Multiple sequence alignment - TraesCS5A01G139700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G139700 chr5A 100.000 3657 0 0 1 3657 311947633 311943977 0.000000e+00 6754.0
1 TraesCS5A01G139700 chr5B 89.863 1529 123 11 2131 3647 256915953 256914445 0.000000e+00 1936.0
2 TraesCS5A01G139700 chr5B 93.899 967 34 6 689 1633 256917387 256916424 0.000000e+00 1435.0
3 TraesCS5A01G139700 chr5B 79.369 412 34 21 61 468 256918048 256917684 3.650000e-60 243.0
4 TraesCS5A01G139700 chr5B 91.667 120 6 2 471 589 256917654 256917538 2.920000e-36 163.0
5 TraesCS5A01G139700 chr5B 100.000 73 0 0 2063 2135 256916229 256916157 6.370000e-28 135.0
6 TraesCS5A01G139700 chr5B 83.962 106 14 3 319 422 304270732 304270628 8.360000e-17 99.0
7 TraesCS5A01G139700 chr5D 93.355 1219 47 8 2032 3239 241953531 241952336 0.000000e+00 1772.0
8 TraesCS5A01G139700 chr5D 94.159 1130 42 12 640 1746 241954655 241953527 0.000000e+00 1700.0
9 TraesCS5A01G139700 chr5D 95.096 469 15 3 3196 3657 241952342 241951875 0.000000e+00 732.0
10 TraesCS5A01G139700 chr5D 89.677 155 12 2 471 625 241954858 241954708 1.040000e-45 195.0
11 TraesCS5A01G139700 chr5D 91.139 79 6 1 63 141 241956939 241956862 4.990000e-19 106.0
12 TraesCS5A01G139700 chr7D 89.933 298 26 1 1743 2036 587242994 587243291 7.410000e-102 381.0
13 TraesCS5A01G139700 chr7D 89.761 293 26 1 1744 2032 176883157 176883449 4.460000e-99 372.0
14 TraesCS5A01G139700 chr7D 86.567 268 34 2 2807 3074 626636282 626636547 9.930000e-76 294.0
15 TraesCS5A01G139700 chr7D 86.194 268 34 3 2807 3074 626730532 626730796 1.660000e-73 287.0
16 TraesCS5A01G139700 chr6B 90.169 295 25 1 1746 2036 272826108 272825814 7.410000e-102 381.0
17 TraesCS5A01G139700 chr2A 89.109 303 29 1 1743 2041 31613500 31613802 1.240000e-99 374.0
18 TraesCS5A01G139700 chr2A 89.369 301 25 4 1742 2036 689530132 689530431 4.460000e-99 372.0
19 TraesCS5A01G139700 chr2A 91.803 61 3 1 484 542 293150400 293150340 2.340000e-12 84.2
20 TraesCS5A01G139700 chr6D 89.456 294 25 3 1745 2033 148774730 148775022 2.070000e-97 366.0
21 TraesCS5A01G139700 chr1A 89.226 297 27 2 1742 2034 339659778 339659483 2.070000e-97 366.0
22 TraesCS5A01G139700 chr1A 85.246 61 8 1 325 384 342391731 342391791 1.100000e-05 62.1
23 TraesCS5A01G139700 chr1D 87.774 319 29 6 1741 2051 410600570 410600886 7.460000e-97 364.0
24 TraesCS5A01G139700 chr3D 88.591 298 30 1 1745 2038 24203403 24203106 3.470000e-95 359.0
25 TraesCS5A01G139700 chr3D 82.803 157 14 6 482 625 2319123 2319279 1.070000e-25 128.0
26 TraesCS5A01G139700 chrUn 86.567 268 34 2 2807 3074 385641340 385641075 9.930000e-76 294.0
27 TraesCS5A01G139700 chrUn 86.567 268 34 2 2807 3074 396064724 396064459 9.930000e-76 294.0
28 TraesCS5A01G139700 chr7A 86.567 268 34 2 2807 3074 4941705 4941440 9.930000e-76 294.0
29 TraesCS5A01G139700 chr7A 92.683 41 2 1 3354 3393 608677514 608677554 1.420000e-04 58.4
30 TraesCS5A01G139700 chr4D 86.194 268 35 2 2807 3074 109495754 109495489 4.620000e-74 289.0
31 TraesCS5A01G139700 chr4D 86.194 268 35 2 2807 3074 123539853 123539588 4.620000e-74 289.0
32 TraesCS5A01G139700 chr7B 78.289 152 20 8 482 624 570172576 570172429 6.510000e-13 86.1
33 TraesCS5A01G139700 chr4B 92.453 53 2 2 1 51 445644682 445644630 1.410000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G139700 chr5A 311943977 311947633 3656 True 6754.0 6754 100.0000 1 3657 1 chr5A.!!$R1 3656
1 TraesCS5A01G139700 chr5B 256914445 256918048 3603 True 782.4 1936 90.9596 61 3647 5 chr5B.!!$R2 3586
2 TraesCS5A01G139700 chr5D 241951875 241956939 5064 True 901.0 1772 92.6852 63 3657 5 chr5D.!!$R1 3594

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
55 56 0.249868 CGGGCTCAGATGCGGATTTA 60.250 55.0 0.0 0.0 0.0 1.40 F
1498 3315 0.175302 AGCTCAACGAGATGCTCCAG 59.825 55.0 0.0 0.0 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1921 3740 0.109132 CCGCTGCCAAAATCTGAACC 60.109 55.0 0.0 0.0 0.0 3.62 R
3105 5144 0.108615 CAACCGTTTTGCACCCACAA 60.109 50.0 0.0 0.0 0.0 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 2.830370 GGGAGCATTTGAGCCCGG 60.830 66.667 0.00 0.00 34.23 5.73
39 40 2.830370 GGAGCATTTGAGCCCGGG 60.830 66.667 19.09 19.09 34.23 5.73
40 41 3.521796 GAGCATTTGAGCCCGGGC 61.522 66.667 39.29 39.29 42.33 6.13
52 53 3.933722 CCGGGCTCAGATGCGGAT 61.934 66.667 0.00 0.00 0.00 4.18
53 54 2.109799 CGGGCTCAGATGCGGATT 59.890 61.111 0.00 0.00 0.00 3.01
54 55 1.524621 CGGGCTCAGATGCGGATTT 60.525 57.895 0.00 0.00 0.00 2.17
55 56 0.249868 CGGGCTCAGATGCGGATTTA 60.250 55.000 0.00 0.00 0.00 1.40
56 57 1.230324 GGGCTCAGATGCGGATTTAC 58.770 55.000 0.00 0.00 0.00 2.01
57 58 0.861837 GGCTCAGATGCGGATTTACG 59.138 55.000 0.00 0.00 0.00 3.18
58 59 1.538204 GGCTCAGATGCGGATTTACGA 60.538 52.381 0.00 0.00 35.47 3.43
59 60 1.523095 GCTCAGATGCGGATTTACGAC 59.477 52.381 0.00 0.00 35.47 4.34
60 61 2.799917 GCTCAGATGCGGATTTACGACT 60.800 50.000 0.00 0.00 35.47 4.18
61 62 3.550233 GCTCAGATGCGGATTTACGACTA 60.550 47.826 0.00 0.00 35.47 2.59
62 63 4.799678 CTCAGATGCGGATTTACGACTAT 58.200 43.478 0.00 0.00 35.47 2.12
63 64 5.196341 TCAGATGCGGATTTACGACTATT 57.804 39.130 0.00 0.00 35.47 1.73
64 65 5.597806 TCAGATGCGGATTTACGACTATTT 58.402 37.500 0.00 0.00 35.47 1.40
65 66 6.741109 TCAGATGCGGATTTACGACTATTTA 58.259 36.000 0.00 0.00 35.47 1.40
66 67 6.639686 TCAGATGCGGATTTACGACTATTTAC 59.360 38.462 0.00 0.00 35.47 2.01
67 68 6.419710 CAGATGCGGATTTACGACTATTTACA 59.580 38.462 0.00 0.00 35.47 2.41
68 69 6.641314 AGATGCGGATTTACGACTATTTACAG 59.359 38.462 0.00 0.00 35.47 2.74
69 70 4.505191 TGCGGATTTACGACTATTTACAGC 59.495 41.667 0.00 0.00 35.47 4.40
70 71 4.084693 GCGGATTTACGACTATTTACAGCC 60.085 45.833 0.00 0.00 35.47 4.85
71 72 4.147653 CGGATTTACGACTATTTACAGCCG 59.852 45.833 0.00 0.00 35.47 5.52
132 133 7.816995 GTGTTATTTTGCACATAATTCAAGGGA 59.183 33.333 0.00 0.00 35.81 4.20
146 1620 3.453559 AGGGACTTGTATTTCGGCG 57.546 52.632 0.00 0.00 27.25 6.46
152 1626 3.991773 GGACTTGTATTTCGGCGCATATA 59.008 43.478 10.83 0.00 0.00 0.86
263 1739 0.901124 ACAGCACAGATCTGTCTCCC 59.099 55.000 25.58 13.58 42.83 4.30
461 2149 4.701171 AGTTCAGAACGAAGGGAGTACTAG 59.299 45.833 7.68 0.00 33.09 2.57
468 2156 2.097791 CGAAGGGAGTACTAGCTGTCAC 59.902 54.545 0.00 0.00 0.00 3.67
469 2157 2.901338 AGGGAGTACTAGCTGTCACA 57.099 50.000 0.00 0.00 0.00 3.58
475 2190 4.477780 GAGTACTAGCTGTCACAGTTGTC 58.522 47.826 6.68 0.00 33.43 3.18
600 2350 1.054574 GTGTGTTTCACATGCATGCG 58.945 50.000 26.53 17.70 46.32 4.73
603 2353 1.980844 GTGTTTCACATGCATGCGAAG 59.019 47.619 26.53 13.77 31.38 3.79
630 2380 9.729023 TTTCGCGATGAAATGATATTTATGTTT 57.271 25.926 10.88 0.00 41.59 2.83
633 2383 8.957028 CGCGATGAAATGATATTTATGTTTGTT 58.043 29.630 0.00 0.00 0.00 2.83
745 2545 3.561310 CACAAGAGCACTTTAGCTGTTCA 59.439 43.478 0.00 0.00 43.71 3.18
748 2548 5.152097 CAAGAGCACTTTAGCTGTTCATTG 58.848 41.667 0.00 0.00 43.71 2.82
859 2659 0.982673 CGACGAACAAGACGACATCC 59.017 55.000 0.00 0.00 34.70 3.51
862 2662 1.611977 ACGAACAAGACGACATCCAGA 59.388 47.619 0.00 0.00 34.70 3.86
909 2710 2.126502 GGATTTGGCGGCAACACG 60.127 61.111 25.48 0.00 0.00 4.49
1071 2872 0.242825 TCTTCGACAAAGACGGCGAT 59.757 50.000 16.62 0.00 39.12 4.58
1078 2879 0.734942 CAAAGACGGCGATGGTACGT 60.735 55.000 16.62 0.00 44.35 3.57
1096 2897 4.724074 ACGTGCCATCAATCAATCAATT 57.276 36.364 0.00 0.00 0.00 2.32
1498 3315 0.175302 AGCTCAACGAGATGCTCCAG 59.825 55.000 0.00 0.00 0.00 3.86
1728 3547 9.720769 AAAAGGTTCTAAGTAGATCATTTTCGA 57.279 29.630 12.58 0.00 39.66 3.71
1752 3571 3.612795 AAAAAGGTTCTAAGGCCCTGT 57.387 42.857 0.00 0.00 0.00 4.00
1753 3572 3.612795 AAAAGGTTCTAAGGCCCTGTT 57.387 42.857 0.00 0.00 0.00 3.16
1755 3574 2.586648 AGGTTCTAAGGCCCTGTTTG 57.413 50.000 0.00 0.00 0.00 2.93
1756 3575 1.075536 AGGTTCTAAGGCCCTGTTTGG 59.924 52.381 0.00 0.00 0.00 3.28
1757 3576 1.203013 GGTTCTAAGGCCCTGTTTGGT 60.203 52.381 0.00 0.00 0.00 3.67
1759 3578 2.557056 GTTCTAAGGCCCTGTTTGGTTC 59.443 50.000 0.00 0.00 0.00 3.62
1760 3579 1.777878 TCTAAGGCCCTGTTTGGTTCA 59.222 47.619 0.00 0.00 0.00 3.18
1761 3580 2.162681 CTAAGGCCCTGTTTGGTTCAG 58.837 52.381 0.00 0.00 0.00 3.02
1763 3582 1.531602 GGCCCTGTTTGGTTCAGCT 60.532 57.895 0.00 0.00 0.00 4.24
1764 3583 1.662044 GCCCTGTTTGGTTCAGCTG 59.338 57.895 7.63 7.63 0.00 4.24
1766 3585 0.670162 CCCTGTTTGGTTCAGCTGTG 59.330 55.000 14.67 0.00 0.00 3.66
1767 3586 0.670162 CCTGTTTGGTTCAGCTGTGG 59.330 55.000 14.67 0.11 0.00 4.17
1768 3587 1.679139 CTGTTTGGTTCAGCTGTGGA 58.321 50.000 14.67 0.00 0.00 4.02
1770 3589 2.624838 CTGTTTGGTTCAGCTGTGGATT 59.375 45.455 14.67 0.00 0.00 3.01
1771 3590 3.030291 TGTTTGGTTCAGCTGTGGATTT 58.970 40.909 14.67 0.00 0.00 2.17
1772 3591 3.068024 TGTTTGGTTCAGCTGTGGATTTC 59.932 43.478 14.67 2.25 0.00 2.17
1773 3592 2.957402 TGGTTCAGCTGTGGATTTCT 57.043 45.000 14.67 0.00 0.00 2.52
1775 3594 4.365514 TGGTTCAGCTGTGGATTTCTAA 57.634 40.909 14.67 0.00 0.00 2.10
1776 3595 4.724399 TGGTTCAGCTGTGGATTTCTAAA 58.276 39.130 14.67 0.00 0.00 1.85
1777 3596 5.136828 TGGTTCAGCTGTGGATTTCTAAAA 58.863 37.500 14.67 0.00 0.00 1.52
1778 3597 5.774690 TGGTTCAGCTGTGGATTTCTAAAAT 59.225 36.000 14.67 0.00 0.00 1.82
1779 3598 6.071952 TGGTTCAGCTGTGGATTTCTAAAATC 60.072 38.462 14.67 4.23 0.00 2.17
1780 3599 6.151817 GGTTCAGCTGTGGATTTCTAAAATCT 59.848 38.462 14.67 0.00 0.00 2.40
1782 3601 5.124457 TCAGCTGTGGATTTCTAAAATCTGC 59.876 40.000 14.67 10.28 0.00 4.26
1783 3602 5.125097 CAGCTGTGGATTTCTAAAATCTGCT 59.875 40.000 5.25 11.77 0.00 4.24
1784 3603 5.125097 AGCTGTGGATTTCTAAAATCTGCTG 59.875 40.000 11.11 9.30 0.00 4.41
1785 3604 5.105997 GCTGTGGATTTCTAAAATCTGCTGT 60.106 40.000 11.11 0.00 0.00 4.40
1787 3606 5.183713 TGTGGATTTCTAAAATCTGCTGTGG 59.816 40.000 11.11 0.00 0.00 4.17
1788 3607 5.415701 GTGGATTTCTAAAATCTGCTGTGGA 59.584 40.000 11.11 0.00 0.00 4.02
1789 3608 6.009589 TGGATTTCTAAAATCTGCTGTGGAA 58.990 36.000 11.11 0.00 0.00 3.53
1791 3610 7.015098 TGGATTTCTAAAATCTGCTGTGGAAAA 59.985 33.333 11.11 0.00 0.00 2.29
1792 3611 7.872483 GGATTTCTAAAATCTGCTGTGGAAAAA 59.128 33.333 11.11 0.00 0.00 1.94
1793 3612 9.428097 GATTTCTAAAATCTGCTGTGGAAAAAT 57.572 29.630 5.39 0.00 0.00 1.82
1795 3614 9.912634 TTTCTAAAATCTGCTGTGGAAAAATAG 57.087 29.630 0.00 0.00 0.00 1.73
1797 3616 5.990120 AAATCTGCTGTGGAAAAATAGCT 57.010 34.783 0.00 0.00 37.10 3.32
1798 3617 4.978083 ATCTGCTGTGGAAAAATAGCTG 57.022 40.909 0.00 0.00 37.10 4.24
1799 3618 3.754965 TCTGCTGTGGAAAAATAGCTGT 58.245 40.909 0.00 0.00 37.10 4.40
1800 3619 3.503363 TCTGCTGTGGAAAAATAGCTGTG 59.497 43.478 0.00 0.00 37.10 3.66
1801 3620 3.485394 TGCTGTGGAAAAATAGCTGTGA 58.515 40.909 0.00 0.00 37.10 3.58
1802 3621 3.888323 TGCTGTGGAAAAATAGCTGTGAA 59.112 39.130 0.00 0.00 37.10 3.18
1803 3622 4.340666 TGCTGTGGAAAAATAGCTGTGAAA 59.659 37.500 0.00 0.00 37.10 2.69
1804 3623 5.163468 TGCTGTGGAAAAATAGCTGTGAAAA 60.163 36.000 0.00 0.00 37.10 2.29
1828 3647 8.706322 AAAACTAATGTGGAAAAGATGTAGGT 57.294 30.769 0.00 0.00 0.00 3.08
1829 3648 7.923414 AACTAATGTGGAAAAGATGTAGGTC 57.077 36.000 0.00 0.00 0.00 3.85
1832 3651 8.109634 ACTAATGTGGAAAAGATGTAGGTCATT 58.890 33.333 0.00 0.00 36.83 2.57
1833 3652 7.781324 AATGTGGAAAAGATGTAGGTCATTT 57.219 32.000 0.00 0.00 36.83 2.32
1834 3653 6.573664 TGTGGAAAAGATGTAGGTCATTTG 57.426 37.500 0.00 0.00 36.83 2.32
1835 3654 6.303054 TGTGGAAAAGATGTAGGTCATTTGA 58.697 36.000 0.00 0.00 36.83 2.69
1837 3656 7.286546 TGTGGAAAAGATGTAGGTCATTTGAAA 59.713 33.333 0.00 0.00 36.83 2.69
1838 3657 8.141268 GTGGAAAAGATGTAGGTCATTTGAAAA 58.859 33.333 0.00 0.00 36.83 2.29
1840 3659 8.978539 GGAAAAGATGTAGGTCATTTGAAAAAC 58.021 33.333 0.00 0.00 36.83 2.43
1841 3660 9.750125 GAAAAGATGTAGGTCATTTGAAAAACT 57.250 29.630 0.00 0.00 36.83 2.66
1844 3663 8.045176 AGATGTAGGTCATTTGAAAAACTAGC 57.955 34.615 0.00 0.00 36.83 3.42
1845 3664 7.885399 AGATGTAGGTCATTTGAAAAACTAGCT 59.115 33.333 0.00 0.00 36.83 3.32
1846 3665 7.202016 TGTAGGTCATTTGAAAAACTAGCTG 57.798 36.000 0.00 0.00 0.00 4.24
1847 3666 6.995686 TGTAGGTCATTTGAAAAACTAGCTGA 59.004 34.615 0.00 0.00 0.00 4.26
1850 3669 8.045176 AGGTCATTTGAAAAACTAGCTGATAC 57.955 34.615 0.00 0.00 0.00 2.24
1851 3670 7.665559 AGGTCATTTGAAAAACTAGCTGATACA 59.334 33.333 0.00 0.00 0.00 2.29
1852 3671 8.296713 GGTCATTTGAAAAACTAGCTGATACAA 58.703 33.333 0.00 0.00 0.00 2.41
1853 3672 9.846248 GTCATTTGAAAAACTAGCTGATACAAT 57.154 29.630 0.00 0.00 0.00 2.71
1875 3694 3.311486 TTTTTAGATTTTGGCCCGCAG 57.689 42.857 0.00 0.00 0.00 5.18
1876 3695 0.530288 TTTAGATTTTGGCCCGCAGC 59.470 50.000 0.00 0.00 42.60 5.25
1877 3696 0.610509 TTAGATTTTGGCCCGCAGCA 60.611 50.000 0.00 0.00 46.50 4.41
1878 3697 1.031571 TAGATTTTGGCCCGCAGCAG 61.032 55.000 0.00 0.00 46.50 4.24
1879 3698 2.283101 ATTTTGGCCCGCAGCAGA 60.283 55.556 0.00 0.00 46.50 4.26
1880 3699 1.876497 GATTTTGGCCCGCAGCAGAA 61.876 55.000 0.00 0.00 46.50 3.02
1881 3700 1.259840 ATTTTGGCCCGCAGCAGAAT 61.260 50.000 0.00 0.00 46.50 2.40
1882 3701 1.876497 TTTTGGCCCGCAGCAGAATC 61.876 55.000 0.00 0.00 46.50 2.52
1883 3702 3.565961 TTGGCCCGCAGCAGAATCA 62.566 57.895 0.00 0.00 46.50 2.57
1884 3703 3.207669 GGCCCGCAGCAGAATCAG 61.208 66.667 0.00 0.00 46.50 2.90
1885 3704 2.124983 GCCCGCAGCAGAATCAGA 60.125 61.111 0.00 0.00 42.97 3.27
1886 3705 1.525535 GCCCGCAGCAGAATCAGAT 60.526 57.895 0.00 0.00 42.97 2.90
1887 3706 1.099879 GCCCGCAGCAGAATCAGATT 61.100 55.000 0.00 0.00 42.97 2.40
1888 3707 1.386533 CCCGCAGCAGAATCAGATTT 58.613 50.000 0.00 0.00 0.00 2.17
1889 3708 1.747355 CCCGCAGCAGAATCAGATTTT 59.253 47.619 0.00 0.00 0.00 1.82
1890 3709 2.479049 CCCGCAGCAGAATCAGATTTTG 60.479 50.000 8.97 8.97 0.00 2.44
1891 3710 2.421073 CCGCAGCAGAATCAGATTTTGA 59.579 45.455 16.19 0.00 40.85 2.69
1892 3711 3.119743 CCGCAGCAGAATCAGATTTTGAA 60.120 43.478 16.19 0.00 39.77 2.69
1893 3712 4.478699 CGCAGCAGAATCAGATTTTGAAA 58.521 39.130 16.19 0.00 39.77 2.69
1894 3713 4.919168 CGCAGCAGAATCAGATTTTGAAAA 59.081 37.500 16.19 0.00 39.77 2.29
1895 3714 5.060569 CGCAGCAGAATCAGATTTTGAAAAG 59.939 40.000 16.19 4.86 39.77 2.27
1896 3715 5.163982 GCAGCAGAATCAGATTTTGAAAAGC 60.164 40.000 16.19 9.88 39.77 3.51
1897 3716 5.924254 CAGCAGAATCAGATTTTGAAAAGCA 59.076 36.000 16.19 0.00 39.77 3.91
1898 3717 5.924825 AGCAGAATCAGATTTTGAAAAGCAC 59.075 36.000 16.19 0.00 39.77 4.40
1899 3718 5.164119 GCAGAATCAGATTTTGAAAAGCACG 60.164 40.000 16.19 0.00 39.77 5.34
1900 3719 5.916883 CAGAATCAGATTTTGAAAAGCACGT 59.083 36.000 8.71 0.00 39.77 4.49
1901 3720 6.087291 CAGAATCAGATTTTGAAAAGCACGTC 59.913 38.462 8.71 0.63 39.77 4.34
1902 3721 4.223320 TCAGATTTTGAAAAGCACGTCC 57.777 40.909 8.71 0.00 31.34 4.79
1903 3722 3.882888 TCAGATTTTGAAAAGCACGTCCT 59.117 39.130 8.71 0.00 31.34 3.85
1904 3723 3.976942 CAGATTTTGAAAAGCACGTCCTG 59.023 43.478 8.71 0.00 0.00 3.86
1905 3724 2.861462 TTTTGAAAAGCACGTCCTGG 57.139 45.000 0.00 0.00 0.00 4.45
1906 3725 1.028905 TTTGAAAAGCACGTCCTGGG 58.971 50.000 0.00 0.00 0.00 4.45
1907 3726 1.452145 TTGAAAAGCACGTCCTGGGC 61.452 55.000 0.00 0.00 0.00 5.36
1908 3727 1.600916 GAAAAGCACGTCCTGGGCT 60.601 57.895 0.00 0.00 40.14 5.19
1909 3728 1.856265 GAAAAGCACGTCCTGGGCTG 61.856 60.000 0.00 0.00 38.04 4.85
1913 3732 2.743928 CACGTCCTGGGCTGCTTC 60.744 66.667 0.00 0.00 0.00 3.86
1914 3733 4.021925 ACGTCCTGGGCTGCTTCC 62.022 66.667 0.00 0.00 0.00 3.46
1918 3737 4.729918 CCTGGGCTGCTTCCGCTT 62.730 66.667 0.00 0.00 36.97 4.68
1919 3738 2.674380 CTGGGCTGCTTCCGCTTT 60.674 61.111 0.00 0.00 36.97 3.51
1920 3739 2.203480 TGGGCTGCTTCCGCTTTT 60.203 55.556 0.00 0.00 36.97 2.27
1921 3740 2.259511 GGGCTGCTTCCGCTTTTG 59.740 61.111 0.00 0.00 36.97 2.44
1922 3741 2.259511 GGCTGCTTCCGCTTTTGG 59.740 61.111 0.00 0.00 36.97 3.28
1923 3742 2.564721 GGCTGCTTCCGCTTTTGGT 61.565 57.895 0.00 0.00 36.97 3.67
1924 3743 1.363807 GCTGCTTCCGCTTTTGGTT 59.636 52.632 0.00 0.00 36.97 3.67
1925 3744 0.664466 GCTGCTTCCGCTTTTGGTTC 60.664 55.000 0.00 0.00 36.97 3.62
1926 3745 0.667993 CTGCTTCCGCTTTTGGTTCA 59.332 50.000 0.00 0.00 36.97 3.18
1927 3746 0.667993 TGCTTCCGCTTTTGGTTCAG 59.332 50.000 0.00 0.00 36.97 3.02
1928 3747 0.951558 GCTTCCGCTTTTGGTTCAGA 59.048 50.000 0.00 0.00 0.00 3.27
1929 3748 1.541588 GCTTCCGCTTTTGGTTCAGAT 59.458 47.619 0.00 0.00 0.00 2.90
1930 3749 2.029918 GCTTCCGCTTTTGGTTCAGATT 60.030 45.455 0.00 0.00 0.00 2.40
1931 3750 3.552890 GCTTCCGCTTTTGGTTCAGATTT 60.553 43.478 0.00 0.00 0.00 2.17
1932 3751 4.620982 CTTCCGCTTTTGGTTCAGATTTT 58.379 39.130 0.00 0.00 0.00 1.82
1933 3752 3.976169 TCCGCTTTTGGTTCAGATTTTG 58.024 40.909 0.00 0.00 0.00 2.44
1934 3753 3.059166 CCGCTTTTGGTTCAGATTTTGG 58.941 45.455 0.00 0.00 0.00 3.28
1935 3754 2.476241 CGCTTTTGGTTCAGATTTTGGC 59.524 45.455 0.00 0.00 0.00 4.52
1936 3755 3.465871 GCTTTTGGTTCAGATTTTGGCA 58.534 40.909 0.00 0.00 0.00 4.92
1937 3756 3.495753 GCTTTTGGTTCAGATTTTGGCAG 59.504 43.478 0.00 0.00 0.00 4.85
1938 3757 2.818130 TTGGTTCAGATTTTGGCAGC 57.182 45.000 0.00 0.00 0.00 5.25
1939 3758 0.597568 TGGTTCAGATTTTGGCAGCG 59.402 50.000 0.00 0.00 0.00 5.18
1940 3759 0.109132 GGTTCAGATTTTGGCAGCGG 60.109 55.000 0.00 0.00 0.00 5.52
1941 3760 0.881118 GTTCAGATTTTGGCAGCGGA 59.119 50.000 0.00 0.00 0.00 5.54
1942 3761 1.474077 GTTCAGATTTTGGCAGCGGAT 59.526 47.619 0.00 0.00 0.00 4.18
1943 3762 1.838112 TCAGATTTTGGCAGCGGATT 58.162 45.000 0.00 0.00 0.00 3.01
1944 3763 2.170166 TCAGATTTTGGCAGCGGATTT 58.830 42.857 0.00 0.00 0.00 2.17
1945 3764 2.164219 TCAGATTTTGGCAGCGGATTTC 59.836 45.455 0.00 0.00 0.00 2.17
1946 3765 2.165030 CAGATTTTGGCAGCGGATTTCT 59.835 45.455 0.00 0.00 0.00 2.52
1947 3766 2.165030 AGATTTTGGCAGCGGATTTCTG 59.835 45.455 0.00 0.00 34.79 3.02
1948 3767 1.614996 TTTTGGCAGCGGATTTCTGA 58.385 45.000 0.00 0.00 33.54 3.27
1949 3768 1.614996 TTTGGCAGCGGATTTCTGAA 58.385 45.000 0.00 0.00 33.54 3.02
1950 3769 1.614996 TTGGCAGCGGATTTCTGAAA 58.385 45.000 5.15 5.15 33.54 2.69
1951 3770 1.838112 TGGCAGCGGATTTCTGAAAT 58.162 45.000 15.09 15.09 33.54 2.17
1952 3771 1.745087 TGGCAGCGGATTTCTGAAATC 59.255 47.619 27.18 27.18 45.12 2.17
1953 3772 1.268234 GGCAGCGGATTTCTGAAATCG 60.268 52.381 27.62 23.73 46.45 3.34
1954 3773 1.268234 GCAGCGGATTTCTGAAATCGG 60.268 52.381 30.66 30.66 46.45 4.18
1955 3774 2.279741 CAGCGGATTTCTGAAATCGGA 58.720 47.619 35.27 7.81 46.45 4.55
1956 3775 2.874701 CAGCGGATTTCTGAAATCGGAT 59.125 45.455 35.27 30.82 46.45 4.18
1957 3776 3.313526 CAGCGGATTTCTGAAATCGGATT 59.686 43.478 35.27 25.27 46.45 3.01
1958 3777 3.947834 AGCGGATTTCTGAAATCGGATTT 59.052 39.130 35.27 23.62 46.45 2.17
1959 3778 4.399303 AGCGGATTTCTGAAATCGGATTTT 59.601 37.500 35.27 21.98 46.45 1.82
1960 3779 4.500477 GCGGATTTCTGAAATCGGATTTTG 59.500 41.667 35.27 20.55 46.45 2.44
1961 3780 4.500477 CGGATTTCTGAAATCGGATTTTGC 59.500 41.667 31.03 17.54 46.45 3.68
1962 3781 5.654497 GGATTTCTGAAATCGGATTTTGCT 58.346 37.500 27.62 1.41 46.45 3.91
1963 3782 5.517770 GGATTTCTGAAATCGGATTTTGCTG 59.482 40.000 27.62 9.31 46.45 4.41
1964 3783 4.439305 TTCTGAAATCGGATTTTGCTGG 57.561 40.909 16.49 6.59 31.47 4.85
1965 3784 3.684908 TCTGAAATCGGATTTTGCTGGA 58.315 40.909 16.49 8.42 31.47 3.86
1966 3785 4.272489 TCTGAAATCGGATTTTGCTGGAT 58.728 39.130 16.49 0.00 31.47 3.41
1967 3786 4.706476 TCTGAAATCGGATTTTGCTGGATT 59.294 37.500 16.49 0.00 31.47 3.01
1968 3787 4.997565 TGAAATCGGATTTTGCTGGATTC 58.002 39.130 16.49 2.45 31.47 2.52
1969 3788 4.462132 TGAAATCGGATTTTGCTGGATTCA 59.538 37.500 16.49 4.90 31.47 2.57
1970 3789 4.376340 AATCGGATTTTGCTGGATTCAC 57.624 40.909 0.00 0.00 0.00 3.18
1971 3790 2.091541 TCGGATTTTGCTGGATTCACC 58.908 47.619 0.00 0.00 39.54 4.02
1972 3791 1.134946 CGGATTTTGCTGGATTCACCC 59.865 52.381 0.00 0.00 38.00 4.61
1973 3792 2.460669 GGATTTTGCTGGATTCACCCT 58.539 47.619 0.00 0.00 38.00 4.34
1974 3793 2.833943 GGATTTTGCTGGATTCACCCTT 59.166 45.455 0.00 0.00 38.00 3.95
1975 3794 3.261643 GGATTTTGCTGGATTCACCCTTT 59.738 43.478 0.00 0.00 38.00 3.11
1976 3795 3.749665 TTTTGCTGGATTCACCCTTTG 57.250 42.857 0.00 0.00 38.00 2.77
1977 3796 1.631405 TTGCTGGATTCACCCTTTGG 58.369 50.000 0.00 0.00 38.00 3.28
1979 3798 1.133199 TGCTGGATTCACCCTTTGGTT 60.133 47.619 0.00 0.00 44.75 3.67
1980 3799 1.970640 GCTGGATTCACCCTTTGGTTT 59.029 47.619 0.00 0.00 44.75 3.27
1981 3800 2.368548 GCTGGATTCACCCTTTGGTTTT 59.631 45.455 0.00 0.00 44.75 2.43
1982 3801 3.554960 GCTGGATTCACCCTTTGGTTTTC 60.555 47.826 0.00 0.00 44.75 2.29
1983 3802 3.897505 CTGGATTCACCCTTTGGTTTTCT 59.102 43.478 0.00 0.00 44.75 2.52
1984 3803 3.640967 TGGATTCACCCTTTGGTTTTCTG 59.359 43.478 0.00 0.00 44.75 3.02
1985 3804 3.554960 GGATTCACCCTTTGGTTTTCTGC 60.555 47.826 0.00 0.00 44.75 4.26
1986 3805 2.452600 TCACCCTTTGGTTTTCTGCT 57.547 45.000 0.00 0.00 44.75 4.24
1987 3806 2.031120 TCACCCTTTGGTTTTCTGCTG 58.969 47.619 0.00 0.00 44.75 4.41
1988 3807 0.752658 ACCCTTTGGTTTTCTGCTGC 59.247 50.000 0.00 0.00 44.75 5.25
1989 3808 0.318955 CCCTTTGGTTTTCTGCTGCG 60.319 55.000 0.00 0.00 0.00 5.18
1990 3809 0.940991 CCTTTGGTTTTCTGCTGCGC 60.941 55.000 0.00 0.00 0.00 6.09
1991 3810 1.270777 CTTTGGTTTTCTGCTGCGCG 61.271 55.000 0.00 0.00 0.00 6.86
1992 3811 2.676016 TTTGGTTTTCTGCTGCGCGG 62.676 55.000 13.18 13.18 36.06 6.46
1994 3813 4.326766 GTTTTCTGCTGCGCGGCA 62.327 61.111 39.10 39.10 40.15 5.69
2006 3825 4.223964 GCGGCAGCGAAATCCGTC 62.224 66.667 0.00 0.00 44.58 4.79
2007 3826 3.913573 CGGCAGCGAAATCCGTCG 61.914 66.667 0.00 0.00 43.98 5.12
2008 3827 2.508439 GGCAGCGAAATCCGTCGA 60.508 61.111 0.00 0.00 43.86 4.20
2009 3828 1.883084 GGCAGCGAAATCCGTCGAT 60.883 57.895 0.00 0.00 43.86 3.59
2010 3829 0.596600 GGCAGCGAAATCCGTCGATA 60.597 55.000 0.00 0.00 43.86 2.92
2011 3830 1.205657 GCAGCGAAATCCGTCGATAA 58.794 50.000 0.00 0.00 43.86 1.75
2012 3831 1.591158 GCAGCGAAATCCGTCGATAAA 59.409 47.619 0.00 0.00 43.86 1.40
2013 3832 2.029970 GCAGCGAAATCCGTCGATAAAA 59.970 45.455 0.00 0.00 43.86 1.52
2014 3833 3.841372 GCAGCGAAATCCGTCGATAAAAG 60.841 47.826 0.00 0.00 43.86 2.27
2015 3834 2.864343 AGCGAAATCCGTCGATAAAAGG 59.136 45.455 0.00 0.00 43.86 3.11
2016 3835 2.606272 GCGAAATCCGTCGATAAAAGGT 59.394 45.455 0.00 0.00 43.86 3.50
2017 3836 3.543460 GCGAAATCCGTCGATAAAAGGTG 60.543 47.826 0.00 0.00 43.86 4.00
2018 3837 3.861113 CGAAATCCGTCGATAAAAGGTGA 59.139 43.478 0.00 0.00 43.86 4.02
2019 3838 4.327898 CGAAATCCGTCGATAAAAGGTGAA 59.672 41.667 0.00 0.00 43.86 3.18
2020 3839 5.541098 AAATCCGTCGATAAAAGGTGAAC 57.459 39.130 0.00 0.00 0.00 3.18
2021 3840 2.963432 TCCGTCGATAAAAGGTGAACC 58.037 47.619 0.00 0.00 0.00 3.62
2022 3841 2.299582 TCCGTCGATAAAAGGTGAACCA 59.700 45.455 1.62 0.00 38.89 3.67
2023 3842 3.068560 CCGTCGATAAAAGGTGAACCAA 58.931 45.455 1.62 0.00 38.89 3.67
2024 3843 3.499157 CCGTCGATAAAAGGTGAACCAAA 59.501 43.478 1.62 0.00 38.89 3.28
2025 3844 4.155280 CCGTCGATAAAAGGTGAACCAAAT 59.845 41.667 1.62 0.00 38.89 2.32
2026 3845 5.352016 CCGTCGATAAAAGGTGAACCAAATA 59.648 40.000 1.62 0.00 38.89 1.40
2027 3846 6.456449 CCGTCGATAAAAGGTGAACCAAATAG 60.456 42.308 1.62 0.00 38.89 1.73
2028 3847 6.456449 CGTCGATAAAAGGTGAACCAAATAGG 60.456 42.308 1.62 0.00 45.67 2.57
2029 3848 5.883673 TCGATAAAAGGTGAACCAAATAGGG 59.116 40.000 1.62 0.00 43.89 3.53
2030 3849 5.449999 CGATAAAAGGTGAACCAAATAGGGC 60.450 44.000 1.62 0.00 43.89 5.19
2031 3850 2.231716 AAGGTGAACCAAATAGGGCC 57.768 50.000 0.00 0.00 43.89 5.80
2032 3851 1.382914 AGGTGAACCAAATAGGGCCT 58.617 50.000 12.58 12.58 43.89 5.19
2033 3852 2.568979 AGGTGAACCAAATAGGGCCTA 58.431 47.619 17.16 17.16 43.89 3.93
2034 3853 2.923629 AGGTGAACCAAATAGGGCCTAA 59.076 45.455 18.91 0.81 43.89 2.69
2035 3854 3.053619 AGGTGAACCAAATAGGGCCTAAG 60.054 47.826 18.91 10.48 43.89 2.18
2061 3880 9.357652 GTAGATTGTTGCATTGTTGAATAATGT 57.642 29.630 14.64 0.00 37.73 2.71
2144 4171 4.371855 TCTAGGTAGATCAAGTTGCACG 57.628 45.455 0.00 0.00 0.00 5.34
2325 4362 4.470462 TGCACAAAAACATTGTTTGCAAC 58.530 34.783 19.19 8.93 39.16 4.17
2470 4507 1.891919 CGATATGGGCCCGTTGTGG 60.892 63.158 24.93 9.26 37.55 4.17
2625 4663 2.571757 GGATCACTCACACGGCGA 59.428 61.111 16.62 0.00 0.00 5.54
2713 4751 5.317733 AGTCTGAATTACAGTCGGAAGAG 57.682 43.478 0.00 0.00 45.86 2.85
2753 4791 5.248477 TGAGAACAAGTAAAGCAGGATACCT 59.752 40.000 0.00 0.00 37.17 3.08
2782 4820 4.495422 TCGCAAGAGTGAGAGATTTTACC 58.505 43.478 0.00 0.00 45.01 2.85
2891 4930 6.424883 TCCAAGTAGGTTTACCAGACAAAAA 58.575 36.000 1.13 0.00 38.89 1.94
2892 4931 6.319405 TCCAAGTAGGTTTACCAGACAAAAAC 59.681 38.462 1.13 0.00 38.89 2.43
2911 4950 6.657836 AAAACGATAAGTCTAACATTCCCG 57.342 37.500 0.00 0.00 0.00 5.14
2935 4974 1.109323 ACCAAGCAAAGCCAGTGGTC 61.109 55.000 11.74 3.09 34.93 4.02
2937 4976 0.313043 CAAGCAAAGCCAGTGGTCTG 59.687 55.000 11.74 6.95 41.01 3.51
2969 5008 4.270084 GGCCAGCTAAAACAAAAGTTTCAC 59.730 41.667 0.00 0.00 0.00 3.18
3080 5119 6.549061 ACCCTCGTTTAAAAGAATAATTCGC 58.451 36.000 5.35 0.00 34.02 4.70
3303 5379 7.147532 ACACTCCTTTTAAAGTTGAGGTCTACT 60.148 37.037 12.96 0.00 33.54 2.57
3407 5484 1.184970 CGGCCAAATCCACCCTGTTT 61.185 55.000 2.24 0.00 0.00 2.83
3529 5612 6.394345 ACTTTCTGGGAGGATTAGTTTCAT 57.606 37.500 0.00 0.00 0.00 2.57
3533 5616 7.749377 TTCTGGGAGGATTAGTTTCATTAGA 57.251 36.000 0.00 0.00 0.00 2.10
3543 5626 8.175716 GGATTAGTTTCATTAGACTTTGTTCCG 58.824 37.037 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 1.541147 CAAATGCTCCCGCTCAGAAAA 59.459 47.619 0.00 0.00 36.97 2.29
12 13 1.167851 CAAATGCTCCCGCTCAGAAA 58.832 50.000 0.00 0.00 36.97 2.52
13 14 0.324614 TCAAATGCTCCCGCTCAGAA 59.675 50.000 0.00 0.00 36.97 3.02
14 15 0.107993 CTCAAATGCTCCCGCTCAGA 60.108 55.000 0.00 0.00 36.97 3.27
15 16 1.712977 GCTCAAATGCTCCCGCTCAG 61.713 60.000 0.00 0.00 36.97 3.35
16 17 1.746615 GCTCAAATGCTCCCGCTCA 60.747 57.895 0.00 0.00 36.97 4.26
17 18 2.476320 GGCTCAAATGCTCCCGCTC 61.476 63.158 0.00 0.00 36.97 5.03
18 19 2.439156 GGCTCAAATGCTCCCGCT 60.439 61.111 0.00 0.00 36.97 5.52
19 20 3.521796 GGGCTCAAATGCTCCCGC 61.522 66.667 0.00 0.00 0.00 6.13
21 22 2.830370 CCGGGCTCAAATGCTCCC 60.830 66.667 0.00 0.00 35.42 4.30
22 23 2.830370 CCCGGGCTCAAATGCTCC 60.830 66.667 8.08 0.00 0.00 4.70
23 24 3.521796 GCCCGGGCTCAAATGCTC 61.522 66.667 38.76 4.71 38.26 4.26
35 36 2.947938 AAATCCGCATCTGAGCCCGG 62.948 60.000 0.00 0.00 41.97 5.73
36 37 0.249868 TAAATCCGCATCTGAGCCCG 60.250 55.000 0.00 0.00 0.00 6.13
37 38 1.230324 GTAAATCCGCATCTGAGCCC 58.770 55.000 0.00 0.00 0.00 5.19
38 39 0.861837 CGTAAATCCGCATCTGAGCC 59.138 55.000 0.00 0.00 0.00 4.70
39 40 1.523095 GTCGTAAATCCGCATCTGAGC 59.477 52.381 0.00 0.00 0.00 4.26
40 41 3.085443 AGTCGTAAATCCGCATCTGAG 57.915 47.619 0.00 0.00 0.00 3.35
41 42 4.848562 ATAGTCGTAAATCCGCATCTGA 57.151 40.909 0.00 0.00 0.00 3.27
42 43 5.907197 AAATAGTCGTAAATCCGCATCTG 57.093 39.130 0.00 0.00 0.00 2.90
43 44 6.509656 TGTAAATAGTCGTAAATCCGCATCT 58.490 36.000 0.00 0.00 0.00 2.90
44 45 6.615839 GCTGTAAATAGTCGTAAATCCGCATC 60.616 42.308 0.00 0.00 0.00 3.91
45 46 5.176958 GCTGTAAATAGTCGTAAATCCGCAT 59.823 40.000 0.00 0.00 0.00 4.73
46 47 4.505191 GCTGTAAATAGTCGTAAATCCGCA 59.495 41.667 0.00 0.00 0.00 5.69
47 48 4.084693 GGCTGTAAATAGTCGTAAATCCGC 60.085 45.833 0.00 0.00 0.00 5.54
48 49 4.147653 CGGCTGTAAATAGTCGTAAATCCG 59.852 45.833 0.00 0.00 40.67 4.18
49 50 5.571778 CGGCTGTAAATAGTCGTAAATCC 57.428 43.478 0.00 0.00 40.67 3.01
57 58 8.813643 ATTTACTATGACGGCTGTAAATAGTC 57.186 34.615 25.82 4.47 41.13 2.59
58 59 9.042008 CAATTTACTATGACGGCTGTAAATAGT 57.958 33.333 25.55 25.55 41.68 2.12
59 60 9.256477 TCAATTTACTATGACGGCTGTAAATAG 57.744 33.333 19.75 19.45 41.68 1.73
60 61 9.602568 TTCAATTTACTATGACGGCTGTAAATA 57.397 29.630 19.75 0.00 41.68 1.40
61 62 8.395633 GTTCAATTTACTATGACGGCTGTAAAT 58.604 33.333 16.23 16.23 43.25 1.40
62 63 7.604927 AGTTCAATTTACTATGACGGCTGTAAA 59.395 33.333 13.90 13.90 38.62 2.01
63 64 7.101054 AGTTCAATTTACTATGACGGCTGTAA 58.899 34.615 0.00 0.00 0.00 2.41
64 65 6.636705 AGTTCAATTTACTATGACGGCTGTA 58.363 36.000 0.00 0.00 0.00 2.74
65 66 5.488341 AGTTCAATTTACTATGACGGCTGT 58.512 37.500 0.00 0.00 0.00 4.40
66 67 7.534085 TTAGTTCAATTTACTATGACGGCTG 57.466 36.000 0.00 0.00 0.00 4.85
67 68 8.732746 AATTAGTTCAATTTACTATGACGGCT 57.267 30.769 0.00 0.00 32.74 5.52
68 69 9.221775 CAAATTAGTTCAATTTACTATGACGGC 57.778 33.333 0.00 0.00 43.51 5.68
132 133 6.554334 AAATATATGCGCCGAAATACAAGT 57.446 33.333 4.18 0.00 0.00 3.16
205 1680 4.970711 TGTTACCAGAAACGAATACCCAA 58.029 39.130 0.00 0.00 31.76 4.12
208 1683 7.325097 CACATTTTGTTACCAGAAACGAATACC 59.675 37.037 0.00 0.00 33.73 2.73
252 1728 2.238521 CTAGCTGAGGGGAGACAGATC 58.761 57.143 0.00 0.00 36.38 2.75
430 2023 9.584008 ACTCCCTTCGTTCTGAACTATAATATA 57.416 33.333 17.60 0.00 31.87 0.86
439 2127 3.938289 AGTACTCCCTTCGTTCTGAAC 57.062 47.619 10.48 10.48 31.87 3.18
442 2130 3.018149 AGCTAGTACTCCCTTCGTTCTG 58.982 50.000 0.00 0.00 0.00 3.02
443 2131 3.018149 CAGCTAGTACTCCCTTCGTTCT 58.982 50.000 0.00 0.00 0.00 3.01
448 2136 3.090037 TGTGACAGCTAGTACTCCCTTC 58.910 50.000 0.00 0.00 0.00 3.46
461 2149 1.789464 CGAAGAGACAACTGTGACAGC 59.211 52.381 13.37 0.00 34.37 4.40
475 2190 2.738846 CACAAACTCCATGTCCGAAGAG 59.261 50.000 0.00 0.00 0.00 2.85
600 2350 7.898725 AAATATCATTTCATCGCGAAACTTC 57.101 32.000 15.24 0.00 46.22 3.01
603 2353 8.713765 ACATAAATATCATTTCATCGCGAAAC 57.286 30.769 15.24 0.00 46.22 2.78
735 2531 6.272318 CCAACAGAAAACAATGAACAGCTAA 58.728 36.000 0.00 0.00 0.00 3.09
737 2533 4.685924 CCAACAGAAAACAATGAACAGCT 58.314 39.130 0.00 0.00 0.00 4.24
859 2659 1.153289 CCCTTGGGCTGATCGTCTG 60.153 63.158 0.00 0.00 0.00 3.51
862 2662 2.370445 CCTCCCTTGGGCTGATCGT 61.370 63.158 0.00 0.00 0.00 3.73
909 2710 3.722147 TCAGCGGCTGATTATTCTTCTC 58.278 45.455 27.76 0.00 35.39 2.87
995 2796 1.402852 GGGAAAGCTCGTCCATTTTGC 60.403 52.381 16.19 0.00 36.83 3.68
1071 2872 2.481289 TTGATTGATGGCACGTACCA 57.519 45.000 10.61 10.61 45.82 3.25
1078 2879 6.099125 AGGATTGAATTGATTGATTGATGGCA 59.901 34.615 0.00 0.00 0.00 4.92
1082 2883 7.232941 GGAGGAGGATTGAATTGATTGATTGAT 59.767 37.037 0.00 0.00 0.00 2.57
1096 2897 1.217942 TCGGATCAGGAGGAGGATTGA 59.782 52.381 0.00 0.00 0.00 2.57
1144 2961 5.444481 CCGTCGCAAAAATCAAAATCAATCC 60.444 40.000 0.00 0.00 0.00 3.01
1746 3565 1.109323 ACAGCTGAACCAAACAGGGC 61.109 55.000 23.35 0.00 43.89 5.19
1747 3566 0.670162 CACAGCTGAACCAAACAGGG 59.330 55.000 23.35 0.00 43.89 4.45
1748 3567 0.670162 CCACAGCTGAACCAAACAGG 59.330 55.000 23.35 3.86 45.67 4.00
1749 3568 1.679139 TCCACAGCTGAACCAAACAG 58.321 50.000 23.35 0.00 38.27 3.16
1750 3569 2.363306 ATCCACAGCTGAACCAAACA 57.637 45.000 23.35 0.00 0.00 2.83
1751 3570 3.319122 AGAAATCCACAGCTGAACCAAAC 59.681 43.478 23.35 6.86 0.00 2.93
1752 3571 3.565307 AGAAATCCACAGCTGAACCAAA 58.435 40.909 23.35 0.00 0.00 3.28
1753 3572 3.228188 AGAAATCCACAGCTGAACCAA 57.772 42.857 23.35 0.87 0.00 3.67
1755 3574 5.705609 TTTTAGAAATCCACAGCTGAACC 57.294 39.130 23.35 1.98 0.00 3.62
1756 3575 7.025963 CAGATTTTAGAAATCCACAGCTGAAC 58.974 38.462 23.35 3.31 0.00 3.18
1757 3576 6.349611 GCAGATTTTAGAAATCCACAGCTGAA 60.350 38.462 23.35 5.64 0.00 3.02
1759 3578 5.125097 AGCAGATTTTAGAAATCCACAGCTG 59.875 40.000 13.48 13.48 0.00 4.24
1760 3579 5.125097 CAGCAGATTTTAGAAATCCACAGCT 59.875 40.000 9.19 10.36 0.00 4.24
1761 3580 5.105997 ACAGCAGATTTTAGAAATCCACAGC 60.106 40.000 9.19 8.75 0.00 4.40
1763 3582 5.183713 CCACAGCAGATTTTAGAAATCCACA 59.816 40.000 9.19 0.00 0.00 4.17
1764 3583 5.415701 TCCACAGCAGATTTTAGAAATCCAC 59.584 40.000 9.19 3.44 0.00 4.02
1766 3585 6.515272 TTCCACAGCAGATTTTAGAAATCC 57.485 37.500 9.19 0.00 0.00 3.01
1767 3586 8.816640 TTTTTCCACAGCAGATTTTAGAAATC 57.183 30.769 5.48 5.48 0.00 2.17
1770 3589 8.028938 GCTATTTTTCCACAGCAGATTTTAGAA 58.971 33.333 0.00 0.00 34.13 2.10
1771 3590 7.394359 AGCTATTTTTCCACAGCAGATTTTAGA 59.606 33.333 0.00 0.00 36.47 2.10
1772 3591 7.487189 CAGCTATTTTTCCACAGCAGATTTTAG 59.513 37.037 0.00 0.00 36.47 1.85
1773 3592 7.039784 ACAGCTATTTTTCCACAGCAGATTTTA 60.040 33.333 0.00 0.00 36.47 1.52
1775 3594 5.244626 ACAGCTATTTTTCCACAGCAGATTT 59.755 36.000 0.00 0.00 36.47 2.17
1776 3595 4.768968 ACAGCTATTTTTCCACAGCAGATT 59.231 37.500 0.00 0.00 36.47 2.40
1777 3596 4.157289 CACAGCTATTTTTCCACAGCAGAT 59.843 41.667 0.00 0.00 36.47 2.90
1778 3597 3.503363 CACAGCTATTTTTCCACAGCAGA 59.497 43.478 0.00 0.00 36.47 4.26
1779 3598 3.503363 TCACAGCTATTTTTCCACAGCAG 59.497 43.478 0.00 0.00 36.47 4.24
1780 3599 3.485394 TCACAGCTATTTTTCCACAGCA 58.515 40.909 0.00 0.00 36.47 4.41
1802 3621 9.143155 ACCTACATCTTTTCCACATTAGTTTTT 57.857 29.630 0.00 0.00 0.00 1.94
1803 3622 8.706322 ACCTACATCTTTTCCACATTAGTTTT 57.294 30.769 0.00 0.00 0.00 2.43
1804 3623 7.942341 TGACCTACATCTTTTCCACATTAGTTT 59.058 33.333 0.00 0.00 0.00 2.66
1806 3625 7.016153 TGACCTACATCTTTTCCACATTAGT 57.984 36.000 0.00 0.00 0.00 2.24
1807 3626 8.511604 AATGACCTACATCTTTTCCACATTAG 57.488 34.615 0.00 0.00 38.38 1.73
1809 3628 7.451255 TCAAATGACCTACATCTTTTCCACATT 59.549 33.333 0.00 0.00 38.38 2.71
1811 3630 6.303054 TCAAATGACCTACATCTTTTCCACA 58.697 36.000 0.00 0.00 38.38 4.17
1812 3631 6.817765 TCAAATGACCTACATCTTTTCCAC 57.182 37.500 0.00 0.00 38.38 4.02
1813 3632 7.831691 TTTCAAATGACCTACATCTTTTCCA 57.168 32.000 0.00 0.00 38.38 3.53
1814 3633 8.978539 GTTTTTCAAATGACCTACATCTTTTCC 58.021 33.333 0.00 0.00 38.38 3.13
1815 3634 9.750125 AGTTTTTCAAATGACCTACATCTTTTC 57.250 29.630 0.00 0.00 38.38 2.29
1819 3638 7.885399 AGCTAGTTTTTCAAATGACCTACATCT 59.115 33.333 0.00 0.00 38.38 2.90
1820 3639 7.965107 CAGCTAGTTTTTCAAATGACCTACATC 59.035 37.037 0.00 0.00 38.38 3.06
1821 3640 7.665559 TCAGCTAGTTTTTCAAATGACCTACAT 59.334 33.333 0.00 0.00 41.45 2.29
1822 3641 6.995686 TCAGCTAGTTTTTCAAATGACCTACA 59.004 34.615 0.00 0.00 0.00 2.74
1823 3642 7.435068 TCAGCTAGTTTTTCAAATGACCTAC 57.565 36.000 0.00 0.00 0.00 3.18
1824 3643 9.162764 GTATCAGCTAGTTTTTCAAATGACCTA 57.837 33.333 0.00 0.00 0.00 3.08
1825 3644 7.665559 TGTATCAGCTAGTTTTTCAAATGACCT 59.334 33.333 0.00 0.00 0.00 3.85
1826 3645 7.816640 TGTATCAGCTAGTTTTTCAAATGACC 58.183 34.615 0.00 0.00 0.00 4.02
1827 3646 9.846248 ATTGTATCAGCTAGTTTTTCAAATGAC 57.154 29.630 0.00 0.00 0.00 3.06
1855 3674 2.611722 GCTGCGGGCCAAAATCTAAAAA 60.612 45.455 4.39 0.00 34.27 1.94
1856 3675 1.067213 GCTGCGGGCCAAAATCTAAAA 60.067 47.619 4.39 0.00 34.27 1.52
1857 3676 0.530288 GCTGCGGGCCAAAATCTAAA 59.470 50.000 4.39 0.00 34.27 1.85
1858 3677 0.610509 TGCTGCGGGCCAAAATCTAA 60.611 50.000 4.39 0.00 40.92 2.10
1859 3678 1.001517 TGCTGCGGGCCAAAATCTA 60.002 52.632 4.39 0.00 40.92 1.98
1860 3679 2.283101 TGCTGCGGGCCAAAATCT 60.283 55.556 4.39 0.00 40.92 2.40
1861 3680 1.876497 TTCTGCTGCGGGCCAAAATC 61.876 55.000 4.39 0.00 40.92 2.17
1862 3681 1.259840 ATTCTGCTGCGGGCCAAAAT 61.260 50.000 4.39 0.00 40.92 1.82
1863 3682 1.876497 GATTCTGCTGCGGGCCAAAA 61.876 55.000 4.39 0.00 40.92 2.44
1864 3683 2.283101 ATTCTGCTGCGGGCCAAA 60.283 55.556 4.39 0.00 40.92 3.28
1865 3684 2.751436 GATTCTGCTGCGGGCCAA 60.751 61.111 4.39 0.00 40.92 4.52
1866 3685 3.982316 CTGATTCTGCTGCGGGCCA 62.982 63.158 4.39 3.71 40.92 5.36
1867 3686 2.955022 ATCTGATTCTGCTGCGGGCC 62.955 60.000 8.89 0.00 40.92 5.80
1868 3687 1.099879 AATCTGATTCTGCTGCGGGC 61.100 55.000 8.89 0.00 42.22 6.13
1869 3688 1.386533 AAATCTGATTCTGCTGCGGG 58.613 50.000 8.89 0.00 0.00 6.13
1870 3689 2.421073 TCAAAATCTGATTCTGCTGCGG 59.579 45.455 2.92 0.95 0.00 5.69
1871 3690 3.752412 TCAAAATCTGATTCTGCTGCG 57.248 42.857 2.92 0.00 0.00 5.18
1872 3691 5.163982 GCTTTTCAAAATCTGATTCTGCTGC 60.164 40.000 2.92 0.00 32.78 5.25
1873 3692 5.924254 TGCTTTTCAAAATCTGATTCTGCTG 59.076 36.000 2.92 0.27 32.78 4.41
1874 3693 5.924825 GTGCTTTTCAAAATCTGATTCTGCT 59.075 36.000 2.92 0.00 32.78 4.24
1875 3694 5.164119 CGTGCTTTTCAAAATCTGATTCTGC 60.164 40.000 2.92 2.31 32.78 4.26
1876 3695 5.916883 ACGTGCTTTTCAAAATCTGATTCTG 59.083 36.000 2.92 0.00 32.78 3.02
1877 3696 6.076981 ACGTGCTTTTCAAAATCTGATTCT 57.923 33.333 2.92 0.00 32.78 2.40
1878 3697 5.343325 GGACGTGCTTTTCAAAATCTGATTC 59.657 40.000 2.92 0.00 32.78 2.52
1879 3698 5.010012 AGGACGTGCTTTTCAAAATCTGATT 59.990 36.000 2.68 0.00 32.78 2.57
1880 3699 4.520492 AGGACGTGCTTTTCAAAATCTGAT 59.480 37.500 2.68 0.00 32.78 2.90
1881 3700 3.882888 AGGACGTGCTTTTCAAAATCTGA 59.117 39.130 2.68 0.00 0.00 3.27
1882 3701 3.976942 CAGGACGTGCTTTTCAAAATCTG 59.023 43.478 6.93 0.00 0.00 2.90
1883 3702 3.004734 CCAGGACGTGCTTTTCAAAATCT 59.995 43.478 6.93 0.00 0.00 2.40
1884 3703 3.308530 CCAGGACGTGCTTTTCAAAATC 58.691 45.455 6.93 0.00 0.00 2.17
1885 3704 2.035832 CCCAGGACGTGCTTTTCAAAAT 59.964 45.455 6.93 0.00 0.00 1.82
1886 3705 1.407258 CCCAGGACGTGCTTTTCAAAA 59.593 47.619 6.93 0.00 0.00 2.44
1887 3706 1.028905 CCCAGGACGTGCTTTTCAAA 58.971 50.000 6.93 0.00 0.00 2.69
1888 3707 1.452145 GCCCAGGACGTGCTTTTCAA 61.452 55.000 6.93 0.00 0.00 2.69
1889 3708 1.896660 GCCCAGGACGTGCTTTTCA 60.897 57.895 6.93 0.00 0.00 2.69
1890 3709 1.600916 AGCCCAGGACGTGCTTTTC 60.601 57.895 6.93 0.00 29.17 2.29
1891 3710 1.898574 CAGCCCAGGACGTGCTTTT 60.899 57.895 6.93 0.00 31.77 2.27
1892 3711 2.281761 CAGCCCAGGACGTGCTTT 60.282 61.111 6.93 0.00 31.77 3.51
1896 3715 2.743928 GAAGCAGCCCAGGACGTG 60.744 66.667 0.00 0.00 0.00 4.49
1897 3716 4.021925 GGAAGCAGCCCAGGACGT 62.022 66.667 0.00 0.00 0.00 4.34
1910 3729 3.923017 AATCTGAACCAAAAGCGGAAG 57.077 42.857 0.00 0.00 0.00 3.46
1911 3730 4.367450 CAAAATCTGAACCAAAAGCGGAA 58.633 39.130 0.00 0.00 0.00 4.30
1912 3731 3.243704 CCAAAATCTGAACCAAAAGCGGA 60.244 43.478 0.00 0.00 0.00 5.54
1913 3732 3.059166 CCAAAATCTGAACCAAAAGCGG 58.941 45.455 0.00 0.00 0.00 5.52
1914 3733 2.476241 GCCAAAATCTGAACCAAAAGCG 59.524 45.455 0.00 0.00 0.00 4.68
1915 3734 3.465871 TGCCAAAATCTGAACCAAAAGC 58.534 40.909 0.00 0.00 0.00 3.51
1916 3735 3.495753 GCTGCCAAAATCTGAACCAAAAG 59.504 43.478 0.00 0.00 0.00 2.27
1917 3736 3.465871 GCTGCCAAAATCTGAACCAAAA 58.534 40.909 0.00 0.00 0.00 2.44
1918 3737 2.545532 CGCTGCCAAAATCTGAACCAAA 60.546 45.455 0.00 0.00 0.00 3.28
1919 3738 1.000385 CGCTGCCAAAATCTGAACCAA 60.000 47.619 0.00 0.00 0.00 3.67
1920 3739 0.597568 CGCTGCCAAAATCTGAACCA 59.402 50.000 0.00 0.00 0.00 3.67
1921 3740 0.109132 CCGCTGCCAAAATCTGAACC 60.109 55.000 0.00 0.00 0.00 3.62
1922 3741 0.881118 TCCGCTGCCAAAATCTGAAC 59.119 50.000 0.00 0.00 0.00 3.18
1923 3742 1.838112 ATCCGCTGCCAAAATCTGAA 58.162 45.000 0.00 0.00 0.00 3.02
1924 3743 1.838112 AATCCGCTGCCAAAATCTGA 58.162 45.000 0.00 0.00 0.00 3.27
1925 3744 2.165030 AGAAATCCGCTGCCAAAATCTG 59.835 45.455 0.00 0.00 0.00 2.90
1926 3745 2.165030 CAGAAATCCGCTGCCAAAATCT 59.835 45.455 0.00 0.00 0.00 2.40
1927 3746 2.164219 TCAGAAATCCGCTGCCAAAATC 59.836 45.455 0.00 0.00 33.45 2.17
1928 3747 2.170166 TCAGAAATCCGCTGCCAAAAT 58.830 42.857 0.00 0.00 33.45 1.82
1929 3748 1.614996 TCAGAAATCCGCTGCCAAAA 58.385 45.000 0.00 0.00 33.45 2.44
1930 3749 1.614996 TTCAGAAATCCGCTGCCAAA 58.385 45.000 0.00 0.00 33.45 3.28
1931 3750 1.614996 TTTCAGAAATCCGCTGCCAA 58.385 45.000 0.00 0.00 33.45 4.52
1932 3751 1.745087 GATTTCAGAAATCCGCTGCCA 59.255 47.619 21.23 0.00 41.08 4.92
1933 3752 1.268234 CGATTTCAGAAATCCGCTGCC 60.268 52.381 24.39 4.78 43.39 4.85
1934 3753 1.268234 CCGATTTCAGAAATCCGCTGC 60.268 52.381 24.39 5.39 43.39 5.25
1935 3754 2.279741 TCCGATTTCAGAAATCCGCTG 58.720 47.619 24.39 13.50 43.39 5.18
1936 3755 2.691409 TCCGATTTCAGAAATCCGCT 57.309 45.000 24.39 0.00 43.39 5.52
1937 3756 3.971032 AATCCGATTTCAGAAATCCGC 57.029 42.857 24.39 6.64 43.39 5.54
1938 3757 4.500477 GCAAAATCCGATTTCAGAAATCCG 59.500 41.667 24.39 19.46 43.39 4.18
1939 3758 5.517770 CAGCAAAATCCGATTTCAGAAATCC 59.482 40.000 24.39 11.60 43.39 3.01
1940 3759 5.517770 CCAGCAAAATCCGATTTCAGAAATC 59.482 40.000 21.73 21.73 42.99 2.17
1941 3760 5.185635 TCCAGCAAAATCCGATTTCAGAAAT 59.814 36.000 8.20 8.20 0.00 2.17
1942 3761 4.522405 TCCAGCAAAATCCGATTTCAGAAA 59.478 37.500 6.82 0.00 0.00 2.52
1943 3762 4.078537 TCCAGCAAAATCCGATTTCAGAA 58.921 39.130 6.82 0.00 0.00 3.02
1944 3763 3.684908 TCCAGCAAAATCCGATTTCAGA 58.315 40.909 6.82 0.00 0.00 3.27
1945 3764 4.644103 ATCCAGCAAAATCCGATTTCAG 57.356 40.909 6.82 4.71 0.00 3.02
1946 3765 4.462132 TGAATCCAGCAAAATCCGATTTCA 59.538 37.500 6.82 0.00 0.00 2.69
1947 3766 4.800471 GTGAATCCAGCAAAATCCGATTTC 59.200 41.667 6.82 0.00 0.00 2.17
1948 3767 4.381932 GGTGAATCCAGCAAAATCCGATTT 60.382 41.667 0.17 0.17 40.34 2.17
1949 3768 3.131046 GGTGAATCCAGCAAAATCCGATT 59.869 43.478 0.00 0.00 40.34 3.34
1950 3769 2.689983 GGTGAATCCAGCAAAATCCGAT 59.310 45.455 0.00 0.00 40.34 4.18
1951 3770 2.091541 GGTGAATCCAGCAAAATCCGA 58.908 47.619 0.00 0.00 40.34 4.55
1952 3771 1.134946 GGGTGAATCCAGCAAAATCCG 59.865 52.381 0.00 0.00 42.28 4.18
1953 3772 2.460669 AGGGTGAATCCAGCAAAATCC 58.539 47.619 0.00 0.00 42.28 3.01
1954 3773 4.248058 CAAAGGGTGAATCCAGCAAAATC 58.752 43.478 0.00 0.00 42.28 2.17
1955 3774 3.008266 CCAAAGGGTGAATCCAGCAAAAT 59.992 43.478 0.00 0.00 42.28 1.82
1956 3775 2.368221 CCAAAGGGTGAATCCAGCAAAA 59.632 45.455 0.00 0.00 42.28 2.44
1957 3776 1.969923 CCAAAGGGTGAATCCAGCAAA 59.030 47.619 0.00 0.00 42.28 3.68
1958 3777 1.631405 CCAAAGGGTGAATCCAGCAA 58.369 50.000 0.00 0.00 42.28 3.91
1959 3778 3.362040 CCAAAGGGTGAATCCAGCA 57.638 52.632 0.00 0.00 42.28 4.41
1970 3789 0.318955 CGCAGCAGAAAACCAAAGGG 60.319 55.000 0.00 0.00 41.29 3.95
1971 3790 3.184094 CGCAGCAGAAAACCAAAGG 57.816 52.632 0.00 0.00 0.00 3.11
1991 3810 0.596600 TATCGACGGATTTCGCTGCC 60.597 55.000 0.00 0.00 43.89 4.85
1992 3811 1.205657 TTATCGACGGATTTCGCTGC 58.794 50.000 0.00 0.00 43.89 5.25
1993 3812 3.302480 CCTTTTATCGACGGATTTCGCTG 60.302 47.826 0.00 0.00 43.89 5.18
1994 3813 2.864343 CCTTTTATCGACGGATTTCGCT 59.136 45.455 0.00 0.00 43.89 4.93
1995 3814 2.606272 ACCTTTTATCGACGGATTTCGC 59.394 45.455 0.00 0.00 43.89 4.70
1996 3815 3.861113 TCACCTTTTATCGACGGATTTCG 59.139 43.478 0.00 0.00 45.88 3.46
1997 3816 5.446875 GGTTCACCTTTTATCGACGGATTTC 60.447 44.000 0.00 0.00 34.00 2.17
1998 3817 4.393990 GGTTCACCTTTTATCGACGGATTT 59.606 41.667 0.00 0.00 34.00 2.17
1999 3818 3.937079 GGTTCACCTTTTATCGACGGATT 59.063 43.478 0.00 0.00 34.00 3.01
2000 3819 3.055675 TGGTTCACCTTTTATCGACGGAT 60.056 43.478 0.00 0.00 36.82 4.18
2001 3820 2.299582 TGGTTCACCTTTTATCGACGGA 59.700 45.455 0.00 0.00 36.82 4.69
2002 3821 2.690786 TGGTTCACCTTTTATCGACGG 58.309 47.619 0.00 0.00 36.82 4.79
2003 3822 4.735662 TTTGGTTCACCTTTTATCGACG 57.264 40.909 0.00 0.00 36.82 5.12
2004 3823 6.183360 CCCTATTTGGTTCACCTTTTATCGAC 60.183 42.308 0.00 0.00 36.82 4.20
2005 3824 5.883673 CCCTATTTGGTTCACCTTTTATCGA 59.116 40.000 0.00 0.00 36.82 3.59
2006 3825 5.449999 GCCCTATTTGGTTCACCTTTTATCG 60.450 44.000 0.00 0.00 36.82 2.92
2007 3826 5.163447 GGCCCTATTTGGTTCACCTTTTATC 60.163 44.000 0.00 0.00 36.82 1.75
2008 3827 4.714802 GGCCCTATTTGGTTCACCTTTTAT 59.285 41.667 0.00 0.00 36.82 1.40
2009 3828 4.090819 GGCCCTATTTGGTTCACCTTTTA 58.909 43.478 0.00 0.00 36.82 1.52
2010 3829 2.903784 GGCCCTATTTGGTTCACCTTTT 59.096 45.455 0.00 0.00 36.82 2.27
2011 3830 2.111792 AGGCCCTATTTGGTTCACCTTT 59.888 45.455 0.00 0.00 36.82 3.11
2012 3831 1.716503 AGGCCCTATTTGGTTCACCTT 59.283 47.619 0.00 0.00 36.82 3.50
2013 3832 1.382914 AGGCCCTATTTGGTTCACCT 58.617 50.000 0.00 0.00 36.82 4.00
2014 3833 3.288092 CTTAGGCCCTATTTGGTTCACC 58.712 50.000 0.00 0.00 0.00 4.02
2015 3834 3.964411 ACTTAGGCCCTATTTGGTTCAC 58.036 45.455 0.00 0.00 0.00 3.18
2016 3835 5.034200 TCTACTTAGGCCCTATTTGGTTCA 58.966 41.667 0.00 0.00 0.00 3.18
2017 3836 5.625568 TCTACTTAGGCCCTATTTGGTTC 57.374 43.478 0.00 0.00 0.00 3.62
2018 3837 6.069029 ACAATCTACTTAGGCCCTATTTGGTT 60.069 38.462 0.00 0.00 0.00 3.67
2019 3838 5.432060 ACAATCTACTTAGGCCCTATTTGGT 59.568 40.000 0.00 0.00 0.00 3.67
2020 3839 5.941788 ACAATCTACTTAGGCCCTATTTGG 58.058 41.667 0.00 0.00 0.00 3.28
2021 3840 6.238759 GCAACAATCTACTTAGGCCCTATTTG 60.239 42.308 0.00 0.00 0.00 2.32
2022 3841 5.828328 GCAACAATCTACTTAGGCCCTATTT 59.172 40.000 0.00 0.00 0.00 1.40
2023 3842 5.104109 TGCAACAATCTACTTAGGCCCTATT 60.104 40.000 0.00 0.00 0.00 1.73
2024 3843 4.412199 TGCAACAATCTACTTAGGCCCTAT 59.588 41.667 0.00 0.00 0.00 2.57
2025 3844 3.778075 TGCAACAATCTACTTAGGCCCTA 59.222 43.478 0.00 0.00 0.00 3.53
2026 3845 2.576191 TGCAACAATCTACTTAGGCCCT 59.424 45.455 0.00 0.00 0.00 5.19
2027 3846 2.999331 TGCAACAATCTACTTAGGCCC 58.001 47.619 0.00 0.00 0.00 5.80
2028 3847 4.399303 ACAATGCAACAATCTACTTAGGCC 59.601 41.667 0.00 0.00 0.00 5.19
2029 3848 5.567138 ACAATGCAACAATCTACTTAGGC 57.433 39.130 0.00 0.00 0.00 3.93
2030 3849 7.144722 TCAACAATGCAACAATCTACTTAGG 57.855 36.000 0.00 0.00 0.00 2.69
2034 3853 9.577110 CATTATTCAACAATGCAACAATCTACT 57.423 29.630 0.00 0.00 0.00 2.57
2035 3854 9.357652 ACATTATTCAACAATGCAACAATCTAC 57.642 29.630 0.00 0.00 36.96 2.59
2058 3877 7.738437 AACTGGGAAATATCAAATCCAACAT 57.262 32.000 0.00 0.00 34.82 2.71
2220 4248 1.779025 CTACCGCACATGGATGCTGC 61.779 60.000 6.72 1.33 43.80 5.25
2325 4362 0.823460 ACAACCAAGCACACCCAAAG 59.177 50.000 0.00 0.00 0.00 2.77
2384 4421 9.674824 CTTATCCAACAGAAATCAGATAATTGC 57.325 33.333 0.00 0.00 0.00 3.56
2470 4507 2.290641 ACTCAGTTGGATTTCGTTGCAC 59.709 45.455 0.00 0.00 0.00 4.57
2512 4550 3.518590 CCGTTAGACCGAGCTTACAATT 58.481 45.455 0.00 0.00 0.00 2.32
2513 4551 2.737679 GCCGTTAGACCGAGCTTACAAT 60.738 50.000 0.00 0.00 0.00 2.71
2514 4552 1.403249 GCCGTTAGACCGAGCTTACAA 60.403 52.381 0.00 0.00 0.00 2.41
2515 4553 0.171903 GCCGTTAGACCGAGCTTACA 59.828 55.000 0.00 0.00 0.00 2.41
2667 4705 8.360390 ACTATAAAAGCAAAAGAAAACCCTGAG 58.640 33.333 0.00 0.00 0.00 3.35
2705 4743 2.030540 CACTCGTTTACACCTCTTCCGA 60.031 50.000 0.00 0.00 0.00 4.55
2713 4751 3.637998 TCTCACTCACTCGTTTACACC 57.362 47.619 0.00 0.00 0.00 4.16
2753 4791 1.539827 TCTCACTCTTGCGAATCACGA 59.460 47.619 0.00 0.00 45.77 4.35
2891 4930 3.492137 GCCGGGAATGTTAGACTTATCGT 60.492 47.826 2.18 0.00 0.00 3.73
2892 4931 3.057734 GCCGGGAATGTTAGACTTATCG 58.942 50.000 2.18 0.00 0.00 2.92
2929 4968 0.317479 GCCGTGACTAACAGACCACT 59.683 55.000 0.00 0.00 0.00 4.00
2935 4974 0.530744 TAGCTGGCCGTGACTAACAG 59.469 55.000 0.00 0.00 0.00 3.16
2937 4976 2.088950 TTTAGCTGGCCGTGACTAAC 57.911 50.000 0.00 0.00 0.00 2.34
2988 5027 8.618240 TTTATATTCCTTGAGGAGGTTCTACA 57.382 34.615 0.00 0.00 46.36 2.74
3105 5144 0.108615 CAACCGTTTTGCACCCACAA 60.109 50.000 0.00 0.00 0.00 3.33
3157 5196 6.153924 AGGTCAACATCTATAAAGGATCCCT 58.846 40.000 8.55 0.00 33.87 4.20
3280 5356 6.874664 GGAGTAGACCTCAACTTTAAAAGGAG 59.125 42.308 10.08 6.96 42.40 3.69
3303 5379 1.203428 TCCTTCCATGGACAAGAGGGA 60.203 52.381 24.16 16.75 33.76 4.20
3393 5470 2.539302 CCCATGAAACAGGGTGGATTT 58.461 47.619 0.00 0.00 40.34 2.17
3510 5593 6.903534 AGTCTAATGAAACTAATCCTCCCAGA 59.096 38.462 0.00 0.00 0.00 3.86
3529 5612 4.020839 CCCCTAGAACGGAACAAAGTCTAA 60.021 45.833 0.00 0.00 0.00 2.10
3533 5616 1.350019 CCCCCTAGAACGGAACAAAGT 59.650 52.381 0.00 0.00 0.00 2.66
3605 5688 3.308832 GGGTTAGTGGGGATTGAATGACA 60.309 47.826 0.00 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.