Multiple sequence alignment - TraesCS5A01G140000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G140000 chr5A 100.000 6540 0 0 1 6540 312247451 312240912 0.000000e+00 12078.0
1 TraesCS5A01G140000 chr5A 98.467 522 8 0 6019 6540 312234984 312234463 0.000000e+00 920.0
2 TraesCS5A01G140000 chr5A 84.437 302 34 10 5480 5781 614167160 614166872 1.070000e-72 285.0
3 TraesCS5A01G140000 chr5A 96.875 32 0 1 3623 3653 312265302 312265271 1.200000e-02 52.8
4 TraesCS5A01G140000 chr5A 83.051 59 8 2 1625 1682 573652186 573652129 1.200000e-02 52.8
5 TraesCS5A01G140000 chr5D 94.195 3962 127 56 2102 6013 242019984 242016076 0.000000e+00 5947.0
6 TraesCS5A01G140000 chr5D 89.918 1587 99 38 20 1568 242022043 242020480 0.000000e+00 1988.0
7 TraesCS5A01G140000 chr5D 95.575 113 5 0 1993 2105 242020209 242020097 1.450000e-41 182.0
8 TraesCS5A01G140000 chr5D 95.556 45 0 2 1780 1823 4029077 4029034 3.270000e-08 71.3
9 TraesCS5A01G140000 chr5D 94.872 39 1 1 1780 1818 230374155 230374118 7.080000e-05 60.2
10 TraesCS5A01G140000 chr5B 95.618 1643 59 6 2102 3733 257013942 257012302 0.000000e+00 2623.0
11 TraesCS5A01G140000 chr5B 93.443 976 39 10 3746 4701 257012317 257011347 0.000000e+00 1424.0
12 TraesCS5A01G140000 chr5B 90.018 551 36 6 4689 5237 257005320 257004787 0.000000e+00 695.0
13 TraesCS5A01G140000 chr5B 81.994 672 45 35 5416 6018 257004783 257004119 9.790000e-138 501.0
14 TraesCS5A01G140000 chr5B 80.867 669 37 32 539 1168 257017249 257016633 6.020000e-120 442.0
15 TraesCS5A01G140000 chr5B 88.485 165 11 6 319 477 257017398 257017236 6.690000e-45 193.0
16 TraesCS5A01G140000 chr5B 82.775 209 11 13 1818 2026 257014263 257014080 5.250000e-36 163.0
17 TraesCS5A01G140000 chr5B 92.157 102 5 3 1528 1627 257014377 257014277 2.460000e-29 141.0
18 TraesCS5A01G140000 chr5B 84.375 128 14 3 53 174 257017595 257017468 3.200000e-23 121.0
19 TraesCS5A01G140000 chr5B 87.000 100 10 1 193 289 257017499 257017400 6.930000e-20 110.0
20 TraesCS5A01G140000 chr5B 98.276 58 1 0 2048 2105 257014082 257014025 1.160000e-17 102.0
21 TraesCS5A01G140000 chr5B 91.045 67 4 2 5263 5327 711742601 711742667 9.030000e-14 89.8
22 TraesCS5A01G140000 chr7A 98.851 522 5 1 6019 6540 445608972 445608452 0.000000e+00 929.0
23 TraesCS5A01G140000 chr7A 98.662 523 6 1 6019 6540 445623902 445623380 0.000000e+00 926.0
24 TraesCS5A01G140000 chr7A 100.000 32 0 0 1625 1656 547353384 547353415 7.080000e-05 60.2
25 TraesCS5A01G140000 chr6B 98.476 525 5 1 6016 6540 704559119 704559640 0.000000e+00 922.0
26 TraesCS5A01G140000 chr6B 98.276 522 5 2 6019 6540 704552722 704553239 0.000000e+00 911.0
27 TraesCS5A01G140000 chr3A 98.289 526 8 1 6015 6540 22675087 22675611 0.000000e+00 920.0
28 TraesCS5A01G140000 chr3B 98.467 522 6 1 6019 6540 13911639 13911120 0.000000e+00 918.0
29 TraesCS5A01G140000 chr3B 98.276 522 6 1 6019 6540 13918040 13917522 0.000000e+00 911.0
30 TraesCS5A01G140000 chr3B 94.872 39 1 1 1780 1818 735968157 735968120 7.080000e-05 60.2
31 TraesCS5A01G140000 chr6A 98.084 522 10 0 6019 6540 604611476 604610955 0.000000e+00 909.0
32 TraesCS5A01G140000 chr6A 85.906 298 28 10 5484 5781 304899372 304899089 8.240000e-79 305.0
33 TraesCS5A01G140000 chr6A 87.387 111 8 3 1624 1733 25766315 25766420 8.910000e-24 122.0
34 TraesCS5A01G140000 chr6A 95.000 60 1 2 5259 5317 538047987 538048045 6.980000e-15 93.5
35 TraesCS5A01G140000 chr3D 87.708 301 24 9 5481 5781 482119904 482120191 8.120000e-89 339.0
36 TraesCS5A01G140000 chr3D 89.855 69 5 2 5272 5338 423260079 423260147 3.250000e-13 87.9
37 TraesCS5A01G140000 chr3D 97.222 36 1 0 1791 1826 359340426 359340391 1.970000e-05 62.1
38 TraesCS5A01G140000 chr3D 84.483 58 7 2 1626 1682 15154355 15154411 1.000000e-03 56.5
39 TraesCS5A01G140000 chr7B 85.382 301 31 10 5481 5781 404521839 404522126 3.830000e-77 300.0
40 TraesCS5A01G140000 chr7B 98.077 52 1 0 2761 2812 626589604 626589553 2.510000e-14 91.6
41 TraesCS5A01G140000 chr1A 85.382 301 31 9 5481 5781 562698762 562699049 3.830000e-77 300.0
42 TraesCS5A01G140000 chr4B 85.235 298 31 9 5484 5781 359898849 359898565 1.780000e-75 294.0
43 TraesCS5A01G140000 chr2A 85.050 301 32 9 5481 5781 305598948 305599235 1.780000e-75 294.0
44 TraesCS5A01G140000 chr2A 89.041 73 2 3 5245 5317 65084795 65084861 1.170000e-12 86.1
45 TraesCS5A01G140000 chr2A 81.818 99 12 6 5222 5317 199081967 199082062 1.960000e-10 78.7
46 TraesCS5A01G140000 chr2D 87.421 159 10 7 5623 5781 638013032 638013180 2.420000e-39 174.0
47 TraesCS5A01G140000 chr2D 92.308 65 3 2 5271 5334 631487226 631487289 2.510000e-14 91.6
48 TraesCS5A01G140000 chr4A 90.000 100 10 0 1051 1150 466643944 466643845 5.320000e-26 130.0
49 TraesCS5A01G140000 chr4A 87.805 82 7 3 1747 1826 593201923 593201843 6.980000e-15 93.5
50 TraesCS5A01G140000 chr4A 87.838 74 7 2 5269 5341 710779509 710779437 1.170000e-12 86.1
51 TraesCS5A01G140000 chr7D 85.965 114 10 3 1624 1737 82851628 82851521 4.140000e-22 117.0
52 TraesCS5A01G140000 chr7D 94.872 39 1 1 1780 1818 197874068 197874031 7.080000e-05 60.2
53 TraesCS5A01G140000 chr2B 87.838 74 8 1 1745 1818 245996300 245996228 1.170000e-12 86.1
54 TraesCS5A01G140000 chr1B 89.706 68 6 1 5261 5327 151463494 151463427 1.170000e-12 86.1
55 TraesCS5A01G140000 chr1B 97.222 36 1 0 1626 1661 429704494 429704529 1.970000e-05 62.1
56 TraesCS5A01G140000 chr1B 97.059 34 1 0 1628 1661 677028289 677028322 2.550000e-04 58.4
57 TraesCS5A01G140000 chr1D 85.714 63 4 5 1780 1840 176804113 176804054 1.970000e-05 62.1
58 TraesCS5A01G140000 chr1D 100.000 31 0 0 1623 1653 323868929 323868959 2.550000e-04 58.4
59 TraesCS5A01G140000 chr6D 94.737 38 2 0 1788 1825 90438150 90438187 7.080000e-05 60.2
60 TraesCS5A01G140000 chr6D 97.059 34 1 0 1622 1655 392529661 392529628 2.550000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G140000 chr5A 312240912 312247451 6539 True 12078.000000 12078 100.000000 1 6540 1 chr5A.!!$R2 6539
1 TraesCS5A01G140000 chr5A 312234463 312234984 521 True 920.000000 920 98.467000 6019 6540 1 chr5A.!!$R1 521
2 TraesCS5A01G140000 chr5D 242016076 242022043 5967 True 2705.666667 5947 93.229333 20 6013 3 chr5D.!!$R3 5993
3 TraesCS5A01G140000 chr5B 257004119 257005320 1201 True 598.000000 695 86.006000 4689 6018 2 chr5B.!!$R1 1329
4 TraesCS5A01G140000 chr5B 257011347 257017595 6248 True 591.000000 2623 89.221778 53 4701 9 chr5B.!!$R2 4648
5 TraesCS5A01G140000 chr7A 445608452 445608972 520 True 929.000000 929 98.851000 6019 6540 1 chr7A.!!$R1 521
6 TraesCS5A01G140000 chr7A 445623380 445623902 522 True 926.000000 926 98.662000 6019 6540 1 chr7A.!!$R2 521
7 TraesCS5A01G140000 chr6B 704559119 704559640 521 False 922.000000 922 98.476000 6016 6540 1 chr6B.!!$F2 524
8 TraesCS5A01G140000 chr6B 704552722 704553239 517 False 911.000000 911 98.276000 6019 6540 1 chr6B.!!$F1 521
9 TraesCS5A01G140000 chr3A 22675087 22675611 524 False 920.000000 920 98.289000 6015 6540 1 chr3A.!!$F1 525
10 TraesCS5A01G140000 chr3B 13911120 13911639 519 True 918.000000 918 98.467000 6019 6540 1 chr3B.!!$R1 521
11 TraesCS5A01G140000 chr3B 13917522 13918040 518 True 911.000000 911 98.276000 6019 6540 1 chr3B.!!$R2 521
12 TraesCS5A01G140000 chr6A 604610955 604611476 521 True 909.000000 909 98.084000 6019 6540 1 chr6A.!!$R2 521


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
523 542 0.250684 TCGGCCTTTGCATCAGAACA 60.251 50.0 0.00 0.0 40.13 3.18 F
1481 3340 0.395862 TCCGTCCCTCTGTCTCCATC 60.396 60.0 0.00 0.0 0.00 3.51 F
1811 3811 0.036765 ACACGTGTGGGCGTTATCAT 60.037 50.0 22.71 0.0 43.83 2.45 F
3293 5503 0.246086 TTGCCCATTTTCATGTCCGC 59.754 50.0 0.00 0.0 0.00 5.54 F
3597 5807 1.024579 ATTGGCCGTTGATGTCGTCC 61.025 55.0 0.00 0.0 0.00 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1630 3630 0.713883 CACGTGTGACAGTTATCGGC 59.286 55.000 7.58 0.00 0.00 5.54 R
3355 5565 0.181114 TGCAGCTTATGAGGGCGAAT 59.819 50.000 0.00 0.00 0.00 3.34 R
3692 5902 2.630098 GCACCTAGATCTGCAGTATCCA 59.370 50.000 14.67 4.11 33.31 3.41 R
4472 6700 2.726555 CGATGAGCATTCGTGAAAGG 57.273 50.000 0.00 0.00 0.00 3.11 R
5588 7824 1.740905 CATGCCAGTGCCACACAAA 59.259 52.632 0.00 0.00 36.74 2.83 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 6.930667 AAAAATACGTGTCAGTAACCACTT 57.069 33.333 0.00 0.00 30.46 3.16
48 49 3.439129 GTCAGTAACCACTTATGTTGGGC 59.561 47.826 0.00 0.00 30.46 5.36
71 72 5.277538 GCGACAAAAGGATATCCAAGATGAC 60.278 44.000 23.81 14.44 38.89 3.06
128 129 3.169733 GTGATGGACGAGTAGACGTTTC 58.830 50.000 0.00 0.00 46.52 2.78
171 178 2.939103 GGGAAAGAAGATGTGATGGACG 59.061 50.000 0.00 0.00 0.00 4.79
183 190 1.274167 TGATGGACGAGTAGGCGTTTT 59.726 47.619 0.00 0.00 45.72 2.43
213 220 5.124617 TGTTTTTGTGGGGAAAAGAAAATGC 59.875 36.000 0.00 0.00 0.00 3.56
455 473 8.106247 ACCAAGCTCGTATCTTATTTTTCAAA 57.894 30.769 0.00 0.00 0.00 2.69
456 474 8.573035 ACCAAGCTCGTATCTTATTTTTCAAAA 58.427 29.630 0.00 0.00 0.00 2.44
477 495 1.209990 CCCAGAAATCTCAGCTCTGCT 59.790 52.381 0.00 0.00 40.77 4.24
481 499 4.217983 CCAGAAATCTCAGCTCTGCTTTTT 59.782 41.667 0.00 0.00 36.40 1.94
512 531 1.632589 AAAAATCAGCCTCGGCCTTT 58.367 45.000 0.00 0.00 43.17 3.11
523 542 0.250684 TCGGCCTTTGCATCAGAACA 60.251 50.000 0.00 0.00 40.13 3.18
532 551 1.197055 GCATCAGAACAATGCATGCG 58.803 50.000 14.09 0.76 46.93 4.73
535 554 1.812235 TCAGAACAATGCATGCGACT 58.188 45.000 14.09 2.96 0.00 4.18
540 559 3.691118 AGAACAATGCATGCGACTGTAAT 59.309 39.130 14.09 5.61 0.00 1.89
542 561 3.273434 ACAATGCATGCGACTGTAATCT 58.727 40.909 14.09 0.00 0.00 2.40
591 610 7.932491 TCTCTATATATACCAGTACCATCGCTC 59.068 40.741 0.00 0.00 0.00 5.03
593 612 1.977056 ATACCAGTACCATCGCTCGA 58.023 50.000 0.00 0.00 0.00 4.04
641 669 5.628193 CCATATAGCTTCAGTTACCGTAACG 59.372 44.000 14.35 10.21 43.29 3.18
676 704 3.327757 TGTAAGCTGGATTTGTCTGGACT 59.672 43.478 0.00 0.00 0.00 3.85
677 705 2.486472 AGCTGGATTTGTCTGGACTG 57.514 50.000 2.38 0.00 0.00 3.51
678 706 1.980765 AGCTGGATTTGTCTGGACTGA 59.019 47.619 2.38 0.00 0.00 3.41
679 707 2.373169 AGCTGGATTTGTCTGGACTGAA 59.627 45.455 2.38 0.00 0.00 3.02
680 708 2.746362 GCTGGATTTGTCTGGACTGAAG 59.254 50.000 2.38 0.00 0.00 3.02
828 868 2.866762 ACACGACAAGCTTCTTCAACTC 59.133 45.455 0.00 0.00 0.00 3.01
871 913 1.139947 CGCTCGTCCTTCCTCTTCC 59.860 63.158 0.00 0.00 0.00 3.46
992 1069 4.039357 CGTCGTGGTCGTCTGGCT 62.039 66.667 0.00 0.00 38.33 4.75
1015 1092 4.593864 GGATGGGAGAGTCGCCGC 62.594 72.222 6.84 0.89 0.00 6.53
1021 1098 4.373116 GAGAGTCGCCGCCACCAA 62.373 66.667 0.00 0.00 0.00 3.67
1173 1250 8.870116 ACCTTTGCATCATGTCAGTATATACTA 58.130 33.333 15.03 0.68 34.13 1.82
1185 1380 8.373981 TGTCAGTATATACTACTCCCTGTCTAC 58.626 40.741 15.03 0.00 34.13 2.59
1194 1389 3.521727 ACTCCCTGTCTACAACCAAGAT 58.478 45.455 0.00 0.00 0.00 2.40
1225 1420 1.686587 CTGGTACTGGCATGGTCGATA 59.313 52.381 0.00 0.00 0.00 2.92
1227 1422 2.299013 TGGTACTGGCATGGTCGATATC 59.701 50.000 0.00 0.00 0.00 1.63
1228 1423 2.563179 GGTACTGGCATGGTCGATATCT 59.437 50.000 0.34 0.00 0.00 1.98
1229 1424 3.006967 GGTACTGGCATGGTCGATATCTT 59.993 47.826 0.34 0.00 0.00 2.40
1230 1425 3.117491 ACTGGCATGGTCGATATCTTG 57.883 47.619 0.34 0.00 0.00 3.02
1305 1503 6.941436 TCCCTTCTCTCGGTCTTATCTTATAC 59.059 42.308 0.00 0.00 0.00 1.47
1321 3173 0.454600 ATACCCACTGCACGTACTCG 59.545 55.000 0.00 0.00 43.34 4.18
1399 3258 7.825761 TGGTATCATTCTTGGAGCACATATATG 59.174 37.037 11.29 11.29 0.00 1.78
1453 3312 3.274288 GTTCCCAACATGACTGATCCTC 58.726 50.000 0.00 0.00 0.00 3.71
1458 3317 3.196463 CAACATGACTGATCCTCTCTGC 58.804 50.000 0.00 0.00 0.00 4.26
1460 3319 2.040939 CATGACTGATCCTCTCTGCCT 58.959 52.381 0.00 0.00 0.00 4.75
1465 3324 1.039785 TGATCCTCTCTGCCTGTCCG 61.040 60.000 0.00 0.00 0.00 4.79
1468 3327 2.716017 CCTCTCTGCCTGTCCGTCC 61.716 68.421 0.00 0.00 0.00 4.79
1469 3328 2.680352 TCTCTGCCTGTCCGTCCC 60.680 66.667 0.00 0.00 0.00 4.46
1470 3329 2.681778 CTCTGCCTGTCCGTCCCT 60.682 66.667 0.00 0.00 0.00 4.20
1471 3330 2.680352 TCTGCCTGTCCGTCCCTC 60.680 66.667 0.00 0.00 0.00 4.30
1472 3331 2.681778 CTGCCTGTCCGTCCCTCT 60.682 66.667 0.00 0.00 0.00 3.69
1473 3332 2.997315 TGCCTGTCCGTCCCTCTG 60.997 66.667 0.00 0.00 0.00 3.35
1474 3333 2.997897 GCCTGTCCGTCCCTCTGT 60.998 66.667 0.00 0.00 0.00 3.41
1475 3334 3.007973 GCCTGTCCGTCCCTCTGTC 62.008 68.421 0.00 0.00 0.00 3.51
1476 3335 1.304547 CCTGTCCGTCCCTCTGTCT 60.305 63.158 0.00 0.00 0.00 3.41
1477 3336 1.316706 CCTGTCCGTCCCTCTGTCTC 61.317 65.000 0.00 0.00 0.00 3.36
1479 3338 1.304217 GTCCGTCCCTCTGTCTCCA 60.304 63.158 0.00 0.00 0.00 3.86
1480 3339 0.684805 GTCCGTCCCTCTGTCTCCAT 60.685 60.000 0.00 0.00 0.00 3.41
1481 3340 0.395862 TCCGTCCCTCTGTCTCCATC 60.396 60.000 0.00 0.00 0.00 3.51
1579 3578 4.540359 TGCCATTTTCCCTTTCTTCATG 57.460 40.909 0.00 0.00 0.00 3.07
1580 3579 3.903090 TGCCATTTTCCCTTTCTTCATGT 59.097 39.130 0.00 0.00 0.00 3.21
1581 3580 5.083122 TGCCATTTTCCCTTTCTTCATGTA 58.917 37.500 0.00 0.00 0.00 2.29
1582 3581 5.185635 TGCCATTTTCCCTTTCTTCATGTAG 59.814 40.000 0.00 0.00 0.00 2.74
1607 3607 5.640189 AGCTGGATTTCACTCTTCATTTG 57.360 39.130 0.00 0.00 0.00 2.32
1609 3609 4.741342 CTGGATTTCACTCTTCATTTGGC 58.259 43.478 0.00 0.00 0.00 4.52
1610 3610 4.151121 TGGATTTCACTCTTCATTTGGCA 58.849 39.130 0.00 0.00 0.00 4.92
1613 3613 5.337009 GGATTTCACTCTTCATTTGGCATGT 60.337 40.000 0.00 0.00 0.00 3.21
1627 3627 4.052159 TGGCATGTGTGTTTGTTTTAGG 57.948 40.909 0.00 0.00 0.00 2.69
1628 3628 3.701542 TGGCATGTGTGTTTGTTTTAGGA 59.298 39.130 0.00 0.00 0.00 2.94
1629 3629 4.048504 GGCATGTGTGTTTGTTTTAGGAC 58.951 43.478 0.00 0.00 0.00 3.85
1630 3630 3.728718 GCATGTGTGTTTGTTTTAGGACG 59.271 43.478 0.00 0.00 0.00 4.79
1631 3631 3.408288 TGTGTGTTTGTTTTAGGACGC 57.592 42.857 0.00 0.00 0.00 5.19
1632 3632 2.097791 TGTGTGTTTGTTTTAGGACGCC 59.902 45.455 0.00 0.00 0.00 5.68
1633 3633 1.331138 TGTGTTTGTTTTAGGACGCCG 59.669 47.619 0.00 0.00 0.00 6.46
1634 3634 1.598601 GTGTTTGTTTTAGGACGCCGA 59.401 47.619 0.00 0.00 0.00 5.54
1637 3637 4.063689 TGTTTGTTTTAGGACGCCGATAA 58.936 39.130 0.00 0.00 0.00 1.75
1638 3638 4.083908 TGTTTGTTTTAGGACGCCGATAAC 60.084 41.667 0.00 5.79 0.00 1.89
1639 3639 3.598019 TGTTTTAGGACGCCGATAACT 57.402 42.857 0.00 0.00 0.00 2.24
1640 3640 3.255725 TGTTTTAGGACGCCGATAACTG 58.744 45.455 0.00 0.00 0.00 3.16
1641 3641 3.256558 GTTTTAGGACGCCGATAACTGT 58.743 45.455 0.00 0.00 0.00 3.55
1642 3642 2.857592 TTAGGACGCCGATAACTGTC 57.142 50.000 0.00 0.00 0.00 3.51
1643 3643 1.753930 TAGGACGCCGATAACTGTCA 58.246 50.000 0.00 0.00 33.04 3.58
1644 3644 0.172803 AGGACGCCGATAACTGTCAC 59.827 55.000 0.00 0.00 33.04 3.67
1645 3645 0.108992 GGACGCCGATAACTGTCACA 60.109 55.000 0.00 0.00 33.04 3.58
1646 3646 0.989890 GACGCCGATAACTGTCACAC 59.010 55.000 0.00 0.00 0.00 3.82
1647 3647 0.731514 ACGCCGATAACTGTCACACG 60.732 55.000 0.00 0.00 0.00 4.49
1648 3648 0.731514 CGCCGATAACTGTCACACGT 60.732 55.000 0.00 0.00 0.00 4.49
1649 3649 0.713883 GCCGATAACTGTCACACGTG 59.286 55.000 15.48 15.48 0.00 4.49
1650 3650 1.933500 GCCGATAACTGTCACACGTGT 60.934 52.381 17.22 17.22 0.00 4.49
1651 3651 1.719246 CCGATAACTGTCACACGTGTG 59.281 52.381 37.04 37.04 46.91 3.82
1652 3652 1.719246 CGATAACTGTCACACGTGTGG 59.281 52.381 39.88 28.84 45.65 4.17
1659 3659 3.209266 TCACACGTGTGGCATGTAG 57.791 52.632 39.88 18.65 45.65 2.74
1660 3660 0.391228 TCACACGTGTGGCATGTAGT 59.609 50.000 39.88 5.48 45.65 2.73
1661 3661 1.614413 TCACACGTGTGGCATGTAGTA 59.386 47.619 39.88 20.41 45.65 1.82
1662 3662 2.036089 TCACACGTGTGGCATGTAGTAA 59.964 45.455 39.88 19.72 45.65 2.24
1663 3663 2.156891 CACACGTGTGGCATGTAGTAAC 59.843 50.000 35.65 0.00 42.10 2.50
1664 3664 2.224090 ACACGTGTGGCATGTAGTAACA 60.224 45.455 22.71 0.00 35.86 2.41
1665 3665 3.556213 ACACGTGTGGCATGTAGTAACAT 60.556 43.478 22.71 0.00 39.94 2.71
1666 3666 3.062099 CACGTGTGGCATGTAGTAACATC 59.938 47.826 7.58 0.00 44.70 3.06
1667 3667 3.258228 CGTGTGGCATGTAGTAACATCA 58.742 45.455 0.00 0.00 44.70 3.07
1668 3668 3.062099 CGTGTGGCATGTAGTAACATCAC 59.938 47.826 0.00 4.32 44.70 3.06
1669 3669 3.374058 GTGTGGCATGTAGTAACATCACC 59.626 47.826 0.00 4.76 44.70 4.02
1670 3670 2.943033 GTGGCATGTAGTAACATCACCC 59.057 50.000 0.00 0.80 44.70 4.61
1671 3671 2.573915 TGGCATGTAGTAACATCACCCA 59.426 45.455 0.00 2.82 44.70 4.51
1672 3672 2.943033 GGCATGTAGTAACATCACCCAC 59.057 50.000 0.00 0.00 44.70 4.61
1673 3673 3.605634 GCATGTAGTAACATCACCCACA 58.394 45.455 0.00 0.00 44.70 4.17
1674 3674 3.374058 GCATGTAGTAACATCACCCACAC 59.626 47.826 0.00 0.00 44.70 3.82
1675 3675 3.306917 TGTAGTAACATCACCCACACG 57.693 47.619 0.00 0.00 0.00 4.49
1676 3676 2.629137 TGTAGTAACATCACCCACACGT 59.371 45.455 0.00 0.00 0.00 4.49
1677 3677 2.922740 AGTAACATCACCCACACGTT 57.077 45.000 0.00 0.00 0.00 3.99
1678 3678 3.202829 AGTAACATCACCCACACGTTT 57.797 42.857 0.00 0.00 0.00 3.60
1679 3679 3.547746 AGTAACATCACCCACACGTTTT 58.452 40.909 0.00 0.00 0.00 2.43
1680 3680 2.861462 AACATCACCCACACGTTTTG 57.139 45.000 0.00 0.00 0.00 2.44
1681 3681 1.757682 ACATCACCCACACGTTTTGT 58.242 45.000 0.00 0.00 39.97 2.83
1682 3682 2.096248 ACATCACCCACACGTTTTGTT 58.904 42.857 0.00 0.00 35.67 2.83
1683 3683 2.494073 ACATCACCCACACGTTTTGTTT 59.506 40.909 0.00 0.00 35.67 2.83
1684 3684 3.056465 ACATCACCCACACGTTTTGTTTT 60.056 39.130 0.00 0.00 35.67 2.43
1685 3685 3.662247 TCACCCACACGTTTTGTTTTT 57.338 38.095 0.00 0.00 35.67 1.94
1686 3686 4.778534 TCACCCACACGTTTTGTTTTTA 57.221 36.364 0.00 0.00 35.67 1.52
1687 3687 4.483311 TCACCCACACGTTTTGTTTTTAC 58.517 39.130 0.00 0.00 35.67 2.01
1688 3688 4.022589 TCACCCACACGTTTTGTTTTTACA 60.023 37.500 0.00 0.00 35.67 2.41
1689 3689 4.865365 CACCCACACGTTTTGTTTTTACAT 59.135 37.500 0.00 0.00 35.67 2.29
1690 3690 5.348997 CACCCACACGTTTTGTTTTTACATT 59.651 36.000 0.00 0.00 35.67 2.71
1691 3691 6.530534 CACCCACACGTTTTGTTTTTACATTA 59.469 34.615 0.00 0.00 35.67 1.90
1692 3692 7.063074 CACCCACACGTTTTGTTTTTACATTAA 59.937 33.333 0.00 0.00 35.67 1.40
1693 3693 7.601508 ACCCACACGTTTTGTTTTTACATTAAA 59.398 29.630 0.00 0.00 35.67 1.52
1694 3694 8.111224 CCCACACGTTTTGTTTTTACATTAAAG 58.889 33.333 0.00 0.00 35.67 1.85
1695 3695 8.648968 CCACACGTTTTGTTTTTACATTAAAGT 58.351 29.630 0.00 0.00 35.67 2.66
1739 3739 3.825143 AAAACTGAAACTTGCCATGCT 57.175 38.095 0.00 0.00 0.00 3.79
1740 3740 3.825143 AAACTGAAACTTGCCATGCTT 57.175 38.095 0.00 0.00 0.00 3.91
1741 3741 3.375782 AACTGAAACTTGCCATGCTTC 57.624 42.857 0.00 0.00 0.00 3.86
1742 3742 2.309613 ACTGAAACTTGCCATGCTTCA 58.690 42.857 0.00 0.00 0.00 3.02
1743 3743 2.035066 ACTGAAACTTGCCATGCTTCAC 59.965 45.455 0.00 0.00 0.00 3.18
1744 3744 2.030371 TGAAACTTGCCATGCTTCACA 58.970 42.857 0.00 0.00 0.00 3.58
1745 3745 2.429971 TGAAACTTGCCATGCTTCACAA 59.570 40.909 0.00 0.00 0.00 3.33
1746 3746 2.514205 AACTTGCCATGCTTCACAAC 57.486 45.000 0.00 0.00 0.00 3.32
1747 3747 1.696063 ACTTGCCATGCTTCACAACT 58.304 45.000 0.00 0.00 0.00 3.16
1748 3748 2.862541 ACTTGCCATGCTTCACAACTA 58.137 42.857 0.00 0.00 0.00 2.24
1749 3749 3.221771 ACTTGCCATGCTTCACAACTAA 58.778 40.909 0.00 0.00 0.00 2.24
1750 3750 3.636300 ACTTGCCATGCTTCACAACTAAA 59.364 39.130 0.00 0.00 0.00 1.85
1751 3751 4.281688 ACTTGCCATGCTTCACAACTAAAT 59.718 37.500 0.00 0.00 0.00 1.40
1752 3752 4.870123 TGCCATGCTTCACAACTAAATT 57.130 36.364 0.00 0.00 0.00 1.82
1753 3753 5.212532 TGCCATGCTTCACAACTAAATTT 57.787 34.783 0.00 0.00 0.00 1.82
1754 3754 4.989797 TGCCATGCTTCACAACTAAATTTG 59.010 37.500 0.00 0.00 0.00 2.32
1755 3755 4.143052 GCCATGCTTCACAACTAAATTTGC 60.143 41.667 0.00 0.00 0.00 3.68
1756 3756 5.232463 CCATGCTTCACAACTAAATTTGCT 58.768 37.500 0.00 0.00 0.00 3.91
1757 3757 6.389091 CCATGCTTCACAACTAAATTTGCTA 58.611 36.000 0.00 0.00 0.00 3.49
1758 3758 6.867816 CCATGCTTCACAACTAAATTTGCTAA 59.132 34.615 0.00 0.00 0.00 3.09
1759 3759 7.148755 CCATGCTTCACAACTAAATTTGCTAAC 60.149 37.037 0.00 0.00 0.00 2.34
1760 3760 6.800543 TGCTTCACAACTAAATTTGCTAACA 58.199 32.000 0.00 0.00 0.00 2.41
1761 3761 7.261325 TGCTTCACAACTAAATTTGCTAACAA 58.739 30.769 0.00 0.00 0.00 2.83
1783 3783 4.942761 AAAACATGTGGACAGAATTGCT 57.057 36.364 0.00 0.00 0.00 3.91
1784 3784 4.942761 AAACATGTGGACAGAATTGCTT 57.057 36.364 0.00 0.00 0.00 3.91
1785 3785 4.942761 AACATGTGGACAGAATTGCTTT 57.057 36.364 0.00 0.00 0.00 3.51
1786 3786 4.510038 ACATGTGGACAGAATTGCTTTC 57.490 40.909 0.00 0.00 34.31 2.62
1787 3787 3.058016 ACATGTGGACAGAATTGCTTTCG 60.058 43.478 0.00 0.00 39.46 3.46
1788 3788 2.571212 TGTGGACAGAATTGCTTTCGT 58.429 42.857 0.00 0.00 39.46 3.85
1789 3789 3.734463 TGTGGACAGAATTGCTTTCGTA 58.266 40.909 0.00 0.00 39.46 3.43
1790 3790 3.496884 TGTGGACAGAATTGCTTTCGTAC 59.503 43.478 0.00 0.00 39.46 3.67
1791 3791 3.071479 TGGACAGAATTGCTTTCGTACC 58.929 45.455 0.00 0.00 39.46 3.34
1792 3792 3.071479 GGACAGAATTGCTTTCGTACCA 58.929 45.455 0.00 0.00 39.46 3.25
1793 3793 3.120304 GGACAGAATTGCTTTCGTACCAC 60.120 47.826 0.00 0.00 39.46 4.16
1794 3794 3.472652 ACAGAATTGCTTTCGTACCACA 58.527 40.909 0.00 0.00 39.46 4.17
1795 3795 3.250040 ACAGAATTGCTTTCGTACCACAC 59.750 43.478 0.00 0.00 39.46 3.82
1808 3808 3.960237 CACACGTGTGGGCGTTAT 58.040 55.556 35.65 1.93 43.83 1.89
1809 3809 1.785321 CACACGTGTGGGCGTTATC 59.215 57.895 35.65 0.00 43.83 1.75
1810 3810 0.946700 CACACGTGTGGGCGTTATCA 60.947 55.000 35.65 0.00 43.83 2.15
1811 3811 0.036765 ACACGTGTGGGCGTTATCAT 60.037 50.000 22.71 0.00 43.83 2.45
1812 3812 1.083489 CACGTGTGGGCGTTATCATT 58.917 50.000 7.58 0.00 43.83 2.57
1813 3813 1.466950 CACGTGTGGGCGTTATCATTT 59.533 47.619 7.58 0.00 43.83 2.32
1814 3814 1.466950 ACGTGTGGGCGTTATCATTTG 59.533 47.619 0.00 0.00 43.04 2.32
1815 3815 1.202132 CGTGTGGGCGTTATCATTTGG 60.202 52.381 0.00 0.00 0.00 3.28
1816 3816 1.134175 GTGTGGGCGTTATCATTTGGG 59.866 52.381 0.00 0.00 0.00 4.12
1858 3858 6.749036 ATAGTCCACCTCACCCTAATAAAG 57.251 41.667 0.00 0.00 0.00 1.85
1863 3863 7.184022 AGTCCACCTCACCCTAATAAAGTAAAT 59.816 37.037 0.00 0.00 0.00 1.40
1864 3864 8.488668 GTCCACCTCACCCTAATAAAGTAAATA 58.511 37.037 0.00 0.00 0.00 1.40
1866 3866 9.689501 CCACCTCACCCTAATAAAGTAAATAAA 57.310 33.333 0.00 0.00 0.00 1.40
1903 3903 0.532573 TCTCGAACTGCCCAGACATC 59.467 55.000 1.69 0.00 0.00 3.06
1904 3904 0.534412 CTCGAACTGCCCAGACATCT 59.466 55.000 1.69 0.00 0.00 2.90
1922 3922 1.135199 TCTGTTCGGTTGGTCGATAGC 60.135 52.381 0.00 0.00 39.03 2.97
1924 3924 2.093890 TGTTCGGTTGGTCGATAGCTA 58.906 47.619 0.00 0.00 39.03 3.32
1926 3926 3.114065 GTTCGGTTGGTCGATAGCTAAG 58.886 50.000 0.00 0.00 39.03 2.18
1927 3927 2.646930 TCGGTTGGTCGATAGCTAAGA 58.353 47.619 0.00 0.00 33.92 2.10
1928 3928 2.357009 TCGGTTGGTCGATAGCTAAGAC 59.643 50.000 18.86 18.86 33.92 3.01
1929 3929 2.098607 CGGTTGGTCGATAGCTAAGACA 59.901 50.000 24.69 13.75 36.68 3.41
1930 3930 3.445857 GGTTGGTCGATAGCTAAGACAC 58.554 50.000 24.69 17.91 36.68 3.67
1931 3931 3.119245 GGTTGGTCGATAGCTAAGACACA 60.119 47.826 24.69 19.09 36.68 3.72
1934 3934 3.951680 TGGTCGATAGCTAAGACACATCA 59.048 43.478 24.69 15.23 36.68 3.07
1935 3935 4.584743 TGGTCGATAGCTAAGACACATCAT 59.415 41.667 24.69 0.00 36.68 2.45
1936 3936 4.920340 GGTCGATAGCTAAGACACATCATG 59.080 45.833 24.69 0.00 36.68 3.07
1938 3938 6.294010 GGTCGATAGCTAAGACACATCATGTA 60.294 42.308 24.69 0.00 43.56 2.29
1939 3939 7.309177 GTCGATAGCTAAGACACATCATGTAT 58.691 38.462 20.95 0.00 43.56 2.29
1979 4005 6.366061 CCTTTTTGCCAGTAAGCTATTTTCAC 59.634 38.462 0.00 0.00 0.00 3.18
1981 4007 3.352648 TGCCAGTAAGCTATTTTCACCC 58.647 45.455 0.00 0.00 0.00 4.61
1988 4014 7.308710 CCAGTAAGCTATTTTCACCCGTTTTTA 60.309 37.037 0.00 0.00 0.00 1.52
1989 4015 8.077386 CAGTAAGCTATTTTCACCCGTTTTTAA 58.923 33.333 0.00 0.00 0.00 1.52
2028 4105 7.604549 CCATGCAAAATTCAGTGGCATATATA 58.395 34.615 0.00 0.00 42.81 0.86
2040 4117 6.883217 CAGTGGCATATATAAAGGAGAGCAAT 59.117 38.462 0.00 0.00 0.00 3.56
2056 4133 4.406003 AGAGCAATTGTCCGTATCCTAGTT 59.594 41.667 7.40 0.00 0.00 2.24
2254 4449 6.586344 TCTATGCTGGATTTCTTGGTAAGAG 58.414 40.000 0.00 0.00 39.03 2.85
2305 4502 2.477375 CCAACAAAGTTGATGCACATGC 59.523 45.455 11.19 0.00 42.50 4.06
2329 4526 6.102663 CCTTTGTTTCACAAATGTACCAACA 58.897 36.000 2.62 0.00 45.79 3.33
2516 4720 3.032609 GCAGATCGCATCGGACGG 61.033 66.667 4.93 0.00 41.79 4.79
2564 4768 8.604640 TTTTCACGGTGTAAGTATTTGTGATA 57.395 30.769 8.17 0.00 35.12 2.15
2565 4769 7.585286 TTCACGGTGTAAGTATTTGTGATAC 57.415 36.000 8.17 0.00 35.12 2.24
2596 4800 5.417580 TCCCTCCAAACGGATGAAAATTTAG 59.582 40.000 0.00 0.00 30.13 1.85
2606 4810 6.586082 ACGGATGAAAATTTAGCACAACATTC 59.414 34.615 0.00 0.00 0.00 2.67
2636 4844 8.839310 TTCATTTCCTTGTCTTTTAGAGAGAG 57.161 34.615 0.00 0.00 34.31 3.20
2641 4849 8.894768 TTCCTTGTCTTTTAGAGAGAGAAAAG 57.105 34.615 0.00 0.00 41.83 2.27
2642 4850 6.931840 TCCTTGTCTTTTAGAGAGAGAAAAGC 59.068 38.462 2.88 0.48 40.77 3.51
2650 4858 4.167554 AGAGAGAGAAAAGCGTACACTG 57.832 45.455 0.00 0.00 0.00 3.66
2817 5026 1.637553 AGGGACAGTTGCAGGAATGAT 59.362 47.619 0.00 0.00 0.00 2.45
2880 5090 2.047002 ATGTTATGGTTACACGGGGC 57.953 50.000 0.00 0.00 0.00 5.80
2944 5154 6.736110 AGCTTTGGGCATATCAATTGTAAT 57.264 33.333 5.13 0.00 44.79 1.89
2996 5206 7.394816 ACCTATGCATAGTCCATAATAACACC 58.605 38.462 27.75 0.00 0.00 4.16
3000 5210 5.989168 TGCATAGTCCATAATAACACCGAAG 59.011 40.000 0.00 0.00 0.00 3.79
3293 5503 0.246086 TTGCCCATTTTCATGTCCGC 59.754 50.000 0.00 0.00 0.00 5.54
3355 5565 6.089283 GTCTTTGCATATCAATTTTCGCAACA 59.911 34.615 0.00 0.00 38.94 3.33
3597 5807 1.024579 ATTGGCCGTTGATGTCGTCC 61.025 55.000 0.00 0.00 0.00 4.79
4107 6317 7.851387 TGTTTATCGTTGGCTCAATAATACA 57.149 32.000 0.00 0.00 0.00 2.29
4134 6344 2.159382 CCTGTAAACTCAACCCGCATT 58.841 47.619 0.00 0.00 0.00 3.56
4148 6358 1.200716 CCGCATTGCATCTGTGAGTTT 59.799 47.619 9.69 0.00 0.00 2.66
4149 6359 2.512885 CGCATTGCATCTGTGAGTTTC 58.487 47.619 9.69 0.00 0.00 2.78
4150 6360 2.161012 CGCATTGCATCTGTGAGTTTCT 59.839 45.455 9.69 0.00 0.00 2.52
4151 6361 3.365666 CGCATTGCATCTGTGAGTTTCTT 60.366 43.478 9.69 0.00 0.00 2.52
4285 6495 3.248602 GCTGCTTATCCCTTTATGACACG 59.751 47.826 0.00 0.00 0.00 4.49
4346 6556 4.263911 GCAGCAATGATTAAAAGCGTTCTC 59.736 41.667 0.00 0.00 0.00 2.87
4368 6579 5.566623 TCGCTGTAAGTACTTACGAGAATG 58.433 41.667 30.86 21.99 46.19 2.67
4402 6615 6.946009 AGGTTTAAGCCATTTTACTTCTAGCA 59.054 34.615 11.28 0.00 0.00 3.49
4424 6637 5.718146 CAAATGGTTACATACATGTGCCAA 58.282 37.500 9.11 0.00 44.27 4.52
4457 6684 9.664332 ATCATAGATAAGAATTAGTGCATGTCC 57.336 33.333 0.00 0.00 31.76 4.02
4472 6700 8.483307 AGTGCATGTCCAATTCAAATATTTTC 57.517 30.769 0.00 0.00 0.00 2.29
4549 6777 6.145535 CACTTCTCTTCTACAAAACAATGCC 58.854 40.000 0.00 0.00 0.00 4.40
4615 6843 5.924475 GAGATCTTTCTCACGGAAAACAA 57.076 39.130 0.00 0.00 46.49 2.83
4762 6992 2.688666 CTCCAGCAGGGGCAGGTA 60.689 66.667 0.00 0.00 46.14 3.08
5357 7589 4.993705 TTTCCATAGAACTGAACCAGGT 57.006 40.909 0.00 0.00 35.51 4.00
5588 7824 2.568696 CTATAGAGCAGTGCGTGTGT 57.431 50.000 10.00 0.00 0.00 3.72
5609 7845 1.675310 GTGTGGCACTGGCATGCTA 60.675 57.895 18.92 11.28 45.38 3.49
5616 7852 1.534595 GCACTGGCATGCTATAAGAGC 59.465 52.381 18.92 15.35 45.68 4.09
5674 7923 1.676006 GTAGCAGTGTTGTTGGCACTT 59.324 47.619 0.00 0.00 43.87 3.16
5685 7934 3.561143 TGTTGGCACTTGTGACCTAAAT 58.439 40.909 3.97 0.00 0.00 1.40
5691 7944 4.458989 GGCACTTGTGACCTAAATCAATCA 59.541 41.667 4.79 0.00 0.00 2.57
5692 7945 5.392380 GGCACTTGTGACCTAAATCAATCAG 60.392 44.000 4.79 0.00 0.00 2.90
5697 7950 3.309954 GTGACCTAAATCAATCAGTCGGC 59.690 47.826 0.00 0.00 0.00 5.54
5699 7952 2.238646 ACCTAAATCAATCAGTCGGCCA 59.761 45.455 2.24 0.00 0.00 5.36
5720 7990 0.251033 TTGCAGTCTTGGCATGCTCT 60.251 50.000 18.92 5.92 41.58 4.09
5736 8006 2.028658 TGCTCTGTTGCTCTCCTAGTTG 60.029 50.000 0.00 0.00 0.00 3.16
5737 8007 2.028567 GCTCTGTTGCTCTCCTAGTTGT 60.029 50.000 0.00 0.00 0.00 3.32
5739 8009 3.993081 CTCTGTTGCTCTCCTAGTTGTTG 59.007 47.826 0.00 0.00 0.00 3.33
5740 8010 3.388024 TCTGTTGCTCTCCTAGTTGTTGT 59.612 43.478 0.00 0.00 0.00 3.32
5741 8011 4.130118 CTGTTGCTCTCCTAGTTGTTGTT 58.870 43.478 0.00 0.00 0.00 2.83
5742 8012 5.069914 TCTGTTGCTCTCCTAGTTGTTGTTA 59.930 40.000 0.00 0.00 0.00 2.41
5743 8013 5.297547 TGTTGCTCTCCTAGTTGTTGTTAG 58.702 41.667 0.00 0.00 0.00 2.34
5744 8014 3.926616 TGCTCTCCTAGTTGTTGTTAGC 58.073 45.455 0.00 0.00 0.00 3.09
5745 8015 3.263261 GCTCTCCTAGTTGTTGTTAGCC 58.737 50.000 0.00 0.00 0.00 3.93
5747 8017 4.159879 GCTCTCCTAGTTGTTGTTAGCCTA 59.840 45.833 0.00 0.00 0.00 3.93
5750 8020 5.128827 TCTCCTAGTTGTTGTTAGCCTATGG 59.871 44.000 0.00 0.00 0.00 2.74
5751 8021 4.781087 TCCTAGTTGTTGTTAGCCTATGGT 59.219 41.667 0.00 0.00 0.00 3.55
5752 8022 5.959594 TCCTAGTTGTTGTTAGCCTATGGTA 59.040 40.000 0.00 0.00 0.00 3.25
5753 8023 6.047231 CCTAGTTGTTGTTAGCCTATGGTAC 58.953 44.000 0.00 0.00 0.00 3.34
5754 8024 4.501071 AGTTGTTGTTAGCCTATGGTACG 58.499 43.478 0.00 0.00 0.00 3.67
5755 8025 4.020839 AGTTGTTGTTAGCCTATGGTACGT 60.021 41.667 0.00 0.00 0.00 3.57
5757 8027 4.997565 TGTTGTTAGCCTATGGTACGTAC 58.002 43.478 17.56 17.56 0.00 3.67
5844 8125 2.282180 TTTGCCCTGCTTCGGGTC 60.282 61.111 7.89 2.34 46.47 4.46
5845 8126 4.697756 TTGCCCTGCTTCGGGTCG 62.698 66.667 7.89 0.00 46.47 4.79
5849 8130 4.148825 CCTGCTTCGGGTCGGAGG 62.149 72.222 0.00 0.00 32.35 4.30
5850 8131 3.068691 CTGCTTCGGGTCGGAGGA 61.069 66.667 0.00 0.00 32.35 3.71
5852 8133 2.754658 GCTTCGGGTCGGAGGAGA 60.755 66.667 0.00 0.00 32.35 3.71
5912 8208 1.731720 GGGTGCTGAGATTGACTGAC 58.268 55.000 0.00 0.00 0.00 3.51
5913 8209 1.002430 GGGTGCTGAGATTGACTGACA 59.998 52.381 0.00 0.00 0.00 3.58
5914 8210 2.344950 GGTGCTGAGATTGACTGACAG 58.655 52.381 0.00 0.00 0.00 3.51
5924 8220 0.037882 TGACTGACAGCAGCAGTAGC 60.038 55.000 1.25 0.00 45.94 3.58
5999 8307 1.228003 TGGTGAAACGCGGATTGGT 60.228 52.632 12.47 0.00 38.12 3.67
6015 8323 0.179040 TGGTTCTTCGGGTTGTGGTC 60.179 55.000 0.00 0.00 0.00 4.02
6376 8684 0.178975 CCAGCTCTCTCCCGTATCCT 60.179 60.000 0.00 0.00 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 6.930667 AAGTGGTTACTGACACGTATTTTT 57.069 33.333 0.00 0.00 42.25 1.94
17 18 7.658575 ACATAAGTGGTTACTGACACGTATTTT 59.341 33.333 0.00 0.00 39.22 1.82
18 19 7.156673 ACATAAGTGGTTACTGACACGTATTT 58.843 34.615 0.00 0.00 39.22 1.40
22 23 4.595762 ACATAAGTGGTTACTGACACGT 57.404 40.909 0.00 0.00 42.25 4.49
27 28 3.681593 GCCCAACATAAGTGGTTACTGA 58.318 45.455 0.00 0.00 37.19 3.41
39 40 2.570415 TCCTTTTGTCGCCCAACATA 57.430 45.000 0.00 0.00 31.20 2.29
48 49 5.237344 GGTCATCTTGGATATCCTTTTGTCG 59.763 44.000 22.35 5.72 36.82 4.35
71 72 0.109723 TTTTCCCTGGTCGGAAGTGG 59.890 55.000 0.00 0.00 42.81 4.00
128 129 5.007921 CCCCTGCACAAAGAAAAGAAAAATG 59.992 40.000 0.00 0.00 0.00 2.32
144 151 1.815003 CACATCTTCTTTCCCCTGCAC 59.185 52.381 0.00 0.00 0.00 4.57
171 178 8.597227 ACAAAAACAAAAATAAAACGCCTACTC 58.403 29.630 0.00 0.00 0.00 2.59
183 190 8.863872 TTCTTTTCCCCACAAAAACAAAAATA 57.136 26.923 0.00 0.00 0.00 1.40
213 220 2.829043 TTCACCAATCTCGTCCGCCG 62.829 60.000 0.00 0.00 38.13 6.46
314 324 2.016318 CTGATGCATTCCACGGCTTAA 58.984 47.619 0.00 0.00 0.00 1.85
321 331 4.142622 TGAAATCGAACTGATGCATTCCAC 60.143 41.667 0.00 0.00 37.39 4.02
357 367 8.832735 GGGATTTAAGGTGGATGGAGTATATAA 58.167 37.037 0.00 0.00 0.00 0.98
415 433 3.056465 AGCTTGGTCGTCTCTCCTTTAAG 60.056 47.826 0.00 0.00 0.00 1.85
455 473 2.617532 GCAGAGCTGAGATTTCTGGGTT 60.618 50.000 0.85 0.00 38.94 4.11
456 474 1.065564 GCAGAGCTGAGATTTCTGGGT 60.066 52.381 0.85 0.00 38.94 4.51
499 518 2.753043 ATGCAAAGGCCGAGGCTG 60.753 61.111 14.33 5.80 38.81 4.85
504 523 0.250684 TGTTCTGATGCAAAGGCCGA 60.251 50.000 0.00 0.00 40.13 5.54
523 542 3.534554 TGAGATTACAGTCGCATGCATT 58.465 40.909 19.57 0.00 0.00 3.56
530 549 2.222908 GCAAAGCTGAGATTACAGTCGC 60.223 50.000 0.00 0.00 39.73 5.19
532 551 3.126000 GGTGCAAAGCTGAGATTACAGTC 59.874 47.826 0.00 0.00 39.73 3.51
535 554 3.076621 CAGGTGCAAAGCTGAGATTACA 58.923 45.455 0.00 0.00 0.00 2.41
540 559 1.601759 GCCAGGTGCAAAGCTGAGA 60.602 57.895 6.50 0.00 40.77 3.27
591 610 3.190118 AGGTGAAGAAGGTACGTAGTTCG 59.810 47.826 0.00 0.00 37.78 3.95
593 612 5.295152 CAAAGGTGAAGAAGGTACGTAGTT 58.705 41.667 0.00 0.00 37.78 2.24
641 669 3.427243 CAGCTTACAGCAGTACTACGTC 58.573 50.000 0.00 0.00 45.56 4.34
647 675 4.003648 ACAAATCCAGCTTACAGCAGTAC 58.996 43.478 0.00 0.00 45.56 2.73
648 676 4.020218 AGACAAATCCAGCTTACAGCAGTA 60.020 41.667 0.00 0.00 45.56 2.74
649 677 3.077359 GACAAATCCAGCTTACAGCAGT 58.923 45.455 0.00 0.00 45.56 4.40
650 678 3.126514 CAGACAAATCCAGCTTACAGCAG 59.873 47.826 0.00 0.00 45.56 4.24
651 679 3.076621 CAGACAAATCCAGCTTACAGCA 58.923 45.455 0.00 0.00 45.56 4.41
676 704 0.904649 ACCAGATCACCATCGCTTCA 59.095 50.000 0.00 0.00 33.75 3.02
677 705 1.293924 CACCAGATCACCATCGCTTC 58.706 55.000 0.00 0.00 33.75 3.86
678 706 0.745845 GCACCAGATCACCATCGCTT 60.746 55.000 0.00 0.00 33.75 4.68
679 707 1.153289 GCACCAGATCACCATCGCT 60.153 57.895 0.00 0.00 33.75 4.93
680 708 2.528743 CGCACCAGATCACCATCGC 61.529 63.158 0.00 0.00 33.75 4.58
891 933 2.040606 CCGGGGAAGGAAGGAGGA 59.959 66.667 0.00 0.00 0.00 3.71
892 934 3.798511 GCCGGGGAAGGAAGGAGG 61.799 72.222 2.18 0.00 0.00 4.30
893 935 2.689034 AGCCGGGGAAGGAAGGAG 60.689 66.667 2.18 0.00 0.00 3.69
992 1069 1.769026 CGACTCTCCCATCCTTCTCA 58.231 55.000 0.00 0.00 0.00 3.27
1173 1250 2.972348 TCTTGGTTGTAGACAGGGAGT 58.028 47.619 0.00 0.00 0.00 3.85
1194 1389 6.545666 CCATGCCAGTACCAGTAATTTAATCA 59.454 38.462 0.00 0.00 0.00 2.57
1225 1420 3.501445 GCAAGACAAGACAAGAGCAAGAT 59.499 43.478 0.00 0.00 0.00 2.40
1227 1422 2.877168 AGCAAGACAAGACAAGAGCAAG 59.123 45.455 0.00 0.00 0.00 4.01
1228 1423 2.874701 GAGCAAGACAAGACAAGAGCAA 59.125 45.455 0.00 0.00 0.00 3.91
1229 1424 2.487934 GAGCAAGACAAGACAAGAGCA 58.512 47.619 0.00 0.00 0.00 4.26
1230 1425 1.803555 GGAGCAAGACAAGACAAGAGC 59.196 52.381 0.00 0.00 0.00 4.09
1329 3181 7.301054 GCAGAACGCAGAAGCATTATTATTAT 58.699 34.615 0.00 0.00 42.27 1.28
1431 3290 3.933061 GAGGATCAGTCATGTTGGGAACC 60.933 52.174 0.00 0.00 43.44 3.62
1432 3291 3.054802 AGAGGATCAGTCATGTTGGGAAC 60.055 47.826 0.00 0.00 37.82 3.62
1443 3302 1.408702 GACAGGCAGAGAGGATCAGTC 59.591 57.143 0.00 0.00 37.82 3.51
1453 3312 2.681778 AGGGACGGACAGGCAGAG 60.682 66.667 0.00 0.00 0.00 3.35
1458 3317 1.304547 AGACAGAGGGACGGACAGG 60.305 63.158 0.00 0.00 0.00 4.00
1460 3319 1.304217 GGAGACAGAGGGACGGACA 60.304 63.158 0.00 0.00 0.00 4.02
1473 3332 4.268359 AGCTGAAAAAGATGGATGGAGAC 58.732 43.478 0.00 0.00 0.00 3.36
1474 3333 4.581309 AGCTGAAAAAGATGGATGGAGA 57.419 40.909 0.00 0.00 0.00 3.71
1475 3334 5.408356 CAAAGCTGAAAAAGATGGATGGAG 58.592 41.667 0.00 0.00 0.00 3.86
1476 3335 4.322198 GCAAAGCTGAAAAAGATGGATGGA 60.322 41.667 0.00 0.00 0.00 3.41
1477 3336 3.930848 GCAAAGCTGAAAAAGATGGATGG 59.069 43.478 0.00 0.00 0.00 3.51
1479 3338 3.367703 CGGCAAAGCTGAAAAAGATGGAT 60.368 43.478 0.00 0.00 37.02 3.41
1480 3339 2.030007 CGGCAAAGCTGAAAAAGATGGA 60.030 45.455 0.00 0.00 37.02 3.41
1481 3340 2.030007 TCGGCAAAGCTGAAAAAGATGG 60.030 45.455 0.00 0.00 41.31 3.51
1579 3578 4.664150 AGAGTGAAATCCAGCTAGCTAC 57.336 45.455 18.86 10.25 0.00 3.58
1580 3579 4.711846 TGAAGAGTGAAATCCAGCTAGCTA 59.288 41.667 18.86 2.62 0.00 3.32
1581 3580 3.517100 TGAAGAGTGAAATCCAGCTAGCT 59.483 43.478 12.68 12.68 0.00 3.32
1582 3581 3.866651 TGAAGAGTGAAATCCAGCTAGC 58.133 45.455 6.62 6.62 0.00 3.42
1607 3607 4.048504 GTCCTAAAACAAACACACATGCC 58.951 43.478 0.00 0.00 0.00 4.40
1609 3609 3.728718 GCGTCCTAAAACAAACACACATG 59.271 43.478 0.00 0.00 0.00 3.21
1610 3610 3.243267 GGCGTCCTAAAACAAACACACAT 60.243 43.478 0.00 0.00 0.00 3.21
1613 3613 1.331138 CGGCGTCCTAAAACAAACACA 59.669 47.619 0.00 0.00 0.00 3.72
1627 3627 0.989890 GTGTGACAGTTATCGGCGTC 59.010 55.000 6.85 0.00 0.00 5.19
1628 3628 0.731514 CGTGTGACAGTTATCGGCGT 60.732 55.000 6.85 0.00 0.00 5.68
1629 3629 0.731514 ACGTGTGACAGTTATCGGCG 60.732 55.000 0.00 0.00 0.00 6.46
1630 3630 0.713883 CACGTGTGACAGTTATCGGC 59.286 55.000 7.58 0.00 0.00 5.54
1631 3631 2.060326 ACACGTGTGACAGTTATCGG 57.940 50.000 22.71 0.00 0.00 4.18
1637 3637 3.776680 ACATGCCACACGTGTGACAGT 62.777 52.381 42.33 31.63 46.95 3.55
1638 3638 1.159713 ACATGCCACACGTGTGACAG 61.160 55.000 42.33 31.08 46.95 3.51
1639 3639 1.153269 ACATGCCACACGTGTGACA 60.153 52.632 42.33 38.43 46.95 3.58
1640 3640 3.731136 ACATGCCACACGTGTGAC 58.269 55.556 42.33 34.44 46.95 3.67
1644 3644 2.409012 TGTTACTACATGCCACACGTG 58.591 47.619 15.48 15.48 41.41 4.49
1645 3645 2.823924 TGTTACTACATGCCACACGT 57.176 45.000 0.00 0.00 0.00 4.49
1646 3646 3.062099 GTGATGTTACTACATGCCACACG 59.938 47.826 0.00 0.00 44.90 4.49
1647 3647 3.374058 GGTGATGTTACTACATGCCACAC 59.626 47.826 10.38 0.00 44.90 3.82
1648 3648 3.605634 GGTGATGTTACTACATGCCACA 58.394 45.455 10.38 0.00 44.90 4.17
1649 3649 2.943033 GGGTGATGTTACTACATGCCAC 59.057 50.000 0.00 0.00 44.90 5.01
1650 3650 2.573915 TGGGTGATGTTACTACATGCCA 59.426 45.455 0.00 0.00 44.90 4.92
1651 3651 2.943033 GTGGGTGATGTTACTACATGCC 59.057 50.000 0.00 0.00 44.90 4.40
1652 3652 3.374058 GTGTGGGTGATGTTACTACATGC 59.626 47.826 0.00 0.00 44.90 4.06
1653 3653 3.616821 CGTGTGGGTGATGTTACTACATG 59.383 47.826 0.00 0.00 44.90 3.21
1655 3655 2.629137 ACGTGTGGGTGATGTTACTACA 59.371 45.455 0.00 0.00 38.95 2.74
1656 3656 3.308438 ACGTGTGGGTGATGTTACTAC 57.692 47.619 0.00 0.00 0.00 2.73
1657 3657 4.339872 AAACGTGTGGGTGATGTTACTA 57.660 40.909 0.00 0.00 0.00 1.82
1658 3658 2.922740 AACGTGTGGGTGATGTTACT 57.077 45.000 0.00 0.00 0.00 2.24
1659 3659 3.065648 ACAAAACGTGTGGGTGATGTTAC 59.934 43.478 0.00 0.00 39.72 2.50
1660 3660 3.280295 ACAAAACGTGTGGGTGATGTTA 58.720 40.909 0.00 0.00 39.72 2.41
1661 3661 2.096248 ACAAAACGTGTGGGTGATGTT 58.904 42.857 0.00 0.00 39.72 2.71
1662 3662 1.757682 ACAAAACGTGTGGGTGATGT 58.242 45.000 0.00 0.00 39.72 3.06
1663 3663 2.861462 AACAAAACGTGTGGGTGATG 57.139 45.000 0.00 0.00 40.60 3.07
1664 3664 3.878160 AAAACAAAACGTGTGGGTGAT 57.122 38.095 0.00 0.00 40.60 3.06
1665 3665 3.662247 AAAAACAAAACGTGTGGGTGA 57.338 38.095 0.00 0.00 40.60 4.02
1666 3666 4.235360 TGTAAAAACAAAACGTGTGGGTG 58.765 39.130 0.00 0.00 40.60 4.61
1667 3667 4.516365 TGTAAAAACAAAACGTGTGGGT 57.484 36.364 0.00 0.00 40.60 4.51
1668 3668 7.521509 TTAATGTAAAAACAAAACGTGTGGG 57.478 32.000 0.00 0.00 40.60 4.61
1669 3669 8.648968 ACTTTAATGTAAAAACAAAACGTGTGG 58.351 29.630 0.00 0.00 40.60 4.17
1718 3718 4.141233 AGCATGGCAAGTTTCAGTTTTT 57.859 36.364 0.00 0.00 0.00 1.94
1719 3719 3.825143 AGCATGGCAAGTTTCAGTTTT 57.175 38.095 0.00 0.00 0.00 2.43
1720 3720 3.132646 TGAAGCATGGCAAGTTTCAGTTT 59.867 39.130 16.28 0.00 32.43 2.66
1721 3721 2.694628 TGAAGCATGGCAAGTTTCAGTT 59.305 40.909 16.28 0.00 32.43 3.16
1722 3722 2.035066 GTGAAGCATGGCAAGTTTCAGT 59.965 45.455 19.80 0.00 36.98 3.41
1723 3723 2.034939 TGTGAAGCATGGCAAGTTTCAG 59.965 45.455 19.80 0.00 36.98 3.02
1724 3724 2.030371 TGTGAAGCATGGCAAGTTTCA 58.970 42.857 16.28 16.28 34.50 2.69
1725 3725 2.796593 GTTGTGAAGCATGGCAAGTTTC 59.203 45.455 11.63 11.63 0.00 2.78
1726 3726 2.431782 AGTTGTGAAGCATGGCAAGTTT 59.568 40.909 0.00 0.00 0.00 2.66
1727 3727 2.034124 AGTTGTGAAGCATGGCAAGTT 58.966 42.857 0.00 0.00 0.00 2.66
1728 3728 1.696063 AGTTGTGAAGCATGGCAAGT 58.304 45.000 0.00 0.00 0.00 3.16
1729 3729 3.921119 TTAGTTGTGAAGCATGGCAAG 57.079 42.857 0.00 0.00 0.00 4.01
1730 3730 4.870123 ATTTAGTTGTGAAGCATGGCAA 57.130 36.364 0.00 0.00 0.00 4.52
1731 3731 4.870123 AATTTAGTTGTGAAGCATGGCA 57.130 36.364 0.00 0.00 0.00 4.92
1732 3732 4.143052 GCAAATTTAGTTGTGAAGCATGGC 60.143 41.667 0.00 0.00 0.00 4.40
1733 3733 5.232463 AGCAAATTTAGTTGTGAAGCATGG 58.768 37.500 0.00 0.00 0.00 3.66
1734 3734 7.381948 TGTTAGCAAATTTAGTTGTGAAGCATG 59.618 33.333 0.00 0.00 0.00 4.06
1735 3735 7.432869 TGTTAGCAAATTTAGTTGTGAAGCAT 58.567 30.769 0.00 0.00 0.00 3.79
1736 3736 6.800543 TGTTAGCAAATTTAGTTGTGAAGCA 58.199 32.000 0.00 0.00 0.00 3.91
1737 3737 7.692908 TTGTTAGCAAATTTAGTTGTGAAGC 57.307 32.000 0.00 0.00 0.00 3.86
1761 3761 5.280654 AGCAATTCTGTCCACATGTTTTT 57.719 34.783 0.00 0.00 0.00 1.94
1762 3762 4.942761 AGCAATTCTGTCCACATGTTTT 57.057 36.364 0.00 0.00 0.00 2.43
1763 3763 4.942761 AAGCAATTCTGTCCACATGTTT 57.057 36.364 0.00 0.00 0.00 2.83
1764 3764 4.557296 CGAAAGCAATTCTGTCCACATGTT 60.557 41.667 0.00 0.00 35.79 2.71
1765 3765 3.058016 CGAAAGCAATTCTGTCCACATGT 60.058 43.478 0.00 0.00 35.79 3.21
1766 3766 3.058016 ACGAAAGCAATTCTGTCCACATG 60.058 43.478 0.00 0.00 35.79 3.21
1767 3767 3.149196 ACGAAAGCAATTCTGTCCACAT 58.851 40.909 0.00 0.00 35.79 3.21
1768 3768 2.571212 ACGAAAGCAATTCTGTCCACA 58.429 42.857 0.00 0.00 35.79 4.17
1769 3769 3.120304 GGTACGAAAGCAATTCTGTCCAC 60.120 47.826 0.00 0.00 35.79 4.02
1770 3770 3.071479 GGTACGAAAGCAATTCTGTCCA 58.929 45.455 0.00 0.00 35.79 4.02
1771 3771 3.071479 TGGTACGAAAGCAATTCTGTCC 58.929 45.455 0.00 0.00 35.79 4.02
1772 3772 3.496884 TGTGGTACGAAAGCAATTCTGTC 59.503 43.478 0.00 0.00 37.33 3.51
1773 3773 3.250040 GTGTGGTACGAAAGCAATTCTGT 59.750 43.478 0.00 0.00 37.33 3.41
1774 3774 3.810373 GTGTGGTACGAAAGCAATTCTG 58.190 45.455 0.00 0.00 37.33 3.02
1795 3795 1.202132 CCAAATGATAACGCCCACACG 60.202 52.381 0.00 0.00 39.50 4.49
1796 3796 1.134175 CCCAAATGATAACGCCCACAC 59.866 52.381 0.00 0.00 0.00 3.82
1797 3797 1.272203 ACCCAAATGATAACGCCCACA 60.272 47.619 0.00 0.00 0.00 4.17
1798 3798 1.470051 ACCCAAATGATAACGCCCAC 58.530 50.000 0.00 0.00 0.00 4.61
1799 3799 1.821753 CAACCCAAATGATAACGCCCA 59.178 47.619 0.00 0.00 0.00 5.36
1800 3800 1.822371 ACAACCCAAATGATAACGCCC 59.178 47.619 0.00 0.00 0.00 6.13
1801 3801 3.586100 AACAACCCAAATGATAACGCC 57.414 42.857 0.00 0.00 0.00 5.68
1802 3802 6.864165 TCTTAAAACAACCCAAATGATAACGC 59.136 34.615 0.00 0.00 0.00 4.84
1803 3803 8.079809 AGTCTTAAAACAACCCAAATGATAACG 58.920 33.333 0.00 0.00 0.00 3.18
1806 3806 9.575868 TGTAGTCTTAAAACAACCCAAATGATA 57.424 29.630 0.00 0.00 0.00 2.15
1807 3807 8.472007 TGTAGTCTTAAAACAACCCAAATGAT 57.528 30.769 0.00 0.00 0.00 2.45
1808 3808 7.883391 TGTAGTCTTAAAACAACCCAAATGA 57.117 32.000 0.00 0.00 0.00 2.57
1830 3830 4.008916 AGGGTGAGGTGGACTATTATGT 57.991 45.455 0.00 0.00 0.00 2.29
1871 3871 5.583854 GGCAGTTCGAGAATATCATGCATAT 59.416 40.000 0.00 0.00 34.17 1.78
1872 3872 4.931601 GGCAGTTCGAGAATATCATGCATA 59.068 41.667 0.00 0.00 34.17 3.14
1873 3873 3.750130 GGCAGTTCGAGAATATCATGCAT 59.250 43.478 0.00 0.00 34.17 3.96
1883 3883 0.976641 ATGTCTGGGCAGTTCGAGAA 59.023 50.000 0.00 0.00 0.00 2.87
1903 3903 1.135083 AGCTATCGACCAACCGAACAG 60.135 52.381 0.00 0.00 42.22 3.16
1904 3904 0.892755 AGCTATCGACCAACCGAACA 59.107 50.000 0.00 0.00 42.22 3.18
1922 3922 8.822652 TTGCATAGATACATGATGTGTCTTAG 57.177 34.615 26.03 19.61 44.75 2.18
1924 3924 8.510243 TTTTGCATAGATACATGATGTGTCTT 57.490 30.769 26.03 13.46 44.75 3.01
1926 3926 9.740239 AAATTTTGCATAGATACATGATGTGTC 57.260 29.630 13.58 13.58 42.29 3.67
1979 4005 5.558083 GCATCTGCTTTTTGTTAAAAACGGG 60.558 40.000 0.00 0.00 35.57 5.28
1981 4007 5.006165 TGGCATCTGCTTTTTGTTAAAAACG 59.994 36.000 1.70 0.00 41.70 3.60
1988 4014 2.224329 TGCATGGCATCTGCTTTTTGTT 60.224 40.909 13.68 0.00 40.34 2.83
1989 4015 1.345089 TGCATGGCATCTGCTTTTTGT 59.655 42.857 13.68 0.00 40.34 2.83
2028 4105 2.568623 ACGGACAATTGCTCTCCTTT 57.431 45.000 5.05 0.00 0.00 3.11
2040 4117 5.202765 TGGTGATAACTAGGATACGGACAA 58.797 41.667 0.00 0.00 46.39 3.18
2056 4133 9.474313 AATAAAAAGAATAGTTGGCTGGTGATA 57.526 29.630 0.00 0.00 0.00 2.15
2153 4348 7.237887 AGAGAAGGGAAAAACCTGAGTACTTAT 59.762 37.037 0.00 0.00 40.87 1.73
2154 4349 6.557633 AGAGAAGGGAAAAACCTGAGTACTTA 59.442 38.462 0.00 0.00 40.87 2.24
2254 4449 8.512138 AGAATGGCAGTTATGTAGTACAAAAAC 58.488 33.333 17.79 17.79 31.88 2.43
2367 4567 1.264020 TGCATGAGTTTCGTTGCTCAC 59.736 47.619 0.00 0.00 43.45 3.51
2439 4643 6.233434 CAACCATATATGATGCACCTACAGT 58.767 40.000 14.54 0.00 0.00 3.55
2516 4720 9.476202 AAAAGTGAAAATACAATTACAGGCTTC 57.524 29.630 0.00 0.00 0.00 3.86
2564 4768 3.178865 TCCGTTTGGAGGGAAAGATAGT 58.821 45.455 0.00 0.00 40.17 2.12
2565 4769 3.906720 TCCGTTTGGAGGGAAAGATAG 57.093 47.619 0.00 0.00 40.17 2.08
2596 4800 7.193377 AGGAAATGAAAATTGAATGTTGTGC 57.807 32.000 0.00 0.00 0.00 4.57
2636 4844 4.451096 TGAGGAAATCAGTGTACGCTTTTC 59.549 41.667 18.90 18.90 32.77 2.29
2641 4849 2.030946 GCATGAGGAAATCAGTGTACGC 59.969 50.000 0.00 0.00 42.53 4.42
2642 4850 3.062639 GTGCATGAGGAAATCAGTGTACG 59.937 47.826 0.00 0.00 42.53 3.67
2650 4858 4.110482 GCTGAAATGTGCATGAGGAAATC 58.890 43.478 0.00 0.00 0.00 2.17
2817 5026 7.264221 ACATGATTAACAAAAACAGCTGTTGA 58.736 30.769 31.73 6.89 38.44 3.18
2880 5090 2.408271 TCAATGGAGTAAGCCTGCAG 57.592 50.000 6.78 6.78 45.42 4.41
2944 5154 8.885722 AGTTAAGTGTTTTATGTCGAACTGAAA 58.114 29.630 0.00 0.00 0.00 2.69
2996 5206 5.980698 AACTGAGTTCATGATATGCTTCG 57.019 39.130 0.00 0.00 0.00 3.79
3000 5210 7.493743 AGATCAAACTGAGTTCATGATATGC 57.506 36.000 11.35 2.16 27.48 3.14
3156 5366 5.190677 GGCTGGCTGGTAATAAGTAGAAAA 58.809 41.667 0.00 0.00 0.00 2.29
3157 5367 4.226394 TGGCTGGCTGGTAATAAGTAGAAA 59.774 41.667 2.00 0.00 0.00 2.52
3158 5368 3.778075 TGGCTGGCTGGTAATAAGTAGAA 59.222 43.478 2.00 0.00 0.00 2.10
3293 5503 1.605710 GAACCTGCATGATTGGGATCG 59.394 52.381 0.00 0.00 34.91 3.69
3355 5565 0.181114 TGCAGCTTATGAGGGCGAAT 59.819 50.000 0.00 0.00 0.00 3.34
3692 5902 2.630098 GCACCTAGATCTGCAGTATCCA 59.370 50.000 14.67 4.11 33.31 3.41
4018 6228 8.090214 ACAGATTGCATGTTTACAGCTTAAAAT 58.910 29.630 0.00 0.00 0.00 1.82
4107 6317 3.581770 GGGTTGAGTTTACAGGTCCTAGT 59.418 47.826 0.00 0.00 0.00 2.57
4134 6344 7.161404 ACATTAGTAAGAAACTCACAGATGCA 58.839 34.615 0.00 0.00 39.80 3.96
4285 6495 4.327680 ACCAAGTCTTATTCCTGACAAGC 58.672 43.478 0.00 0.00 35.81 4.01
4346 6556 5.330295 ACATTCTCGTAAGTACTTACAGCG 58.670 41.667 33.89 24.53 44.12 5.18
4368 6579 5.977489 AATGGCTTAAACCTAGGAACAAC 57.023 39.130 17.98 0.00 0.00 3.32
4402 6615 5.991933 TTGGCACATGTATGTAACCATTT 57.008 34.783 15.55 0.00 42.33 2.32
4472 6700 2.726555 CGATGAGCATTCGTGAAAGG 57.273 50.000 0.00 0.00 0.00 3.11
4653 6882 6.583806 GCTGTCAAAATAAGATCCAACACAAG 59.416 38.462 0.00 0.00 0.00 3.16
4657 6886 5.048083 GTGGCTGTCAAAATAAGATCCAACA 60.048 40.000 0.00 0.00 0.00 3.33
4752 6982 2.846950 ACTTACAGAATACCTGCCCCT 58.153 47.619 0.00 0.00 46.81 4.79
4762 6992 9.998106 TTAAGAAAGCAAGACTACTTACAGAAT 57.002 29.630 0.00 0.00 34.70 2.40
5088 7319 4.614284 CACGAGAATCTGCAATCACAAAAC 59.386 41.667 0.00 0.00 0.00 2.43
5155 7387 6.252599 TGATATATTTCCTGGAACTGCACT 57.747 37.500 9.04 0.00 0.00 4.40
5257 7489 5.361857 CGGAGGGAGTACTACCTATTTTTGA 59.638 44.000 27.44 0.00 46.12 2.69
5357 7589 9.812347 ACCATATGATAGAAATGCTAAATTCCA 57.188 29.630 3.65 0.00 31.66 3.53
5579 7815 1.871789 GCCACACAAACACACGCAC 60.872 57.895 0.00 0.00 0.00 5.34
5588 7824 1.740905 CATGCCAGTGCCACACAAA 59.259 52.632 0.00 0.00 36.74 2.83
5609 7845 5.243426 GACTCTTCAGTCTTCGCTCTTAT 57.757 43.478 0.00 0.00 45.20 1.73
5639 7875 6.390721 ACACTGCTACATCTACAAGTACAAG 58.609 40.000 0.00 0.00 0.00 3.16
5674 7923 4.503910 CCGACTGATTGATTTAGGTCACA 58.496 43.478 0.00 0.00 0.00 3.58
5685 7934 0.810648 GCAATTGGCCGACTGATTGA 59.189 50.000 5.37 0.00 36.11 2.57
5691 7944 0.250901 AAGACTGCAATTGGCCGACT 60.251 50.000 7.72 0.00 43.89 4.18
5692 7945 0.109597 CAAGACTGCAATTGGCCGAC 60.110 55.000 7.72 0.00 43.89 4.79
5699 7952 1.203994 GAGCATGCCAAGACTGCAATT 59.796 47.619 15.66 0.00 42.92 2.32
5713 7983 2.168106 ACTAGGAGAGCAACAGAGCATG 59.832 50.000 0.00 0.00 36.85 4.06
5714 7984 2.465813 ACTAGGAGAGCAACAGAGCAT 58.534 47.619 0.00 0.00 36.85 3.79
5720 7990 3.838244 ACAACAACTAGGAGAGCAACA 57.162 42.857 0.00 0.00 0.00 3.33
5736 8006 5.039333 CAGTACGTACCATAGGCTAACAAC 58.961 45.833 21.80 0.00 0.00 3.32
5737 8007 4.706476 ACAGTACGTACCATAGGCTAACAA 59.294 41.667 21.80 0.00 0.00 2.83
5739 8009 4.907879 ACAGTACGTACCATAGGCTAAC 57.092 45.455 21.80 0.00 0.00 2.34
5740 8010 5.684704 ACTACAGTACGTACCATAGGCTAA 58.315 41.667 25.90 5.58 0.00 3.09
5741 8011 5.296151 ACTACAGTACGTACCATAGGCTA 57.704 43.478 25.90 0.00 0.00 3.93
5742 8012 4.162040 ACTACAGTACGTACCATAGGCT 57.838 45.455 25.90 12.07 0.00 4.58
5743 8013 5.049129 CCTTACTACAGTACGTACCATAGGC 60.049 48.000 25.90 4.42 0.00 3.93
5744 8014 6.291377 TCCTTACTACAGTACGTACCATAGG 58.709 44.000 25.90 19.94 0.00 2.57
5745 8015 6.426328 CCTCCTTACTACAGTACGTACCATAG 59.574 46.154 21.80 22.49 0.00 2.23
5747 8017 5.104360 TCCTCCTTACTACAGTACGTACCAT 60.104 44.000 21.80 12.74 0.00 3.55
5750 8020 6.934048 ATTCCTCCTTACTACAGTACGTAC 57.066 41.667 18.10 18.10 0.00 3.67
5751 8021 8.023021 TCTATTCCTCCTTACTACAGTACGTA 57.977 38.462 0.00 0.00 0.00 3.57
5752 8022 6.893583 TCTATTCCTCCTTACTACAGTACGT 58.106 40.000 0.00 0.00 0.00 3.57
5753 8023 6.427547 CCTCTATTCCTCCTTACTACAGTACG 59.572 46.154 0.00 0.00 0.00 3.67
5754 8024 7.289310 ACCTCTATTCCTCCTTACTACAGTAC 58.711 42.308 0.00 0.00 0.00 2.73
5755 8025 7.463054 ACCTCTATTCCTCCTTACTACAGTA 57.537 40.000 0.00 0.00 0.00 2.74
5757 8027 7.231115 GGTTACCTCTATTCCTCCTTACTACAG 59.769 44.444 0.00 0.00 0.00 2.74
5865 8151 3.206150 TGAACTGTTTTCCAGAGCAGAC 58.794 45.455 0.00 0.00 44.49 3.51
5866 8152 3.470709 CTGAACTGTTTTCCAGAGCAGA 58.529 45.455 0.00 0.00 44.49 4.26
5867 8153 2.551459 CCTGAACTGTTTTCCAGAGCAG 59.449 50.000 8.74 2.89 44.49 4.24
5868 8154 2.575532 CCTGAACTGTTTTCCAGAGCA 58.424 47.619 8.74 0.00 44.49 4.26
5869 8155 1.268079 GCCTGAACTGTTTTCCAGAGC 59.732 52.381 8.74 7.13 44.49 4.09
5912 8208 2.510238 GACCCGCTACTGCTGCTG 60.510 66.667 4.89 4.89 36.97 4.41
5913 8209 4.135153 CGACCCGCTACTGCTGCT 62.135 66.667 0.00 0.00 36.97 4.24
5999 8307 0.834612 ACTGACCACAACCCGAAGAA 59.165 50.000 0.00 0.00 0.00 2.52
6015 8323 6.713903 AGAGATGCATAATTATTCCCACACTG 59.286 38.462 0.00 0.00 0.00 3.66
6157 8465 1.210234 CTACATCACCCCTGCATCACA 59.790 52.381 0.00 0.00 0.00 3.58
6376 8684 2.017782 TCGCCAGCGCCATATTAAAAA 58.982 42.857 2.29 0.00 39.59 1.94



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.