6019 | 6540 | 1 | chr6B.!!$F1 | 521 |
9 | TraesCS5A01G140000 | chr3A | 22675087 | 22675611 | 524 | False | 920.000000 | 920 | 98.289000 | 6015 | 6540 | 1 | chr3A.!!$F1 | 525 |
10 | TraesCS5A01G140000 | chr3B | 13911120 | 13911639 | 519 | True | 918.000000 | 918 | 98.467000 | 6019 | 6540 | 1 | chr3B.!!$R1 | 521 |
11 | TraesCS5A01G140000 | chr3B | 13917522 | 13918040 | 518 | True | 911.000000 | 911 | 98.276000 | 6019 | 6540 | 1 | chr3B.!!$R2 | 521 |
12 | TraesCS5A01G140000 | chr6A | 604610955 | 604611476 | 521 | True | 909.000000 | 909 | 98.084000 | 6019 | 6540 | 1 | chr6A.!!$R2 | 521 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
523 | 542 | 0.250684 | TCGGCCTTTGCATCAGAACA | 60.251 | 50.0 | 0.00 | 0.0 | 40.13 | 3.18 | F |
1481 | 3340 | 0.395862 | TCCGTCCCTCTGTCTCCATC | 60.396 | 60.0 | 0.00 | 0.0 | 0.00 | 3.51 | F |
1811 | 3811 | 0.036765 | ACACGTGTGGGCGTTATCAT | 60.037 | 50.0 | 22.71 | 0.0 | 43.83 | 2.45 | F |
3293 | 5503 | 0.246086 | TTGCCCATTTTCATGTCCGC | 59.754 | 50.0 | 0.00 | 0.0 | 0.00 | 5.54 | F |
3597 | 5807 | 1.024579 | ATTGGCCGTTGATGTCGTCC | 61.025 | 55.0 | 0.00 | 0.0 | 0.00 | 4.79 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1630 | 3630 | 0.713883 | CACGTGTGACAGTTATCGGC | 59.286 | 55.000 | 7.58 | 0.00 | 0.00 | 5.54 | R |
3355 | 5565 | 0.181114 | TGCAGCTTATGAGGGCGAAT | 59.819 | 50.000 | 0.00 | 0.00 | 0.00 | 3.34 | R |
3692 | 5902 | 2.630098 | GCACCTAGATCTGCAGTATCCA | 59.370 | 50.000 | 14.67 | 4.11 | 33.31 | 3.41 | R |
4472 | 6700 | 2.726555 | CGATGAGCATTCGTGAAAGG | 57.273 | 50.000 | 0.00 | 0.00 | 0.00 | 3.11 | R |
5588 | 7824 | 1.740905 | CATGCCAGTGCCACACAAA | 59.259 | 52.632 | 0.00 | 0.00 | 36.74 | 2.83 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
39 | 40 | 6.930667 | AAAAATACGTGTCAGTAACCACTT | 57.069 | 33.333 | 0.00 | 0.00 | 30.46 | 3.16 |
48 | 49 | 3.439129 | GTCAGTAACCACTTATGTTGGGC | 59.561 | 47.826 | 0.00 | 0.00 | 30.46 | 5.36 |
71 | 72 | 5.277538 | GCGACAAAAGGATATCCAAGATGAC | 60.278 | 44.000 | 23.81 | 14.44 | 38.89 | 3.06 |
128 | 129 | 3.169733 | GTGATGGACGAGTAGACGTTTC | 58.830 | 50.000 | 0.00 | 0.00 | 46.52 | 2.78 |
171 | 178 | 2.939103 | GGGAAAGAAGATGTGATGGACG | 59.061 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
183 | 190 | 1.274167 | TGATGGACGAGTAGGCGTTTT | 59.726 | 47.619 | 0.00 | 0.00 | 45.72 | 2.43 |
213 | 220 | 5.124617 | TGTTTTTGTGGGGAAAAGAAAATGC | 59.875 | 36.000 | 0.00 | 0.00 | 0.00 | 3.56 |
455 | 473 | 8.106247 | ACCAAGCTCGTATCTTATTTTTCAAA | 57.894 | 30.769 | 0.00 | 0.00 | 0.00 | 2.69 |
456 | 474 | 8.573035 | ACCAAGCTCGTATCTTATTTTTCAAAA | 58.427 | 29.630 | 0.00 | 0.00 | 0.00 | 2.44 |
477 | 495 | 1.209990 | CCCAGAAATCTCAGCTCTGCT | 59.790 | 52.381 | 0.00 | 0.00 | 40.77 | 4.24 |
481 | 499 | 4.217983 | CCAGAAATCTCAGCTCTGCTTTTT | 59.782 | 41.667 | 0.00 | 0.00 | 36.40 | 1.94 |
512 | 531 | 1.632589 | AAAAATCAGCCTCGGCCTTT | 58.367 | 45.000 | 0.00 | 0.00 | 43.17 | 3.11 |
523 | 542 | 0.250684 | TCGGCCTTTGCATCAGAACA | 60.251 | 50.000 | 0.00 | 0.00 | 40.13 | 3.18 |
532 | 551 | 1.197055 | GCATCAGAACAATGCATGCG | 58.803 | 50.000 | 14.09 | 0.76 | 46.93 | 4.73 |
535 | 554 | 1.812235 | TCAGAACAATGCATGCGACT | 58.188 | 45.000 | 14.09 | 2.96 | 0.00 | 4.18 |
540 | 559 | 3.691118 | AGAACAATGCATGCGACTGTAAT | 59.309 | 39.130 | 14.09 | 5.61 | 0.00 | 1.89 |
542 | 561 | 3.273434 | ACAATGCATGCGACTGTAATCT | 58.727 | 40.909 | 14.09 | 0.00 | 0.00 | 2.40 |
591 | 610 | 7.932491 | TCTCTATATATACCAGTACCATCGCTC | 59.068 | 40.741 | 0.00 | 0.00 | 0.00 | 5.03 |
593 | 612 | 1.977056 | ATACCAGTACCATCGCTCGA | 58.023 | 50.000 | 0.00 | 0.00 | 0.00 | 4.04 |
641 | 669 | 5.628193 | CCATATAGCTTCAGTTACCGTAACG | 59.372 | 44.000 | 14.35 | 10.21 | 43.29 | 3.18 |
676 | 704 | 3.327757 | TGTAAGCTGGATTTGTCTGGACT | 59.672 | 43.478 | 0.00 | 0.00 | 0.00 | 3.85 |
677 | 705 | 2.486472 | AGCTGGATTTGTCTGGACTG | 57.514 | 50.000 | 2.38 | 0.00 | 0.00 | 3.51 |
678 | 706 | 1.980765 | AGCTGGATTTGTCTGGACTGA | 59.019 | 47.619 | 2.38 | 0.00 | 0.00 | 3.41 |
679 | 707 | 2.373169 | AGCTGGATTTGTCTGGACTGAA | 59.627 | 45.455 | 2.38 | 0.00 | 0.00 | 3.02 |
680 | 708 | 2.746362 | GCTGGATTTGTCTGGACTGAAG | 59.254 | 50.000 | 2.38 | 0.00 | 0.00 | 3.02 |
828 | 868 | 2.866762 | ACACGACAAGCTTCTTCAACTC | 59.133 | 45.455 | 0.00 | 0.00 | 0.00 | 3.01 |
871 | 913 | 1.139947 | CGCTCGTCCTTCCTCTTCC | 59.860 | 63.158 | 0.00 | 0.00 | 0.00 | 3.46 |
992 | 1069 | 4.039357 | CGTCGTGGTCGTCTGGCT | 62.039 | 66.667 | 0.00 | 0.00 | 38.33 | 4.75 |
1015 | 1092 | 4.593864 | GGATGGGAGAGTCGCCGC | 62.594 | 72.222 | 6.84 | 0.89 | 0.00 | 6.53 |
1021 | 1098 | 4.373116 | GAGAGTCGCCGCCACCAA | 62.373 | 66.667 | 0.00 | 0.00 | 0.00 | 3.67 |
1173 | 1250 | 8.870116 | ACCTTTGCATCATGTCAGTATATACTA | 58.130 | 33.333 | 15.03 | 0.68 | 34.13 | 1.82 |
1185 | 1380 | 8.373981 | TGTCAGTATATACTACTCCCTGTCTAC | 58.626 | 40.741 | 15.03 | 0.00 | 34.13 | 2.59 |
1194 | 1389 | 3.521727 | ACTCCCTGTCTACAACCAAGAT | 58.478 | 45.455 | 0.00 | 0.00 | 0.00 | 2.40 |
1225 | 1420 | 1.686587 | CTGGTACTGGCATGGTCGATA | 59.313 | 52.381 | 0.00 | 0.00 | 0.00 | 2.92 |
1227 | 1422 | 2.299013 | TGGTACTGGCATGGTCGATATC | 59.701 | 50.000 | 0.00 | 0.00 | 0.00 | 1.63 |
1228 | 1423 | 2.563179 | GGTACTGGCATGGTCGATATCT | 59.437 | 50.000 | 0.34 | 0.00 | 0.00 | 1.98 |
1229 | 1424 | 3.006967 | GGTACTGGCATGGTCGATATCTT | 59.993 | 47.826 | 0.34 | 0.00 | 0.00 | 2.40 |
1230 | 1425 | 3.117491 | ACTGGCATGGTCGATATCTTG | 57.883 | 47.619 | 0.34 | 0.00 | 0.00 | 3.02 |
1305 | 1503 | 6.941436 | TCCCTTCTCTCGGTCTTATCTTATAC | 59.059 | 42.308 | 0.00 | 0.00 | 0.00 | 1.47 |
1321 | 3173 | 0.454600 | ATACCCACTGCACGTACTCG | 59.545 | 55.000 | 0.00 | 0.00 | 43.34 | 4.18 |
1399 | 3258 | 7.825761 | TGGTATCATTCTTGGAGCACATATATG | 59.174 | 37.037 | 11.29 | 11.29 | 0.00 | 1.78 |
1453 | 3312 | 3.274288 | GTTCCCAACATGACTGATCCTC | 58.726 | 50.000 | 0.00 | 0.00 | 0.00 | 3.71 |
1458 | 3317 | 3.196463 | CAACATGACTGATCCTCTCTGC | 58.804 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
1460 | 3319 | 2.040939 | CATGACTGATCCTCTCTGCCT | 58.959 | 52.381 | 0.00 | 0.00 | 0.00 | 4.75 |
1465 | 3324 | 1.039785 | TGATCCTCTCTGCCTGTCCG | 61.040 | 60.000 | 0.00 | 0.00 | 0.00 | 4.79 |
1468 | 3327 | 2.716017 | CCTCTCTGCCTGTCCGTCC | 61.716 | 68.421 | 0.00 | 0.00 | 0.00 | 4.79 |
1469 | 3328 | 2.680352 | TCTCTGCCTGTCCGTCCC | 60.680 | 66.667 | 0.00 | 0.00 | 0.00 | 4.46 |
1470 | 3329 | 2.681778 | CTCTGCCTGTCCGTCCCT | 60.682 | 66.667 | 0.00 | 0.00 | 0.00 | 4.20 |
1471 | 3330 | 2.680352 | TCTGCCTGTCCGTCCCTC | 60.680 | 66.667 | 0.00 | 0.00 | 0.00 | 4.30 |
1472 | 3331 | 2.681778 | CTGCCTGTCCGTCCCTCT | 60.682 | 66.667 | 0.00 | 0.00 | 0.00 | 3.69 |
1473 | 3332 | 2.997315 | TGCCTGTCCGTCCCTCTG | 60.997 | 66.667 | 0.00 | 0.00 | 0.00 | 3.35 |
1474 | 3333 | 2.997897 | GCCTGTCCGTCCCTCTGT | 60.998 | 66.667 | 0.00 | 0.00 | 0.00 | 3.41 |
1475 | 3334 | 3.007973 | GCCTGTCCGTCCCTCTGTC | 62.008 | 68.421 | 0.00 | 0.00 | 0.00 | 3.51 |
1476 | 3335 | 1.304547 | CCTGTCCGTCCCTCTGTCT | 60.305 | 63.158 | 0.00 | 0.00 | 0.00 | 3.41 |
1477 | 3336 | 1.316706 | CCTGTCCGTCCCTCTGTCTC | 61.317 | 65.000 | 0.00 | 0.00 | 0.00 | 3.36 |
1479 | 3338 | 1.304217 | GTCCGTCCCTCTGTCTCCA | 60.304 | 63.158 | 0.00 | 0.00 | 0.00 | 3.86 |
1480 | 3339 | 0.684805 | GTCCGTCCCTCTGTCTCCAT | 60.685 | 60.000 | 0.00 | 0.00 | 0.00 | 3.41 |
1481 | 3340 | 0.395862 | TCCGTCCCTCTGTCTCCATC | 60.396 | 60.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1579 | 3578 | 4.540359 | TGCCATTTTCCCTTTCTTCATG | 57.460 | 40.909 | 0.00 | 0.00 | 0.00 | 3.07 |
1580 | 3579 | 3.903090 | TGCCATTTTCCCTTTCTTCATGT | 59.097 | 39.130 | 0.00 | 0.00 | 0.00 | 3.21 |
1581 | 3580 | 5.083122 | TGCCATTTTCCCTTTCTTCATGTA | 58.917 | 37.500 | 0.00 | 0.00 | 0.00 | 2.29 |
1582 | 3581 | 5.185635 | TGCCATTTTCCCTTTCTTCATGTAG | 59.814 | 40.000 | 0.00 | 0.00 | 0.00 | 2.74 |
1607 | 3607 | 5.640189 | AGCTGGATTTCACTCTTCATTTG | 57.360 | 39.130 | 0.00 | 0.00 | 0.00 | 2.32 |
1609 | 3609 | 4.741342 | CTGGATTTCACTCTTCATTTGGC | 58.259 | 43.478 | 0.00 | 0.00 | 0.00 | 4.52 |
1610 | 3610 | 4.151121 | TGGATTTCACTCTTCATTTGGCA | 58.849 | 39.130 | 0.00 | 0.00 | 0.00 | 4.92 |
1613 | 3613 | 5.337009 | GGATTTCACTCTTCATTTGGCATGT | 60.337 | 40.000 | 0.00 | 0.00 | 0.00 | 3.21 |
1627 | 3627 | 4.052159 | TGGCATGTGTGTTTGTTTTAGG | 57.948 | 40.909 | 0.00 | 0.00 | 0.00 | 2.69 |
1628 | 3628 | 3.701542 | TGGCATGTGTGTTTGTTTTAGGA | 59.298 | 39.130 | 0.00 | 0.00 | 0.00 | 2.94 |
1629 | 3629 | 4.048504 | GGCATGTGTGTTTGTTTTAGGAC | 58.951 | 43.478 | 0.00 | 0.00 | 0.00 | 3.85 |
1630 | 3630 | 3.728718 | GCATGTGTGTTTGTTTTAGGACG | 59.271 | 43.478 | 0.00 | 0.00 | 0.00 | 4.79 |
1631 | 3631 | 3.408288 | TGTGTGTTTGTTTTAGGACGC | 57.592 | 42.857 | 0.00 | 0.00 | 0.00 | 5.19 |
1632 | 3632 | 2.097791 | TGTGTGTTTGTTTTAGGACGCC | 59.902 | 45.455 | 0.00 | 0.00 | 0.00 | 5.68 |
1633 | 3633 | 1.331138 | TGTGTTTGTTTTAGGACGCCG | 59.669 | 47.619 | 0.00 | 0.00 | 0.00 | 6.46 |
1634 | 3634 | 1.598601 | GTGTTTGTTTTAGGACGCCGA | 59.401 | 47.619 | 0.00 | 0.00 | 0.00 | 5.54 |
1637 | 3637 | 4.063689 | TGTTTGTTTTAGGACGCCGATAA | 58.936 | 39.130 | 0.00 | 0.00 | 0.00 | 1.75 |
1638 | 3638 | 4.083908 | TGTTTGTTTTAGGACGCCGATAAC | 60.084 | 41.667 | 0.00 | 5.79 | 0.00 | 1.89 |
1639 | 3639 | 3.598019 | TGTTTTAGGACGCCGATAACT | 57.402 | 42.857 | 0.00 | 0.00 | 0.00 | 2.24 |
1640 | 3640 | 3.255725 | TGTTTTAGGACGCCGATAACTG | 58.744 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
1641 | 3641 | 3.256558 | GTTTTAGGACGCCGATAACTGT | 58.743 | 45.455 | 0.00 | 0.00 | 0.00 | 3.55 |
1642 | 3642 | 2.857592 | TTAGGACGCCGATAACTGTC | 57.142 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1643 | 3643 | 1.753930 | TAGGACGCCGATAACTGTCA | 58.246 | 50.000 | 0.00 | 0.00 | 33.04 | 3.58 |
1644 | 3644 | 0.172803 | AGGACGCCGATAACTGTCAC | 59.827 | 55.000 | 0.00 | 0.00 | 33.04 | 3.67 |
1645 | 3645 | 0.108992 | GGACGCCGATAACTGTCACA | 60.109 | 55.000 | 0.00 | 0.00 | 33.04 | 3.58 |
1646 | 3646 | 0.989890 | GACGCCGATAACTGTCACAC | 59.010 | 55.000 | 0.00 | 0.00 | 0.00 | 3.82 |
1647 | 3647 | 0.731514 | ACGCCGATAACTGTCACACG | 60.732 | 55.000 | 0.00 | 0.00 | 0.00 | 4.49 |
1648 | 3648 | 0.731514 | CGCCGATAACTGTCACACGT | 60.732 | 55.000 | 0.00 | 0.00 | 0.00 | 4.49 |
1649 | 3649 | 0.713883 | GCCGATAACTGTCACACGTG | 59.286 | 55.000 | 15.48 | 15.48 | 0.00 | 4.49 |
1650 | 3650 | 1.933500 | GCCGATAACTGTCACACGTGT | 60.934 | 52.381 | 17.22 | 17.22 | 0.00 | 4.49 |
1651 | 3651 | 1.719246 | CCGATAACTGTCACACGTGTG | 59.281 | 52.381 | 37.04 | 37.04 | 46.91 | 3.82 |
1652 | 3652 | 1.719246 | CGATAACTGTCACACGTGTGG | 59.281 | 52.381 | 39.88 | 28.84 | 45.65 | 4.17 |
1659 | 3659 | 3.209266 | TCACACGTGTGGCATGTAG | 57.791 | 52.632 | 39.88 | 18.65 | 45.65 | 2.74 |
1660 | 3660 | 0.391228 | TCACACGTGTGGCATGTAGT | 59.609 | 50.000 | 39.88 | 5.48 | 45.65 | 2.73 |
1661 | 3661 | 1.614413 | TCACACGTGTGGCATGTAGTA | 59.386 | 47.619 | 39.88 | 20.41 | 45.65 | 1.82 |
1662 | 3662 | 2.036089 | TCACACGTGTGGCATGTAGTAA | 59.964 | 45.455 | 39.88 | 19.72 | 45.65 | 2.24 |
1663 | 3663 | 2.156891 | CACACGTGTGGCATGTAGTAAC | 59.843 | 50.000 | 35.65 | 0.00 | 42.10 | 2.50 |
1664 | 3664 | 2.224090 | ACACGTGTGGCATGTAGTAACA | 60.224 | 45.455 | 22.71 | 0.00 | 35.86 | 2.41 |
1665 | 3665 | 3.556213 | ACACGTGTGGCATGTAGTAACAT | 60.556 | 43.478 | 22.71 | 0.00 | 39.94 | 2.71 |
1666 | 3666 | 3.062099 | CACGTGTGGCATGTAGTAACATC | 59.938 | 47.826 | 7.58 | 0.00 | 44.70 | 3.06 |
1667 | 3667 | 3.258228 | CGTGTGGCATGTAGTAACATCA | 58.742 | 45.455 | 0.00 | 0.00 | 44.70 | 3.07 |
1668 | 3668 | 3.062099 | CGTGTGGCATGTAGTAACATCAC | 59.938 | 47.826 | 0.00 | 4.32 | 44.70 | 3.06 |
1669 | 3669 | 3.374058 | GTGTGGCATGTAGTAACATCACC | 59.626 | 47.826 | 0.00 | 4.76 | 44.70 | 4.02 |
1670 | 3670 | 2.943033 | GTGGCATGTAGTAACATCACCC | 59.057 | 50.000 | 0.00 | 0.80 | 44.70 | 4.61 |
1671 | 3671 | 2.573915 | TGGCATGTAGTAACATCACCCA | 59.426 | 45.455 | 0.00 | 2.82 | 44.70 | 4.51 |
1672 | 3672 | 2.943033 | GGCATGTAGTAACATCACCCAC | 59.057 | 50.000 | 0.00 | 0.00 | 44.70 | 4.61 |
1673 | 3673 | 3.605634 | GCATGTAGTAACATCACCCACA | 58.394 | 45.455 | 0.00 | 0.00 | 44.70 | 4.17 |
1674 | 3674 | 3.374058 | GCATGTAGTAACATCACCCACAC | 59.626 | 47.826 | 0.00 | 0.00 | 44.70 | 3.82 |
1675 | 3675 | 3.306917 | TGTAGTAACATCACCCACACG | 57.693 | 47.619 | 0.00 | 0.00 | 0.00 | 4.49 |
1676 | 3676 | 2.629137 | TGTAGTAACATCACCCACACGT | 59.371 | 45.455 | 0.00 | 0.00 | 0.00 | 4.49 |
1677 | 3677 | 2.922740 | AGTAACATCACCCACACGTT | 57.077 | 45.000 | 0.00 | 0.00 | 0.00 | 3.99 |
1678 | 3678 | 3.202829 | AGTAACATCACCCACACGTTT | 57.797 | 42.857 | 0.00 | 0.00 | 0.00 | 3.60 |
1679 | 3679 | 3.547746 | AGTAACATCACCCACACGTTTT | 58.452 | 40.909 | 0.00 | 0.00 | 0.00 | 2.43 |
1680 | 3680 | 2.861462 | AACATCACCCACACGTTTTG | 57.139 | 45.000 | 0.00 | 0.00 | 0.00 | 2.44 |
1681 | 3681 | 1.757682 | ACATCACCCACACGTTTTGT | 58.242 | 45.000 | 0.00 | 0.00 | 39.97 | 2.83 |
1682 | 3682 | 2.096248 | ACATCACCCACACGTTTTGTT | 58.904 | 42.857 | 0.00 | 0.00 | 35.67 | 2.83 |
1683 | 3683 | 2.494073 | ACATCACCCACACGTTTTGTTT | 59.506 | 40.909 | 0.00 | 0.00 | 35.67 | 2.83 |
1684 | 3684 | 3.056465 | ACATCACCCACACGTTTTGTTTT | 60.056 | 39.130 | 0.00 | 0.00 | 35.67 | 2.43 |
1685 | 3685 | 3.662247 | TCACCCACACGTTTTGTTTTT | 57.338 | 38.095 | 0.00 | 0.00 | 35.67 | 1.94 |
1686 | 3686 | 4.778534 | TCACCCACACGTTTTGTTTTTA | 57.221 | 36.364 | 0.00 | 0.00 | 35.67 | 1.52 |
1687 | 3687 | 4.483311 | TCACCCACACGTTTTGTTTTTAC | 58.517 | 39.130 | 0.00 | 0.00 | 35.67 | 2.01 |
1688 | 3688 | 4.022589 | TCACCCACACGTTTTGTTTTTACA | 60.023 | 37.500 | 0.00 | 0.00 | 35.67 | 2.41 |
1689 | 3689 | 4.865365 | CACCCACACGTTTTGTTTTTACAT | 59.135 | 37.500 | 0.00 | 0.00 | 35.67 | 2.29 |
1690 | 3690 | 5.348997 | CACCCACACGTTTTGTTTTTACATT | 59.651 | 36.000 | 0.00 | 0.00 | 35.67 | 2.71 |
1691 | 3691 | 6.530534 | CACCCACACGTTTTGTTTTTACATTA | 59.469 | 34.615 | 0.00 | 0.00 | 35.67 | 1.90 |
1692 | 3692 | 7.063074 | CACCCACACGTTTTGTTTTTACATTAA | 59.937 | 33.333 | 0.00 | 0.00 | 35.67 | 1.40 |
1693 | 3693 | 7.601508 | ACCCACACGTTTTGTTTTTACATTAAA | 59.398 | 29.630 | 0.00 | 0.00 | 35.67 | 1.52 |
1694 | 3694 | 8.111224 | CCCACACGTTTTGTTTTTACATTAAAG | 58.889 | 33.333 | 0.00 | 0.00 | 35.67 | 1.85 |
1695 | 3695 | 8.648968 | CCACACGTTTTGTTTTTACATTAAAGT | 58.351 | 29.630 | 0.00 | 0.00 | 35.67 | 2.66 |
1739 | 3739 | 3.825143 | AAAACTGAAACTTGCCATGCT | 57.175 | 38.095 | 0.00 | 0.00 | 0.00 | 3.79 |
1740 | 3740 | 3.825143 | AAACTGAAACTTGCCATGCTT | 57.175 | 38.095 | 0.00 | 0.00 | 0.00 | 3.91 |
1741 | 3741 | 3.375782 | AACTGAAACTTGCCATGCTTC | 57.624 | 42.857 | 0.00 | 0.00 | 0.00 | 3.86 |
1742 | 3742 | 2.309613 | ACTGAAACTTGCCATGCTTCA | 58.690 | 42.857 | 0.00 | 0.00 | 0.00 | 3.02 |
1743 | 3743 | 2.035066 | ACTGAAACTTGCCATGCTTCAC | 59.965 | 45.455 | 0.00 | 0.00 | 0.00 | 3.18 |
1744 | 3744 | 2.030371 | TGAAACTTGCCATGCTTCACA | 58.970 | 42.857 | 0.00 | 0.00 | 0.00 | 3.58 |
1745 | 3745 | 2.429971 | TGAAACTTGCCATGCTTCACAA | 59.570 | 40.909 | 0.00 | 0.00 | 0.00 | 3.33 |
1746 | 3746 | 2.514205 | AACTTGCCATGCTTCACAAC | 57.486 | 45.000 | 0.00 | 0.00 | 0.00 | 3.32 |
1747 | 3747 | 1.696063 | ACTTGCCATGCTTCACAACT | 58.304 | 45.000 | 0.00 | 0.00 | 0.00 | 3.16 |
1748 | 3748 | 2.862541 | ACTTGCCATGCTTCACAACTA | 58.137 | 42.857 | 0.00 | 0.00 | 0.00 | 2.24 |
1749 | 3749 | 3.221771 | ACTTGCCATGCTTCACAACTAA | 58.778 | 40.909 | 0.00 | 0.00 | 0.00 | 2.24 |
1750 | 3750 | 3.636300 | ACTTGCCATGCTTCACAACTAAA | 59.364 | 39.130 | 0.00 | 0.00 | 0.00 | 1.85 |
1751 | 3751 | 4.281688 | ACTTGCCATGCTTCACAACTAAAT | 59.718 | 37.500 | 0.00 | 0.00 | 0.00 | 1.40 |
1752 | 3752 | 4.870123 | TGCCATGCTTCACAACTAAATT | 57.130 | 36.364 | 0.00 | 0.00 | 0.00 | 1.82 |
1753 | 3753 | 5.212532 | TGCCATGCTTCACAACTAAATTT | 57.787 | 34.783 | 0.00 | 0.00 | 0.00 | 1.82 |
1754 | 3754 | 4.989797 | TGCCATGCTTCACAACTAAATTTG | 59.010 | 37.500 | 0.00 | 0.00 | 0.00 | 2.32 |
1755 | 3755 | 4.143052 | GCCATGCTTCACAACTAAATTTGC | 60.143 | 41.667 | 0.00 | 0.00 | 0.00 | 3.68 |
1756 | 3756 | 5.232463 | CCATGCTTCACAACTAAATTTGCT | 58.768 | 37.500 | 0.00 | 0.00 | 0.00 | 3.91 |
1757 | 3757 | 6.389091 | CCATGCTTCACAACTAAATTTGCTA | 58.611 | 36.000 | 0.00 | 0.00 | 0.00 | 3.49 |
1758 | 3758 | 6.867816 | CCATGCTTCACAACTAAATTTGCTAA | 59.132 | 34.615 | 0.00 | 0.00 | 0.00 | 3.09 |
1759 | 3759 | 7.148755 | CCATGCTTCACAACTAAATTTGCTAAC | 60.149 | 37.037 | 0.00 | 0.00 | 0.00 | 2.34 |
1760 | 3760 | 6.800543 | TGCTTCACAACTAAATTTGCTAACA | 58.199 | 32.000 | 0.00 | 0.00 | 0.00 | 2.41 |
1761 | 3761 | 7.261325 | TGCTTCACAACTAAATTTGCTAACAA | 58.739 | 30.769 | 0.00 | 0.00 | 0.00 | 2.83 |
1783 | 3783 | 4.942761 | AAAACATGTGGACAGAATTGCT | 57.057 | 36.364 | 0.00 | 0.00 | 0.00 | 3.91 |
1784 | 3784 | 4.942761 | AAACATGTGGACAGAATTGCTT | 57.057 | 36.364 | 0.00 | 0.00 | 0.00 | 3.91 |
1785 | 3785 | 4.942761 | AACATGTGGACAGAATTGCTTT | 57.057 | 36.364 | 0.00 | 0.00 | 0.00 | 3.51 |
1786 | 3786 | 4.510038 | ACATGTGGACAGAATTGCTTTC | 57.490 | 40.909 | 0.00 | 0.00 | 34.31 | 2.62 |
1787 | 3787 | 3.058016 | ACATGTGGACAGAATTGCTTTCG | 60.058 | 43.478 | 0.00 | 0.00 | 39.46 | 3.46 |
1788 | 3788 | 2.571212 | TGTGGACAGAATTGCTTTCGT | 58.429 | 42.857 | 0.00 | 0.00 | 39.46 | 3.85 |
1789 | 3789 | 3.734463 | TGTGGACAGAATTGCTTTCGTA | 58.266 | 40.909 | 0.00 | 0.00 | 39.46 | 3.43 |
1790 | 3790 | 3.496884 | TGTGGACAGAATTGCTTTCGTAC | 59.503 | 43.478 | 0.00 | 0.00 | 39.46 | 3.67 |
1791 | 3791 | 3.071479 | TGGACAGAATTGCTTTCGTACC | 58.929 | 45.455 | 0.00 | 0.00 | 39.46 | 3.34 |
1792 | 3792 | 3.071479 | GGACAGAATTGCTTTCGTACCA | 58.929 | 45.455 | 0.00 | 0.00 | 39.46 | 3.25 |
1793 | 3793 | 3.120304 | GGACAGAATTGCTTTCGTACCAC | 60.120 | 47.826 | 0.00 | 0.00 | 39.46 | 4.16 |
1794 | 3794 | 3.472652 | ACAGAATTGCTTTCGTACCACA | 58.527 | 40.909 | 0.00 | 0.00 | 39.46 | 4.17 |
1795 | 3795 | 3.250040 | ACAGAATTGCTTTCGTACCACAC | 59.750 | 43.478 | 0.00 | 0.00 | 39.46 | 3.82 |
1808 | 3808 | 3.960237 | CACACGTGTGGGCGTTAT | 58.040 | 55.556 | 35.65 | 1.93 | 43.83 | 1.89 |
1809 | 3809 | 1.785321 | CACACGTGTGGGCGTTATC | 59.215 | 57.895 | 35.65 | 0.00 | 43.83 | 1.75 |
1810 | 3810 | 0.946700 | CACACGTGTGGGCGTTATCA | 60.947 | 55.000 | 35.65 | 0.00 | 43.83 | 2.15 |
1811 | 3811 | 0.036765 | ACACGTGTGGGCGTTATCAT | 60.037 | 50.000 | 22.71 | 0.00 | 43.83 | 2.45 |
1812 | 3812 | 1.083489 | CACGTGTGGGCGTTATCATT | 58.917 | 50.000 | 7.58 | 0.00 | 43.83 | 2.57 |
1813 | 3813 | 1.466950 | CACGTGTGGGCGTTATCATTT | 59.533 | 47.619 | 7.58 | 0.00 | 43.83 | 2.32 |
1814 | 3814 | 1.466950 | ACGTGTGGGCGTTATCATTTG | 59.533 | 47.619 | 0.00 | 0.00 | 43.04 | 2.32 |
1815 | 3815 | 1.202132 | CGTGTGGGCGTTATCATTTGG | 60.202 | 52.381 | 0.00 | 0.00 | 0.00 | 3.28 |
1816 | 3816 | 1.134175 | GTGTGGGCGTTATCATTTGGG | 59.866 | 52.381 | 0.00 | 0.00 | 0.00 | 4.12 |
1858 | 3858 | 6.749036 | ATAGTCCACCTCACCCTAATAAAG | 57.251 | 41.667 | 0.00 | 0.00 | 0.00 | 1.85 |
1863 | 3863 | 7.184022 | AGTCCACCTCACCCTAATAAAGTAAAT | 59.816 | 37.037 | 0.00 | 0.00 | 0.00 | 1.40 |
1864 | 3864 | 8.488668 | GTCCACCTCACCCTAATAAAGTAAATA | 58.511 | 37.037 | 0.00 | 0.00 | 0.00 | 1.40 |
1866 | 3866 | 9.689501 | CCACCTCACCCTAATAAAGTAAATAAA | 57.310 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
1903 | 3903 | 0.532573 | TCTCGAACTGCCCAGACATC | 59.467 | 55.000 | 1.69 | 0.00 | 0.00 | 3.06 |
1904 | 3904 | 0.534412 | CTCGAACTGCCCAGACATCT | 59.466 | 55.000 | 1.69 | 0.00 | 0.00 | 2.90 |
1922 | 3922 | 1.135199 | TCTGTTCGGTTGGTCGATAGC | 60.135 | 52.381 | 0.00 | 0.00 | 39.03 | 2.97 |
1924 | 3924 | 2.093890 | TGTTCGGTTGGTCGATAGCTA | 58.906 | 47.619 | 0.00 | 0.00 | 39.03 | 3.32 |
1926 | 3926 | 3.114065 | GTTCGGTTGGTCGATAGCTAAG | 58.886 | 50.000 | 0.00 | 0.00 | 39.03 | 2.18 |
1927 | 3927 | 2.646930 | TCGGTTGGTCGATAGCTAAGA | 58.353 | 47.619 | 0.00 | 0.00 | 33.92 | 2.10 |
1928 | 3928 | 2.357009 | TCGGTTGGTCGATAGCTAAGAC | 59.643 | 50.000 | 18.86 | 18.86 | 33.92 | 3.01 |
1929 | 3929 | 2.098607 | CGGTTGGTCGATAGCTAAGACA | 59.901 | 50.000 | 24.69 | 13.75 | 36.68 | 3.41 |
1930 | 3930 | 3.445857 | GGTTGGTCGATAGCTAAGACAC | 58.554 | 50.000 | 24.69 | 17.91 | 36.68 | 3.67 |
1931 | 3931 | 3.119245 | GGTTGGTCGATAGCTAAGACACA | 60.119 | 47.826 | 24.69 | 19.09 | 36.68 | 3.72 |
1934 | 3934 | 3.951680 | TGGTCGATAGCTAAGACACATCA | 59.048 | 43.478 | 24.69 | 15.23 | 36.68 | 3.07 |
1935 | 3935 | 4.584743 | TGGTCGATAGCTAAGACACATCAT | 59.415 | 41.667 | 24.69 | 0.00 | 36.68 | 2.45 |
1936 | 3936 | 4.920340 | GGTCGATAGCTAAGACACATCATG | 59.080 | 45.833 | 24.69 | 0.00 | 36.68 | 3.07 |
1938 | 3938 | 6.294010 | GGTCGATAGCTAAGACACATCATGTA | 60.294 | 42.308 | 24.69 | 0.00 | 43.56 | 2.29 |
1939 | 3939 | 7.309177 | GTCGATAGCTAAGACACATCATGTAT | 58.691 | 38.462 | 20.95 | 0.00 | 43.56 | 2.29 |
1979 | 4005 | 6.366061 | CCTTTTTGCCAGTAAGCTATTTTCAC | 59.634 | 38.462 | 0.00 | 0.00 | 0.00 | 3.18 |
1981 | 4007 | 3.352648 | TGCCAGTAAGCTATTTTCACCC | 58.647 | 45.455 | 0.00 | 0.00 | 0.00 | 4.61 |
1988 | 4014 | 7.308710 | CCAGTAAGCTATTTTCACCCGTTTTTA | 60.309 | 37.037 | 0.00 | 0.00 | 0.00 | 1.52 |
1989 | 4015 | 8.077386 | CAGTAAGCTATTTTCACCCGTTTTTAA | 58.923 | 33.333 | 0.00 | 0.00 | 0.00 | 1.52 |
2028 | 4105 | 7.604549 | CCATGCAAAATTCAGTGGCATATATA | 58.395 | 34.615 | 0.00 | 0.00 | 42.81 | 0.86 |
2040 | 4117 | 6.883217 | CAGTGGCATATATAAAGGAGAGCAAT | 59.117 | 38.462 | 0.00 | 0.00 | 0.00 | 3.56 |
2056 | 4133 | 4.406003 | AGAGCAATTGTCCGTATCCTAGTT | 59.594 | 41.667 | 7.40 | 0.00 | 0.00 | 2.24 |
2254 | 4449 | 6.586344 | TCTATGCTGGATTTCTTGGTAAGAG | 58.414 | 40.000 | 0.00 | 0.00 | 39.03 | 2.85 |
2305 | 4502 | 2.477375 | CCAACAAAGTTGATGCACATGC | 59.523 | 45.455 | 11.19 | 0.00 | 42.50 | 4.06 |
2329 | 4526 | 6.102663 | CCTTTGTTTCACAAATGTACCAACA | 58.897 | 36.000 | 2.62 | 0.00 | 45.79 | 3.33 |
2516 | 4720 | 3.032609 | GCAGATCGCATCGGACGG | 61.033 | 66.667 | 4.93 | 0.00 | 41.79 | 4.79 |
2564 | 4768 | 8.604640 | TTTTCACGGTGTAAGTATTTGTGATA | 57.395 | 30.769 | 8.17 | 0.00 | 35.12 | 2.15 |
2565 | 4769 | 7.585286 | TTCACGGTGTAAGTATTTGTGATAC | 57.415 | 36.000 | 8.17 | 0.00 | 35.12 | 2.24 |
2596 | 4800 | 5.417580 | TCCCTCCAAACGGATGAAAATTTAG | 59.582 | 40.000 | 0.00 | 0.00 | 30.13 | 1.85 |
2606 | 4810 | 6.586082 | ACGGATGAAAATTTAGCACAACATTC | 59.414 | 34.615 | 0.00 | 0.00 | 0.00 | 2.67 |
2636 | 4844 | 8.839310 | TTCATTTCCTTGTCTTTTAGAGAGAG | 57.161 | 34.615 | 0.00 | 0.00 | 34.31 | 3.20 |
2641 | 4849 | 8.894768 | TTCCTTGTCTTTTAGAGAGAGAAAAG | 57.105 | 34.615 | 0.00 | 0.00 | 41.83 | 2.27 |
2642 | 4850 | 6.931840 | TCCTTGTCTTTTAGAGAGAGAAAAGC | 59.068 | 38.462 | 2.88 | 0.48 | 40.77 | 3.51 |
2650 | 4858 | 4.167554 | AGAGAGAGAAAAGCGTACACTG | 57.832 | 45.455 | 0.00 | 0.00 | 0.00 | 3.66 |
2817 | 5026 | 1.637553 | AGGGACAGTTGCAGGAATGAT | 59.362 | 47.619 | 0.00 | 0.00 | 0.00 | 2.45 |
2880 | 5090 | 2.047002 | ATGTTATGGTTACACGGGGC | 57.953 | 50.000 | 0.00 | 0.00 | 0.00 | 5.80 |
2944 | 5154 | 6.736110 | AGCTTTGGGCATATCAATTGTAAT | 57.264 | 33.333 | 5.13 | 0.00 | 44.79 | 1.89 |
2996 | 5206 | 7.394816 | ACCTATGCATAGTCCATAATAACACC | 58.605 | 38.462 | 27.75 | 0.00 | 0.00 | 4.16 |
3000 | 5210 | 5.989168 | TGCATAGTCCATAATAACACCGAAG | 59.011 | 40.000 | 0.00 | 0.00 | 0.00 | 3.79 |
3293 | 5503 | 0.246086 | TTGCCCATTTTCATGTCCGC | 59.754 | 50.000 | 0.00 | 0.00 | 0.00 | 5.54 |
3355 | 5565 | 6.089283 | GTCTTTGCATATCAATTTTCGCAACA | 59.911 | 34.615 | 0.00 | 0.00 | 38.94 | 3.33 |
3597 | 5807 | 1.024579 | ATTGGCCGTTGATGTCGTCC | 61.025 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
4107 | 6317 | 7.851387 | TGTTTATCGTTGGCTCAATAATACA | 57.149 | 32.000 | 0.00 | 0.00 | 0.00 | 2.29 |
4134 | 6344 | 2.159382 | CCTGTAAACTCAACCCGCATT | 58.841 | 47.619 | 0.00 | 0.00 | 0.00 | 3.56 |
4148 | 6358 | 1.200716 | CCGCATTGCATCTGTGAGTTT | 59.799 | 47.619 | 9.69 | 0.00 | 0.00 | 2.66 |
4149 | 6359 | 2.512885 | CGCATTGCATCTGTGAGTTTC | 58.487 | 47.619 | 9.69 | 0.00 | 0.00 | 2.78 |
4150 | 6360 | 2.161012 | CGCATTGCATCTGTGAGTTTCT | 59.839 | 45.455 | 9.69 | 0.00 | 0.00 | 2.52 |
4151 | 6361 | 3.365666 | CGCATTGCATCTGTGAGTTTCTT | 60.366 | 43.478 | 9.69 | 0.00 | 0.00 | 2.52 |
4285 | 6495 | 3.248602 | GCTGCTTATCCCTTTATGACACG | 59.751 | 47.826 | 0.00 | 0.00 | 0.00 | 4.49 |
4346 | 6556 | 4.263911 | GCAGCAATGATTAAAAGCGTTCTC | 59.736 | 41.667 | 0.00 | 0.00 | 0.00 | 2.87 |
4368 | 6579 | 5.566623 | TCGCTGTAAGTACTTACGAGAATG | 58.433 | 41.667 | 30.86 | 21.99 | 46.19 | 2.67 |
4402 | 6615 | 6.946009 | AGGTTTAAGCCATTTTACTTCTAGCA | 59.054 | 34.615 | 11.28 | 0.00 | 0.00 | 3.49 |
4424 | 6637 | 5.718146 | CAAATGGTTACATACATGTGCCAA | 58.282 | 37.500 | 9.11 | 0.00 | 44.27 | 4.52 |
4457 | 6684 | 9.664332 | ATCATAGATAAGAATTAGTGCATGTCC | 57.336 | 33.333 | 0.00 | 0.00 | 31.76 | 4.02 |
4472 | 6700 | 8.483307 | AGTGCATGTCCAATTCAAATATTTTC | 57.517 | 30.769 | 0.00 | 0.00 | 0.00 | 2.29 |
4549 | 6777 | 6.145535 | CACTTCTCTTCTACAAAACAATGCC | 58.854 | 40.000 | 0.00 | 0.00 | 0.00 | 4.40 |
4615 | 6843 | 5.924475 | GAGATCTTTCTCACGGAAAACAA | 57.076 | 39.130 | 0.00 | 0.00 | 46.49 | 2.83 |
4762 | 6992 | 2.688666 | CTCCAGCAGGGGCAGGTA | 60.689 | 66.667 | 0.00 | 0.00 | 46.14 | 3.08 |
5357 | 7589 | 4.993705 | TTTCCATAGAACTGAACCAGGT | 57.006 | 40.909 | 0.00 | 0.00 | 35.51 | 4.00 |
5588 | 7824 | 2.568696 | CTATAGAGCAGTGCGTGTGT | 57.431 | 50.000 | 10.00 | 0.00 | 0.00 | 3.72 |
5609 | 7845 | 1.675310 | GTGTGGCACTGGCATGCTA | 60.675 | 57.895 | 18.92 | 11.28 | 45.38 | 3.49 |
5616 | 7852 | 1.534595 | GCACTGGCATGCTATAAGAGC | 59.465 | 52.381 | 18.92 | 15.35 | 45.68 | 4.09 |
5674 | 7923 | 1.676006 | GTAGCAGTGTTGTTGGCACTT | 59.324 | 47.619 | 0.00 | 0.00 | 43.87 | 3.16 |
5685 | 7934 | 3.561143 | TGTTGGCACTTGTGACCTAAAT | 58.439 | 40.909 | 3.97 | 0.00 | 0.00 | 1.40 |
5691 | 7944 | 4.458989 | GGCACTTGTGACCTAAATCAATCA | 59.541 | 41.667 | 4.79 | 0.00 | 0.00 | 2.57 |
5692 | 7945 | 5.392380 | GGCACTTGTGACCTAAATCAATCAG | 60.392 | 44.000 | 4.79 | 0.00 | 0.00 | 2.90 |
5697 | 7950 | 3.309954 | GTGACCTAAATCAATCAGTCGGC | 59.690 | 47.826 | 0.00 | 0.00 | 0.00 | 5.54 |
5699 | 7952 | 2.238646 | ACCTAAATCAATCAGTCGGCCA | 59.761 | 45.455 | 2.24 | 0.00 | 0.00 | 5.36 |
5720 | 7990 | 0.251033 | TTGCAGTCTTGGCATGCTCT | 60.251 | 50.000 | 18.92 | 5.92 | 41.58 | 4.09 |
5736 | 8006 | 2.028658 | TGCTCTGTTGCTCTCCTAGTTG | 60.029 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
5737 | 8007 | 2.028567 | GCTCTGTTGCTCTCCTAGTTGT | 60.029 | 50.000 | 0.00 | 0.00 | 0.00 | 3.32 |
5739 | 8009 | 3.993081 | CTCTGTTGCTCTCCTAGTTGTTG | 59.007 | 47.826 | 0.00 | 0.00 | 0.00 | 3.33 |
5740 | 8010 | 3.388024 | TCTGTTGCTCTCCTAGTTGTTGT | 59.612 | 43.478 | 0.00 | 0.00 | 0.00 | 3.32 |
5741 | 8011 | 4.130118 | CTGTTGCTCTCCTAGTTGTTGTT | 58.870 | 43.478 | 0.00 | 0.00 | 0.00 | 2.83 |
5742 | 8012 | 5.069914 | TCTGTTGCTCTCCTAGTTGTTGTTA | 59.930 | 40.000 | 0.00 | 0.00 | 0.00 | 2.41 |
5743 | 8013 | 5.297547 | TGTTGCTCTCCTAGTTGTTGTTAG | 58.702 | 41.667 | 0.00 | 0.00 | 0.00 | 2.34 |
5744 | 8014 | 3.926616 | TGCTCTCCTAGTTGTTGTTAGC | 58.073 | 45.455 | 0.00 | 0.00 | 0.00 | 3.09 |
5745 | 8015 | 3.263261 | GCTCTCCTAGTTGTTGTTAGCC | 58.737 | 50.000 | 0.00 | 0.00 | 0.00 | 3.93 |
5747 | 8017 | 4.159879 | GCTCTCCTAGTTGTTGTTAGCCTA | 59.840 | 45.833 | 0.00 | 0.00 | 0.00 | 3.93 |
5750 | 8020 | 5.128827 | TCTCCTAGTTGTTGTTAGCCTATGG | 59.871 | 44.000 | 0.00 | 0.00 | 0.00 | 2.74 |
5751 | 8021 | 4.781087 | TCCTAGTTGTTGTTAGCCTATGGT | 59.219 | 41.667 | 0.00 | 0.00 | 0.00 | 3.55 |
5752 | 8022 | 5.959594 | TCCTAGTTGTTGTTAGCCTATGGTA | 59.040 | 40.000 | 0.00 | 0.00 | 0.00 | 3.25 |
5753 | 8023 | 6.047231 | CCTAGTTGTTGTTAGCCTATGGTAC | 58.953 | 44.000 | 0.00 | 0.00 | 0.00 | 3.34 |
5754 | 8024 | 4.501071 | AGTTGTTGTTAGCCTATGGTACG | 58.499 | 43.478 | 0.00 | 0.00 | 0.00 | 3.67 |
5755 | 8025 | 4.020839 | AGTTGTTGTTAGCCTATGGTACGT | 60.021 | 41.667 | 0.00 | 0.00 | 0.00 | 3.57 |
5757 | 8027 | 4.997565 | TGTTGTTAGCCTATGGTACGTAC | 58.002 | 43.478 | 17.56 | 17.56 | 0.00 | 3.67 |
5844 | 8125 | 2.282180 | TTTGCCCTGCTTCGGGTC | 60.282 | 61.111 | 7.89 | 2.34 | 46.47 | 4.46 |
5845 | 8126 | 4.697756 | TTGCCCTGCTTCGGGTCG | 62.698 | 66.667 | 7.89 | 0.00 | 46.47 | 4.79 |
5849 | 8130 | 4.148825 | CCTGCTTCGGGTCGGAGG | 62.149 | 72.222 | 0.00 | 0.00 | 32.35 | 4.30 |
5850 | 8131 | 3.068691 | CTGCTTCGGGTCGGAGGA | 61.069 | 66.667 | 0.00 | 0.00 | 32.35 | 3.71 |
5852 | 8133 | 2.754658 | GCTTCGGGTCGGAGGAGA | 60.755 | 66.667 | 0.00 | 0.00 | 32.35 | 3.71 |
5912 | 8208 | 1.731720 | GGGTGCTGAGATTGACTGAC | 58.268 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
5913 | 8209 | 1.002430 | GGGTGCTGAGATTGACTGACA | 59.998 | 52.381 | 0.00 | 0.00 | 0.00 | 3.58 |
5914 | 8210 | 2.344950 | GGTGCTGAGATTGACTGACAG | 58.655 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
5924 | 8220 | 0.037882 | TGACTGACAGCAGCAGTAGC | 60.038 | 55.000 | 1.25 | 0.00 | 45.94 | 3.58 |
5999 | 8307 | 1.228003 | TGGTGAAACGCGGATTGGT | 60.228 | 52.632 | 12.47 | 0.00 | 38.12 | 3.67 |
6015 | 8323 | 0.179040 | TGGTTCTTCGGGTTGTGGTC | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
6376 | 8684 | 0.178975 | CCAGCTCTCTCCCGTATCCT | 60.179 | 60.000 | 0.00 | 0.00 | 0.00 | 3.24 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
16 | 17 | 6.930667 | AAGTGGTTACTGACACGTATTTTT | 57.069 | 33.333 | 0.00 | 0.00 | 42.25 | 1.94 |
17 | 18 | 7.658575 | ACATAAGTGGTTACTGACACGTATTTT | 59.341 | 33.333 | 0.00 | 0.00 | 39.22 | 1.82 |
18 | 19 | 7.156673 | ACATAAGTGGTTACTGACACGTATTT | 58.843 | 34.615 | 0.00 | 0.00 | 39.22 | 1.40 |
22 | 23 | 4.595762 | ACATAAGTGGTTACTGACACGT | 57.404 | 40.909 | 0.00 | 0.00 | 42.25 | 4.49 |
27 | 28 | 3.681593 | GCCCAACATAAGTGGTTACTGA | 58.318 | 45.455 | 0.00 | 0.00 | 37.19 | 3.41 |
39 | 40 | 2.570415 | TCCTTTTGTCGCCCAACATA | 57.430 | 45.000 | 0.00 | 0.00 | 31.20 | 2.29 |
48 | 49 | 5.237344 | GGTCATCTTGGATATCCTTTTGTCG | 59.763 | 44.000 | 22.35 | 5.72 | 36.82 | 4.35 |
71 | 72 | 0.109723 | TTTTCCCTGGTCGGAAGTGG | 59.890 | 55.000 | 0.00 | 0.00 | 42.81 | 4.00 |
128 | 129 | 5.007921 | CCCCTGCACAAAGAAAAGAAAAATG | 59.992 | 40.000 | 0.00 | 0.00 | 0.00 | 2.32 |
144 | 151 | 1.815003 | CACATCTTCTTTCCCCTGCAC | 59.185 | 52.381 | 0.00 | 0.00 | 0.00 | 4.57 |
171 | 178 | 8.597227 | ACAAAAACAAAAATAAAACGCCTACTC | 58.403 | 29.630 | 0.00 | 0.00 | 0.00 | 2.59 |
183 | 190 | 8.863872 | TTCTTTTCCCCACAAAAACAAAAATA | 57.136 | 26.923 | 0.00 | 0.00 | 0.00 | 1.40 |
213 | 220 | 2.829043 | TTCACCAATCTCGTCCGCCG | 62.829 | 60.000 | 0.00 | 0.00 | 38.13 | 6.46 |
314 | 324 | 2.016318 | CTGATGCATTCCACGGCTTAA | 58.984 | 47.619 | 0.00 | 0.00 | 0.00 | 1.85 |
321 | 331 | 4.142622 | TGAAATCGAACTGATGCATTCCAC | 60.143 | 41.667 | 0.00 | 0.00 | 37.39 | 4.02 |
357 | 367 | 8.832735 | GGGATTTAAGGTGGATGGAGTATATAA | 58.167 | 37.037 | 0.00 | 0.00 | 0.00 | 0.98 |
415 | 433 | 3.056465 | AGCTTGGTCGTCTCTCCTTTAAG | 60.056 | 47.826 | 0.00 | 0.00 | 0.00 | 1.85 |
455 | 473 | 2.617532 | GCAGAGCTGAGATTTCTGGGTT | 60.618 | 50.000 | 0.85 | 0.00 | 38.94 | 4.11 |
456 | 474 | 1.065564 | GCAGAGCTGAGATTTCTGGGT | 60.066 | 52.381 | 0.85 | 0.00 | 38.94 | 4.51 |
499 | 518 | 2.753043 | ATGCAAAGGCCGAGGCTG | 60.753 | 61.111 | 14.33 | 5.80 | 38.81 | 4.85 |
504 | 523 | 0.250684 | TGTTCTGATGCAAAGGCCGA | 60.251 | 50.000 | 0.00 | 0.00 | 40.13 | 5.54 |
523 | 542 | 3.534554 | TGAGATTACAGTCGCATGCATT | 58.465 | 40.909 | 19.57 | 0.00 | 0.00 | 3.56 |
530 | 549 | 2.222908 | GCAAAGCTGAGATTACAGTCGC | 60.223 | 50.000 | 0.00 | 0.00 | 39.73 | 5.19 |
532 | 551 | 3.126000 | GGTGCAAAGCTGAGATTACAGTC | 59.874 | 47.826 | 0.00 | 0.00 | 39.73 | 3.51 |
535 | 554 | 3.076621 | CAGGTGCAAAGCTGAGATTACA | 58.923 | 45.455 | 0.00 | 0.00 | 0.00 | 2.41 |
540 | 559 | 1.601759 | GCCAGGTGCAAAGCTGAGA | 60.602 | 57.895 | 6.50 | 0.00 | 40.77 | 3.27 |
591 | 610 | 3.190118 | AGGTGAAGAAGGTACGTAGTTCG | 59.810 | 47.826 | 0.00 | 0.00 | 37.78 | 3.95 |
593 | 612 | 5.295152 | CAAAGGTGAAGAAGGTACGTAGTT | 58.705 | 41.667 | 0.00 | 0.00 | 37.78 | 2.24 |
641 | 669 | 3.427243 | CAGCTTACAGCAGTACTACGTC | 58.573 | 50.000 | 0.00 | 0.00 | 45.56 | 4.34 |
647 | 675 | 4.003648 | ACAAATCCAGCTTACAGCAGTAC | 58.996 | 43.478 | 0.00 | 0.00 | 45.56 | 2.73 |
648 | 676 | 4.020218 | AGACAAATCCAGCTTACAGCAGTA | 60.020 | 41.667 | 0.00 | 0.00 | 45.56 | 2.74 |
649 | 677 | 3.077359 | GACAAATCCAGCTTACAGCAGT | 58.923 | 45.455 | 0.00 | 0.00 | 45.56 | 4.40 |
650 | 678 | 3.126514 | CAGACAAATCCAGCTTACAGCAG | 59.873 | 47.826 | 0.00 | 0.00 | 45.56 | 4.24 |
651 | 679 | 3.076621 | CAGACAAATCCAGCTTACAGCA | 58.923 | 45.455 | 0.00 | 0.00 | 45.56 | 4.41 |
676 | 704 | 0.904649 | ACCAGATCACCATCGCTTCA | 59.095 | 50.000 | 0.00 | 0.00 | 33.75 | 3.02 |
677 | 705 | 1.293924 | CACCAGATCACCATCGCTTC | 58.706 | 55.000 | 0.00 | 0.00 | 33.75 | 3.86 |
678 | 706 | 0.745845 | GCACCAGATCACCATCGCTT | 60.746 | 55.000 | 0.00 | 0.00 | 33.75 | 4.68 |
679 | 707 | 1.153289 | GCACCAGATCACCATCGCT | 60.153 | 57.895 | 0.00 | 0.00 | 33.75 | 4.93 |
680 | 708 | 2.528743 | CGCACCAGATCACCATCGC | 61.529 | 63.158 | 0.00 | 0.00 | 33.75 | 4.58 |
891 | 933 | 2.040606 | CCGGGGAAGGAAGGAGGA | 59.959 | 66.667 | 0.00 | 0.00 | 0.00 | 3.71 |
892 | 934 | 3.798511 | GCCGGGGAAGGAAGGAGG | 61.799 | 72.222 | 2.18 | 0.00 | 0.00 | 4.30 |
893 | 935 | 2.689034 | AGCCGGGGAAGGAAGGAG | 60.689 | 66.667 | 2.18 | 0.00 | 0.00 | 3.69 |
992 | 1069 | 1.769026 | CGACTCTCCCATCCTTCTCA | 58.231 | 55.000 | 0.00 | 0.00 | 0.00 | 3.27 |
1173 | 1250 | 2.972348 | TCTTGGTTGTAGACAGGGAGT | 58.028 | 47.619 | 0.00 | 0.00 | 0.00 | 3.85 |
1194 | 1389 | 6.545666 | CCATGCCAGTACCAGTAATTTAATCA | 59.454 | 38.462 | 0.00 | 0.00 | 0.00 | 2.57 |
1225 | 1420 | 3.501445 | GCAAGACAAGACAAGAGCAAGAT | 59.499 | 43.478 | 0.00 | 0.00 | 0.00 | 2.40 |
1227 | 1422 | 2.877168 | AGCAAGACAAGACAAGAGCAAG | 59.123 | 45.455 | 0.00 | 0.00 | 0.00 | 4.01 |
1228 | 1423 | 2.874701 | GAGCAAGACAAGACAAGAGCAA | 59.125 | 45.455 | 0.00 | 0.00 | 0.00 | 3.91 |
1229 | 1424 | 2.487934 | GAGCAAGACAAGACAAGAGCA | 58.512 | 47.619 | 0.00 | 0.00 | 0.00 | 4.26 |
1230 | 1425 | 1.803555 | GGAGCAAGACAAGACAAGAGC | 59.196 | 52.381 | 0.00 | 0.00 | 0.00 | 4.09 |
1329 | 3181 | 7.301054 | GCAGAACGCAGAAGCATTATTATTAT | 58.699 | 34.615 | 0.00 | 0.00 | 42.27 | 1.28 |
1431 | 3290 | 3.933061 | GAGGATCAGTCATGTTGGGAACC | 60.933 | 52.174 | 0.00 | 0.00 | 43.44 | 3.62 |
1432 | 3291 | 3.054802 | AGAGGATCAGTCATGTTGGGAAC | 60.055 | 47.826 | 0.00 | 0.00 | 37.82 | 3.62 |
1443 | 3302 | 1.408702 | GACAGGCAGAGAGGATCAGTC | 59.591 | 57.143 | 0.00 | 0.00 | 37.82 | 3.51 |
1453 | 3312 | 2.681778 | AGGGACGGACAGGCAGAG | 60.682 | 66.667 | 0.00 | 0.00 | 0.00 | 3.35 |
1458 | 3317 | 1.304547 | AGACAGAGGGACGGACAGG | 60.305 | 63.158 | 0.00 | 0.00 | 0.00 | 4.00 |
1460 | 3319 | 1.304217 | GGAGACAGAGGGACGGACA | 60.304 | 63.158 | 0.00 | 0.00 | 0.00 | 4.02 |
1473 | 3332 | 4.268359 | AGCTGAAAAAGATGGATGGAGAC | 58.732 | 43.478 | 0.00 | 0.00 | 0.00 | 3.36 |
1474 | 3333 | 4.581309 | AGCTGAAAAAGATGGATGGAGA | 57.419 | 40.909 | 0.00 | 0.00 | 0.00 | 3.71 |
1475 | 3334 | 5.408356 | CAAAGCTGAAAAAGATGGATGGAG | 58.592 | 41.667 | 0.00 | 0.00 | 0.00 | 3.86 |
1476 | 3335 | 4.322198 | GCAAAGCTGAAAAAGATGGATGGA | 60.322 | 41.667 | 0.00 | 0.00 | 0.00 | 3.41 |
1477 | 3336 | 3.930848 | GCAAAGCTGAAAAAGATGGATGG | 59.069 | 43.478 | 0.00 | 0.00 | 0.00 | 3.51 |
1479 | 3338 | 3.367703 | CGGCAAAGCTGAAAAAGATGGAT | 60.368 | 43.478 | 0.00 | 0.00 | 37.02 | 3.41 |
1480 | 3339 | 2.030007 | CGGCAAAGCTGAAAAAGATGGA | 60.030 | 45.455 | 0.00 | 0.00 | 37.02 | 3.41 |
1481 | 3340 | 2.030007 | TCGGCAAAGCTGAAAAAGATGG | 60.030 | 45.455 | 0.00 | 0.00 | 41.31 | 3.51 |
1579 | 3578 | 4.664150 | AGAGTGAAATCCAGCTAGCTAC | 57.336 | 45.455 | 18.86 | 10.25 | 0.00 | 3.58 |
1580 | 3579 | 4.711846 | TGAAGAGTGAAATCCAGCTAGCTA | 59.288 | 41.667 | 18.86 | 2.62 | 0.00 | 3.32 |
1581 | 3580 | 3.517100 | TGAAGAGTGAAATCCAGCTAGCT | 59.483 | 43.478 | 12.68 | 12.68 | 0.00 | 3.32 |
1582 | 3581 | 3.866651 | TGAAGAGTGAAATCCAGCTAGC | 58.133 | 45.455 | 6.62 | 6.62 | 0.00 | 3.42 |
1607 | 3607 | 4.048504 | GTCCTAAAACAAACACACATGCC | 58.951 | 43.478 | 0.00 | 0.00 | 0.00 | 4.40 |
1609 | 3609 | 3.728718 | GCGTCCTAAAACAAACACACATG | 59.271 | 43.478 | 0.00 | 0.00 | 0.00 | 3.21 |
1610 | 3610 | 3.243267 | GGCGTCCTAAAACAAACACACAT | 60.243 | 43.478 | 0.00 | 0.00 | 0.00 | 3.21 |
1613 | 3613 | 1.331138 | CGGCGTCCTAAAACAAACACA | 59.669 | 47.619 | 0.00 | 0.00 | 0.00 | 3.72 |
1627 | 3627 | 0.989890 | GTGTGACAGTTATCGGCGTC | 59.010 | 55.000 | 6.85 | 0.00 | 0.00 | 5.19 |
1628 | 3628 | 0.731514 | CGTGTGACAGTTATCGGCGT | 60.732 | 55.000 | 6.85 | 0.00 | 0.00 | 5.68 |
1629 | 3629 | 0.731514 | ACGTGTGACAGTTATCGGCG | 60.732 | 55.000 | 0.00 | 0.00 | 0.00 | 6.46 |
1630 | 3630 | 0.713883 | CACGTGTGACAGTTATCGGC | 59.286 | 55.000 | 7.58 | 0.00 | 0.00 | 5.54 |
1631 | 3631 | 2.060326 | ACACGTGTGACAGTTATCGG | 57.940 | 50.000 | 22.71 | 0.00 | 0.00 | 4.18 |
1637 | 3637 | 3.776680 | ACATGCCACACGTGTGACAGT | 62.777 | 52.381 | 42.33 | 31.63 | 46.95 | 3.55 |
1638 | 3638 | 1.159713 | ACATGCCACACGTGTGACAG | 61.160 | 55.000 | 42.33 | 31.08 | 46.95 | 3.51 |
1639 | 3639 | 1.153269 | ACATGCCACACGTGTGACA | 60.153 | 52.632 | 42.33 | 38.43 | 46.95 | 3.58 |
1640 | 3640 | 3.731136 | ACATGCCACACGTGTGAC | 58.269 | 55.556 | 42.33 | 34.44 | 46.95 | 3.67 |
1644 | 3644 | 2.409012 | TGTTACTACATGCCACACGTG | 58.591 | 47.619 | 15.48 | 15.48 | 41.41 | 4.49 |
1645 | 3645 | 2.823924 | TGTTACTACATGCCACACGT | 57.176 | 45.000 | 0.00 | 0.00 | 0.00 | 4.49 |
1646 | 3646 | 3.062099 | GTGATGTTACTACATGCCACACG | 59.938 | 47.826 | 0.00 | 0.00 | 44.90 | 4.49 |
1647 | 3647 | 3.374058 | GGTGATGTTACTACATGCCACAC | 59.626 | 47.826 | 10.38 | 0.00 | 44.90 | 3.82 |
1648 | 3648 | 3.605634 | GGTGATGTTACTACATGCCACA | 58.394 | 45.455 | 10.38 | 0.00 | 44.90 | 4.17 |
1649 | 3649 | 2.943033 | GGGTGATGTTACTACATGCCAC | 59.057 | 50.000 | 0.00 | 0.00 | 44.90 | 5.01 |
1650 | 3650 | 2.573915 | TGGGTGATGTTACTACATGCCA | 59.426 | 45.455 | 0.00 | 0.00 | 44.90 | 4.92 |
1651 | 3651 | 2.943033 | GTGGGTGATGTTACTACATGCC | 59.057 | 50.000 | 0.00 | 0.00 | 44.90 | 4.40 |
1652 | 3652 | 3.374058 | GTGTGGGTGATGTTACTACATGC | 59.626 | 47.826 | 0.00 | 0.00 | 44.90 | 4.06 |
1653 | 3653 | 3.616821 | CGTGTGGGTGATGTTACTACATG | 59.383 | 47.826 | 0.00 | 0.00 | 44.90 | 3.21 |
1655 | 3655 | 2.629137 | ACGTGTGGGTGATGTTACTACA | 59.371 | 45.455 | 0.00 | 0.00 | 38.95 | 2.74 |
1656 | 3656 | 3.308438 | ACGTGTGGGTGATGTTACTAC | 57.692 | 47.619 | 0.00 | 0.00 | 0.00 | 2.73 |
1657 | 3657 | 4.339872 | AAACGTGTGGGTGATGTTACTA | 57.660 | 40.909 | 0.00 | 0.00 | 0.00 | 1.82 |
1658 | 3658 | 2.922740 | AACGTGTGGGTGATGTTACT | 57.077 | 45.000 | 0.00 | 0.00 | 0.00 | 2.24 |
1659 | 3659 | 3.065648 | ACAAAACGTGTGGGTGATGTTAC | 59.934 | 43.478 | 0.00 | 0.00 | 39.72 | 2.50 |
1660 | 3660 | 3.280295 | ACAAAACGTGTGGGTGATGTTA | 58.720 | 40.909 | 0.00 | 0.00 | 39.72 | 2.41 |
1661 | 3661 | 2.096248 | ACAAAACGTGTGGGTGATGTT | 58.904 | 42.857 | 0.00 | 0.00 | 39.72 | 2.71 |
1662 | 3662 | 1.757682 | ACAAAACGTGTGGGTGATGT | 58.242 | 45.000 | 0.00 | 0.00 | 39.72 | 3.06 |
1663 | 3663 | 2.861462 | AACAAAACGTGTGGGTGATG | 57.139 | 45.000 | 0.00 | 0.00 | 40.60 | 3.07 |
1664 | 3664 | 3.878160 | AAAACAAAACGTGTGGGTGAT | 57.122 | 38.095 | 0.00 | 0.00 | 40.60 | 3.06 |
1665 | 3665 | 3.662247 | AAAAACAAAACGTGTGGGTGA | 57.338 | 38.095 | 0.00 | 0.00 | 40.60 | 4.02 |
1666 | 3666 | 4.235360 | TGTAAAAACAAAACGTGTGGGTG | 58.765 | 39.130 | 0.00 | 0.00 | 40.60 | 4.61 |
1667 | 3667 | 4.516365 | TGTAAAAACAAAACGTGTGGGT | 57.484 | 36.364 | 0.00 | 0.00 | 40.60 | 4.51 |
1668 | 3668 | 7.521509 | TTAATGTAAAAACAAAACGTGTGGG | 57.478 | 32.000 | 0.00 | 0.00 | 40.60 | 4.61 |
1669 | 3669 | 8.648968 | ACTTTAATGTAAAAACAAAACGTGTGG | 58.351 | 29.630 | 0.00 | 0.00 | 40.60 | 4.17 |
1718 | 3718 | 4.141233 | AGCATGGCAAGTTTCAGTTTTT | 57.859 | 36.364 | 0.00 | 0.00 | 0.00 | 1.94 |
1719 | 3719 | 3.825143 | AGCATGGCAAGTTTCAGTTTT | 57.175 | 38.095 | 0.00 | 0.00 | 0.00 | 2.43 |
1720 | 3720 | 3.132646 | TGAAGCATGGCAAGTTTCAGTTT | 59.867 | 39.130 | 16.28 | 0.00 | 32.43 | 2.66 |
1721 | 3721 | 2.694628 | TGAAGCATGGCAAGTTTCAGTT | 59.305 | 40.909 | 16.28 | 0.00 | 32.43 | 3.16 |
1722 | 3722 | 2.035066 | GTGAAGCATGGCAAGTTTCAGT | 59.965 | 45.455 | 19.80 | 0.00 | 36.98 | 3.41 |
1723 | 3723 | 2.034939 | TGTGAAGCATGGCAAGTTTCAG | 59.965 | 45.455 | 19.80 | 0.00 | 36.98 | 3.02 |
1724 | 3724 | 2.030371 | TGTGAAGCATGGCAAGTTTCA | 58.970 | 42.857 | 16.28 | 16.28 | 34.50 | 2.69 |
1725 | 3725 | 2.796593 | GTTGTGAAGCATGGCAAGTTTC | 59.203 | 45.455 | 11.63 | 11.63 | 0.00 | 2.78 |
1726 | 3726 | 2.431782 | AGTTGTGAAGCATGGCAAGTTT | 59.568 | 40.909 | 0.00 | 0.00 | 0.00 | 2.66 |
1727 | 3727 | 2.034124 | AGTTGTGAAGCATGGCAAGTT | 58.966 | 42.857 | 0.00 | 0.00 | 0.00 | 2.66 |
1728 | 3728 | 1.696063 | AGTTGTGAAGCATGGCAAGT | 58.304 | 45.000 | 0.00 | 0.00 | 0.00 | 3.16 |
1729 | 3729 | 3.921119 | TTAGTTGTGAAGCATGGCAAG | 57.079 | 42.857 | 0.00 | 0.00 | 0.00 | 4.01 |
1730 | 3730 | 4.870123 | ATTTAGTTGTGAAGCATGGCAA | 57.130 | 36.364 | 0.00 | 0.00 | 0.00 | 4.52 |
1731 | 3731 | 4.870123 | AATTTAGTTGTGAAGCATGGCA | 57.130 | 36.364 | 0.00 | 0.00 | 0.00 | 4.92 |
1732 | 3732 | 4.143052 | GCAAATTTAGTTGTGAAGCATGGC | 60.143 | 41.667 | 0.00 | 0.00 | 0.00 | 4.40 |
1733 | 3733 | 5.232463 | AGCAAATTTAGTTGTGAAGCATGG | 58.768 | 37.500 | 0.00 | 0.00 | 0.00 | 3.66 |
1734 | 3734 | 7.381948 | TGTTAGCAAATTTAGTTGTGAAGCATG | 59.618 | 33.333 | 0.00 | 0.00 | 0.00 | 4.06 |
1735 | 3735 | 7.432869 | TGTTAGCAAATTTAGTTGTGAAGCAT | 58.567 | 30.769 | 0.00 | 0.00 | 0.00 | 3.79 |
1736 | 3736 | 6.800543 | TGTTAGCAAATTTAGTTGTGAAGCA | 58.199 | 32.000 | 0.00 | 0.00 | 0.00 | 3.91 |
1737 | 3737 | 7.692908 | TTGTTAGCAAATTTAGTTGTGAAGC | 57.307 | 32.000 | 0.00 | 0.00 | 0.00 | 3.86 |
1761 | 3761 | 5.280654 | AGCAATTCTGTCCACATGTTTTT | 57.719 | 34.783 | 0.00 | 0.00 | 0.00 | 1.94 |
1762 | 3762 | 4.942761 | AGCAATTCTGTCCACATGTTTT | 57.057 | 36.364 | 0.00 | 0.00 | 0.00 | 2.43 |
1763 | 3763 | 4.942761 | AAGCAATTCTGTCCACATGTTT | 57.057 | 36.364 | 0.00 | 0.00 | 0.00 | 2.83 |
1764 | 3764 | 4.557296 | CGAAAGCAATTCTGTCCACATGTT | 60.557 | 41.667 | 0.00 | 0.00 | 35.79 | 2.71 |
1765 | 3765 | 3.058016 | CGAAAGCAATTCTGTCCACATGT | 60.058 | 43.478 | 0.00 | 0.00 | 35.79 | 3.21 |
1766 | 3766 | 3.058016 | ACGAAAGCAATTCTGTCCACATG | 60.058 | 43.478 | 0.00 | 0.00 | 35.79 | 3.21 |
1767 | 3767 | 3.149196 | ACGAAAGCAATTCTGTCCACAT | 58.851 | 40.909 | 0.00 | 0.00 | 35.79 | 3.21 |
1768 | 3768 | 2.571212 | ACGAAAGCAATTCTGTCCACA | 58.429 | 42.857 | 0.00 | 0.00 | 35.79 | 4.17 |
1769 | 3769 | 3.120304 | GGTACGAAAGCAATTCTGTCCAC | 60.120 | 47.826 | 0.00 | 0.00 | 35.79 | 4.02 |
1770 | 3770 | 3.071479 | GGTACGAAAGCAATTCTGTCCA | 58.929 | 45.455 | 0.00 | 0.00 | 35.79 | 4.02 |
1771 | 3771 | 3.071479 | TGGTACGAAAGCAATTCTGTCC | 58.929 | 45.455 | 0.00 | 0.00 | 35.79 | 4.02 |
1772 | 3772 | 3.496884 | TGTGGTACGAAAGCAATTCTGTC | 59.503 | 43.478 | 0.00 | 0.00 | 37.33 | 3.51 |
1773 | 3773 | 3.250040 | GTGTGGTACGAAAGCAATTCTGT | 59.750 | 43.478 | 0.00 | 0.00 | 37.33 | 3.41 |
1774 | 3774 | 3.810373 | GTGTGGTACGAAAGCAATTCTG | 58.190 | 45.455 | 0.00 | 0.00 | 37.33 | 3.02 |
1795 | 3795 | 1.202132 | CCAAATGATAACGCCCACACG | 60.202 | 52.381 | 0.00 | 0.00 | 39.50 | 4.49 |
1796 | 3796 | 1.134175 | CCCAAATGATAACGCCCACAC | 59.866 | 52.381 | 0.00 | 0.00 | 0.00 | 3.82 |
1797 | 3797 | 1.272203 | ACCCAAATGATAACGCCCACA | 60.272 | 47.619 | 0.00 | 0.00 | 0.00 | 4.17 |
1798 | 3798 | 1.470051 | ACCCAAATGATAACGCCCAC | 58.530 | 50.000 | 0.00 | 0.00 | 0.00 | 4.61 |
1799 | 3799 | 1.821753 | CAACCCAAATGATAACGCCCA | 59.178 | 47.619 | 0.00 | 0.00 | 0.00 | 5.36 |
1800 | 3800 | 1.822371 | ACAACCCAAATGATAACGCCC | 59.178 | 47.619 | 0.00 | 0.00 | 0.00 | 6.13 |
1801 | 3801 | 3.586100 | AACAACCCAAATGATAACGCC | 57.414 | 42.857 | 0.00 | 0.00 | 0.00 | 5.68 |
1802 | 3802 | 6.864165 | TCTTAAAACAACCCAAATGATAACGC | 59.136 | 34.615 | 0.00 | 0.00 | 0.00 | 4.84 |
1803 | 3803 | 8.079809 | AGTCTTAAAACAACCCAAATGATAACG | 58.920 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
1806 | 3806 | 9.575868 | TGTAGTCTTAAAACAACCCAAATGATA | 57.424 | 29.630 | 0.00 | 0.00 | 0.00 | 2.15 |
1807 | 3807 | 8.472007 | TGTAGTCTTAAAACAACCCAAATGAT | 57.528 | 30.769 | 0.00 | 0.00 | 0.00 | 2.45 |
1808 | 3808 | 7.883391 | TGTAGTCTTAAAACAACCCAAATGA | 57.117 | 32.000 | 0.00 | 0.00 | 0.00 | 2.57 |
1830 | 3830 | 4.008916 | AGGGTGAGGTGGACTATTATGT | 57.991 | 45.455 | 0.00 | 0.00 | 0.00 | 2.29 |
1871 | 3871 | 5.583854 | GGCAGTTCGAGAATATCATGCATAT | 59.416 | 40.000 | 0.00 | 0.00 | 34.17 | 1.78 |
1872 | 3872 | 4.931601 | GGCAGTTCGAGAATATCATGCATA | 59.068 | 41.667 | 0.00 | 0.00 | 34.17 | 3.14 |
1873 | 3873 | 3.750130 | GGCAGTTCGAGAATATCATGCAT | 59.250 | 43.478 | 0.00 | 0.00 | 34.17 | 3.96 |
1883 | 3883 | 0.976641 | ATGTCTGGGCAGTTCGAGAA | 59.023 | 50.000 | 0.00 | 0.00 | 0.00 | 2.87 |
1903 | 3903 | 1.135083 | AGCTATCGACCAACCGAACAG | 60.135 | 52.381 | 0.00 | 0.00 | 42.22 | 3.16 |
1904 | 3904 | 0.892755 | AGCTATCGACCAACCGAACA | 59.107 | 50.000 | 0.00 | 0.00 | 42.22 | 3.18 |
1922 | 3922 | 8.822652 | TTGCATAGATACATGATGTGTCTTAG | 57.177 | 34.615 | 26.03 | 19.61 | 44.75 | 2.18 |
1924 | 3924 | 8.510243 | TTTTGCATAGATACATGATGTGTCTT | 57.490 | 30.769 | 26.03 | 13.46 | 44.75 | 3.01 |
1926 | 3926 | 9.740239 | AAATTTTGCATAGATACATGATGTGTC | 57.260 | 29.630 | 13.58 | 13.58 | 42.29 | 3.67 |
1979 | 4005 | 5.558083 | GCATCTGCTTTTTGTTAAAAACGGG | 60.558 | 40.000 | 0.00 | 0.00 | 35.57 | 5.28 |
1981 | 4007 | 5.006165 | TGGCATCTGCTTTTTGTTAAAAACG | 59.994 | 36.000 | 1.70 | 0.00 | 41.70 | 3.60 |
1988 | 4014 | 2.224329 | TGCATGGCATCTGCTTTTTGTT | 60.224 | 40.909 | 13.68 | 0.00 | 40.34 | 2.83 |
1989 | 4015 | 1.345089 | TGCATGGCATCTGCTTTTTGT | 59.655 | 42.857 | 13.68 | 0.00 | 40.34 | 2.83 |
2028 | 4105 | 2.568623 | ACGGACAATTGCTCTCCTTT | 57.431 | 45.000 | 5.05 | 0.00 | 0.00 | 3.11 |
2040 | 4117 | 5.202765 | TGGTGATAACTAGGATACGGACAA | 58.797 | 41.667 | 0.00 | 0.00 | 46.39 | 3.18 |
2056 | 4133 | 9.474313 | AATAAAAAGAATAGTTGGCTGGTGATA | 57.526 | 29.630 | 0.00 | 0.00 | 0.00 | 2.15 |
2153 | 4348 | 7.237887 | AGAGAAGGGAAAAACCTGAGTACTTAT | 59.762 | 37.037 | 0.00 | 0.00 | 40.87 | 1.73 |
2154 | 4349 | 6.557633 | AGAGAAGGGAAAAACCTGAGTACTTA | 59.442 | 38.462 | 0.00 | 0.00 | 40.87 | 2.24 |
2254 | 4449 | 8.512138 | AGAATGGCAGTTATGTAGTACAAAAAC | 58.488 | 33.333 | 17.79 | 17.79 | 31.88 | 2.43 |
2367 | 4567 | 1.264020 | TGCATGAGTTTCGTTGCTCAC | 59.736 | 47.619 | 0.00 | 0.00 | 43.45 | 3.51 |
2439 | 4643 | 6.233434 | CAACCATATATGATGCACCTACAGT | 58.767 | 40.000 | 14.54 | 0.00 | 0.00 | 3.55 |
2516 | 4720 | 9.476202 | AAAAGTGAAAATACAATTACAGGCTTC | 57.524 | 29.630 | 0.00 | 0.00 | 0.00 | 3.86 |
2564 | 4768 | 3.178865 | TCCGTTTGGAGGGAAAGATAGT | 58.821 | 45.455 | 0.00 | 0.00 | 40.17 | 2.12 |
2565 | 4769 | 3.906720 | TCCGTTTGGAGGGAAAGATAG | 57.093 | 47.619 | 0.00 | 0.00 | 40.17 | 2.08 |
2596 | 4800 | 7.193377 | AGGAAATGAAAATTGAATGTTGTGC | 57.807 | 32.000 | 0.00 | 0.00 | 0.00 | 4.57 |
2636 | 4844 | 4.451096 | TGAGGAAATCAGTGTACGCTTTTC | 59.549 | 41.667 | 18.90 | 18.90 | 32.77 | 2.29 |
2641 | 4849 | 2.030946 | GCATGAGGAAATCAGTGTACGC | 59.969 | 50.000 | 0.00 | 0.00 | 42.53 | 4.42 |
2642 | 4850 | 3.062639 | GTGCATGAGGAAATCAGTGTACG | 59.937 | 47.826 | 0.00 | 0.00 | 42.53 | 3.67 |
2650 | 4858 | 4.110482 | GCTGAAATGTGCATGAGGAAATC | 58.890 | 43.478 | 0.00 | 0.00 | 0.00 | 2.17 |
2817 | 5026 | 7.264221 | ACATGATTAACAAAAACAGCTGTTGA | 58.736 | 30.769 | 31.73 | 6.89 | 38.44 | 3.18 |
2880 | 5090 | 2.408271 | TCAATGGAGTAAGCCTGCAG | 57.592 | 50.000 | 6.78 | 6.78 | 45.42 | 4.41 |
2944 | 5154 | 8.885722 | AGTTAAGTGTTTTATGTCGAACTGAAA | 58.114 | 29.630 | 0.00 | 0.00 | 0.00 | 2.69 |
2996 | 5206 | 5.980698 | AACTGAGTTCATGATATGCTTCG | 57.019 | 39.130 | 0.00 | 0.00 | 0.00 | 3.79 |
3000 | 5210 | 7.493743 | AGATCAAACTGAGTTCATGATATGC | 57.506 | 36.000 | 11.35 | 2.16 | 27.48 | 3.14 |
3156 | 5366 | 5.190677 | GGCTGGCTGGTAATAAGTAGAAAA | 58.809 | 41.667 | 0.00 | 0.00 | 0.00 | 2.29 |
3157 | 5367 | 4.226394 | TGGCTGGCTGGTAATAAGTAGAAA | 59.774 | 41.667 | 2.00 | 0.00 | 0.00 | 2.52 |
3158 | 5368 | 3.778075 | TGGCTGGCTGGTAATAAGTAGAA | 59.222 | 43.478 | 2.00 | 0.00 | 0.00 | 2.10 |
3293 | 5503 | 1.605710 | GAACCTGCATGATTGGGATCG | 59.394 | 52.381 | 0.00 | 0.00 | 34.91 | 3.69 |
3355 | 5565 | 0.181114 | TGCAGCTTATGAGGGCGAAT | 59.819 | 50.000 | 0.00 | 0.00 | 0.00 | 3.34 |
3692 | 5902 | 2.630098 | GCACCTAGATCTGCAGTATCCA | 59.370 | 50.000 | 14.67 | 4.11 | 33.31 | 3.41 |
4018 | 6228 | 8.090214 | ACAGATTGCATGTTTACAGCTTAAAAT | 58.910 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
4107 | 6317 | 3.581770 | GGGTTGAGTTTACAGGTCCTAGT | 59.418 | 47.826 | 0.00 | 0.00 | 0.00 | 2.57 |
4134 | 6344 | 7.161404 | ACATTAGTAAGAAACTCACAGATGCA | 58.839 | 34.615 | 0.00 | 0.00 | 39.80 | 3.96 |
4285 | 6495 | 4.327680 | ACCAAGTCTTATTCCTGACAAGC | 58.672 | 43.478 | 0.00 | 0.00 | 35.81 | 4.01 |
4346 | 6556 | 5.330295 | ACATTCTCGTAAGTACTTACAGCG | 58.670 | 41.667 | 33.89 | 24.53 | 44.12 | 5.18 |
4368 | 6579 | 5.977489 | AATGGCTTAAACCTAGGAACAAC | 57.023 | 39.130 | 17.98 | 0.00 | 0.00 | 3.32 |
4402 | 6615 | 5.991933 | TTGGCACATGTATGTAACCATTT | 57.008 | 34.783 | 15.55 | 0.00 | 42.33 | 2.32 |
4472 | 6700 | 2.726555 | CGATGAGCATTCGTGAAAGG | 57.273 | 50.000 | 0.00 | 0.00 | 0.00 | 3.11 |
4653 | 6882 | 6.583806 | GCTGTCAAAATAAGATCCAACACAAG | 59.416 | 38.462 | 0.00 | 0.00 | 0.00 | 3.16 |
4657 | 6886 | 5.048083 | GTGGCTGTCAAAATAAGATCCAACA | 60.048 | 40.000 | 0.00 | 0.00 | 0.00 | 3.33 |
4752 | 6982 | 2.846950 | ACTTACAGAATACCTGCCCCT | 58.153 | 47.619 | 0.00 | 0.00 | 46.81 | 4.79 |
4762 | 6992 | 9.998106 | TTAAGAAAGCAAGACTACTTACAGAAT | 57.002 | 29.630 | 0.00 | 0.00 | 34.70 | 2.40 |
5088 | 7319 | 4.614284 | CACGAGAATCTGCAATCACAAAAC | 59.386 | 41.667 | 0.00 | 0.00 | 0.00 | 2.43 |
5155 | 7387 | 6.252599 | TGATATATTTCCTGGAACTGCACT | 57.747 | 37.500 | 9.04 | 0.00 | 0.00 | 4.40 |
5257 | 7489 | 5.361857 | CGGAGGGAGTACTACCTATTTTTGA | 59.638 | 44.000 | 27.44 | 0.00 | 46.12 | 2.69 |
5357 | 7589 | 9.812347 | ACCATATGATAGAAATGCTAAATTCCA | 57.188 | 29.630 | 3.65 | 0.00 | 31.66 | 3.53 |
5579 | 7815 | 1.871789 | GCCACACAAACACACGCAC | 60.872 | 57.895 | 0.00 | 0.00 | 0.00 | 5.34 |
5588 | 7824 | 1.740905 | CATGCCAGTGCCACACAAA | 59.259 | 52.632 | 0.00 | 0.00 | 36.74 | 2.83 |
5609 | 7845 | 5.243426 | GACTCTTCAGTCTTCGCTCTTAT | 57.757 | 43.478 | 0.00 | 0.00 | 45.20 | 1.73 |
5639 | 7875 | 6.390721 | ACACTGCTACATCTACAAGTACAAG | 58.609 | 40.000 | 0.00 | 0.00 | 0.00 | 3.16 |
5674 | 7923 | 4.503910 | CCGACTGATTGATTTAGGTCACA | 58.496 | 43.478 | 0.00 | 0.00 | 0.00 | 3.58 |
5685 | 7934 | 0.810648 | GCAATTGGCCGACTGATTGA | 59.189 | 50.000 | 5.37 | 0.00 | 36.11 | 2.57 |
5691 | 7944 | 0.250901 | AAGACTGCAATTGGCCGACT | 60.251 | 50.000 | 7.72 | 0.00 | 43.89 | 4.18 |
5692 | 7945 | 0.109597 | CAAGACTGCAATTGGCCGAC | 60.110 | 55.000 | 7.72 | 0.00 | 43.89 | 4.79 |
5699 | 7952 | 1.203994 | GAGCATGCCAAGACTGCAATT | 59.796 | 47.619 | 15.66 | 0.00 | 42.92 | 2.32 |
5713 | 7983 | 2.168106 | ACTAGGAGAGCAACAGAGCATG | 59.832 | 50.000 | 0.00 | 0.00 | 36.85 | 4.06 |
5714 | 7984 | 2.465813 | ACTAGGAGAGCAACAGAGCAT | 58.534 | 47.619 | 0.00 | 0.00 | 36.85 | 3.79 |
5720 | 7990 | 3.838244 | ACAACAACTAGGAGAGCAACA | 57.162 | 42.857 | 0.00 | 0.00 | 0.00 | 3.33 |
5736 | 8006 | 5.039333 | CAGTACGTACCATAGGCTAACAAC | 58.961 | 45.833 | 21.80 | 0.00 | 0.00 | 3.32 |
5737 | 8007 | 4.706476 | ACAGTACGTACCATAGGCTAACAA | 59.294 | 41.667 | 21.80 | 0.00 | 0.00 | 2.83 |
5739 | 8009 | 4.907879 | ACAGTACGTACCATAGGCTAAC | 57.092 | 45.455 | 21.80 | 0.00 | 0.00 | 2.34 |
5740 | 8010 | 5.684704 | ACTACAGTACGTACCATAGGCTAA | 58.315 | 41.667 | 25.90 | 5.58 | 0.00 | 3.09 |
5741 | 8011 | 5.296151 | ACTACAGTACGTACCATAGGCTA | 57.704 | 43.478 | 25.90 | 0.00 | 0.00 | 3.93 |
5742 | 8012 | 4.162040 | ACTACAGTACGTACCATAGGCT | 57.838 | 45.455 | 25.90 | 12.07 | 0.00 | 4.58 |
5743 | 8013 | 5.049129 | CCTTACTACAGTACGTACCATAGGC | 60.049 | 48.000 | 25.90 | 4.42 | 0.00 | 3.93 |
5744 | 8014 | 6.291377 | TCCTTACTACAGTACGTACCATAGG | 58.709 | 44.000 | 25.90 | 19.94 | 0.00 | 2.57 |
5745 | 8015 | 6.426328 | CCTCCTTACTACAGTACGTACCATAG | 59.574 | 46.154 | 21.80 | 22.49 | 0.00 | 2.23 |
5747 | 8017 | 5.104360 | TCCTCCTTACTACAGTACGTACCAT | 60.104 | 44.000 | 21.80 | 12.74 | 0.00 | 3.55 |
5750 | 8020 | 6.934048 | ATTCCTCCTTACTACAGTACGTAC | 57.066 | 41.667 | 18.10 | 18.10 | 0.00 | 3.67 |
5751 | 8021 | 8.023021 | TCTATTCCTCCTTACTACAGTACGTA | 57.977 | 38.462 | 0.00 | 0.00 | 0.00 | 3.57 |
5752 | 8022 | 6.893583 | TCTATTCCTCCTTACTACAGTACGT | 58.106 | 40.000 | 0.00 | 0.00 | 0.00 | 3.57 |
5753 | 8023 | 6.427547 | CCTCTATTCCTCCTTACTACAGTACG | 59.572 | 46.154 | 0.00 | 0.00 | 0.00 | 3.67 |
5754 | 8024 | 7.289310 | ACCTCTATTCCTCCTTACTACAGTAC | 58.711 | 42.308 | 0.00 | 0.00 | 0.00 | 2.73 |
5755 | 8025 | 7.463054 | ACCTCTATTCCTCCTTACTACAGTA | 57.537 | 40.000 | 0.00 | 0.00 | 0.00 | 2.74 |
5757 | 8027 | 7.231115 | GGTTACCTCTATTCCTCCTTACTACAG | 59.769 | 44.444 | 0.00 | 0.00 | 0.00 | 2.74 |
5865 | 8151 | 3.206150 | TGAACTGTTTTCCAGAGCAGAC | 58.794 | 45.455 | 0.00 | 0.00 | 44.49 | 3.51 |
5866 | 8152 | 3.470709 | CTGAACTGTTTTCCAGAGCAGA | 58.529 | 45.455 | 0.00 | 0.00 | 44.49 | 4.26 |
5867 | 8153 | 2.551459 | CCTGAACTGTTTTCCAGAGCAG | 59.449 | 50.000 | 8.74 | 2.89 | 44.49 | 4.24 |
5868 | 8154 | 2.575532 | CCTGAACTGTTTTCCAGAGCA | 58.424 | 47.619 | 8.74 | 0.00 | 44.49 | 4.26 |
5869 | 8155 | 1.268079 | GCCTGAACTGTTTTCCAGAGC | 59.732 | 52.381 | 8.74 | 7.13 | 44.49 | 4.09 |
5912 | 8208 | 2.510238 | GACCCGCTACTGCTGCTG | 60.510 | 66.667 | 4.89 | 4.89 | 36.97 | 4.41 |
5913 | 8209 | 4.135153 | CGACCCGCTACTGCTGCT | 62.135 | 66.667 | 0.00 | 0.00 | 36.97 | 4.24 |
5999 | 8307 | 0.834612 | ACTGACCACAACCCGAAGAA | 59.165 | 50.000 | 0.00 | 0.00 | 0.00 | 2.52 |
6015 | 8323 | 6.713903 | AGAGATGCATAATTATTCCCACACTG | 59.286 | 38.462 | 0.00 | 0.00 | 0.00 | 3.66 |
6157 | 8465 | 1.210234 | CTACATCACCCCTGCATCACA | 59.790 | 52.381 | 0.00 | 0.00 | 0.00 | 3.58 |
6376 | 8684 | 2.017782 | TCGCCAGCGCCATATTAAAAA | 58.982 | 42.857 | 2.29 | 0.00 | 39.59 | 1.94 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.