Multiple sequence alignment - TraesCS5A01G139300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G139300 chr5A 100.000 4713 0 0 1 4713 311677998 311673286 0.000000e+00 8704.0
1 TraesCS5A01G139300 chr5D 95.633 3549 114 19 491 4018 241847775 241844247 0.000000e+00 5657.0
2 TraesCS5A01G139300 chr5D 98.660 597 8 0 4117 4713 241844079 241843483 0.000000e+00 1059.0
3 TraesCS5A01G139300 chr5D 100.000 43 0 0 4076 4118 241844245 241844203 3.910000e-11 80.5
4 TraesCS5A01G139300 chr5B 93.023 3526 191 22 493 3984 256617643 256614139 0.000000e+00 5097.0
5 TraesCS5A01G139300 chr5B 89.389 622 34 10 4087 4708 256614093 256613504 0.000000e+00 754.0
6 TraesCS5A01G139300 chr5B 87.368 95 7 2 4000 4090 45538263 45538356 2.320000e-18 104.0
7 TraesCS5A01G139300 chr3A 94.182 275 15 1 218 491 614349575 614349301 7.290000e-113 418.0
8 TraesCS5A01G139300 chr3A 91.228 285 23 2 212 495 715390064 715390347 2.060000e-103 387.0
9 TraesCS5A01G139300 chr3A 82.857 140 23 1 1873 2012 244351948 244352086 1.780000e-24 124.0
10 TraesCS5A01G139300 chr7A 93.525 278 17 1 215 491 696536300 696536577 3.390000e-111 412.0
11 TraesCS5A01G139300 chr7A 93.455 275 17 1 218 491 59221639 59221913 1.580000e-109 407.0
12 TraesCS5A01G139300 chr7A 92.446 278 21 0 218 495 621407028 621407305 9.500000e-107 398.0
13 TraesCS5A01G139300 chr4A 93.431 274 18 0 218 491 629490594 629490321 1.580000e-109 407.0
14 TraesCS5A01G139300 chr2A 93.455 275 17 1 218 491 513290262 513289988 1.580000e-109 407.0
15 TraesCS5A01G139300 chr1A 93.091 275 18 1 218 491 398664120 398664394 7.350000e-108 401.0
16 TraesCS5A01G139300 chr6A 92.727 275 19 1 218 491 557412217 557412491 3.420000e-106 396.0
17 TraesCS5A01G139300 chr7B 89.524 105 9 1 3990 4094 566635060 566634958 1.060000e-26 132.0
18 TraesCS5A01G139300 chr3D 83.088 136 23 0 1873 2008 185236311 185236446 1.780000e-24 124.0
19 TraesCS5A01G139300 chr3B 82.857 140 23 1 1873 2012 264009181 264009319 1.780000e-24 124.0
20 TraesCS5A01G139300 chr3B 86.869 99 8 1 4002 4095 70273684 70273586 6.450000e-19 106.0
21 TraesCS5A01G139300 chr3B 86.869 99 5 3 3998 4089 450376546 450376643 2.320000e-18 104.0
22 TraesCS5A01G139300 chr6B 90.909 88 6 1 4003 4088 51734973 51735060 2.980000e-22 117.0
23 TraesCS5A01G139300 chr6B 90.000 90 5 1 4007 4092 609386085 609385996 3.850000e-21 113.0
24 TraesCS5A01G139300 chr2D 88.421 95 5 2 4000 4089 382455932 382456025 4.990000e-20 110.0
25 TraesCS5A01G139300 chr2D 87.500 96 7 1 4011 4101 619480794 619480889 6.450000e-19 106.0
26 TraesCS5A01G139300 chr1B 83.784 111 10 3 3988 4092 675980535 675980643 1.080000e-16 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G139300 chr5A 311673286 311677998 4712 True 8704.0 8704 100.000000 1 4713 1 chr5A.!!$R1 4712
1 TraesCS5A01G139300 chr5D 241843483 241847775 4292 True 2265.5 5657 98.097667 491 4713 3 chr5D.!!$R1 4222
2 TraesCS5A01G139300 chr5B 256613504 256617643 4139 True 2925.5 5097 91.206000 493 4708 2 chr5B.!!$R1 4215

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
220 221 0.464036 TCCATACACGTCCATGAGGC 59.536 55.000 7.35 0.0 33.74 4.70 F
1555 1572 0.036010 AGAATGGCCGGAGTCAACAG 60.036 55.000 5.05 0.0 0.00 3.16 F
1654 1671 0.108585 ACCAGGTGCAACACTGTAGG 59.891 55.000 3.64 0.0 39.98 3.18 F
1785 1802 0.905357 CTGATGAACGGAACCTCCCT 59.095 55.000 0.00 0.0 31.13 4.20 F
2399 2429 2.927028 AGGTTACCGAACAAGCAAACT 58.073 42.857 0.00 0.0 37.29 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1557 1574 0.248843 CAGGTCTGAAGGCTGGAGTC 59.751 60.000 0.00 0.0 0.0 3.36 R
2456 2486 0.971386 CCAACTGCAATTGAGGCCTT 59.029 50.000 9.94 0.0 0.0 4.35 R
2889 2920 2.564062 CACATTTTCCTGTCCCTGCATT 59.436 45.455 0.00 0.0 0.0 3.56 R
2893 2924 3.146104 ACTCACATTTTCCTGTCCCTG 57.854 47.619 0.00 0.0 0.0 4.45 R
4285 4480 1.667724 CGACCAGTGGCATTGATTCTC 59.332 52.381 9.78 0.0 0.0 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.275089 TCCCCGGTGATGCAATGG 59.725 61.111 0.00 0.00 0.00 3.16
18 19 2.275089 CCCCGGTGATGCAATGGA 59.725 61.111 0.00 0.00 0.00 3.41
19 20 1.379710 CCCCGGTGATGCAATGGAA 60.380 57.895 0.00 0.00 0.00 3.53
20 21 1.666209 CCCCGGTGATGCAATGGAAC 61.666 60.000 0.00 0.00 0.00 3.62
39 40 7.214467 TGGAACAACTTCTATTTCATGGAAC 57.786 36.000 0.00 0.00 31.92 3.62
40 41 7.004086 TGGAACAACTTCTATTTCATGGAACT 58.996 34.615 0.00 0.00 31.92 3.01
41 42 7.505585 TGGAACAACTTCTATTTCATGGAACTT 59.494 33.333 0.00 0.00 31.92 2.66
42 43 8.023706 GGAACAACTTCTATTTCATGGAACTTC 58.976 37.037 0.00 0.00 0.00 3.01
43 44 7.454260 ACAACTTCTATTTCATGGAACTTCC 57.546 36.000 0.20 0.20 36.96 3.46
60 61 7.096884 GAACTTCCAGTTCCTAAGTTTTTGT 57.903 36.000 5.46 0.00 46.68 2.83
61 62 8.217131 GAACTTCCAGTTCCTAAGTTTTTGTA 57.783 34.615 5.46 0.00 46.68 2.41
62 63 8.762481 AACTTCCAGTTCCTAAGTTTTTGTAT 57.238 30.769 0.00 0.00 39.74 2.29
63 64 8.762481 ACTTCCAGTTCCTAAGTTTTTGTATT 57.238 30.769 0.00 0.00 29.25 1.89
64 65 8.847196 ACTTCCAGTTCCTAAGTTTTTGTATTC 58.153 33.333 0.00 0.00 29.25 1.75
65 66 8.754991 TTCCAGTTCCTAAGTTTTTGTATTCA 57.245 30.769 0.00 0.00 0.00 2.57
66 67 8.934023 TCCAGTTCCTAAGTTTTTGTATTCAT 57.066 30.769 0.00 0.00 0.00 2.57
67 68 9.010029 TCCAGTTCCTAAGTTTTTGTATTCATC 57.990 33.333 0.00 0.00 0.00 2.92
68 69 8.792633 CCAGTTCCTAAGTTTTTGTATTCATCA 58.207 33.333 0.00 0.00 0.00 3.07
71 72 9.490663 GTTCCTAAGTTTTTGTATTCATCATCG 57.509 33.333 0.00 0.00 0.00 3.84
72 73 8.208718 TCCTAAGTTTTTGTATTCATCATCGG 57.791 34.615 0.00 0.00 0.00 4.18
73 74 7.827236 TCCTAAGTTTTTGTATTCATCATCGGT 59.173 33.333 0.00 0.00 0.00 4.69
74 75 8.458843 CCTAAGTTTTTGTATTCATCATCGGTT 58.541 33.333 0.00 0.00 0.00 4.44
75 76 9.840427 CTAAGTTTTTGTATTCATCATCGGTTT 57.160 29.630 0.00 0.00 0.00 3.27
77 78 9.541143 AAGTTTTTGTATTCATCATCGGTTTTT 57.459 25.926 0.00 0.00 0.00 1.94
85 86 9.665264 GTATTCATCATCGGTTTTTAGAATTCC 57.335 33.333 0.65 0.00 0.00 3.01
86 87 7.695480 TTCATCATCGGTTTTTAGAATTCCA 57.305 32.000 0.65 0.00 0.00 3.53
87 88 7.083875 TCATCATCGGTTTTTAGAATTCCAC 57.916 36.000 0.65 0.00 0.00 4.02
88 89 6.657117 TCATCATCGGTTTTTAGAATTCCACA 59.343 34.615 0.65 0.00 0.00 4.17
89 90 6.885952 TCATCGGTTTTTAGAATTCCACAA 57.114 33.333 0.65 0.00 0.00 3.33
90 91 7.278461 TCATCGGTTTTTAGAATTCCACAAA 57.722 32.000 0.65 0.00 0.00 2.83
91 92 7.891561 TCATCGGTTTTTAGAATTCCACAAAT 58.108 30.769 0.65 0.00 0.00 2.32
92 93 8.026607 TCATCGGTTTTTAGAATTCCACAAATC 58.973 33.333 0.65 0.00 0.00 2.17
93 94 6.683715 TCGGTTTTTAGAATTCCACAAATCC 58.316 36.000 0.65 6.71 0.00 3.01
94 95 6.265649 TCGGTTTTTAGAATTCCACAAATCCA 59.734 34.615 0.65 0.00 0.00 3.41
95 96 6.926272 CGGTTTTTAGAATTCCACAAATCCAA 59.074 34.615 0.65 0.00 0.00 3.53
96 97 7.602265 CGGTTTTTAGAATTCCACAAATCCAAT 59.398 33.333 0.65 0.00 0.00 3.16
97 98 9.936759 GGTTTTTAGAATTCCACAAATCCAATA 57.063 29.630 0.65 0.00 0.00 1.90
104 105 9.671279 AGAATTCCACAAATCCAATAAAAATCC 57.329 29.630 0.65 0.00 0.00 3.01
105 106 9.671279 GAATTCCACAAATCCAATAAAAATCCT 57.329 29.630 0.00 0.00 0.00 3.24
106 107 9.671279 AATTCCACAAATCCAATAAAAATCCTC 57.329 29.630 0.00 0.00 0.00 3.71
107 108 7.181569 TCCACAAATCCAATAAAAATCCTCC 57.818 36.000 0.00 0.00 0.00 4.30
108 109 6.728164 TCCACAAATCCAATAAAAATCCTCCA 59.272 34.615 0.00 0.00 0.00 3.86
109 110 7.236432 TCCACAAATCCAATAAAAATCCTCCAA 59.764 33.333 0.00 0.00 0.00 3.53
110 111 7.882271 CCACAAATCCAATAAAAATCCTCCAAA 59.118 33.333 0.00 0.00 0.00 3.28
111 112 9.282569 CACAAATCCAATAAAAATCCTCCAAAA 57.717 29.630 0.00 0.00 0.00 2.44
112 113 9.859152 ACAAATCCAATAAAAATCCTCCAAAAA 57.141 25.926 0.00 0.00 0.00 1.94
116 117 9.948964 ATCCAATAAAAATCCTCCAAAAAGAAG 57.051 29.630 0.00 0.00 0.00 2.85
117 118 8.374743 TCCAATAAAAATCCTCCAAAAAGAAGG 58.625 33.333 0.00 0.00 0.00 3.46
118 119 8.374743 CCAATAAAAATCCTCCAAAAAGAAGGA 58.625 33.333 0.00 0.00 0.00 3.36
119 120 9.777297 CAATAAAAATCCTCCAAAAAGAAGGAA 57.223 29.630 0.00 0.00 32.57 3.36
122 123 8.681486 AAAAATCCTCCAAAAAGAAGGAAATG 57.319 30.769 0.00 0.00 32.57 2.32
123 124 6.364568 AATCCTCCAAAAAGAAGGAAATGG 57.635 37.500 0.00 0.00 32.57 3.16
124 125 5.073437 TCCTCCAAAAAGAAGGAAATGGA 57.927 39.130 0.00 0.00 35.74 3.41
125 126 5.463154 TCCTCCAAAAAGAAGGAAATGGAA 58.537 37.500 0.00 0.00 36.59 3.53
126 127 5.902431 TCCTCCAAAAAGAAGGAAATGGAAA 59.098 36.000 0.00 0.00 36.59 3.13
127 128 6.041979 TCCTCCAAAAAGAAGGAAATGGAAAG 59.958 38.462 0.00 0.00 36.59 2.62
128 129 6.041979 CCTCCAAAAAGAAGGAAATGGAAAGA 59.958 38.462 0.00 0.00 36.59 2.52
129 130 7.418942 CCTCCAAAAAGAAGGAAATGGAAAGAA 60.419 37.037 0.00 0.00 36.59 2.52
130 131 7.856415 TCCAAAAAGAAGGAAATGGAAAGAAA 58.144 30.769 0.00 0.00 34.21 2.52
131 132 7.768582 TCCAAAAAGAAGGAAATGGAAAGAAAC 59.231 33.333 0.00 0.00 34.21 2.78
132 133 7.770433 CCAAAAAGAAGGAAATGGAAAGAAACT 59.230 33.333 0.00 0.00 0.00 2.66
133 134 9.816354 CAAAAAGAAGGAAATGGAAAGAAACTA 57.184 29.630 0.00 0.00 0.00 2.24
134 135 9.817809 AAAAAGAAGGAAATGGAAAGAAACTAC 57.182 29.630 0.00 0.00 0.00 2.73
135 136 8.533569 AAAGAAGGAAATGGAAAGAAACTACA 57.466 30.769 0.00 0.00 0.00 2.74
136 137 8.533569 AAGAAGGAAATGGAAAGAAACTACAA 57.466 30.769 0.00 0.00 0.00 2.41
137 138 8.533569 AGAAGGAAATGGAAAGAAACTACAAA 57.466 30.769 0.00 0.00 0.00 2.83
138 139 8.977412 AGAAGGAAATGGAAAGAAACTACAAAA 58.023 29.630 0.00 0.00 0.00 2.44
139 140 9.594478 GAAGGAAATGGAAAGAAACTACAAAAA 57.406 29.630 0.00 0.00 0.00 1.94
140 141 8.942338 AGGAAATGGAAAGAAACTACAAAAAC 57.058 30.769 0.00 0.00 0.00 2.43
141 142 7.704899 AGGAAATGGAAAGAAACTACAAAAACG 59.295 33.333 0.00 0.00 0.00 3.60
142 143 7.490079 GGAAATGGAAAGAAACTACAAAAACGT 59.510 33.333 0.00 0.00 0.00 3.99
143 144 9.505995 GAAATGGAAAGAAACTACAAAAACGTA 57.494 29.630 0.00 0.00 0.00 3.57
144 145 9.857957 AAATGGAAAGAAACTACAAAAACGTAA 57.142 25.926 0.00 0.00 0.00 3.18
145 146 9.857957 AATGGAAAGAAACTACAAAAACGTAAA 57.142 25.926 0.00 0.00 0.00 2.01
146 147 8.672214 TGGAAAGAAACTACAAAAACGTAAAC 57.328 30.769 0.00 0.00 0.00 2.01
147 148 8.295288 TGGAAAGAAACTACAAAAACGTAAACA 58.705 29.630 0.00 0.00 0.00 2.83
148 149 9.127006 GGAAAGAAACTACAAAAACGTAAACAA 57.873 29.630 0.00 0.00 0.00 2.83
152 153 9.843334 AGAAACTACAAAAACGTAAACAATTGA 57.157 25.926 13.59 0.00 0.00 2.57
153 154 9.875660 GAAACTACAAAAACGTAAACAATTGAC 57.124 29.630 13.59 0.00 0.00 3.18
154 155 8.967552 AACTACAAAAACGTAAACAATTGACA 57.032 26.923 13.59 0.00 0.00 3.58
155 156 8.967552 ACTACAAAAACGTAAACAATTGACAA 57.032 26.923 13.59 0.00 0.00 3.18
156 157 9.575783 ACTACAAAAACGTAAACAATTGACAAT 57.424 25.926 13.59 0.00 0.00 2.71
157 158 9.828220 CTACAAAAACGTAAACAATTGACAATG 57.172 29.630 13.59 4.58 0.00 2.82
158 159 8.245701 ACAAAAACGTAAACAATTGACAATGT 57.754 26.923 13.59 5.20 0.00 2.71
159 160 8.165428 ACAAAAACGTAAACAATTGACAATGTG 58.835 29.630 13.59 5.32 0.00 3.21
160 161 7.820044 AAAACGTAAACAATTGACAATGTGT 57.180 28.000 13.59 5.91 0.00 3.72
161 162 6.804534 AACGTAAACAATTGACAATGTGTG 57.195 33.333 13.59 0.00 0.00 3.82
162 163 5.885881 ACGTAAACAATTGACAATGTGTGT 58.114 33.333 13.59 6.46 45.74 3.72
163 164 5.741510 ACGTAAACAATTGACAATGTGTGTG 59.258 36.000 13.59 0.00 41.96 3.82
164 165 5.331458 CGTAAACAATTGACAATGTGTGTGC 60.331 40.000 13.59 6.57 41.96 4.57
165 166 4.389890 AACAATTGACAATGTGTGTGCT 57.610 36.364 13.59 0.00 41.96 4.40
166 167 4.389890 ACAATTGACAATGTGTGTGCTT 57.610 36.364 13.59 0.00 41.96 3.91
167 168 5.512753 ACAATTGACAATGTGTGTGCTTA 57.487 34.783 13.59 0.00 41.96 3.09
168 169 6.088016 ACAATTGACAATGTGTGTGCTTAT 57.912 33.333 13.59 0.00 41.96 1.73
169 170 6.514947 ACAATTGACAATGTGTGTGCTTATT 58.485 32.000 13.59 0.00 41.96 1.40
170 171 6.985645 ACAATTGACAATGTGTGTGCTTATTT 59.014 30.769 13.59 0.00 41.96 1.40
171 172 7.169645 ACAATTGACAATGTGTGTGCTTATTTC 59.830 33.333 13.59 0.00 41.96 2.17
172 173 5.764487 TGACAATGTGTGTGCTTATTTCA 57.236 34.783 0.00 0.00 41.96 2.69
173 174 5.518812 TGACAATGTGTGTGCTTATTTCAC 58.481 37.500 0.00 0.00 41.96 3.18
174 175 5.067023 TGACAATGTGTGTGCTTATTTCACA 59.933 36.000 0.00 0.00 41.96 3.58
175 176 5.900425 ACAATGTGTGTGCTTATTTCACAA 58.100 33.333 0.00 0.00 44.86 3.33
176 177 5.748152 ACAATGTGTGTGCTTATTTCACAAC 59.252 36.000 0.00 0.91 44.86 3.32
177 178 4.972514 TGTGTGTGCTTATTTCACAACA 57.027 36.364 0.00 3.14 44.86 3.33
178 179 5.316327 TGTGTGTGCTTATTTCACAACAA 57.684 34.783 0.00 0.00 44.86 2.83
179 180 5.098893 TGTGTGTGCTTATTTCACAACAAC 58.901 37.500 0.00 0.00 44.86 3.32
180 181 4.204168 GTGTGTGCTTATTTCACAACAACG 59.796 41.667 0.00 0.00 44.86 4.10
181 182 3.179599 GTGTGCTTATTTCACAACAACGC 59.820 43.478 0.00 0.00 44.86 4.84
182 183 3.066064 TGTGCTTATTTCACAACAACGCT 59.934 39.130 0.00 0.00 41.01 5.07
183 184 3.421888 GTGCTTATTTCACAACAACGCTG 59.578 43.478 0.00 0.00 34.73 5.18
184 185 2.405025 GCTTATTTCACAACAACGCTGC 59.595 45.455 0.00 0.00 0.00 5.25
185 186 3.853307 GCTTATTTCACAACAACGCTGCT 60.853 43.478 0.00 0.00 0.00 4.24
186 187 2.869233 ATTTCACAACAACGCTGCTT 57.131 40.000 0.00 0.00 0.00 3.91
187 188 3.980646 ATTTCACAACAACGCTGCTTA 57.019 38.095 0.00 0.00 0.00 3.09
188 189 2.748461 TTCACAACAACGCTGCTTAC 57.252 45.000 0.00 0.00 0.00 2.34
189 190 1.948104 TCACAACAACGCTGCTTACT 58.052 45.000 0.00 0.00 0.00 2.24
190 191 2.285083 TCACAACAACGCTGCTTACTT 58.715 42.857 0.00 0.00 0.00 2.24
191 192 2.286833 TCACAACAACGCTGCTTACTTC 59.713 45.455 0.00 0.00 0.00 3.01
192 193 2.031560 CACAACAACGCTGCTTACTTCA 59.968 45.455 0.00 0.00 0.00 3.02
193 194 2.680841 ACAACAACGCTGCTTACTTCAA 59.319 40.909 0.00 0.00 0.00 2.69
194 195 3.127895 ACAACAACGCTGCTTACTTCAAA 59.872 39.130 0.00 0.00 0.00 2.69
195 196 4.101942 CAACAACGCTGCTTACTTCAAAA 58.898 39.130 0.00 0.00 0.00 2.44
196 197 4.364415 ACAACGCTGCTTACTTCAAAAA 57.636 36.364 0.00 0.00 0.00 1.94
216 217 4.963276 AAAATGTCCATACACGTCCATG 57.037 40.909 0.00 0.00 38.78 3.66
217 218 3.904800 AATGTCCATACACGTCCATGA 57.095 42.857 7.35 0.00 38.78 3.07
218 219 2.959507 TGTCCATACACGTCCATGAG 57.040 50.000 7.35 0.00 0.00 2.90
219 220 1.480545 TGTCCATACACGTCCATGAGG 59.519 52.381 7.35 0.00 0.00 3.86
220 221 0.464036 TCCATACACGTCCATGAGGC 59.536 55.000 7.35 0.00 33.74 4.70
221 222 0.465705 CCATACACGTCCATGAGGCT 59.534 55.000 7.35 0.00 33.74 4.58
222 223 1.575244 CATACACGTCCATGAGGCTG 58.425 55.000 0.00 0.00 33.74 4.85
223 224 0.465705 ATACACGTCCATGAGGCTGG 59.534 55.000 0.00 0.00 37.66 4.85
224 225 0.902984 TACACGTCCATGAGGCTGGT 60.903 55.000 0.00 0.00 37.57 4.00
225 226 1.448540 CACGTCCATGAGGCTGGTC 60.449 63.158 0.00 0.00 37.57 4.02
226 227 1.913262 ACGTCCATGAGGCTGGTCA 60.913 57.895 0.00 0.00 37.57 4.02
227 228 1.267574 ACGTCCATGAGGCTGGTCAT 61.268 55.000 0.00 0.00 37.68 3.06
228 229 0.752658 CGTCCATGAGGCTGGTCATA 59.247 55.000 0.00 0.00 35.30 2.15
229 230 1.269988 CGTCCATGAGGCTGGTCATAG 60.270 57.143 0.00 0.00 35.30 2.23
230 231 1.765314 GTCCATGAGGCTGGTCATAGT 59.235 52.381 0.00 0.00 35.30 2.12
231 232 1.764723 TCCATGAGGCTGGTCATAGTG 59.235 52.381 0.00 0.00 35.30 2.74
232 233 1.202734 CCATGAGGCTGGTCATAGTGG 60.203 57.143 0.00 0.00 35.30 4.00
233 234 1.135094 ATGAGGCTGGTCATAGTGGG 58.865 55.000 0.00 0.00 35.30 4.61
234 235 0.982852 TGAGGCTGGTCATAGTGGGG 60.983 60.000 0.00 0.00 0.00 4.96
235 236 0.691078 GAGGCTGGTCATAGTGGGGA 60.691 60.000 0.00 0.00 0.00 4.81
236 237 0.692419 AGGCTGGTCATAGTGGGGAG 60.692 60.000 0.00 0.00 0.00 4.30
237 238 0.983378 GGCTGGTCATAGTGGGGAGT 60.983 60.000 0.00 0.00 0.00 3.85
238 239 1.691482 GGCTGGTCATAGTGGGGAGTA 60.691 57.143 0.00 0.00 0.00 2.59
239 240 2.116238 GCTGGTCATAGTGGGGAGTAA 58.884 52.381 0.00 0.00 0.00 2.24
240 241 2.158943 GCTGGTCATAGTGGGGAGTAAC 60.159 54.545 0.00 0.00 0.00 2.50
241 242 3.375699 CTGGTCATAGTGGGGAGTAACT 58.624 50.000 0.00 0.00 0.00 2.24
242 243 3.775316 CTGGTCATAGTGGGGAGTAACTT 59.225 47.826 0.00 0.00 0.00 2.66
243 244 4.950361 TGGTCATAGTGGGGAGTAACTTA 58.050 43.478 0.00 0.00 0.00 2.24
244 245 5.535029 TGGTCATAGTGGGGAGTAACTTAT 58.465 41.667 0.00 0.00 0.00 1.73
245 246 6.685541 TGGTCATAGTGGGGAGTAACTTATA 58.314 40.000 0.00 0.00 0.00 0.98
246 247 6.552350 TGGTCATAGTGGGGAGTAACTTATAC 59.448 42.308 0.00 0.00 0.00 1.47
247 248 6.781507 GGTCATAGTGGGGAGTAACTTATACT 59.218 42.308 0.00 0.00 0.00 2.12
248 249 7.946776 GGTCATAGTGGGGAGTAACTTATACTA 59.053 40.741 0.00 0.00 0.00 1.82
249 250 9.012161 GTCATAGTGGGGAGTAACTTATACTAG 57.988 40.741 0.00 0.00 0.00 2.57
250 251 8.730948 TCATAGTGGGGAGTAACTTATACTAGT 58.269 37.037 0.00 0.00 0.00 2.57
251 252 8.794553 CATAGTGGGGAGTAACTTATACTAGTG 58.205 40.741 5.39 0.00 0.00 2.74
252 253 6.739664 AGTGGGGAGTAACTTATACTAGTGT 58.260 40.000 5.39 0.39 0.00 3.55
253 254 6.832900 AGTGGGGAGTAACTTATACTAGTGTC 59.167 42.308 5.39 0.00 0.00 3.67
254 255 6.604795 GTGGGGAGTAACTTATACTAGTGTCA 59.395 42.308 5.39 0.00 0.00 3.58
255 256 7.287235 GTGGGGAGTAACTTATACTAGTGTCAT 59.713 40.741 5.39 0.00 0.00 3.06
256 257 7.287005 TGGGGAGTAACTTATACTAGTGTCATG 59.713 40.741 5.39 0.00 0.00 3.07
257 258 7.146648 GGGAGTAACTTATACTAGTGTCATGC 58.853 42.308 5.39 0.00 0.00 4.06
258 259 7.201884 GGGAGTAACTTATACTAGTGTCATGCA 60.202 40.741 5.39 0.00 0.00 3.96
259 260 8.361139 GGAGTAACTTATACTAGTGTCATGCAT 58.639 37.037 5.39 0.00 0.00 3.96
276 277 7.588497 TCATGCATATGACACTAGTCTAAGT 57.412 36.000 6.97 0.00 45.20 2.24
277 278 8.011844 TCATGCATATGACACTAGTCTAAGTT 57.988 34.615 6.97 0.00 45.20 2.66
278 279 9.131791 TCATGCATATGACACTAGTCTAAGTTA 57.868 33.333 6.97 0.00 45.20 2.24
279 280 9.186323 CATGCATATGACACTAGTCTAAGTTAC 57.814 37.037 6.97 0.00 45.20 2.50
280 281 8.521170 TGCATATGACACTAGTCTAAGTTACT 57.479 34.615 6.97 0.00 45.20 2.24
281 282 9.623000 TGCATATGACACTAGTCTAAGTTACTA 57.377 33.333 6.97 0.00 45.20 1.82
282 283 9.881529 GCATATGACACTAGTCTAAGTTACTAC 57.118 37.037 6.97 0.00 45.20 2.73
286 287 8.503458 TGACACTAGTCTAAGTTACTACATCC 57.497 38.462 0.00 0.00 45.20 3.51
287 288 8.105197 TGACACTAGTCTAAGTTACTACATCCA 58.895 37.037 0.00 0.00 45.20 3.41
288 289 9.122779 GACACTAGTCTAAGTTACTACATCCAT 57.877 37.037 0.00 0.00 41.64 3.41
293 294 7.942990 AGTCTAAGTTACTACATCCATAGTGC 58.057 38.462 0.00 0.00 36.09 4.40
294 295 7.560262 AGTCTAAGTTACTACATCCATAGTGCA 59.440 37.037 0.00 0.00 36.09 4.57
295 296 8.195436 GTCTAAGTTACTACATCCATAGTGCAA 58.805 37.037 0.00 0.00 36.09 4.08
296 297 8.755028 TCTAAGTTACTACATCCATAGTGCAAA 58.245 33.333 0.00 0.00 36.09 3.68
297 298 7.849804 AAGTTACTACATCCATAGTGCAAAG 57.150 36.000 0.00 0.00 36.09 2.77
298 299 6.947464 AGTTACTACATCCATAGTGCAAAGT 58.053 36.000 0.00 0.00 36.09 2.66
299 300 8.074613 AGTTACTACATCCATAGTGCAAAGTA 57.925 34.615 0.00 0.00 36.09 2.24
300 301 8.705594 AGTTACTACATCCATAGTGCAAAGTAT 58.294 33.333 0.00 0.00 36.09 2.12
301 302 8.979574 GTTACTACATCCATAGTGCAAAGTATC 58.020 37.037 0.00 0.00 36.09 2.24
302 303 7.366847 ACTACATCCATAGTGCAAAGTATCT 57.633 36.000 0.00 0.00 34.02 1.98
303 304 7.796054 ACTACATCCATAGTGCAAAGTATCTT 58.204 34.615 0.00 0.00 34.02 2.40
304 305 8.924303 ACTACATCCATAGTGCAAAGTATCTTA 58.076 33.333 0.00 0.00 34.02 2.10
305 306 9.416794 CTACATCCATAGTGCAAAGTATCTTAG 57.583 37.037 0.00 0.00 0.00 2.18
306 307 7.796054 ACATCCATAGTGCAAAGTATCTTAGT 58.204 34.615 0.00 0.00 0.00 2.24
307 308 8.924303 ACATCCATAGTGCAAAGTATCTTAGTA 58.076 33.333 0.00 0.00 0.00 1.82
308 309 9.416794 CATCCATAGTGCAAAGTATCTTAGTAG 57.583 37.037 0.00 0.00 0.00 2.57
309 310 8.534954 TCCATAGTGCAAAGTATCTTAGTAGT 57.465 34.615 0.00 0.00 0.00 2.73
310 311 9.636789 TCCATAGTGCAAAGTATCTTAGTAGTA 57.363 33.333 0.00 0.00 0.00 1.82
311 312 9.900710 CCATAGTGCAAAGTATCTTAGTAGTAG 57.099 37.037 0.00 0.00 0.00 2.57
314 315 8.350852 AGTGCAAAGTATCTTAGTAGTAGTGT 57.649 34.615 0.00 0.00 0.00 3.55
315 316 8.460428 AGTGCAAAGTATCTTAGTAGTAGTGTC 58.540 37.037 0.00 0.00 0.00 3.67
316 317 8.242053 GTGCAAAGTATCTTAGTAGTAGTGTCA 58.758 37.037 0.00 0.00 0.00 3.58
317 318 8.967918 TGCAAAGTATCTTAGTAGTAGTGTCAT 58.032 33.333 0.00 0.00 0.00 3.06
358 359 9.751542 ATTGTCTTATAGACTCAATTTACCTCG 57.248 33.333 8.18 0.00 45.27 4.63
359 360 8.515695 TGTCTTATAGACTCAATTTACCTCGA 57.484 34.615 8.18 0.00 45.27 4.04
360 361 8.622157 TGTCTTATAGACTCAATTTACCTCGAG 58.378 37.037 5.13 5.13 45.27 4.04
361 362 8.838365 GTCTTATAGACTCAATTTACCTCGAGA 58.162 37.037 15.71 0.00 41.88 4.04
362 363 9.404848 TCTTATAGACTCAATTTACCTCGAGAA 57.595 33.333 15.71 0.00 0.00 2.87
363 364 9.672086 CTTATAGACTCAATTTACCTCGAGAAG 57.328 37.037 15.71 0.00 0.00 2.85
364 365 4.749976 AGACTCAATTTACCTCGAGAAGC 58.250 43.478 15.71 0.00 0.00 3.86
365 366 3.512680 ACTCAATTTACCTCGAGAAGCG 58.487 45.455 15.71 0.00 42.69 4.68
366 367 2.268298 TCAATTTACCTCGAGAAGCGC 58.732 47.619 15.71 0.00 40.61 5.92
367 368 2.094182 TCAATTTACCTCGAGAAGCGCT 60.094 45.455 15.71 2.64 40.61 5.92
368 369 3.129813 TCAATTTACCTCGAGAAGCGCTA 59.870 43.478 12.05 0.00 40.61 4.26
369 370 4.051922 CAATTTACCTCGAGAAGCGCTAT 58.948 43.478 12.05 1.33 40.61 2.97
370 371 2.776312 TTACCTCGAGAAGCGCTATG 57.224 50.000 12.05 0.24 40.61 2.23
371 372 1.676746 TACCTCGAGAAGCGCTATGT 58.323 50.000 12.05 0.00 40.61 2.29
372 373 0.818296 ACCTCGAGAAGCGCTATGTT 59.182 50.000 12.05 0.00 40.61 2.71
373 374 2.022195 ACCTCGAGAAGCGCTATGTTA 58.978 47.619 12.05 0.00 40.61 2.41
374 375 2.223525 ACCTCGAGAAGCGCTATGTTAC 60.224 50.000 12.05 0.00 40.61 2.50
375 376 2.223502 CCTCGAGAAGCGCTATGTTACA 60.224 50.000 12.05 0.00 40.61 2.41
376 377 3.039405 CTCGAGAAGCGCTATGTTACAG 58.961 50.000 12.05 0.00 40.61 2.74
377 378 2.422479 TCGAGAAGCGCTATGTTACAGT 59.578 45.455 12.05 0.00 40.61 3.55
378 379 3.624410 TCGAGAAGCGCTATGTTACAGTA 59.376 43.478 12.05 0.00 40.61 2.74
379 380 4.095334 TCGAGAAGCGCTATGTTACAGTAA 59.905 41.667 12.05 0.00 40.61 2.24
380 381 4.204573 CGAGAAGCGCTATGTTACAGTAAC 59.795 45.833 12.05 15.58 39.11 2.50
381 382 8.270126 TCGAGAAGCGCTATGTTACAGTAACA 62.270 42.308 25.09 25.09 45.32 2.41
407 408 2.972348 TGGTACTCCAAACACCTCTCT 58.028 47.619 0.00 0.00 41.25 3.10
408 409 2.897969 TGGTACTCCAAACACCTCTCTC 59.102 50.000 0.00 0.00 41.25 3.20
409 410 2.234168 GGTACTCCAAACACCTCTCTCC 59.766 54.545 0.00 0.00 0.00 3.71
410 411 2.407340 ACTCCAAACACCTCTCTCCT 57.593 50.000 0.00 0.00 0.00 3.69
411 412 2.252714 ACTCCAAACACCTCTCTCCTC 58.747 52.381 0.00 0.00 0.00 3.71
412 413 2.251818 CTCCAAACACCTCTCTCCTCA 58.748 52.381 0.00 0.00 0.00 3.86
413 414 2.836981 CTCCAAACACCTCTCTCCTCAT 59.163 50.000 0.00 0.00 0.00 2.90
414 415 3.251484 TCCAAACACCTCTCTCCTCATT 58.749 45.455 0.00 0.00 0.00 2.57
415 416 4.425772 TCCAAACACCTCTCTCCTCATTA 58.574 43.478 0.00 0.00 0.00 1.90
416 417 4.844085 TCCAAACACCTCTCTCCTCATTAA 59.156 41.667 0.00 0.00 0.00 1.40
417 418 5.309543 TCCAAACACCTCTCTCCTCATTAAA 59.690 40.000 0.00 0.00 0.00 1.52
418 419 6.012508 TCCAAACACCTCTCTCCTCATTAAAT 60.013 38.462 0.00 0.00 0.00 1.40
419 420 7.182026 TCCAAACACCTCTCTCCTCATTAAATA 59.818 37.037 0.00 0.00 0.00 1.40
420 421 7.281100 CCAAACACCTCTCTCCTCATTAAATAC 59.719 40.741 0.00 0.00 0.00 1.89
421 422 7.741554 AACACCTCTCTCCTCATTAAATACT 57.258 36.000 0.00 0.00 0.00 2.12
422 423 7.741554 ACACCTCTCTCCTCATTAAATACTT 57.258 36.000 0.00 0.00 0.00 2.24
423 424 7.560368 ACACCTCTCTCCTCATTAAATACTTG 58.440 38.462 0.00 0.00 0.00 3.16
424 425 6.481644 CACCTCTCTCCTCATTAAATACTTGC 59.518 42.308 0.00 0.00 0.00 4.01
425 426 5.994668 CCTCTCTCCTCATTAAATACTTGCC 59.005 44.000 0.00 0.00 0.00 4.52
426 427 6.408548 CCTCTCTCCTCATTAAATACTTGCCA 60.409 42.308 0.00 0.00 0.00 4.92
427 428 6.349300 TCTCTCCTCATTAAATACTTGCCAC 58.651 40.000 0.00 0.00 0.00 5.01
428 429 6.061022 TCTCCTCATTAAATACTTGCCACA 57.939 37.500 0.00 0.00 0.00 4.17
429 430 6.662755 TCTCCTCATTAAATACTTGCCACAT 58.337 36.000 0.00 0.00 0.00 3.21
430 431 7.801104 TCTCCTCATTAAATACTTGCCACATA 58.199 34.615 0.00 0.00 0.00 2.29
431 432 8.271458 TCTCCTCATTAAATACTTGCCACATAA 58.729 33.333 0.00 0.00 0.00 1.90
432 433 8.450578 TCCTCATTAAATACTTGCCACATAAG 57.549 34.615 0.00 0.00 0.00 1.73
433 434 8.052748 TCCTCATTAAATACTTGCCACATAAGT 58.947 33.333 0.00 0.00 41.06 2.24
434 435 9.337396 CCTCATTAAATACTTGCCACATAAGTA 57.663 33.333 0.00 0.00 42.77 2.24
441 442 8.807948 AATACTTGCCACATAAGTAGAATTGT 57.192 30.769 0.00 0.00 42.12 2.71
442 443 8.807948 ATACTTGCCACATAAGTAGAATTGTT 57.192 30.769 0.00 0.00 42.12 2.83
443 444 7.524717 ACTTGCCACATAAGTAGAATTGTTT 57.475 32.000 0.00 0.00 36.66 2.83
444 445 7.951591 ACTTGCCACATAAGTAGAATTGTTTT 58.048 30.769 0.00 0.00 36.66 2.43
445 446 7.867403 ACTTGCCACATAAGTAGAATTGTTTTG 59.133 33.333 0.00 0.00 36.66 2.44
446 447 6.686630 TGCCACATAAGTAGAATTGTTTTGG 58.313 36.000 0.00 0.00 0.00 3.28
447 448 6.099341 GCCACATAAGTAGAATTGTTTTGGG 58.901 40.000 0.00 0.00 0.00 4.12
448 449 6.630071 CCACATAAGTAGAATTGTTTTGGGG 58.370 40.000 0.00 0.00 0.00 4.96
449 450 6.210584 CCACATAAGTAGAATTGTTTTGGGGT 59.789 38.462 0.00 0.00 0.00 4.95
450 451 7.090173 CACATAAGTAGAATTGTTTTGGGGTG 58.910 38.462 0.00 0.00 0.00 4.61
451 452 6.780522 ACATAAGTAGAATTGTTTTGGGGTGT 59.219 34.615 0.00 0.00 0.00 4.16
452 453 5.529581 AAGTAGAATTGTTTTGGGGTGTG 57.470 39.130 0.00 0.00 0.00 3.82
453 454 4.542697 AGTAGAATTGTTTTGGGGTGTGT 58.457 39.130 0.00 0.00 0.00 3.72
454 455 4.959839 AGTAGAATTGTTTTGGGGTGTGTT 59.040 37.500 0.00 0.00 0.00 3.32
455 456 6.130569 AGTAGAATTGTTTTGGGGTGTGTTA 58.869 36.000 0.00 0.00 0.00 2.41
456 457 5.941555 AGAATTGTTTTGGGGTGTGTTAA 57.058 34.783 0.00 0.00 0.00 2.01
457 458 5.912892 AGAATTGTTTTGGGGTGTGTTAAG 58.087 37.500 0.00 0.00 0.00 1.85
458 459 5.423931 AGAATTGTTTTGGGGTGTGTTAAGT 59.576 36.000 0.00 0.00 0.00 2.24
459 460 5.685520 ATTGTTTTGGGGTGTGTTAAGTT 57.314 34.783 0.00 0.00 0.00 2.66
460 461 6.793505 ATTGTTTTGGGGTGTGTTAAGTTA 57.206 33.333 0.00 0.00 0.00 2.24
461 462 5.579564 TGTTTTGGGGTGTGTTAAGTTAC 57.420 39.130 0.00 0.00 0.00 2.50
462 463 5.262804 TGTTTTGGGGTGTGTTAAGTTACT 58.737 37.500 0.00 0.00 0.00 2.24
463 464 6.421485 TGTTTTGGGGTGTGTTAAGTTACTA 58.579 36.000 0.00 0.00 0.00 1.82
464 465 6.318396 TGTTTTGGGGTGTGTTAAGTTACTAC 59.682 38.462 0.00 0.00 0.00 2.73
465 466 5.892524 TTGGGGTGTGTTAAGTTACTACT 57.107 39.130 0.00 0.00 35.68 2.57
466 467 5.892524 TGGGGTGTGTTAAGTTACTACTT 57.107 39.130 0.00 0.00 46.18 2.24
467 468 6.992664 TGGGGTGTGTTAAGTTACTACTTA 57.007 37.500 0.00 0.00 42.73 2.24
484 485 7.594351 ACTACTTAAGTTACCCTACTATGGC 57.406 40.000 14.49 0.00 33.35 4.40
485 486 7.360643 ACTACTTAAGTTACCCTACTATGGCT 58.639 38.462 14.49 0.00 33.35 4.75
486 487 8.506083 ACTACTTAAGTTACCCTACTATGGCTA 58.494 37.037 14.49 0.00 33.35 3.93
487 488 7.836479 ACTTAAGTTACCCTACTATGGCTAG 57.164 40.000 1.12 0.00 0.00 3.42
488 489 6.267242 ACTTAAGTTACCCTACTATGGCTAGC 59.733 42.308 6.04 6.04 0.00 3.42
489 490 3.508426 AGTTACCCTACTATGGCTAGCC 58.492 50.000 27.71 27.71 0.00 3.93
513 514 6.600822 CCTGATGTTTCTAGAATCCAACATGT 59.399 38.462 20.16 0.00 39.43 3.21
543 544 3.719924 CGGGTCGGCTTAATGTGTATAA 58.280 45.455 0.00 0.00 0.00 0.98
570 571 5.163530 TGTGTGTTGCTGAACAAATGATCTT 60.164 36.000 0.00 0.00 43.77 2.40
593 594 4.100529 CGGGCATATACTACCGTTTATCG 58.899 47.826 0.00 0.00 41.34 2.92
616 618 2.778679 GTTGCGTGGCTTAGCGAG 59.221 61.111 0.00 0.00 35.87 5.03
803 808 1.202313 TGCAACCACGCCTTAAACAAC 60.202 47.619 0.00 0.00 0.00 3.32
808 813 1.066303 CCACGCCTTAAACAACAGCAA 59.934 47.619 0.00 0.00 0.00 3.91
815 820 4.439776 GCCTTAAACAACAGCAAAAGTACG 59.560 41.667 0.00 0.00 0.00 3.67
952 958 3.068590 AGGCACACACAGAAAAATTCCAG 59.931 43.478 0.00 0.00 0.00 3.86
971 977 0.620556 GTCTTCCCCATGCTTGAGGA 59.379 55.000 0.00 0.00 0.00 3.71
995 1001 2.757508 CAGCAGCGAGAGGAGGGA 60.758 66.667 0.00 0.00 0.00 4.20
1115 1121 4.194720 CGACTCCCCTCTTCGCCG 62.195 72.222 0.00 0.00 0.00 6.46
1116 1122 4.516195 GACTCCCCTCTTCGCCGC 62.516 72.222 0.00 0.00 0.00 6.53
1250 1267 1.341531 AGCAGAGTGTACTCACCACAC 59.658 52.381 13.95 0.00 45.21 3.82
1456 1473 8.846943 ACTGATTGTTATCATCACAACACTAA 57.153 30.769 0.00 0.00 39.94 2.24
1492 1509 3.086733 GCTGTCTGCATACCTTCCC 57.913 57.895 0.00 0.00 42.31 3.97
1495 1512 0.911769 TGTCTGCATACCTTCCCTGG 59.088 55.000 0.00 0.00 0.00 4.45
1527 1544 2.239400 TCAGCTCTACCATCATACCCG 58.761 52.381 0.00 0.00 0.00 5.28
1534 1551 5.547465 CTCTACCATCATACCCGCAATAAA 58.453 41.667 0.00 0.00 0.00 1.40
1537 1554 3.882888 ACCATCATACCCGCAATAAACAG 59.117 43.478 0.00 0.00 0.00 3.16
1544 1561 1.202405 CCCGCAATAAACAGAATGGCC 60.202 52.381 0.00 0.00 43.62 5.36
1555 1572 0.036010 AGAATGGCCGGAGTCAACAG 60.036 55.000 5.05 0.00 0.00 3.16
1557 1574 3.958147 ATGGCCGGAGTCAACAGCG 62.958 63.158 5.05 0.00 0.00 5.18
1559 1576 3.112709 GCCGGAGTCAACAGCGAC 61.113 66.667 5.05 0.00 36.08 5.19
1597 1614 2.919494 GCTGAAACCAACAGGGCGG 61.919 63.158 0.00 0.00 42.05 6.13
1631 1648 2.632377 ACGATTCCAGTTGCCAGTATG 58.368 47.619 0.00 0.00 0.00 2.39
1640 1657 1.949525 GTTGCCAGTATGCATACCAGG 59.050 52.381 28.78 28.78 41.70 4.45
1651 1668 1.896220 CATACCAGGTGCAACACTGT 58.104 50.000 3.64 0.00 39.98 3.55
1653 1670 2.831685 TACCAGGTGCAACACTGTAG 57.168 50.000 3.64 0.00 39.98 2.74
1654 1671 0.108585 ACCAGGTGCAACACTGTAGG 59.891 55.000 3.64 0.00 39.98 3.18
1661 1678 2.038033 GTGCAACACTGTAGGACCCTTA 59.962 50.000 0.00 0.00 36.32 2.69
1673 1690 1.134220 GGACCCTTATGATGTTCGCCA 60.134 52.381 0.00 0.00 0.00 5.69
1674 1691 2.639065 GACCCTTATGATGTTCGCCAA 58.361 47.619 0.00 0.00 0.00 4.52
1785 1802 0.905357 CTGATGAACGGAACCTCCCT 59.095 55.000 0.00 0.00 31.13 4.20
2013 2030 4.181578 GCATTGGACTCGTAAGTACACAT 58.818 43.478 0.00 0.00 46.32 3.21
2024 2041 5.808540 TCGTAAGTACACATGGTTATTGCTC 59.191 40.000 0.00 0.00 39.48 4.26
2154 2173 7.043961 AGAGAAAAGGTCAAACAATCTTTCC 57.956 36.000 0.00 0.00 0.00 3.13
2155 2174 5.831997 AGAAAAGGTCAAACAATCTTTCCG 58.168 37.500 0.00 0.00 0.00 4.30
2166 2189 7.497909 TCAAACAATCTTTCCGAGTAAAAGTCT 59.502 33.333 0.00 0.00 35.64 3.24
2286 2316 4.530710 TGGGCTTGTAACAGTACTACAG 57.469 45.455 0.00 0.00 31.17 2.74
2399 2429 2.927028 AGGTTACCGAACAAGCAAACT 58.073 42.857 0.00 0.00 37.29 2.66
2455 2485 7.362802 ACCTATATCCCACTAGTTGACTTTC 57.637 40.000 0.00 0.00 0.00 2.62
2456 2486 6.901300 ACCTATATCCCACTAGTTGACTTTCA 59.099 38.462 0.00 0.00 0.00 2.69
2769 2800 9.303116 TCAGGTAAAATTTAGGTCATTTTGCTA 57.697 29.630 0.00 0.00 36.79 3.49
2856 2887 7.997482 AGTACACTACACAATACTCATAGGTG 58.003 38.462 0.00 0.00 35.66 4.00
2889 2920 6.016555 TGAACTAGCTGCTCCATATACCATA 58.983 40.000 4.91 0.00 0.00 2.74
2893 2924 4.521146 AGCTGCTCCATATACCATAATGC 58.479 43.478 0.00 0.00 0.00 3.56
2927 2958 1.064017 TGTGAGTTTCCTGCCTTGGTT 60.064 47.619 0.00 0.00 0.00 3.67
3000 3051 4.814294 GCAGAGCCGTACCCACCG 62.814 72.222 0.00 0.00 0.00 4.94
3037 3088 6.299141 AGTGGATTGTTTGTGATGTCTAGTT 58.701 36.000 0.00 0.00 0.00 2.24
3310 3361 5.048846 ACACTCCATATATTGGGTTGGAC 57.951 43.478 4.69 0.00 46.45 4.02
3616 3667 1.927895 CACGGACATCTACAGAAGCC 58.072 55.000 0.00 0.00 0.00 4.35
3832 3883 7.667043 AGACTATTCAATTACGTCAGCAAAA 57.333 32.000 0.00 0.00 0.00 2.44
3855 3906 7.611213 AAGATTTAAGGAGTGTAATGAACCG 57.389 36.000 0.00 0.00 0.00 4.44
4035 4105 5.774498 CCCCCACAAAGAAATATAAGAGC 57.226 43.478 0.00 0.00 0.00 4.09
4036 4106 5.200483 CCCCCACAAAGAAATATAAGAGCA 58.800 41.667 0.00 0.00 0.00 4.26
4037 4107 5.835280 CCCCCACAAAGAAATATAAGAGCAT 59.165 40.000 0.00 0.00 0.00 3.79
4038 4108 6.324770 CCCCCACAAAGAAATATAAGAGCATT 59.675 38.462 0.00 0.00 0.00 3.56
4039 4109 7.147672 CCCCCACAAAGAAATATAAGAGCATTT 60.148 37.037 0.00 0.00 0.00 2.32
4040 4110 8.912988 CCCCACAAAGAAATATAAGAGCATTTA 58.087 33.333 0.00 0.00 0.00 1.40
4041 4111 9.956720 CCCACAAAGAAATATAAGAGCATTTAG 57.043 33.333 0.00 0.00 0.00 1.85
4285 4480 6.348540 GGAACAAGGTAGTACAAAGCATCAAG 60.349 42.308 2.06 0.00 0.00 3.02
4509 4704 5.280654 TCATTTCATCAGATCGATCCACA 57.719 39.130 21.66 6.40 29.21 4.17
4521 4716 7.340487 TCAGATCGATCCACAGCTATATTGTAT 59.660 37.037 21.66 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.857638 TTCCATTGCATCACCGGGGA 61.858 55.000 9.99 9.99 0.00 4.81
1 2 1.379710 TTCCATTGCATCACCGGGG 60.380 57.895 6.32 0.00 0.00 5.73
2 3 0.964860 TGTTCCATTGCATCACCGGG 60.965 55.000 6.32 0.00 0.00 5.73
3 4 0.887247 TTGTTCCATTGCATCACCGG 59.113 50.000 0.00 0.00 0.00 5.28
4 5 1.541147 AGTTGTTCCATTGCATCACCG 59.459 47.619 0.00 0.00 0.00 4.94
5 6 3.256631 AGAAGTTGTTCCATTGCATCACC 59.743 43.478 0.00 0.00 32.48 4.02
6 7 4.510038 AGAAGTTGTTCCATTGCATCAC 57.490 40.909 0.00 0.00 32.48 3.06
7 8 6.839124 AATAGAAGTTGTTCCATTGCATCA 57.161 33.333 0.00 0.00 32.48 3.07
8 9 7.315142 TGAAATAGAAGTTGTTCCATTGCATC 58.685 34.615 0.00 0.00 27.67 3.91
9 10 7.230849 TGAAATAGAAGTTGTTCCATTGCAT 57.769 32.000 0.00 0.00 27.67 3.96
10 11 6.647334 TGAAATAGAAGTTGTTCCATTGCA 57.353 33.333 0.00 0.00 29.56 4.08
11 12 6.532657 CCATGAAATAGAAGTTGTTCCATTGC 59.467 38.462 0.00 0.00 32.48 3.56
12 13 7.829725 TCCATGAAATAGAAGTTGTTCCATTG 58.170 34.615 0.00 0.00 32.48 2.82
13 14 8.306761 GTTCCATGAAATAGAAGTTGTTCCATT 58.693 33.333 0.00 0.00 32.48 3.16
14 15 7.671398 AGTTCCATGAAATAGAAGTTGTTCCAT 59.329 33.333 0.00 0.00 32.48 3.41
15 16 7.004086 AGTTCCATGAAATAGAAGTTGTTCCA 58.996 34.615 0.00 0.00 32.48 3.53
16 17 7.454260 AGTTCCATGAAATAGAAGTTGTTCC 57.546 36.000 0.00 0.00 32.48 3.62
17 18 8.023706 GGAAGTTCCATGAAATAGAAGTTGTTC 58.976 37.037 17.44 0.00 37.65 3.18
18 19 7.505585 TGGAAGTTCCATGAAATAGAAGTTGTT 59.494 33.333 21.05 0.00 42.67 2.83
19 20 7.004086 TGGAAGTTCCATGAAATAGAAGTTGT 58.996 34.615 21.05 0.00 42.67 3.32
20 21 7.452880 TGGAAGTTCCATGAAATAGAAGTTG 57.547 36.000 21.05 0.00 42.67 3.16
39 40 8.846211 TGAATACAAAAACTTAGGAACTGGAAG 58.154 33.333 0.00 0.00 41.52 3.46
40 41 8.754991 TGAATACAAAAACTTAGGAACTGGAA 57.245 30.769 0.00 0.00 41.52 3.53
41 42 8.934023 ATGAATACAAAAACTTAGGAACTGGA 57.066 30.769 0.00 0.00 41.52 3.86
42 43 8.792633 TGATGAATACAAAAACTTAGGAACTGG 58.207 33.333 0.00 0.00 41.52 4.00
45 46 9.490663 CGATGATGAATACAAAAACTTAGGAAC 57.509 33.333 0.00 0.00 0.00 3.62
46 47 8.673711 CCGATGATGAATACAAAAACTTAGGAA 58.326 33.333 0.00 0.00 0.00 3.36
47 48 7.827236 ACCGATGATGAATACAAAAACTTAGGA 59.173 33.333 0.00 0.00 0.00 2.94
48 49 7.985476 ACCGATGATGAATACAAAAACTTAGG 58.015 34.615 0.00 0.00 0.00 2.69
49 50 9.840427 AAACCGATGATGAATACAAAAACTTAG 57.160 29.630 0.00 0.00 0.00 2.18
51 52 9.541143 AAAAACCGATGATGAATACAAAAACTT 57.459 25.926 0.00 0.00 0.00 2.66
59 60 9.665264 GGAATTCTAAAAACCGATGATGAATAC 57.335 33.333 5.23 0.00 0.00 1.89
60 61 9.402320 TGGAATTCTAAAAACCGATGATGAATA 57.598 29.630 5.23 0.00 0.00 1.75
61 62 8.190784 GTGGAATTCTAAAAACCGATGATGAAT 58.809 33.333 5.23 0.00 0.00 2.57
62 63 7.175816 TGTGGAATTCTAAAAACCGATGATGAA 59.824 33.333 5.23 0.00 0.00 2.57
63 64 6.657117 TGTGGAATTCTAAAAACCGATGATGA 59.343 34.615 5.23 0.00 0.00 2.92
64 65 6.851609 TGTGGAATTCTAAAAACCGATGATG 58.148 36.000 5.23 0.00 0.00 3.07
65 66 7.461182 TTGTGGAATTCTAAAAACCGATGAT 57.539 32.000 5.23 0.00 0.00 2.45
66 67 6.885952 TTGTGGAATTCTAAAAACCGATGA 57.114 33.333 5.23 0.00 0.00 2.92
67 68 7.275560 GGATTTGTGGAATTCTAAAAACCGATG 59.724 37.037 9.14 0.00 0.00 3.84
68 69 7.039363 TGGATTTGTGGAATTCTAAAAACCGAT 60.039 33.333 9.14 0.00 0.00 4.18
69 70 6.265649 TGGATTTGTGGAATTCTAAAAACCGA 59.734 34.615 9.14 0.00 0.00 4.69
70 71 6.451393 TGGATTTGTGGAATTCTAAAAACCG 58.549 36.000 9.14 0.00 0.00 4.44
71 72 8.846943 ATTGGATTTGTGGAATTCTAAAAACC 57.153 30.769 9.14 12.14 0.00 3.27
78 79 9.671279 GGATTTTTATTGGATTTGTGGAATTCT 57.329 29.630 5.23 0.00 0.00 2.40
79 80 9.671279 AGGATTTTTATTGGATTTGTGGAATTC 57.329 29.630 0.00 0.00 0.00 2.17
80 81 9.671279 GAGGATTTTTATTGGATTTGTGGAATT 57.329 29.630 0.00 0.00 0.00 2.17
81 82 8.267183 GGAGGATTTTTATTGGATTTGTGGAAT 58.733 33.333 0.00 0.00 0.00 3.01
82 83 7.236432 TGGAGGATTTTTATTGGATTTGTGGAA 59.764 33.333 0.00 0.00 0.00 3.53
83 84 6.728164 TGGAGGATTTTTATTGGATTTGTGGA 59.272 34.615 0.00 0.00 0.00 4.02
84 85 6.945218 TGGAGGATTTTTATTGGATTTGTGG 58.055 36.000 0.00 0.00 0.00 4.17
85 86 8.845413 TTTGGAGGATTTTTATTGGATTTGTG 57.155 30.769 0.00 0.00 0.00 3.33
86 87 9.859152 TTTTTGGAGGATTTTTATTGGATTTGT 57.141 25.926 0.00 0.00 0.00 2.83
90 91 9.948964 CTTCTTTTTGGAGGATTTTTATTGGAT 57.051 29.630 0.00 0.00 0.00 3.41
91 92 8.374743 CCTTCTTTTTGGAGGATTTTTATTGGA 58.625 33.333 0.00 0.00 0.00 3.53
92 93 8.374743 TCCTTCTTTTTGGAGGATTTTTATTGG 58.625 33.333 0.00 0.00 0.00 3.16
93 94 9.777297 TTCCTTCTTTTTGGAGGATTTTTATTG 57.223 29.630 0.00 0.00 33.46 1.90
96 97 9.777297 CATTTCCTTCTTTTTGGAGGATTTTTA 57.223 29.630 0.00 0.00 33.46 1.52
97 98 7.720957 CCATTTCCTTCTTTTTGGAGGATTTTT 59.279 33.333 0.00 0.00 33.46 1.94
98 99 7.072328 TCCATTTCCTTCTTTTTGGAGGATTTT 59.928 33.333 0.00 0.00 33.46 1.82
99 100 6.558394 TCCATTTCCTTCTTTTTGGAGGATTT 59.442 34.615 0.00 0.00 33.46 2.17
100 101 6.084060 TCCATTTCCTTCTTTTTGGAGGATT 58.916 36.000 0.00 0.00 33.46 3.01
101 102 5.654370 TCCATTTCCTTCTTTTTGGAGGAT 58.346 37.500 0.00 0.00 33.46 3.24
102 103 5.073437 TCCATTTCCTTCTTTTTGGAGGA 57.927 39.130 0.00 0.00 33.46 3.71
103 104 5.806654 TTCCATTTCCTTCTTTTTGGAGG 57.193 39.130 0.00 0.00 34.91 4.30
104 105 7.054491 TCTTTCCATTTCCTTCTTTTTGGAG 57.946 36.000 0.00 0.00 34.91 3.86
105 106 7.430760 TTCTTTCCATTTCCTTCTTTTTGGA 57.569 32.000 0.00 0.00 0.00 3.53
106 107 7.770433 AGTTTCTTTCCATTTCCTTCTTTTTGG 59.230 33.333 0.00 0.00 0.00 3.28
107 108 8.722480 AGTTTCTTTCCATTTCCTTCTTTTTG 57.278 30.769 0.00 0.00 0.00 2.44
108 109 9.817809 GTAGTTTCTTTCCATTTCCTTCTTTTT 57.182 29.630 0.00 0.00 0.00 1.94
109 110 8.977412 TGTAGTTTCTTTCCATTTCCTTCTTTT 58.023 29.630 0.00 0.00 0.00 2.27
110 111 8.533569 TGTAGTTTCTTTCCATTTCCTTCTTT 57.466 30.769 0.00 0.00 0.00 2.52
111 112 8.533569 TTGTAGTTTCTTTCCATTTCCTTCTT 57.466 30.769 0.00 0.00 0.00 2.52
112 113 8.533569 TTTGTAGTTTCTTTCCATTTCCTTCT 57.466 30.769 0.00 0.00 0.00 2.85
113 114 9.594478 TTTTTGTAGTTTCTTTCCATTTCCTTC 57.406 29.630 0.00 0.00 0.00 3.46
114 115 9.378551 GTTTTTGTAGTTTCTTTCCATTTCCTT 57.621 29.630 0.00 0.00 0.00 3.36
115 116 7.704899 CGTTTTTGTAGTTTCTTTCCATTTCCT 59.295 33.333 0.00 0.00 0.00 3.36
116 117 7.490079 ACGTTTTTGTAGTTTCTTTCCATTTCC 59.510 33.333 0.00 0.00 0.00 3.13
117 118 8.402326 ACGTTTTTGTAGTTTCTTTCCATTTC 57.598 30.769 0.00 0.00 0.00 2.17
118 119 9.857957 TTACGTTTTTGTAGTTTCTTTCCATTT 57.142 25.926 0.00 0.00 0.00 2.32
119 120 9.857957 TTTACGTTTTTGTAGTTTCTTTCCATT 57.142 25.926 0.00 0.00 0.00 3.16
120 121 9.292846 GTTTACGTTTTTGTAGTTTCTTTCCAT 57.707 29.630 0.00 0.00 0.00 3.41
121 122 8.295288 TGTTTACGTTTTTGTAGTTTCTTTCCA 58.705 29.630 0.00 0.00 0.00 3.53
122 123 8.672214 TGTTTACGTTTTTGTAGTTTCTTTCC 57.328 30.769 0.00 0.00 0.00 3.13
126 127 9.843334 TCAATTGTTTACGTTTTTGTAGTTTCT 57.157 25.926 5.13 0.00 0.00 2.52
127 128 9.875660 GTCAATTGTTTACGTTTTTGTAGTTTC 57.124 29.630 5.13 0.00 0.00 2.78
128 129 9.408069 TGTCAATTGTTTACGTTTTTGTAGTTT 57.592 25.926 5.13 0.00 0.00 2.66
129 130 8.967552 TGTCAATTGTTTACGTTTTTGTAGTT 57.032 26.923 5.13 0.00 0.00 2.24
130 131 8.967552 TTGTCAATTGTTTACGTTTTTGTAGT 57.032 26.923 5.13 0.00 0.00 2.73
131 132 9.828220 CATTGTCAATTGTTTACGTTTTTGTAG 57.172 29.630 5.13 0.00 0.00 2.74
132 133 9.355215 ACATTGTCAATTGTTTACGTTTTTGTA 57.645 25.926 5.13 0.00 0.00 2.41
133 134 8.165428 CACATTGTCAATTGTTTACGTTTTTGT 58.835 29.630 5.13 0.00 0.00 2.83
134 135 8.165428 ACACATTGTCAATTGTTTACGTTTTTG 58.835 29.630 5.13 0.00 0.00 2.44
135 136 8.165428 CACACATTGTCAATTGTTTACGTTTTT 58.835 29.630 5.13 0.00 0.00 1.94
136 137 7.329717 ACACACATTGTCAATTGTTTACGTTTT 59.670 29.630 5.13 0.00 29.79 2.43
137 138 6.809196 ACACACATTGTCAATTGTTTACGTTT 59.191 30.769 5.13 0.00 29.79 3.60
138 139 6.252441 CACACACATTGTCAATTGTTTACGTT 59.748 34.615 5.13 0.00 35.67 3.99
139 140 5.741510 CACACACATTGTCAATTGTTTACGT 59.258 36.000 5.13 0.00 35.67 3.57
140 141 5.331458 GCACACACATTGTCAATTGTTTACG 60.331 40.000 5.13 0.00 35.67 3.18
141 142 5.748152 AGCACACACATTGTCAATTGTTTAC 59.252 36.000 5.13 0.00 35.67 2.01
142 143 5.900425 AGCACACACATTGTCAATTGTTTA 58.100 33.333 5.13 0.00 35.67 2.01
143 144 4.757594 AGCACACACATTGTCAATTGTTT 58.242 34.783 5.13 0.00 35.67 2.83
144 145 4.389890 AGCACACACATTGTCAATTGTT 57.610 36.364 5.13 0.00 35.67 2.83
145 146 4.389890 AAGCACACACATTGTCAATTGT 57.610 36.364 5.13 1.98 35.67 2.71
146 147 7.169476 TGAAATAAGCACACACATTGTCAATTG 59.831 33.333 0.00 0.00 35.67 2.32
147 148 7.169645 GTGAAATAAGCACACACATTGTCAATT 59.830 33.333 0.00 0.00 35.67 2.32
148 149 6.642131 GTGAAATAAGCACACACATTGTCAAT 59.358 34.615 0.00 0.00 35.67 2.57
149 150 5.976534 GTGAAATAAGCACACACATTGTCAA 59.023 36.000 0.00 0.00 35.67 3.18
150 151 5.067023 TGTGAAATAAGCACACACATTGTCA 59.933 36.000 0.00 0.00 41.00 3.58
151 152 5.518812 TGTGAAATAAGCACACACATTGTC 58.481 37.500 0.00 0.00 41.00 3.18
152 153 5.512753 TGTGAAATAAGCACACACATTGT 57.487 34.783 0.00 0.00 41.00 2.71
153 154 5.747675 TGTTGTGAAATAAGCACACACATTG 59.252 36.000 0.00 0.00 45.10 2.82
154 155 5.900425 TGTTGTGAAATAAGCACACACATT 58.100 33.333 0.00 0.00 45.10 2.71
155 156 5.512753 TGTTGTGAAATAAGCACACACAT 57.487 34.783 0.00 0.00 45.10 3.21
156 157 4.972514 TGTTGTGAAATAAGCACACACA 57.027 36.364 0.00 0.00 45.10 3.72
157 158 4.204168 CGTTGTTGTGAAATAAGCACACAC 59.796 41.667 0.00 0.00 45.10 3.82
158 159 4.346970 CGTTGTTGTGAAATAAGCACACA 58.653 39.130 0.00 0.00 45.10 3.72
159 160 3.179599 GCGTTGTTGTGAAATAAGCACAC 59.820 43.478 0.00 0.00 45.10 3.82
160 161 3.066064 AGCGTTGTTGTGAAATAAGCACA 59.934 39.130 0.00 0.00 43.89 4.57
161 162 3.421888 CAGCGTTGTTGTGAAATAAGCAC 59.578 43.478 0.00 0.00 36.81 4.40
162 163 3.626977 CAGCGTTGTTGTGAAATAAGCA 58.373 40.909 0.00 0.00 0.00 3.91
163 164 2.405025 GCAGCGTTGTTGTGAAATAAGC 59.595 45.455 0.00 0.00 0.00 3.09
164 165 3.888934 AGCAGCGTTGTTGTGAAATAAG 58.111 40.909 0.00 0.00 0.00 1.73
165 166 3.980646 AGCAGCGTTGTTGTGAAATAA 57.019 38.095 0.00 0.00 0.00 1.40
166 167 3.980646 AAGCAGCGTTGTTGTGAAATA 57.019 38.095 0.00 0.00 0.00 1.40
167 168 2.869233 AAGCAGCGTTGTTGTGAAAT 57.131 40.000 0.00 0.00 0.00 2.17
168 169 2.680841 AGTAAGCAGCGTTGTTGTGAAA 59.319 40.909 0.00 0.00 0.00 2.69
169 170 2.285083 AGTAAGCAGCGTTGTTGTGAA 58.715 42.857 0.00 0.00 0.00 3.18
170 171 1.948104 AGTAAGCAGCGTTGTTGTGA 58.052 45.000 0.00 0.00 0.00 3.58
171 172 2.031560 TGAAGTAAGCAGCGTTGTTGTG 59.968 45.455 0.00 0.00 0.00 3.33
172 173 2.285083 TGAAGTAAGCAGCGTTGTTGT 58.715 42.857 0.00 0.00 0.00 3.32
173 174 3.332761 TTGAAGTAAGCAGCGTTGTTG 57.667 42.857 0.00 0.00 0.00 3.33
174 175 4.364415 TTTTGAAGTAAGCAGCGTTGTT 57.636 36.364 0.00 0.00 0.00 2.83
175 176 4.364415 TTTTTGAAGTAAGCAGCGTTGT 57.636 36.364 0.00 0.00 0.00 3.32
194 195 5.007034 TCATGGACGTGTATGGACATTTTT 58.993 37.500 0.00 0.00 38.04 1.94
195 196 4.584874 TCATGGACGTGTATGGACATTTT 58.415 39.130 0.00 0.00 38.04 1.82
196 197 4.191544 CTCATGGACGTGTATGGACATTT 58.808 43.478 0.00 0.00 38.04 2.32
197 198 3.432186 CCTCATGGACGTGTATGGACATT 60.432 47.826 0.00 0.00 34.74 2.71
198 199 2.103094 CCTCATGGACGTGTATGGACAT 59.897 50.000 0.00 0.00 34.74 3.06
199 200 1.480545 CCTCATGGACGTGTATGGACA 59.519 52.381 0.00 0.00 34.57 4.02
200 201 1.806623 GCCTCATGGACGTGTATGGAC 60.807 57.143 0.00 0.00 34.57 4.02
201 202 0.464036 GCCTCATGGACGTGTATGGA 59.536 55.000 0.00 0.00 34.57 3.41
202 203 0.465705 AGCCTCATGGACGTGTATGG 59.534 55.000 0.00 0.00 34.57 2.74
203 204 1.575244 CAGCCTCATGGACGTGTATG 58.425 55.000 0.00 0.00 34.57 2.39
204 205 0.465705 CCAGCCTCATGGACGTGTAT 59.534 55.000 0.00 0.00 43.57 2.29
205 206 0.902984 ACCAGCCTCATGGACGTGTA 60.903 55.000 0.00 0.00 43.57 2.90
206 207 2.172483 GACCAGCCTCATGGACGTGT 62.172 60.000 0.00 0.00 43.57 4.49
207 208 1.448540 GACCAGCCTCATGGACGTG 60.449 63.158 0.00 0.00 43.57 4.49
208 209 1.267574 ATGACCAGCCTCATGGACGT 61.268 55.000 0.00 0.00 43.57 4.34
209 210 0.752658 TATGACCAGCCTCATGGACG 59.247 55.000 0.00 0.00 43.57 4.79
210 211 1.765314 ACTATGACCAGCCTCATGGAC 59.235 52.381 0.00 0.00 43.57 4.02
211 212 1.764723 CACTATGACCAGCCTCATGGA 59.235 52.381 0.00 0.00 43.57 3.41
212 213 1.202734 CCACTATGACCAGCCTCATGG 60.203 57.143 0.00 0.00 46.47 3.66
213 214 1.202734 CCCACTATGACCAGCCTCATG 60.203 57.143 0.00 0.00 32.86 3.07
214 215 1.135094 CCCACTATGACCAGCCTCAT 58.865 55.000 0.00 0.00 35.05 2.90
215 216 0.982852 CCCCACTATGACCAGCCTCA 60.983 60.000 0.00 0.00 0.00 3.86
216 217 0.691078 TCCCCACTATGACCAGCCTC 60.691 60.000 0.00 0.00 0.00 4.70
217 218 0.692419 CTCCCCACTATGACCAGCCT 60.692 60.000 0.00 0.00 0.00 4.58
218 219 0.983378 ACTCCCCACTATGACCAGCC 60.983 60.000 0.00 0.00 0.00 4.85
219 220 1.789523 TACTCCCCACTATGACCAGC 58.210 55.000 0.00 0.00 0.00 4.85
220 221 3.375699 AGTTACTCCCCACTATGACCAG 58.624 50.000 0.00 0.00 0.00 4.00
221 222 3.484953 AGTTACTCCCCACTATGACCA 57.515 47.619 0.00 0.00 0.00 4.02
222 223 6.781507 AGTATAAGTTACTCCCCACTATGACC 59.218 42.308 0.00 0.00 0.00 4.02
223 224 7.836479 AGTATAAGTTACTCCCCACTATGAC 57.164 40.000 0.00 0.00 0.00 3.06
224 225 8.730948 ACTAGTATAAGTTACTCCCCACTATGA 58.269 37.037 0.00 0.00 0.00 2.15
225 226 8.794553 CACTAGTATAAGTTACTCCCCACTATG 58.205 40.741 0.00 0.00 0.00 2.23
226 227 8.509441 ACACTAGTATAAGTTACTCCCCACTAT 58.491 37.037 0.00 0.00 0.00 2.12
227 228 7.876371 ACACTAGTATAAGTTACTCCCCACTA 58.124 38.462 0.00 0.00 0.00 2.74
228 229 6.739664 ACACTAGTATAAGTTACTCCCCACT 58.260 40.000 0.00 0.00 0.00 4.00
229 230 6.604795 TGACACTAGTATAAGTTACTCCCCAC 59.395 42.308 0.00 0.00 0.00 4.61
230 231 6.734532 TGACACTAGTATAAGTTACTCCCCA 58.265 40.000 0.00 0.00 0.00 4.96
231 232 7.659186 CATGACACTAGTATAAGTTACTCCCC 58.341 42.308 0.00 0.00 0.00 4.81
232 233 7.146648 GCATGACACTAGTATAAGTTACTCCC 58.853 42.308 0.00 0.00 0.00 4.30
233 234 7.713750 TGCATGACACTAGTATAAGTTACTCC 58.286 38.462 0.00 0.00 0.00 3.85
252 253 7.588497 ACTTAGACTAGTGTCATATGCATGA 57.412 36.000 10.16 0.00 45.20 3.07
253 254 9.186323 GTAACTTAGACTAGTGTCATATGCATG 57.814 37.037 10.16 0.00 45.20 4.06
254 255 9.137459 AGTAACTTAGACTAGTGTCATATGCAT 57.863 33.333 3.79 3.79 45.20 3.96
255 256 8.521170 AGTAACTTAGACTAGTGTCATATGCA 57.479 34.615 0.00 0.00 45.20 3.96
256 257 9.881529 GTAGTAACTTAGACTAGTGTCATATGC 57.118 37.037 0.00 0.00 45.20 3.14
260 261 9.122779 GGATGTAGTAACTTAGACTAGTGTCAT 57.877 37.037 0.00 0.00 45.20 3.06
261 262 8.105197 TGGATGTAGTAACTTAGACTAGTGTCA 58.895 37.037 0.00 0.00 45.20 3.58
262 263 8.503458 TGGATGTAGTAACTTAGACTAGTGTC 57.497 38.462 0.00 0.00 43.22 3.67
267 268 9.064706 GCACTATGGATGTAGTAACTTAGACTA 57.935 37.037 0.00 0.00 33.29 2.59
268 269 7.560262 TGCACTATGGATGTAGTAACTTAGACT 59.440 37.037 0.00 0.00 33.29 3.24
269 270 7.713750 TGCACTATGGATGTAGTAACTTAGAC 58.286 38.462 0.00 0.00 33.29 2.59
270 271 7.891498 TGCACTATGGATGTAGTAACTTAGA 57.109 36.000 0.00 0.00 33.29 2.10
271 272 8.942338 TTTGCACTATGGATGTAGTAACTTAG 57.058 34.615 0.00 0.00 33.29 2.18
272 273 8.537016 ACTTTGCACTATGGATGTAGTAACTTA 58.463 33.333 0.00 0.00 33.29 2.24
273 274 7.394816 ACTTTGCACTATGGATGTAGTAACTT 58.605 34.615 0.00 0.00 33.29 2.66
274 275 6.947464 ACTTTGCACTATGGATGTAGTAACT 58.053 36.000 0.00 0.00 33.29 2.24
275 276 8.888579 ATACTTTGCACTATGGATGTAGTAAC 57.111 34.615 0.00 0.00 33.29 2.50
276 277 8.924303 AGATACTTTGCACTATGGATGTAGTAA 58.076 33.333 0.00 0.00 33.29 2.24
277 278 8.478775 AGATACTTTGCACTATGGATGTAGTA 57.521 34.615 0.00 0.00 33.29 1.82
278 279 7.366847 AGATACTTTGCACTATGGATGTAGT 57.633 36.000 0.00 0.00 35.34 2.73
279 280 9.416794 CTAAGATACTTTGCACTATGGATGTAG 57.583 37.037 0.00 0.00 0.00 2.74
280 281 8.924303 ACTAAGATACTTTGCACTATGGATGTA 58.076 33.333 0.00 0.00 0.00 2.29
281 282 7.796054 ACTAAGATACTTTGCACTATGGATGT 58.204 34.615 0.00 0.00 0.00 3.06
282 283 9.416794 CTACTAAGATACTTTGCACTATGGATG 57.583 37.037 0.00 0.00 0.00 3.51
283 284 9.148879 ACTACTAAGATACTTTGCACTATGGAT 57.851 33.333 0.00 0.00 0.00 3.41
284 285 8.534954 ACTACTAAGATACTTTGCACTATGGA 57.465 34.615 0.00 0.00 0.00 3.41
285 286 9.900710 CTACTACTAAGATACTTTGCACTATGG 57.099 37.037 0.00 0.00 0.00 2.74
288 289 9.458727 ACACTACTACTAAGATACTTTGCACTA 57.541 33.333 0.00 0.00 0.00 2.74
289 290 8.350852 ACACTACTACTAAGATACTTTGCACT 57.649 34.615 0.00 0.00 0.00 4.40
290 291 8.242053 TGACACTACTACTAAGATACTTTGCAC 58.758 37.037 0.00 0.00 0.00 4.57
291 292 8.344446 TGACACTACTACTAAGATACTTTGCA 57.656 34.615 0.00 0.00 0.00 4.08
335 336 8.838365 TCTCGAGGTAAATTGAGTCTATAAGAC 58.162 37.037 13.56 0.00 45.38 3.01
336 337 8.975663 TCTCGAGGTAAATTGAGTCTATAAGA 57.024 34.615 13.56 0.00 33.15 2.10
337 338 9.672086 CTTCTCGAGGTAAATTGAGTCTATAAG 57.328 37.037 13.56 0.00 33.15 1.73
338 339 8.136165 GCTTCTCGAGGTAAATTGAGTCTATAA 58.864 37.037 13.56 0.00 33.15 0.98
339 340 7.520131 CGCTTCTCGAGGTAAATTGAGTCTATA 60.520 40.741 13.56 0.00 41.67 1.31
340 341 6.508777 GCTTCTCGAGGTAAATTGAGTCTAT 58.491 40.000 13.56 0.00 33.15 1.98
341 342 5.448768 CGCTTCTCGAGGTAAATTGAGTCTA 60.449 44.000 13.56 0.00 41.67 2.59
342 343 4.675671 CGCTTCTCGAGGTAAATTGAGTCT 60.676 45.833 13.56 0.00 41.67 3.24
343 344 3.548268 CGCTTCTCGAGGTAAATTGAGTC 59.452 47.826 13.56 0.00 41.67 3.36
344 345 3.512680 CGCTTCTCGAGGTAAATTGAGT 58.487 45.455 13.56 0.00 41.67 3.41
345 346 2.282820 GCGCTTCTCGAGGTAAATTGAG 59.717 50.000 13.56 0.00 41.67 3.02
346 347 2.094182 AGCGCTTCTCGAGGTAAATTGA 60.094 45.455 13.56 0.00 41.67 2.57
347 348 2.271800 AGCGCTTCTCGAGGTAAATTG 58.728 47.619 13.56 0.00 41.67 2.32
348 349 2.674796 AGCGCTTCTCGAGGTAAATT 57.325 45.000 13.56 0.00 41.67 1.82
349 350 3.068307 ACATAGCGCTTCTCGAGGTAAAT 59.932 43.478 18.68 0.00 41.67 1.40
350 351 2.426024 ACATAGCGCTTCTCGAGGTAAA 59.574 45.455 18.68 0.00 41.67 2.01
351 352 2.022195 ACATAGCGCTTCTCGAGGTAA 58.978 47.619 18.68 0.00 41.67 2.85
352 353 1.676746 ACATAGCGCTTCTCGAGGTA 58.323 50.000 18.68 0.00 41.67 3.08
353 354 0.818296 AACATAGCGCTTCTCGAGGT 59.182 50.000 18.68 0.62 41.67 3.85
354 355 2.223502 TGTAACATAGCGCTTCTCGAGG 60.224 50.000 18.68 0.00 41.67 4.63
355 356 3.039405 CTGTAACATAGCGCTTCTCGAG 58.961 50.000 18.68 5.93 41.67 4.04
356 357 2.422479 ACTGTAACATAGCGCTTCTCGA 59.578 45.455 18.68 0.00 41.67 4.04
357 358 2.798680 ACTGTAACATAGCGCTTCTCG 58.201 47.619 18.68 4.15 42.12 4.04
358 359 5.100259 TGTTACTGTAACATAGCGCTTCTC 58.900 41.667 25.14 1.35 43.23 2.87
359 360 5.068234 TGTTACTGTAACATAGCGCTTCT 57.932 39.130 25.14 0.00 43.23 2.85
373 374 9.609346 GTTTGGAGTACCATAATATGTTACTGT 57.391 33.333 13.97 0.66 46.34 3.55
374 375 9.607988 TGTTTGGAGTACCATAATATGTTACTG 57.392 33.333 13.97 0.00 46.34 2.74
375 376 9.609346 GTGTTTGGAGTACCATAATATGTTACT 57.391 33.333 9.75 9.75 46.34 2.24
376 377 8.833493 GGTGTTTGGAGTACCATAATATGTTAC 58.167 37.037 0.38 0.38 46.34 2.50
377 378 8.774183 AGGTGTTTGGAGTACCATAATATGTTA 58.226 33.333 0.00 0.00 46.34 2.41
378 379 7.639378 AGGTGTTTGGAGTACCATAATATGTT 58.361 34.615 0.00 0.00 46.34 2.71
379 380 7.127339 AGAGGTGTTTGGAGTACCATAATATGT 59.873 37.037 0.00 0.00 46.34 2.29
380 381 7.509546 AGAGGTGTTTGGAGTACCATAATATG 58.490 38.462 0.00 0.00 46.34 1.78
381 382 7.569111 AGAGAGGTGTTTGGAGTACCATAATAT 59.431 37.037 0.00 0.00 46.34 1.28
382 383 6.901300 AGAGAGGTGTTTGGAGTACCATAATA 59.099 38.462 0.00 0.00 46.34 0.98
383 384 5.726793 AGAGAGGTGTTTGGAGTACCATAAT 59.273 40.000 0.00 0.00 46.34 1.28
384 385 5.091552 AGAGAGGTGTTTGGAGTACCATAA 58.908 41.667 0.00 0.00 46.34 1.90
385 386 4.684724 AGAGAGGTGTTTGGAGTACCATA 58.315 43.478 0.00 0.00 46.34 2.74
386 387 3.515901 GAGAGAGGTGTTTGGAGTACCAT 59.484 47.826 0.00 0.00 46.34 3.55
387 388 2.897969 GAGAGAGGTGTTTGGAGTACCA 59.102 50.000 0.00 0.00 45.34 3.25
388 389 2.234168 GGAGAGAGGTGTTTGGAGTACC 59.766 54.545 0.00 0.00 34.68 3.34
389 390 3.166679 AGGAGAGAGGTGTTTGGAGTAC 58.833 50.000 0.00 0.00 0.00 2.73
390 391 3.181422 TGAGGAGAGAGGTGTTTGGAGTA 60.181 47.826 0.00 0.00 0.00 2.59
391 392 2.252714 GAGGAGAGAGGTGTTTGGAGT 58.747 52.381 0.00 0.00 0.00 3.85
392 393 2.251818 TGAGGAGAGAGGTGTTTGGAG 58.748 52.381 0.00 0.00 0.00 3.86
393 394 2.398754 TGAGGAGAGAGGTGTTTGGA 57.601 50.000 0.00 0.00 0.00 3.53
394 395 3.710209 AATGAGGAGAGAGGTGTTTGG 57.290 47.619 0.00 0.00 0.00 3.28
395 396 8.043710 AGTATTTAATGAGGAGAGAGGTGTTTG 58.956 37.037 0.00 0.00 0.00 2.93
396 397 8.152023 AGTATTTAATGAGGAGAGAGGTGTTT 57.848 34.615 0.00 0.00 0.00 2.83
397 398 7.741554 AGTATTTAATGAGGAGAGAGGTGTT 57.258 36.000 0.00 0.00 0.00 3.32
398 399 7.560368 CAAGTATTTAATGAGGAGAGAGGTGT 58.440 38.462 0.00 0.00 0.00 4.16
399 400 6.481644 GCAAGTATTTAATGAGGAGAGAGGTG 59.518 42.308 0.00 0.00 0.00 4.00
400 401 6.408662 GGCAAGTATTTAATGAGGAGAGAGGT 60.409 42.308 0.00 0.00 0.00 3.85
401 402 5.994668 GGCAAGTATTTAATGAGGAGAGAGG 59.005 44.000 0.00 0.00 0.00 3.69
402 403 6.481644 GTGGCAAGTATTTAATGAGGAGAGAG 59.518 42.308 0.00 0.00 0.00 3.20
403 404 6.070251 TGTGGCAAGTATTTAATGAGGAGAGA 60.070 38.462 0.00 0.00 0.00 3.10
404 405 6.115446 TGTGGCAAGTATTTAATGAGGAGAG 58.885 40.000 0.00 0.00 0.00 3.20
405 406 6.061022 TGTGGCAAGTATTTAATGAGGAGA 57.939 37.500 0.00 0.00 0.00 3.71
406 407 6.949352 ATGTGGCAAGTATTTAATGAGGAG 57.051 37.500 0.00 0.00 0.00 3.69
407 408 8.052748 ACTTATGTGGCAAGTATTTAATGAGGA 58.947 33.333 0.00 0.00 34.50 3.71
408 409 8.225603 ACTTATGTGGCAAGTATTTAATGAGG 57.774 34.615 0.00 0.00 34.50 3.86
415 416 9.243105 ACAATTCTACTTATGTGGCAAGTATTT 57.757 29.630 0.00 0.00 37.73 1.40
416 417 8.807948 ACAATTCTACTTATGTGGCAAGTATT 57.192 30.769 0.00 0.00 37.73 1.89
417 418 8.807948 AACAATTCTACTTATGTGGCAAGTAT 57.192 30.769 0.00 0.00 37.73 2.12
418 419 8.630054 AAACAATTCTACTTATGTGGCAAGTA 57.370 30.769 0.00 0.00 37.42 2.24
419 420 7.524717 AAACAATTCTACTTATGTGGCAAGT 57.475 32.000 0.00 0.00 39.50 3.16
420 421 7.329226 CCAAAACAATTCTACTTATGTGGCAAG 59.671 37.037 0.00 0.00 0.00 4.01
421 422 7.151308 CCAAAACAATTCTACTTATGTGGCAA 58.849 34.615 0.00 0.00 0.00 4.52
422 423 6.295011 CCCAAAACAATTCTACTTATGTGGCA 60.295 38.462 0.00 0.00 0.00 4.92
423 424 6.099341 CCCAAAACAATTCTACTTATGTGGC 58.901 40.000 0.00 0.00 0.00 5.01
424 425 6.210584 ACCCCAAAACAATTCTACTTATGTGG 59.789 38.462 0.00 0.00 0.00 4.17
425 426 7.090173 CACCCCAAAACAATTCTACTTATGTG 58.910 38.462 0.00 0.00 0.00 3.21
426 427 6.780522 ACACCCCAAAACAATTCTACTTATGT 59.219 34.615 0.00 0.00 0.00 2.29
427 428 7.090173 CACACCCCAAAACAATTCTACTTATG 58.910 38.462 0.00 0.00 0.00 1.90
428 429 6.780522 ACACACCCCAAAACAATTCTACTTAT 59.219 34.615 0.00 0.00 0.00 1.73
429 430 6.130569 ACACACCCCAAAACAATTCTACTTA 58.869 36.000 0.00 0.00 0.00 2.24
430 431 4.959839 ACACACCCCAAAACAATTCTACTT 59.040 37.500 0.00 0.00 0.00 2.24
431 432 4.542697 ACACACCCCAAAACAATTCTACT 58.457 39.130 0.00 0.00 0.00 2.57
432 433 4.929819 ACACACCCCAAAACAATTCTAC 57.070 40.909 0.00 0.00 0.00 2.59
433 434 6.608002 ACTTAACACACCCCAAAACAATTCTA 59.392 34.615 0.00 0.00 0.00 2.10
434 435 5.423931 ACTTAACACACCCCAAAACAATTCT 59.576 36.000 0.00 0.00 0.00 2.40
435 436 5.666462 ACTTAACACACCCCAAAACAATTC 58.334 37.500 0.00 0.00 0.00 2.17
436 437 5.685520 ACTTAACACACCCCAAAACAATT 57.314 34.783 0.00 0.00 0.00 2.32
437 438 5.685520 AACTTAACACACCCCAAAACAAT 57.314 34.783 0.00 0.00 0.00 2.71
438 439 5.715753 AGTAACTTAACACACCCCAAAACAA 59.284 36.000 0.00 0.00 0.00 2.83
439 440 5.262804 AGTAACTTAACACACCCCAAAACA 58.737 37.500 0.00 0.00 0.00 2.83
440 441 5.840243 AGTAACTTAACACACCCCAAAAC 57.160 39.130 0.00 0.00 0.00 2.43
441 442 6.661777 AGTAGTAACTTAACACACCCCAAAA 58.338 36.000 0.00 0.00 29.00 2.44
442 443 6.251255 AGTAGTAACTTAACACACCCCAAA 57.749 37.500 0.00 0.00 29.00 3.28
443 444 5.892524 AGTAGTAACTTAACACACCCCAA 57.107 39.130 0.00 0.00 29.00 4.12
444 445 5.892524 AAGTAGTAACTTAACACACCCCA 57.107 39.130 0.00 0.00 44.26 4.96
458 459 9.136323 GCCATAGTAGGGTAACTTAAGTAGTAA 57.864 37.037 8.92 0.00 35.54 2.24
459 460 8.506083 AGCCATAGTAGGGTAACTTAAGTAGTA 58.494 37.037 8.92 0.00 37.68 1.82
460 461 7.360643 AGCCATAGTAGGGTAACTTAAGTAGT 58.639 38.462 8.92 0.00 37.68 2.73
461 462 7.836479 AGCCATAGTAGGGTAACTTAAGTAG 57.164 40.000 8.92 0.00 37.68 2.57
462 463 7.449704 GCTAGCCATAGTAGGGTAACTTAAGTA 59.550 40.741 8.92 0.00 40.80 2.24
463 464 6.267242 GCTAGCCATAGTAGGGTAACTTAAGT 59.733 42.308 2.29 1.12 40.80 2.24
464 465 6.295180 GGCTAGCCATAGTAGGGTAACTTAAG 60.295 46.154 29.33 0.00 40.80 1.85
465 466 5.541484 GGCTAGCCATAGTAGGGTAACTTAA 59.459 44.000 29.33 0.00 40.80 1.85
466 467 5.082425 GGCTAGCCATAGTAGGGTAACTTA 58.918 45.833 29.33 0.00 40.80 2.24
467 468 3.902467 GGCTAGCCATAGTAGGGTAACTT 59.098 47.826 29.33 0.00 40.80 2.66
468 469 3.142407 AGGCTAGCCATAGTAGGGTAACT 59.858 47.826 34.70 6.54 40.80 2.24
469 470 3.258622 CAGGCTAGCCATAGTAGGGTAAC 59.741 52.174 34.70 3.04 40.80 2.50
470 471 3.141460 TCAGGCTAGCCATAGTAGGGTAA 59.859 47.826 34.70 4.51 40.80 2.85
471 472 2.720254 TCAGGCTAGCCATAGTAGGGTA 59.280 50.000 34.70 5.20 40.47 3.69
472 473 1.503784 TCAGGCTAGCCATAGTAGGGT 59.496 52.381 34.70 8.63 43.00 4.34
473 474 2.310779 TCAGGCTAGCCATAGTAGGG 57.689 55.000 34.70 13.23 38.92 3.53
474 475 3.169099 ACATCAGGCTAGCCATAGTAGG 58.831 50.000 34.70 17.99 38.92 3.18
475 476 4.881019 AACATCAGGCTAGCCATAGTAG 57.119 45.455 34.70 20.31 38.92 2.57
476 477 4.901849 AGAAACATCAGGCTAGCCATAGTA 59.098 41.667 34.70 15.33 38.92 1.82
477 478 3.713764 AGAAACATCAGGCTAGCCATAGT 59.286 43.478 34.70 22.96 38.92 2.12
478 479 4.348863 AGAAACATCAGGCTAGCCATAG 57.651 45.455 34.70 23.07 38.92 2.23
479 480 5.147767 TCTAGAAACATCAGGCTAGCCATA 58.852 41.667 34.70 22.27 38.92 2.74
480 481 3.969976 TCTAGAAACATCAGGCTAGCCAT 59.030 43.478 34.70 18.34 38.92 4.40
481 482 3.374764 TCTAGAAACATCAGGCTAGCCA 58.625 45.455 34.70 16.70 38.92 4.75
482 483 4.408182 TTCTAGAAACATCAGGCTAGCC 57.592 45.455 27.19 27.19 32.41 3.93
483 484 4.994217 GGATTCTAGAAACATCAGGCTAGC 59.006 45.833 9.71 6.04 32.41 3.42
484 485 6.166984 TGGATTCTAGAAACATCAGGCTAG 57.833 41.667 9.71 0.00 33.37 3.42
485 486 6.070251 TGTTGGATTCTAGAAACATCAGGCTA 60.070 38.462 9.71 0.00 0.00 3.93
486 487 5.189180 GTTGGATTCTAGAAACATCAGGCT 58.811 41.667 9.71 0.00 0.00 4.58
487 488 4.943705 TGTTGGATTCTAGAAACATCAGGC 59.056 41.667 9.71 4.16 0.00 4.85
488 489 6.600822 ACATGTTGGATTCTAGAAACATCAGG 59.399 38.462 21.72 21.72 40.36 3.86
489 490 7.470079 CACATGTTGGATTCTAGAAACATCAG 58.530 38.462 14.76 9.41 40.36 2.90
520 521 1.743623 CACATTAAGCCGACCCGCA 60.744 57.895 0.00 0.00 0.00 5.69
525 526 4.809426 ACAGCTTATACACATTAAGCCGAC 59.191 41.667 10.83 0.00 45.17 4.79
543 544 1.462616 TTGTTCAGCAACACACAGCT 58.537 45.000 0.00 0.00 42.46 4.24
570 571 4.142622 CGATAAACGGTAGTATATGCCCGA 60.143 45.833 13.74 0.00 43.01 5.14
611 612 2.223112 CGCACTTGAAATTATGCTCGCT 60.223 45.455 0.00 0.00 35.88 4.93
616 618 2.163412 TCCCACGCACTTGAAATTATGC 59.837 45.455 0.00 0.00 34.66 3.14
803 808 1.154413 CGCTGGCGTACTTTTGCTG 60.154 57.895 6.83 0.00 34.35 4.41
916 922 1.304134 TGCCTGGCTCTAGTCGACA 60.304 57.895 21.03 2.84 0.00 4.35
971 977 1.079956 CTCTCGCTGCTGCTTCAGT 60.080 57.895 14.03 0.00 36.49 3.41
995 1001 0.740868 CGACGGCACCATCATCTTGT 60.741 55.000 0.00 0.00 0.00 3.16
1074 1080 3.717830 CAAGCATGTACGTACGTTGTTC 58.282 45.455 27.92 14.61 0.00 3.18
1129 1135 1.294659 CGCCAAAGCTCTCTGACCAC 61.295 60.000 0.00 0.00 36.60 4.16
1157 1164 0.654683 CTGATTTAGCTGCACGGCTC 59.345 55.000 7.36 0.00 42.97 4.70
1250 1267 2.934553 TGCAGAGAAGCGAAGAATGATG 59.065 45.455 0.00 0.00 37.31 3.07
1456 1473 5.046014 AGACAGCAAGATGAAGACTAACCAT 60.046 40.000 0.00 0.00 0.00 3.55
1491 1508 1.747709 CTGATGAAGAAGGTGCCAGG 58.252 55.000 0.00 0.00 0.00 4.45
1492 1509 1.093159 GCTGATGAAGAAGGTGCCAG 58.907 55.000 0.00 0.00 0.00 4.85
1495 1512 2.399916 AGAGCTGATGAAGAAGGTGC 57.600 50.000 0.00 0.00 0.00 5.01
1527 1544 1.748493 TCCGGCCATTCTGTTTATTGC 59.252 47.619 2.24 0.00 0.00 3.56
1534 1551 0.321653 GTTGACTCCGGCCATTCTGT 60.322 55.000 2.24 0.00 0.00 3.41
1537 1554 1.648467 GCTGTTGACTCCGGCCATTC 61.648 60.000 2.24 0.00 0.00 2.67
1555 1572 1.446966 GTCTGAAGGCTGGAGTCGC 60.447 63.158 0.00 0.00 0.00 5.19
1557 1574 0.248843 CAGGTCTGAAGGCTGGAGTC 59.751 60.000 0.00 0.00 0.00 3.36
1559 1576 0.536260 CTCAGGTCTGAAGGCTGGAG 59.464 60.000 2.13 0.00 39.39 3.86
1597 1614 3.822167 TGGAATCGTAAGTTTGAAACCCC 59.178 43.478 4.14 0.00 39.48 4.95
1631 1648 0.523072 CAGTGTTGCACCTGGTATGC 59.477 55.000 0.00 0.00 43.68 3.14
1640 1657 0.396811 AGGGTCCTACAGTGTTGCAC 59.603 55.000 0.00 0.00 34.10 4.57
1647 1664 4.099573 CGAACATCATAAGGGTCCTACAGT 59.900 45.833 0.00 0.00 0.00 3.55
1651 1668 2.367567 GGCGAACATCATAAGGGTCCTA 59.632 50.000 0.00 0.00 0.00 2.94
1653 1670 1.134220 TGGCGAACATCATAAGGGTCC 60.134 52.381 0.00 0.00 0.00 4.46
1654 1671 2.325583 TGGCGAACATCATAAGGGTC 57.674 50.000 0.00 0.00 0.00 4.46
1785 1802 1.337384 ACTCCATAGATGGCGTGGCA 61.337 55.000 3.37 0.00 43.72 4.92
2013 2030 3.525609 TGGTAGGGAATGAGCAATAACCA 59.474 43.478 0.00 0.00 32.30 3.67
2154 2173 5.172460 GGCTAGGTCTAGACTTTTACTCG 57.828 47.826 21.88 7.83 38.18 4.18
2166 2189 4.621797 AAAGGGAGTTAGGCTAGGTCTA 57.378 45.455 0.00 0.00 0.00 2.59
2399 2429 6.591935 AGTTCAGGACTTAGTTCACAAATCA 58.408 36.000 0.00 0.00 33.92 2.57
2455 2485 1.337447 CCAACTGCAATTGAGGCCTTG 60.337 52.381 9.94 1.17 0.00 3.61
2456 2486 0.971386 CCAACTGCAATTGAGGCCTT 59.029 50.000 9.94 0.00 0.00 4.35
2856 2887 5.047188 GGAGCAGCTAGTTCAAGAGATTAC 58.953 45.833 0.00 0.00 0.00 1.89
2889 2920 2.564062 CACATTTTCCTGTCCCTGCATT 59.436 45.455 0.00 0.00 0.00 3.56
2893 2924 3.146104 ACTCACATTTTCCTGTCCCTG 57.854 47.619 0.00 0.00 0.00 4.45
2927 2958 7.485418 TTTTCACGCTGTTTCTACTTAATCA 57.515 32.000 0.00 0.00 0.00 2.57
3000 3051 5.007385 ACAATCCACTCACGTCCTTATAC 57.993 43.478 0.00 0.00 0.00 1.47
3037 3088 4.764308 TGCATTGCAATTAACTCCTACACA 59.236 37.500 9.83 0.00 34.76 3.72
3108 3159 5.673337 TGTCTGCAGAATTTGTAGTTGAC 57.327 39.130 20.19 2.23 40.11 3.18
3310 3361 4.069304 TCTTTTCCCTTGTATTGGTCACG 58.931 43.478 0.00 0.00 0.00 4.35
3616 3667 7.869937 ACTATTTCATCCTCAGATATCGTGTTG 59.130 37.037 0.00 0.00 0.00 3.33
3802 3853 6.163476 TGACGTAATTGAATAGTCTTGCACT 58.837 36.000 0.00 0.00 39.41 4.40
3832 3883 6.942976 TCGGTTCATTACACTCCTTAAATCT 58.057 36.000 0.00 0.00 0.00 2.40
3889 3940 9.209048 TGCCTTAGAGTTAGGAACATCTAATAA 57.791 33.333 0.00 0.00 34.14 1.40
3890 3941 8.777578 TGCCTTAGAGTTAGGAACATCTAATA 57.222 34.615 0.00 2.41 34.14 0.98
4057 4127 9.892130 CCCTCTGTAAAGAAATATAAGAGTGTT 57.108 33.333 0.00 0.00 0.00 3.32
4058 4128 9.268282 TCCCTCTGTAAAGAAATATAAGAGTGT 57.732 33.333 0.00 0.00 0.00 3.55
4059 4129 9.757227 CTCCCTCTGTAAAGAAATATAAGAGTG 57.243 37.037 0.00 0.00 0.00 3.51
4060 4130 9.495382 ACTCCCTCTGTAAAGAAATATAAGAGT 57.505 33.333 0.00 0.00 0.00 3.24
4066 4136 9.268282 TGAAGTACTCCCTCTGTAAAGAAATAT 57.732 33.333 0.00 0.00 0.00 1.28
4067 4137 8.529476 GTGAAGTACTCCCTCTGTAAAGAAATA 58.471 37.037 0.00 0.00 0.00 1.40
4068 4138 7.016268 TGTGAAGTACTCCCTCTGTAAAGAAAT 59.984 37.037 0.00 0.00 0.00 2.17
4069 4139 6.325545 TGTGAAGTACTCCCTCTGTAAAGAAA 59.674 38.462 0.00 0.00 0.00 2.52
4070 4140 5.836898 TGTGAAGTACTCCCTCTGTAAAGAA 59.163 40.000 0.00 0.00 0.00 2.52
4071 4141 5.391256 TGTGAAGTACTCCCTCTGTAAAGA 58.609 41.667 0.00 0.00 0.00 2.52
4072 4142 5.723672 TGTGAAGTACTCCCTCTGTAAAG 57.276 43.478 0.00 0.00 0.00 1.85
4073 4143 6.488769 TTTGTGAAGTACTCCCTCTGTAAA 57.511 37.500 0.00 0.00 0.00 2.01
4074 4144 6.488769 TTTTGTGAAGTACTCCCTCTGTAA 57.511 37.500 0.00 0.00 0.00 2.41
4285 4480 1.667724 CGACCAGTGGCATTGATTCTC 59.332 52.381 9.78 0.00 0.00 2.87
4509 4704 9.868277 GAACTGCTATTCTCATACAATATAGCT 57.132 33.333 12.08 0.00 42.47 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.