Multiple sequence alignment - TraesCS5A01G138900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G138900 chr5A 100.000 4020 0 0 1 4020 311123506 311127525 0.000000e+00 7424.0
1 TraesCS5A01G138900 chr5D 87.859 1878 134 38 28 1841 241357088 241358935 0.000000e+00 2119.0
2 TraesCS5A01G138900 chr5D 91.849 1190 51 10 2328 3517 241359358 241360501 0.000000e+00 1618.0
3 TraesCS5A01G138900 chr5D 97.131 244 6 1 1912 2154 241358935 241359178 1.040000e-110 411.0
4 TraesCS5A01G138900 chr5D 94.702 151 7 1 2154 2304 241359214 241359363 2.420000e-57 233.0
5 TraesCS5A01G138900 chr5D 89.855 138 11 3 3870 4006 87844311 87844446 1.490000e-39 174.0
6 TraesCS5A01G138900 chr5B 95.318 1303 50 4 2328 3630 262305123 262303832 0.000000e+00 2058.0
7 TraesCS5A01G138900 chr5B 90.436 1171 44 19 734 1844 262306721 262305559 0.000000e+00 1480.0
8 TraesCS5A01G138900 chr5B 88.208 424 17 6 3630 4020 523185225 523185648 3.640000e-130 475.0
9 TraesCS5A01G138900 chr5B 87.032 401 39 8 3627 4018 63618316 63617920 1.330000e-119 440.0
10 TraesCS5A01G138900 chr5B 87.984 258 10 3 1918 2154 262305560 262305303 6.580000e-73 285.0
11 TraesCS5A01G138900 chr5B 94.040 151 8 1 2154 2304 262305267 262305118 1.120000e-55 228.0
12 TraesCS5A01G138900 chr4A 98.724 392 3 2 3630 4020 618470495 618470105 0.000000e+00 695.0
13 TraesCS5A01G138900 chr7A 98.237 397 5 2 3626 4020 720939341 720938945 0.000000e+00 693.0
14 TraesCS5A01G138900 chr1B 90.976 410 15 2 3633 4020 488470821 488470412 2.130000e-147 532.0
15 TraesCS5A01G138900 chr1D 83.333 408 38 18 3635 4018 386374948 386374547 2.300000e-92 350.0
16 TraesCS5A01G138900 chr1A 82.410 415 45 17 3625 4015 575155901 575156311 1.790000e-88 337.0
17 TraesCS5A01G138900 chrUn 86.218 312 21 2 3731 4020 342301596 342301907 6.480000e-83 318.0
18 TraesCS5A01G138900 chrUn 85.897 312 22 2 3731 4020 342304082 342304393 3.020000e-81 313.0
19 TraesCS5A01G138900 chr7D 86.702 188 19 5 3839 4020 514339356 514339169 1.890000e-48 204.0
20 TraesCS5A01G138900 chr3B 93.519 108 7 0 3629 3736 824961165 824961272 1.160000e-35 161.0
21 TraesCS5A01G138900 chr3B 92.727 55 3 1 3574 3628 145904674 145904727 1.200000e-10 78.7
22 TraesCS5A01G138900 chr3B 93.478 46 3 0 176 221 728063610 728063565 7.210000e-08 69.4
23 TraesCS5A01G138900 chr3B 94.872 39 1 1 3574 3612 145950371 145950408 4.340000e-05 60.2
24 TraesCS5A01G138900 chr3A 93.103 58 3 1 3574 3631 549421631 549421687 2.570000e-12 84.2
25 TraesCS5A01G138900 chr3D 92.727 55 3 1 3574 3628 94847028 94847081 1.200000e-10 78.7
26 TraesCS5A01G138900 chr3D 93.333 45 3 0 177 221 548812935 548812891 2.590000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G138900 chr5A 311123506 311127525 4019 False 7424.00 7424 100.00000 1 4020 1 chr5A.!!$F1 4019
1 TraesCS5A01G138900 chr5D 241357088 241360501 3413 False 1095.25 2119 92.88525 28 3517 4 chr5D.!!$F2 3489
2 TraesCS5A01G138900 chr5B 262303832 262306721 2889 True 1012.75 2058 91.94450 734 3630 4 chr5B.!!$R2 2896
3 TraesCS5A01G138900 chrUn 342301596 342304393 2797 False 315.50 318 86.05750 3731 4020 2 chrUn.!!$F1 289

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
22 23 0.036388 AGGGTTCAATGATGACGCGT 60.036 50.0 13.85 13.85 34.61 6.01 F
1181 1222 0.037877 TCTTTCTCTCGGAGGGTCGT 59.962 55.0 4.52 0.00 0.00 4.34 F
1690 1779 0.250513 GATCCTGCTCGACCTGGTTT 59.749 55.0 0.00 0.00 0.00 3.27 F
2776 2923 0.107831 TTACAGCCAAGGACGCAACT 59.892 50.0 0.00 0.00 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1615 1704 0.245539 TCATCGGTTCCGACCTTGTC 59.754 55.0 16.22 0.00 44.20 3.18 R
2747 2894 0.116143 TTGGCTGTAAAAGGGCCCAT 59.884 50.0 27.56 10.06 44.71 4.00 R
2875 3022 0.669625 GCTTCGGCGGAGTGTACTTT 60.670 55.0 17.90 0.00 0.00 2.66 R
3702 3852 0.108424 ACCAGCGCAGATCTCAGAAC 60.108 55.0 11.47 0.00 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.083774 TCAAGGGTTCAATGATGACGC 58.916 47.619 0.00 0.00 34.61 5.19
21 22 1.086696 AAGGGTTCAATGATGACGCG 58.913 50.000 3.53 3.53 34.61 6.01
22 23 0.036388 AGGGTTCAATGATGACGCGT 60.036 50.000 13.85 13.85 34.61 6.01
23 24 0.096976 GGGTTCAATGATGACGCGTG 59.903 55.000 20.70 0.00 34.61 5.34
24 25 0.521242 GGTTCAATGATGACGCGTGC 60.521 55.000 20.70 9.34 34.61 5.34
25 26 0.853224 GTTCAATGATGACGCGTGCG 60.853 55.000 20.70 13.39 46.03 5.34
26 27 1.011451 TTCAATGATGACGCGTGCGA 61.011 50.000 20.70 0.00 42.83 5.10
30 31 1.014044 ATGATGACGCGTGCGACTTT 61.014 50.000 20.70 6.84 42.83 2.66
59 60 0.747255 GCATGGAGACTTCTCGGCTA 59.253 55.000 0.00 0.00 43.76 3.93
65 66 4.470602 TGGAGACTTCTCGGCTATTATCA 58.529 43.478 0.13 0.00 43.76 2.15
67 68 5.221263 TGGAGACTTCTCGGCTATTATCAAC 60.221 44.000 0.13 0.00 43.76 3.18
72 73 4.336889 TCTCGGCTATTATCAACAAGGG 57.663 45.455 0.00 0.00 0.00 3.95
78 79 3.243535 GCTATTATCAACAAGGGCAAGCC 60.244 47.826 1.52 1.52 0.00 4.35
85 86 2.037136 CAAGGGCAAGCCGACTCTG 61.037 63.158 4.80 0.00 36.85 3.35
86 87 2.217038 AAGGGCAAGCCGACTCTGA 61.217 57.895 4.80 0.00 36.85 3.27
89 90 0.249657 GGGCAAGCCGACTCTGATAG 60.250 60.000 4.80 0.00 36.85 2.08
90 91 0.249657 GGCAAGCCGACTCTGATAGG 60.250 60.000 0.00 0.00 0.00 2.57
93 94 2.544069 GCAAGCCGACTCTGATAGGTAC 60.544 54.545 0.00 0.00 0.00 3.34
94 95 2.688446 CAAGCCGACTCTGATAGGTACA 59.312 50.000 0.00 0.00 0.00 2.90
95 96 3.231207 AGCCGACTCTGATAGGTACAT 57.769 47.619 0.00 0.00 0.00 2.29
96 97 2.887783 AGCCGACTCTGATAGGTACATG 59.112 50.000 0.00 0.00 0.00 3.21
97 98 2.029828 GCCGACTCTGATAGGTACATGG 60.030 54.545 0.00 0.00 0.00 3.66
113 114 3.554692 GGCAACATCGACGCCTCG 61.555 66.667 9.17 0.00 42.78 4.63
150 152 0.094730 GTAATGCTCGTTCGTGGCAC 59.905 55.000 7.79 7.79 38.83 5.01
167 169 3.245229 TGGCACAAGGTCCTCAATGTAAT 60.245 43.478 0.00 0.00 31.92 1.89
201 203 7.944729 ATGTCTATGGTGCTTTGTATTTCTT 57.055 32.000 0.00 0.00 0.00 2.52
267 271 2.018515 GTCTACTCCTCCCTCACTTCG 58.981 57.143 0.00 0.00 0.00 3.79
278 282 2.438411 CCTCACTTCGACTAGACAGGT 58.562 52.381 0.00 0.00 0.00 4.00
279 283 3.607741 CCTCACTTCGACTAGACAGGTA 58.392 50.000 0.00 0.00 0.00 3.08
285 289 1.211457 TCGACTAGACAGGTAGGTCCC 59.789 57.143 0.00 0.00 38.59 4.46
286 290 1.064906 CGACTAGACAGGTAGGTCCCA 60.065 57.143 0.00 0.00 38.59 4.37
287 291 2.377073 GACTAGACAGGTAGGTCCCAC 58.623 57.143 0.00 0.00 38.59 4.61
288 292 1.714787 ACTAGACAGGTAGGTCCCACA 59.285 52.381 0.00 0.00 38.59 4.17
289 293 2.100989 CTAGACAGGTAGGTCCCACAC 58.899 57.143 0.00 0.00 38.59 3.82
293 297 2.039879 GACAGGTAGGTCCCACACAAAT 59.960 50.000 0.00 0.00 36.75 2.32
295 299 3.263425 ACAGGTAGGTCCCACACAAATAG 59.737 47.826 0.00 0.00 36.75 1.73
304 308 3.566322 TCCCACACAAATAGTTTGGTTCG 59.434 43.478 7.28 0.00 44.88 3.95
308 312 4.214545 CACACAAATAGTTTGGTTCGGCTA 59.785 41.667 7.28 0.00 44.81 3.93
309 313 4.454504 ACACAAATAGTTTGGTTCGGCTAG 59.545 41.667 7.28 0.00 44.81 3.42
310 314 4.693566 CACAAATAGTTTGGTTCGGCTAGA 59.306 41.667 7.28 0.00 44.81 2.43
313 317 6.761714 ACAAATAGTTTGGTTCGGCTAGATAG 59.238 38.462 7.28 0.00 44.81 2.08
322 326 2.108168 TCGGCTAGATAGGTGCAAACT 58.892 47.619 0.00 0.00 0.00 2.66
348 352 0.102481 GATGGGCTGACACGATACGT 59.898 55.000 0.00 0.00 42.36 3.57
363 367 1.838112 TACGTGTCGACCTGGGTTAT 58.162 50.000 14.12 0.00 0.00 1.89
365 369 2.381911 ACGTGTCGACCTGGGTTATAT 58.618 47.619 14.12 0.00 0.00 0.86
369 373 2.044758 GTCGACCTGGGTTATATGGGT 58.955 52.381 3.51 0.00 0.00 4.51
370 374 2.436911 GTCGACCTGGGTTATATGGGTT 59.563 50.000 3.51 0.00 0.00 4.11
388 392 2.353011 GGTTAGGCACGCTAACTACACA 60.353 50.000 10.09 0.00 37.42 3.72
389 393 2.921754 GTTAGGCACGCTAACTACACAG 59.078 50.000 0.00 0.00 35.19 3.66
393 397 1.336517 GCACGCTAACTACACAGACCA 60.337 52.381 0.00 0.00 0.00 4.02
430 434 4.196778 TTGCACTCCGTGGCCCAA 62.197 61.111 0.00 0.00 33.64 4.12
431 435 4.641645 TGCACTCCGTGGCCCAAG 62.642 66.667 0.00 0.00 33.64 3.61
454 458 1.674817 CGTCATAGCAAGGAAACGGGT 60.675 52.381 0.00 0.00 0.00 5.28
456 460 1.626321 TCATAGCAAGGAAACGGGTCA 59.374 47.619 0.00 0.00 0.00 4.02
481 485 1.656818 CCAGCACATTTAGCCCACCG 61.657 60.000 0.00 0.00 0.00 4.94
499 503 1.304134 GGGGCGTCTGATTTTGGGT 60.304 57.895 0.00 0.00 0.00 4.51
520 525 1.202989 TGTTTGGGCCTATTGTGCTGA 60.203 47.619 4.53 0.00 0.00 4.26
524 529 2.101783 TGGGCCTATTGTGCTGATTTG 58.898 47.619 4.53 0.00 0.00 2.32
533 538 4.707030 TTGTGCTGATTTGAGGCTAATG 57.293 40.909 0.00 0.00 0.00 1.90
587 592 2.740826 CAGGCCGTGTTGTACCGG 60.741 66.667 0.00 0.00 46.90 5.28
593 598 1.883544 CGTGTTGTACCGGCACACA 60.884 57.895 20.53 13.93 33.70 3.72
607 612 2.034532 CACACATGCCCAGCCTCA 59.965 61.111 0.00 0.00 0.00 3.86
740 757 2.943653 GGGACGCCAAGAACAACG 59.056 61.111 0.00 0.00 0.00 4.10
741 758 2.251371 GGACGCCAAGAACAACGC 59.749 61.111 0.00 0.00 0.00 4.84
800 821 4.760047 TTGCCGAGCGCTTCCTCC 62.760 66.667 13.26 0.00 38.78 4.30
867 890 0.107508 CCCAGCCAGATTCACATCGT 60.108 55.000 0.00 0.00 34.17 3.73
868 891 1.138859 CCCAGCCAGATTCACATCGTA 59.861 52.381 0.00 0.00 34.17 3.43
869 892 2.224378 CCCAGCCAGATTCACATCGTAT 60.224 50.000 0.00 0.00 34.17 3.06
870 893 3.062763 CCAGCCAGATTCACATCGTATC 58.937 50.000 0.00 0.00 34.17 2.24
871 894 2.728318 CAGCCAGATTCACATCGTATCG 59.272 50.000 0.00 0.00 34.17 2.92
972 1013 2.014857 TCCCAGTCTCGTATCAACTCG 58.985 52.381 0.00 0.00 0.00 4.18
980 1021 0.866061 CGTATCAACTCGACCAGGCG 60.866 60.000 0.00 0.00 0.00 5.52
994 1035 4.168291 GGCGGAGGAGAAGCAGGG 62.168 72.222 0.00 0.00 0.00 4.45
1108 1149 2.899339 GCATCTTCTCCCCGCTGC 60.899 66.667 0.00 0.00 0.00 5.25
1181 1222 0.037877 TCTTTCTCTCGGAGGGTCGT 59.962 55.000 4.52 0.00 0.00 4.34
1270 1323 2.431057 CTGGCCTGGTACGATTAGAGTT 59.569 50.000 3.32 0.00 0.00 3.01
1409 1476 4.886579 ACCTCTTTGAATTGTGAATTGGC 58.113 39.130 0.00 0.00 0.00 4.52
1452 1520 6.133356 TGGTTTACTTCCAGAATTTTCACCT 58.867 36.000 0.00 0.00 0.00 4.00
1485 1554 5.048504 CGATAAATTACTGAGTACCCCGCTA 60.049 44.000 0.00 0.00 0.00 4.26
1497 1566 2.254508 ACCCCGCTATATACAAGGTCC 58.745 52.381 0.00 0.00 0.00 4.46
1535 1623 7.401860 CGAGTGTGTATAATTTTCTGATGGTG 58.598 38.462 0.00 0.00 0.00 4.17
1554 1642 3.591023 GTGGTCAGAAGAAACTAGGCTC 58.409 50.000 0.00 0.00 0.00 4.70
1601 1690 2.479049 CCAGAGTACCGATACAACCACG 60.479 54.545 0.00 0.00 33.30 4.94
1624 1713 4.268687 GACCAGCAGACAAGGTCG 57.731 61.111 0.00 0.00 42.02 4.79
1648 1737 6.435428 GGAACCGATGAATTGCGTTTATATT 58.565 36.000 0.00 0.00 0.00 1.28
1689 1778 0.904865 TGATCCTGCTCGACCTGGTT 60.905 55.000 0.00 0.00 0.00 3.67
1690 1779 0.250513 GATCCTGCTCGACCTGGTTT 59.749 55.000 0.00 0.00 0.00 3.27
1699 1789 1.407258 TCGACCTGGTTTGCAAAAAGG 59.593 47.619 28.42 28.42 32.80 3.11
1700 1790 1.407258 CGACCTGGTTTGCAAAAAGGA 59.593 47.619 33.34 12.67 31.64 3.36
1732 1822 5.824904 TGGTTACCGTAGATTCACTAGTC 57.175 43.478 0.00 0.00 0.00 2.59
1775 1865 9.040939 GTAAAAATAGTTGCATGTTTGGTTCTT 57.959 29.630 0.00 0.00 0.00 2.52
1841 1931 9.273016 ACTTACCGGTGATTAGATGATATTTTG 57.727 33.333 19.93 0.00 0.00 2.44
1842 1932 9.489084 CTTACCGGTGATTAGATGATATTTTGA 57.511 33.333 19.93 0.00 0.00 2.69
1843 1933 7.730364 ACCGGTGATTAGATGATATTTTGAC 57.270 36.000 6.12 0.00 0.00 3.18
1844 1934 6.710744 ACCGGTGATTAGATGATATTTTGACC 59.289 38.462 6.12 0.00 0.00 4.02
1845 1935 6.149474 CCGGTGATTAGATGATATTTTGACCC 59.851 42.308 0.00 0.00 0.00 4.46
1846 1936 6.710295 CGGTGATTAGATGATATTTTGACCCA 59.290 38.462 0.00 0.00 0.00 4.51
1847 1937 7.391554 CGGTGATTAGATGATATTTTGACCCAT 59.608 37.037 0.00 0.00 0.00 4.00
1848 1938 8.517878 GGTGATTAGATGATATTTTGACCCATG 58.482 37.037 0.00 0.00 0.00 3.66
1849 1939 9.071276 GTGATTAGATGATATTTTGACCCATGT 57.929 33.333 0.00 0.00 0.00 3.21
1850 1940 9.645128 TGATTAGATGATATTTTGACCCATGTT 57.355 29.630 0.00 0.00 0.00 2.71
1853 1943 7.722949 AGATGATATTTTGACCCATGTTTGT 57.277 32.000 0.00 0.00 0.00 2.83
1854 1944 8.137745 AGATGATATTTTGACCCATGTTTGTT 57.862 30.769 0.00 0.00 0.00 2.83
1855 1945 8.036575 AGATGATATTTTGACCCATGTTTGTTG 58.963 33.333 0.00 0.00 0.00 3.33
1856 1946 5.931146 TGATATTTTGACCCATGTTTGTTGC 59.069 36.000 0.00 0.00 0.00 4.17
1857 1947 3.902881 TTTTGACCCATGTTTGTTGCT 57.097 38.095 0.00 0.00 0.00 3.91
1858 1948 3.451141 TTTGACCCATGTTTGTTGCTC 57.549 42.857 0.00 0.00 0.00 4.26
1859 1949 2.064434 TGACCCATGTTTGTTGCTCA 57.936 45.000 0.00 0.00 0.00 4.26
1860 1950 2.382882 TGACCCATGTTTGTTGCTCAA 58.617 42.857 0.00 0.00 0.00 3.02
1861 1951 2.361757 TGACCCATGTTTGTTGCTCAAG 59.638 45.455 0.00 0.00 37.35 3.02
1862 1952 1.069049 ACCCATGTTTGTTGCTCAAGC 59.931 47.619 0.00 0.00 37.35 4.01
1863 1953 1.342174 CCCATGTTTGTTGCTCAAGCT 59.658 47.619 3.32 0.00 42.66 3.74
1864 1954 2.224113 CCCATGTTTGTTGCTCAAGCTT 60.224 45.455 3.32 0.00 42.66 3.74
1865 1955 2.798283 CCATGTTTGTTGCTCAAGCTTG 59.202 45.455 20.81 20.81 42.66 4.01
1866 1956 3.450578 CATGTTTGTTGCTCAAGCTTGT 58.549 40.909 25.19 0.00 42.66 3.16
1867 1957 3.591196 TGTTTGTTGCTCAAGCTTGTT 57.409 38.095 25.19 0.00 42.66 2.83
1868 1958 3.510719 TGTTTGTTGCTCAAGCTTGTTC 58.489 40.909 25.19 17.65 42.66 3.18
1869 1959 2.860136 GTTTGTTGCTCAAGCTTGTTCC 59.140 45.455 25.19 14.81 42.66 3.62
1870 1960 1.761449 TGTTGCTCAAGCTTGTTCCA 58.239 45.000 25.19 17.00 42.66 3.53
1871 1961 2.309613 TGTTGCTCAAGCTTGTTCCAT 58.690 42.857 25.19 0.00 42.66 3.41
1872 1962 3.485394 TGTTGCTCAAGCTTGTTCCATA 58.515 40.909 25.19 4.74 42.66 2.74
1873 1963 3.503363 TGTTGCTCAAGCTTGTTCCATAG 59.497 43.478 25.19 15.15 42.66 2.23
1874 1964 3.423539 TGCTCAAGCTTGTTCCATAGT 57.576 42.857 25.19 0.00 42.66 2.12
1875 1965 3.754965 TGCTCAAGCTTGTTCCATAGTT 58.245 40.909 25.19 0.00 42.66 2.24
1876 1966 3.503363 TGCTCAAGCTTGTTCCATAGTTG 59.497 43.478 25.19 0.00 42.66 3.16
1877 1967 3.671702 GCTCAAGCTTGTTCCATAGTTGC 60.672 47.826 25.19 11.14 38.21 4.17
1878 1968 2.819608 TCAAGCTTGTTCCATAGTTGCC 59.180 45.455 25.19 0.00 0.00 4.52
1879 1969 2.557924 CAAGCTTGTTCCATAGTTGCCA 59.442 45.455 18.65 0.00 0.00 4.92
1880 1970 2.162681 AGCTTGTTCCATAGTTGCCAC 58.837 47.619 0.00 0.00 0.00 5.01
1881 1971 1.135689 GCTTGTTCCATAGTTGCCACG 60.136 52.381 0.00 0.00 0.00 4.94
1882 1972 2.422597 CTTGTTCCATAGTTGCCACGA 58.577 47.619 0.00 0.00 0.00 4.35
1883 1973 2.093306 TGTTCCATAGTTGCCACGAG 57.907 50.000 0.00 0.00 0.00 4.18
1884 1974 1.621317 TGTTCCATAGTTGCCACGAGA 59.379 47.619 0.00 0.00 0.00 4.04
1885 1975 2.037902 TGTTCCATAGTTGCCACGAGAA 59.962 45.455 0.00 0.00 0.00 2.87
1886 1976 2.380084 TCCATAGTTGCCACGAGAAC 57.620 50.000 0.00 0.00 0.00 3.01
1887 1977 1.621317 TCCATAGTTGCCACGAGAACA 59.379 47.619 0.00 0.00 0.00 3.18
1888 1978 2.236146 TCCATAGTTGCCACGAGAACAT 59.764 45.455 0.00 0.00 0.00 2.71
1889 1979 3.449377 TCCATAGTTGCCACGAGAACATA 59.551 43.478 0.00 0.00 0.00 2.29
1890 1980 4.081365 TCCATAGTTGCCACGAGAACATAA 60.081 41.667 0.00 0.00 0.00 1.90
1891 1981 4.034048 CCATAGTTGCCACGAGAACATAAC 59.966 45.833 0.00 0.00 0.00 1.89
1892 1982 3.402628 AGTTGCCACGAGAACATAACT 57.597 42.857 0.00 0.00 0.00 2.24
1893 1983 4.530710 AGTTGCCACGAGAACATAACTA 57.469 40.909 0.00 0.00 0.00 2.24
1894 1984 4.243270 AGTTGCCACGAGAACATAACTAC 58.757 43.478 0.00 0.00 0.00 2.73
1895 1985 3.945981 TGCCACGAGAACATAACTACA 57.054 42.857 0.00 0.00 0.00 2.74
1896 1986 4.465632 TGCCACGAGAACATAACTACAT 57.534 40.909 0.00 0.00 0.00 2.29
1897 1987 4.180817 TGCCACGAGAACATAACTACATG 58.819 43.478 0.00 0.00 0.00 3.21
1898 1988 4.081917 TGCCACGAGAACATAACTACATGA 60.082 41.667 0.00 0.00 0.00 3.07
1899 1989 4.267928 GCCACGAGAACATAACTACATGAC 59.732 45.833 0.00 0.00 0.00 3.06
1900 1990 4.804139 CCACGAGAACATAACTACATGACC 59.196 45.833 0.00 0.00 0.00 4.02
1901 1991 5.407502 CACGAGAACATAACTACATGACCA 58.592 41.667 0.00 0.00 0.00 4.02
1902 1992 5.867174 CACGAGAACATAACTACATGACCAA 59.133 40.000 0.00 0.00 0.00 3.67
1903 1993 5.867716 ACGAGAACATAACTACATGACCAAC 59.132 40.000 0.00 0.00 0.00 3.77
1904 1994 6.100004 CGAGAACATAACTACATGACCAACT 58.900 40.000 0.00 0.00 0.00 3.16
1905 1995 7.094075 ACGAGAACATAACTACATGACCAACTA 60.094 37.037 0.00 0.00 0.00 2.24
1906 1996 7.921214 CGAGAACATAACTACATGACCAACTAT 59.079 37.037 0.00 0.00 0.00 2.12
2016 2107 8.266363 ACTATATTTTACCCCCGTAAGAATCA 57.734 34.615 0.00 0.00 35.88 2.57
2028 2119 6.319399 CCCGTAAGAATCACATTTGTTAACC 58.681 40.000 2.48 0.00 43.02 2.85
2036 2127 8.482128 AGAATCACATTTGTTAACCTTTTCCAA 58.518 29.630 2.48 0.00 0.00 3.53
2269 2416 9.113838 TCATTTTATTTTTGTTTAAGCCTTGCA 57.886 25.926 0.00 0.00 0.00 4.08
2272 2419 9.780413 TTTTATTTTTGTTTAAGCCTTGCAAAG 57.220 25.926 0.00 0.00 45.69 2.77
2276 2423 2.135139 GTTTAAGCCTTGCAAAGTGGC 58.865 47.619 18.04 18.04 44.25 5.01
2298 2445 6.039493 TGGCGTAGTTTAAGGTGAATTTTTCA 59.961 34.615 0.00 0.00 37.33 2.69
2299 2446 7.088272 GGCGTAGTTTAAGGTGAATTTTTCAT 58.912 34.615 0.00 0.00 42.47 2.57
2300 2447 8.238631 GGCGTAGTTTAAGGTGAATTTTTCATA 58.761 33.333 0.00 0.00 42.47 2.15
2301 2448 9.783256 GCGTAGTTTAAGGTGAATTTTTCATAT 57.217 29.630 0.00 0.00 42.47 1.78
2318 2465 8.948631 TTTTCATATTTTGTACAAACCTTGCA 57.051 26.923 20.43 5.59 0.00 4.08
2319 2466 8.586570 TTTCATATTTTGTACAAACCTTGCAG 57.413 30.769 20.43 7.54 0.00 4.41
2320 2467 7.517614 TCATATTTTGTACAAACCTTGCAGA 57.482 32.000 20.43 9.53 0.00 4.26
2321 2468 7.592938 TCATATTTTGTACAAACCTTGCAGAG 58.407 34.615 20.43 4.80 0.00 3.35
2322 2469 5.852282 ATTTTGTACAAACCTTGCAGAGT 57.148 34.783 20.43 0.00 0.00 3.24
2323 2470 6.952773 ATTTTGTACAAACCTTGCAGAGTA 57.047 33.333 20.43 2.13 0.00 2.59
2324 2471 6.371809 TTTTGTACAAACCTTGCAGAGTAG 57.628 37.500 20.43 0.00 0.00 2.57
2325 2472 4.682778 TGTACAAACCTTGCAGAGTAGT 57.317 40.909 0.00 0.00 0.00 2.73
2326 2473 5.031066 TGTACAAACCTTGCAGAGTAGTT 57.969 39.130 0.00 0.00 0.00 2.24
2378 2525 9.717942 AAGTTCTCTATAAGCAGGCTTATATTG 57.282 33.333 25.69 21.22 45.11 1.90
2443 2590 5.450550 GGCTGCTTTCTTCTTGTACTTGTTT 60.451 40.000 0.00 0.00 0.00 2.83
2483 2630 6.338214 TGTGGCAATGCTCTTTAATTAACA 57.662 33.333 4.82 0.00 0.00 2.41
2514 2661 7.324178 ACTTTTATGTCAGTAGTGAGGCTTAG 58.676 38.462 0.00 0.00 31.53 2.18
2518 2665 6.552445 ATGTCAGTAGTGAGGCTTAGAATT 57.448 37.500 0.00 0.00 31.53 2.17
2611 2758 8.540388 ACACTGTGTTCTAATGTTCAGGTATAT 58.460 33.333 7.80 0.00 0.00 0.86
2705 2852 1.894512 CCATGCCATGCTTGCAGAA 59.105 52.632 0.00 0.00 42.92 3.02
2734 2881 8.726988 TGTGAACTTGTGATTTAGCCTAATAAC 58.273 33.333 0.00 0.00 0.00 1.89
2747 2894 8.568676 TTAGCCTAATAACTTGCATTAACACA 57.431 30.769 0.00 0.00 0.00 3.72
2776 2923 0.107831 TTACAGCCAAGGACGCAACT 59.892 50.000 0.00 0.00 0.00 3.16
2875 3022 1.076850 TACGATACCTGCCCGGACA 60.077 57.895 0.73 0.00 36.31 4.02
2923 3070 1.222567 ACAACCAAGACAAGACCCCT 58.777 50.000 0.00 0.00 0.00 4.79
3193 3343 1.205893 TGGGACCAAGTTTTGTTGTGC 59.794 47.619 0.00 0.00 0.00 4.57
3263 3413 0.179065 TGCATTCTCCTCGATGCCTG 60.179 55.000 4.13 0.00 39.12 4.85
3264 3414 0.179062 GCATTCTCCTCGATGCCTGT 60.179 55.000 0.00 0.00 34.23 4.00
3298 3448 5.174943 GCACCGGTTCTATTTTCAACAAAAG 59.825 40.000 2.97 0.00 34.92 2.27
3300 3450 7.419204 CACCGGTTCTATTTTCAACAAAAGTA 58.581 34.615 2.97 0.00 34.92 2.24
3301 3451 7.589954 CACCGGTTCTATTTTCAACAAAAGTAG 59.410 37.037 2.97 0.00 38.10 2.57
3340 3490 5.186797 TGTTTTGGAAGAAAACATGTCTGGT 59.813 36.000 0.00 0.00 42.96 4.00
3351 3501 0.391661 ATGTCTGGTGCTACAAGGCG 60.392 55.000 0.00 0.00 34.52 5.52
3372 3522 2.435805 GAGGCATGTAGATGGGTGAGAA 59.564 50.000 1.57 0.00 0.00 2.87
3427 3577 1.079127 CTCCGCCGACCTTGACAAT 60.079 57.895 0.00 0.00 0.00 2.71
3489 3639 9.295825 TCAGTTGTAAATATCAGTGTTTTGGAT 57.704 29.630 0.00 0.00 0.00 3.41
3544 3694 5.319140 TCCAACATCAGCATCATTGAAAG 57.681 39.130 0.00 0.00 0.00 2.62
3592 3742 2.243221 AGATAGCAAGGCTGTGGGATTT 59.757 45.455 0.07 0.00 40.10 2.17
3630 3780 6.732862 ACTCTGGTGCCTTCTGGATATATATT 59.267 38.462 0.00 0.00 34.57 1.28
3631 3781 7.238514 ACTCTGGTGCCTTCTGGATATATATTT 59.761 37.037 0.00 0.00 34.57 1.40
3632 3782 8.679344 TCTGGTGCCTTCTGGATATATATTTA 57.321 34.615 0.00 0.00 34.57 1.40
3633 3783 8.540388 TCTGGTGCCTTCTGGATATATATTTAC 58.460 37.037 0.00 0.00 34.57 2.01
3634 3784 8.213489 TGGTGCCTTCTGGATATATATTTACA 57.787 34.615 0.00 0.00 34.57 2.41
3635 3785 8.321353 TGGTGCCTTCTGGATATATATTTACAG 58.679 37.037 8.68 8.68 34.57 2.74
3636 3786 8.322091 GGTGCCTTCTGGATATATATTTACAGT 58.678 37.037 13.30 0.00 34.57 3.55
3637 3787 9.726438 GTGCCTTCTGGATATATATTTACAGTT 57.274 33.333 13.30 0.00 34.57 3.16
3671 3821 3.730715 CAGTCGTCTGTTTTCATTTTGGC 59.269 43.478 1.16 0.00 36.97 4.52
3672 3822 3.632145 AGTCGTCTGTTTTCATTTTGGCT 59.368 39.130 0.00 0.00 0.00 4.75
3673 3823 4.097892 AGTCGTCTGTTTTCATTTTGGCTT 59.902 37.500 0.00 0.00 0.00 4.35
3674 3824 4.441087 GTCGTCTGTTTTCATTTTGGCTTC 59.559 41.667 0.00 0.00 0.00 3.86
3675 3825 4.097135 TCGTCTGTTTTCATTTTGGCTTCA 59.903 37.500 0.00 0.00 0.00 3.02
3676 3826 4.803088 CGTCTGTTTTCATTTTGGCTTCAA 59.197 37.500 0.00 0.00 0.00 2.69
3677 3827 5.051508 CGTCTGTTTTCATTTTGGCTTCAAG 60.052 40.000 0.00 0.00 0.00 3.02
3678 3828 5.812127 GTCTGTTTTCATTTTGGCTTCAAGT 59.188 36.000 0.00 0.00 0.00 3.16
3679 3829 6.019559 GTCTGTTTTCATTTTGGCTTCAAGTC 60.020 38.462 0.00 0.00 0.00 3.01
3680 3830 4.803088 TGTTTTCATTTTGGCTTCAAGTCG 59.197 37.500 0.00 0.00 0.00 4.18
3681 3831 4.909696 TTTCATTTTGGCTTCAAGTCGA 57.090 36.364 0.00 0.00 0.00 4.20
3682 3832 4.909696 TTCATTTTGGCTTCAAGTCGAA 57.090 36.364 0.00 0.00 0.00 3.71
3683 3833 5.452078 TTCATTTTGGCTTCAAGTCGAAT 57.548 34.783 0.00 0.00 31.69 3.34
3684 3834 5.452078 TCATTTTGGCTTCAAGTCGAATT 57.548 34.783 0.00 0.00 31.69 2.17
3685 3835 5.841810 TCATTTTGGCTTCAAGTCGAATTT 58.158 33.333 0.00 0.00 31.69 1.82
3686 3836 6.279882 TCATTTTGGCTTCAAGTCGAATTTT 58.720 32.000 0.00 0.00 31.69 1.82
3687 3837 6.420604 TCATTTTGGCTTCAAGTCGAATTTTC 59.579 34.615 0.00 0.00 31.69 2.29
3688 3838 4.909696 TTGGCTTCAAGTCGAATTTTCA 57.090 36.364 0.00 0.00 31.69 2.69
3689 3839 4.488126 TGGCTTCAAGTCGAATTTTCAG 57.512 40.909 0.00 0.00 31.69 3.02
3690 3840 3.882888 TGGCTTCAAGTCGAATTTTCAGT 59.117 39.130 0.00 0.00 31.69 3.41
3691 3841 4.024048 TGGCTTCAAGTCGAATTTTCAGTC 60.024 41.667 0.00 0.00 31.69 3.51
3692 3842 4.144555 GCTTCAAGTCGAATTTTCAGTCG 58.855 43.478 0.00 0.00 41.93 4.18
3693 3843 4.318831 GCTTCAAGTCGAATTTTCAGTCGT 60.319 41.667 0.00 0.00 41.31 4.34
3694 3844 5.728351 TTCAAGTCGAATTTTCAGTCGTT 57.272 34.783 0.00 0.00 41.31 3.85
3695 3845 5.324739 TCAAGTCGAATTTTCAGTCGTTC 57.675 39.130 0.00 0.00 41.31 3.95
3696 3846 4.085261 TCAAGTCGAATTTTCAGTCGTTCG 60.085 41.667 0.00 0.00 41.31 3.95
3697 3847 3.635331 AGTCGAATTTTCAGTCGTTCGA 58.365 40.909 5.11 5.11 46.84 3.71
3700 3850 5.186404 TCGAATTTTCAGTCGTTCGATTC 57.814 39.130 5.11 0.00 44.97 2.52
3701 3851 4.682401 TCGAATTTTCAGTCGTTCGATTCA 59.318 37.500 5.11 0.00 44.97 2.57
3702 3852 5.009510 CGAATTTTCAGTCGTTCGATTCAG 58.990 41.667 0.00 0.00 44.37 3.02
3703 3853 5.388475 CGAATTTTCAGTCGTTCGATTCAGT 60.388 40.000 0.00 0.00 44.37 3.41
3704 3854 5.924475 ATTTTCAGTCGTTCGATTCAGTT 57.076 34.783 0.00 0.00 0.00 3.16
3705 3855 4.966850 TTTCAGTCGTTCGATTCAGTTC 57.033 40.909 0.00 0.00 0.00 3.01
3706 3856 3.917329 TCAGTCGTTCGATTCAGTTCT 57.083 42.857 0.00 0.00 0.00 3.01
3707 3857 3.565516 TCAGTCGTTCGATTCAGTTCTG 58.434 45.455 0.00 0.02 0.00 3.02
3708 3858 3.252458 TCAGTCGTTCGATTCAGTTCTGA 59.748 43.478 0.00 0.00 0.00 3.27
3709 3859 3.605916 CAGTCGTTCGATTCAGTTCTGAG 59.394 47.826 2.77 0.00 0.00 3.35
3710 3860 3.502595 AGTCGTTCGATTCAGTTCTGAGA 59.497 43.478 2.77 0.00 0.00 3.27
3711 3861 4.156922 AGTCGTTCGATTCAGTTCTGAGAT 59.843 41.667 2.77 1.16 0.00 2.75
3712 3862 4.497608 GTCGTTCGATTCAGTTCTGAGATC 59.502 45.833 2.77 8.15 0.00 2.75
3713 3863 4.396478 TCGTTCGATTCAGTTCTGAGATCT 59.604 41.667 0.00 0.00 0.00 2.75
3714 3864 4.498681 CGTTCGATTCAGTTCTGAGATCTG 59.501 45.833 13.10 13.10 32.50 2.90
3715 3865 4.039151 TCGATTCAGTTCTGAGATCTGC 57.961 45.455 14.21 2.14 31.62 4.26
3716 3866 2.788233 CGATTCAGTTCTGAGATCTGCG 59.212 50.000 14.21 9.34 31.62 5.18
3717 3867 2.001812 TTCAGTTCTGAGATCTGCGC 57.998 50.000 14.21 0.00 31.62 6.09
3718 3868 1.180907 TCAGTTCTGAGATCTGCGCT 58.819 50.000 14.21 0.00 31.62 5.92
3719 3869 1.135170 TCAGTTCTGAGATCTGCGCTG 60.135 52.381 14.21 8.88 31.62 5.18
3720 3870 0.175302 AGTTCTGAGATCTGCGCTGG 59.825 55.000 14.70 4.50 0.00 4.85
3721 3871 0.108424 GTTCTGAGATCTGCGCTGGT 60.108 55.000 14.70 7.19 0.00 4.00
3722 3872 0.108472 TTCTGAGATCTGCGCTGGTG 60.108 55.000 14.70 0.00 0.00 4.17
3723 3873 1.217511 CTGAGATCTGCGCTGGTGT 59.782 57.895 14.70 5.54 0.00 4.16
3724 3874 1.079612 TGAGATCTGCGCTGGTGTG 60.080 57.895 14.70 0.00 0.00 3.82
3725 3875 1.812922 GAGATCTGCGCTGGTGTGG 60.813 63.158 14.70 0.00 0.00 4.17
3726 3876 3.503363 GATCTGCGCTGGTGTGGC 61.503 66.667 14.70 0.00 0.00 5.01
3727 3877 3.965539 GATCTGCGCTGGTGTGGCT 62.966 63.158 14.70 0.00 0.00 4.75
3728 3878 4.994471 TCTGCGCTGGTGTGGCTG 62.994 66.667 14.70 0.00 0.00 4.85
3729 3879 4.994471 CTGCGCTGGTGTGGCTGA 62.994 66.667 9.73 0.00 0.00 4.26
3762 3912 2.550208 CCGCTTTGTCTTAGTGGGTCTT 60.550 50.000 0.00 0.00 39.17 3.01
3794 3944 4.829518 GGTCATTTTCGCGCCCGC 62.830 66.667 0.00 1.98 37.85 6.13
3796 3946 3.053291 TCATTTTCGCGCCCGCTT 61.053 55.556 11.12 0.00 39.32 4.68
3814 3964 2.018544 TTTTTCCAGTGTCGCGTGG 58.981 52.632 5.77 6.57 34.87 4.94
3825 3975 0.308376 GTCGCGTGGAGGATCTAGTC 59.692 60.000 5.77 0.00 33.73 2.59
3836 3986 3.127250 AGGATCTAGTCTGTCCTCCTCA 58.873 50.000 0.00 0.00 37.88 3.86
3886 4057 4.176851 GGCGACGACGGAGAGGTC 62.177 72.222 9.67 0.00 40.15 3.85
3901 4072 6.380274 ACGGAGAGGTCAAACTTCAGATATTA 59.620 38.462 0.00 0.00 0.00 0.98
3919 4091 9.949174 CAGATATTATCTTCTCTGTGGATATCG 57.051 37.037 3.34 0.00 37.58 2.92
3943 4115 4.263683 CCTCCCTTTCTTCTCTCCATTTGT 60.264 45.833 0.00 0.00 0.00 2.83
3962 4134 2.771762 GCCCCTCTCCTCCAGCAT 60.772 66.667 0.00 0.00 0.00 3.79
3968 4140 1.617536 TCTCCTCCAGCATGCCCTT 60.618 57.895 15.66 0.00 31.97 3.95
3981 4153 2.510906 CCCTTCCCTACCATGGCG 59.489 66.667 13.04 2.73 0.00 5.69
3991 4163 0.687757 TACCATGGCGCCTTCTCTCT 60.688 55.000 29.70 5.88 0.00 3.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.083774 GCGTCATCATTGAACCCTTGA 58.916 47.619 0.00 0.00 32.48 3.02
1 2 1.202065 CGCGTCATCATTGAACCCTTG 60.202 52.381 0.00 0.00 32.48 3.61
2 3 1.086696 CGCGTCATCATTGAACCCTT 58.913 50.000 0.00 0.00 32.48 3.95
3 4 0.036388 ACGCGTCATCATTGAACCCT 60.036 50.000 5.58 0.00 32.48 4.34
4 5 0.096976 CACGCGTCATCATTGAACCC 59.903 55.000 9.86 0.00 32.48 4.11
5 6 0.521242 GCACGCGTCATCATTGAACC 60.521 55.000 9.86 0.00 32.48 3.62
6 7 0.853224 CGCACGCGTCATCATTGAAC 60.853 55.000 9.86 0.00 32.48 3.18
7 8 1.011451 TCGCACGCGTCATCATTGAA 61.011 50.000 9.86 0.00 40.74 2.69
8 9 1.445238 TCGCACGCGTCATCATTGA 60.445 52.632 9.86 0.00 40.74 2.57
9 10 1.296145 GTCGCACGCGTCATCATTG 60.296 57.895 9.86 0.00 40.74 2.82
10 11 1.014044 AAGTCGCACGCGTCATCATT 61.014 50.000 9.86 0.00 40.74 2.57
11 12 1.014044 AAAGTCGCACGCGTCATCAT 61.014 50.000 9.86 0.00 40.74 2.45
12 13 1.663388 AAAGTCGCACGCGTCATCA 60.663 52.632 9.86 0.00 40.74 3.07
13 14 1.225475 CAAAGTCGCACGCGTCATC 60.225 57.895 9.86 0.00 40.74 2.92
14 15 2.667318 CCAAAGTCGCACGCGTCAT 61.667 57.895 9.86 0.00 40.74 3.06
15 16 3.334751 CCAAAGTCGCACGCGTCA 61.335 61.111 9.86 0.00 40.74 4.35
16 17 4.072088 CCCAAAGTCGCACGCGTC 62.072 66.667 9.86 5.90 40.74 5.19
20 21 4.025401 GTGCCCCAAAGTCGCACG 62.025 66.667 0.00 0.00 43.00 5.34
22 23 2.192861 CAAGTGCCCCAAAGTCGCA 61.193 57.895 0.00 0.00 0.00 5.10
23 24 2.644992 CAAGTGCCCCAAAGTCGC 59.355 61.111 0.00 0.00 0.00 5.19
24 25 1.526575 ATGCAAGTGCCCCAAAGTCG 61.527 55.000 0.00 0.00 41.18 4.18
25 26 0.037975 CATGCAAGTGCCCCAAAGTC 60.038 55.000 0.00 0.00 41.18 3.01
26 27 1.474332 CCATGCAAGTGCCCCAAAGT 61.474 55.000 0.00 0.00 41.18 2.66
30 31 2.036098 CTCCATGCAAGTGCCCCA 59.964 61.111 0.00 0.00 41.18 4.96
38 39 0.391661 GCCGAGAAGTCTCCATGCAA 60.392 55.000 2.75 0.00 39.79 4.08
59 60 1.750778 CGGCTTGCCCTTGTTGATAAT 59.249 47.619 6.02 0.00 0.00 1.28
65 66 1.600916 GAGTCGGCTTGCCCTTGTT 60.601 57.895 6.02 0.00 0.00 2.83
67 68 2.037136 CAGAGTCGGCTTGCCCTTG 61.037 63.158 6.02 0.00 0.00 3.61
72 73 0.461961 ACCTATCAGAGTCGGCTTGC 59.538 55.000 0.00 0.00 0.00 4.01
78 79 2.623416 TGCCATGTACCTATCAGAGTCG 59.377 50.000 0.00 0.00 0.00 4.18
85 86 3.741344 GTCGATGTTGCCATGTACCTATC 59.259 47.826 0.00 0.00 0.00 2.08
86 87 3.728845 GTCGATGTTGCCATGTACCTAT 58.271 45.455 0.00 0.00 0.00 2.57
89 90 0.650512 CGTCGATGTTGCCATGTACC 59.349 55.000 0.00 0.00 0.00 3.34
90 91 0.026285 GCGTCGATGTTGCCATGTAC 59.974 55.000 6.48 0.00 0.00 2.90
108 109 4.415332 TGAACGAGTCGCCGAGGC 62.415 66.667 13.59 3.59 37.85 4.70
109 110 2.202492 CTGAACGAGTCGCCGAGG 60.202 66.667 13.59 0.00 0.00 4.63
110 111 2.202492 CCTGAACGAGTCGCCGAG 60.202 66.667 13.59 5.39 0.00 4.63
116 117 0.175073 ATTACCGCCCTGAACGAGTC 59.825 55.000 0.00 0.00 0.00 3.36
117 118 0.108329 CATTACCGCCCTGAACGAGT 60.108 55.000 0.00 0.00 0.00 4.18
121 122 1.429148 CGAGCATTACCGCCCTGAAC 61.429 60.000 0.00 0.00 0.00 3.18
124 125 1.429148 GAACGAGCATTACCGCCCTG 61.429 60.000 0.00 0.00 0.00 4.45
129 130 1.995991 CCACGAACGAGCATTACCG 59.004 57.895 0.14 0.00 0.00 4.02
184 186 8.644374 AGGTTTATAAGAAATACAAAGCACCA 57.356 30.769 0.00 0.00 0.00 4.17
244 248 3.837399 AGTGAGGGAGGAGTAGACTTT 57.163 47.619 0.00 0.00 0.00 2.66
247 251 2.018515 CGAAGTGAGGGAGGAGTAGAC 58.981 57.143 0.00 0.00 0.00 2.59
248 252 1.914108 TCGAAGTGAGGGAGGAGTAGA 59.086 52.381 0.00 0.00 0.00 2.59
257 261 1.746220 CCTGTCTAGTCGAAGTGAGGG 59.254 57.143 0.00 0.00 0.00 4.30
262 266 3.608796 GACCTACCTGTCTAGTCGAAGT 58.391 50.000 0.00 0.00 32.39 3.01
267 271 2.291411 TGTGGGACCTACCTGTCTAGTC 60.291 54.545 5.41 0.00 38.98 2.59
285 289 3.004315 AGCCGAACCAAACTATTTGTGTG 59.996 43.478 0.97 0.00 38.98 3.82
286 290 3.219281 AGCCGAACCAAACTATTTGTGT 58.781 40.909 0.97 0.00 38.98 3.72
287 291 3.915437 AGCCGAACCAAACTATTTGTG 57.085 42.857 0.97 0.00 38.98 3.33
288 292 4.901868 TCTAGCCGAACCAAACTATTTGT 58.098 39.130 0.97 0.00 38.98 2.83
289 293 6.202954 CCTATCTAGCCGAACCAAACTATTTG 59.797 42.308 0.00 0.00 40.32 2.32
293 297 4.098960 CACCTATCTAGCCGAACCAAACTA 59.901 45.833 0.00 0.00 0.00 2.24
295 299 3.195661 CACCTATCTAGCCGAACCAAAC 58.804 50.000 0.00 0.00 0.00 2.93
304 308 2.945668 CCAAGTTTGCACCTATCTAGCC 59.054 50.000 0.00 0.00 0.00 3.93
308 312 1.075374 TGGCCAAGTTTGCACCTATCT 59.925 47.619 0.61 0.00 0.00 1.98
309 313 1.474077 CTGGCCAAGTTTGCACCTATC 59.526 52.381 7.01 0.00 0.00 2.08
310 314 1.075374 TCTGGCCAAGTTTGCACCTAT 59.925 47.619 7.01 0.00 0.00 2.57
313 317 0.037975 CATCTGGCCAAGTTTGCACC 60.038 55.000 7.01 0.00 0.00 5.01
341 345 1.063649 CCCAGGTCGACACGTATCG 59.936 63.158 18.91 10.58 43.63 2.92
348 352 2.043992 CCCATATAACCCAGGTCGACA 58.956 52.381 18.91 0.00 0.00 4.35
349 353 2.044758 ACCCATATAACCCAGGTCGAC 58.955 52.381 7.13 7.13 0.00 4.20
350 354 2.482414 ACCCATATAACCCAGGTCGA 57.518 50.000 0.00 0.00 0.00 4.20
363 367 2.607631 GTTAGCGTGCCTAACCCATA 57.392 50.000 2.59 0.00 46.64 2.74
369 373 2.821378 TCTGTGTAGTTAGCGTGCCTAA 59.179 45.455 0.00 0.00 33.69 2.69
370 374 2.163010 GTCTGTGTAGTTAGCGTGCCTA 59.837 50.000 0.00 0.00 0.00 3.93
417 421 4.643387 GTGCTTGGGCCACGGAGT 62.643 66.667 5.23 0.00 37.63 3.85
422 426 1.369091 CTATGACGTGCTTGGGCCAC 61.369 60.000 5.23 0.00 37.74 5.01
430 434 2.076863 GTTTCCTTGCTATGACGTGCT 58.923 47.619 0.00 0.00 0.00 4.40
431 435 1.201921 CGTTTCCTTGCTATGACGTGC 60.202 52.381 0.00 0.00 0.00 5.34
454 458 0.403655 TAAATGTGCTGGTGGGCTGA 59.596 50.000 0.00 0.00 0.00 4.26
456 460 0.967380 GCTAAATGTGCTGGTGGGCT 60.967 55.000 0.00 0.00 0.00 5.19
464 468 1.378514 CCGGTGGGCTAAATGTGCT 60.379 57.895 0.00 0.00 0.00 4.40
481 485 0.898326 AACCCAAAATCAGACGCCCC 60.898 55.000 0.00 0.00 0.00 5.80
483 487 0.958822 ACAACCCAAAATCAGACGCC 59.041 50.000 0.00 0.00 0.00 5.68
484 488 2.793278 AACAACCCAAAATCAGACGC 57.207 45.000 0.00 0.00 0.00 5.19
499 503 1.617850 CAGCACAATAGGCCCAAACAA 59.382 47.619 0.00 0.00 0.00 2.83
560 565 3.193903 ACAACACGGCCTGTTTACTTTTT 59.806 39.130 15.32 0.00 41.50 1.94
561 566 2.756207 ACAACACGGCCTGTTTACTTTT 59.244 40.909 15.32 0.00 41.50 2.27
579 584 1.511318 GCATGTGTGTGCCGGTACAA 61.511 55.000 27.66 12.68 39.18 2.41
587 592 4.060038 GGCTGGGCATGTGTGTGC 62.060 66.667 0.00 0.00 44.31 4.57
588 593 2.282674 AGGCTGGGCATGTGTGTG 60.283 61.111 0.00 0.00 0.00 3.82
704 721 1.895966 GTTCCGACTCCACCTACCC 59.104 63.158 0.00 0.00 0.00 3.69
736 753 1.154654 GCGTTTCTTCCTCGCGTTG 60.155 57.895 5.77 0.00 40.51 4.10
741 758 1.201921 CCGAATTGCGTTTCTTCCTCG 60.202 52.381 0.00 0.00 38.67 4.63
800 821 2.750815 AAAAATCGCGAGGAGACGG 58.249 52.632 16.66 0.00 0.00 4.79
867 890 2.108157 GTGGGTGGCGATGCGATA 59.892 61.111 0.00 0.00 0.00 2.92
868 891 4.856801 GGTGGGTGGCGATGCGAT 62.857 66.667 0.00 0.00 0.00 4.58
871 894 2.676471 AAAGGTGGGTGGCGATGC 60.676 61.111 0.00 0.00 0.00 3.91
927 968 2.182842 GCCGCAGATCCGCAAGAAT 61.183 57.895 1.15 0.00 43.02 2.40
972 1013 2.896443 CTTCTCCTCCGCCTGGTC 59.104 66.667 0.00 0.00 36.30 4.02
980 1021 1.616628 TTCCCCCTGCTTCTCCTCC 60.617 63.158 0.00 0.00 0.00 4.30
994 1035 1.452108 CCGCCTTGGACATCTTCCC 60.452 63.158 0.00 0.00 45.17 3.97
1020 1061 1.484444 GCTTGGACACCTCCTCCAGT 61.484 60.000 0.00 0.00 39.06 4.00
1108 1149 2.450476 CAAGGAAACAATCAGGAGGGG 58.550 52.381 0.00 0.00 0.00 4.79
1239 1292 2.325082 CCAGGCCAGCACGTAACAC 61.325 63.158 5.01 0.00 0.00 3.32
1270 1323 3.051210 CAGATCTGCCGGCGGATA 58.949 61.111 43.14 24.10 41.66 2.59
1409 1476 3.766591 ACCAGAGTGTGTAATCTCTCAGG 59.233 47.826 0.00 0.00 38.74 3.86
1447 1515 1.548081 TTATCGGTTCCGACAGGTGA 58.452 50.000 16.22 0.00 41.38 4.02
1452 1520 5.105635 ACTCAGTAATTTATCGGTTCCGACA 60.106 40.000 16.22 1.48 41.38 4.35
1485 1554 6.537660 GCTAAAAGTGTTCGGACCTTGTATAT 59.462 38.462 0.00 0.00 0.00 0.86
1515 1584 7.624360 TGACCACCATCAGAAAATTATACAC 57.376 36.000 0.00 0.00 0.00 2.90
1535 1623 3.511934 TGAGAGCCTAGTTTCTTCTGACC 59.488 47.826 0.00 0.00 0.00 4.02
1554 1642 7.360946 GCTTTATGTATATAAAAGCGGGGTGAG 60.361 40.741 12.37 0.00 38.06 3.51
1615 1704 0.245539 TCATCGGTTCCGACCTTGTC 59.754 55.000 16.22 0.00 44.20 3.18
1624 1713 2.629639 AAACGCAATTCATCGGTTCC 57.370 45.000 0.00 0.00 28.33 3.62
1633 1722 3.179599 GCACGGCAATATAAACGCAATTC 59.820 43.478 0.00 0.00 0.00 2.17
1648 1737 0.394938 TAGAAGAAGGTTGCACGGCA 59.605 50.000 0.00 0.00 36.47 5.69
1699 1789 1.890489 ACGGTAACCAAAAGGGCAATC 59.110 47.619 0.00 0.00 42.05 2.67
1700 1790 2.003937 ACGGTAACCAAAAGGGCAAT 57.996 45.000 0.00 0.00 42.05 3.56
1707 1797 6.996509 ACTAGTGAATCTACGGTAACCAAAA 58.003 36.000 0.00 0.00 0.00 2.44
1715 1805 6.606395 AGGTAATTGACTAGTGAATCTACGGT 59.394 38.462 8.08 0.00 0.00 4.83
1775 1865 4.098914 AGAAAGGGCAACATAACACTCA 57.901 40.909 0.00 0.00 39.74 3.41
1841 1931 2.863704 GCTTGAGCAACAAACATGGGTC 60.864 50.000 0.00 0.00 41.59 4.46
1842 1932 1.069049 GCTTGAGCAACAAACATGGGT 59.931 47.619 0.00 0.00 41.59 4.51
1843 1933 1.342174 AGCTTGAGCAACAAACATGGG 59.658 47.619 5.70 0.00 45.16 4.00
1844 1934 2.798283 CAAGCTTGAGCAACAAACATGG 59.202 45.455 22.31 0.00 45.16 3.66
1845 1935 3.450578 ACAAGCTTGAGCAACAAACATG 58.549 40.909 32.50 1.76 45.16 3.21
1846 1936 3.806625 ACAAGCTTGAGCAACAAACAT 57.193 38.095 32.50 2.52 45.16 2.71
1847 1937 3.510719 GAACAAGCTTGAGCAACAAACA 58.489 40.909 32.50 0.00 45.16 2.83
1848 1938 2.860136 GGAACAAGCTTGAGCAACAAAC 59.140 45.455 32.50 11.37 45.16 2.93
1849 1939 2.495270 TGGAACAAGCTTGAGCAACAAA 59.505 40.909 32.50 6.86 45.16 2.83
1850 1940 2.098614 TGGAACAAGCTTGAGCAACAA 58.901 42.857 32.50 9.32 45.16 2.83
1851 1941 1.761449 TGGAACAAGCTTGAGCAACA 58.239 45.000 32.50 18.82 45.16 3.33
1856 1946 5.581112 TGGCAACTATGGAACAAGCTTGAG 61.581 45.833 32.50 19.52 39.55 3.02
1857 1947 3.750276 TGGCAACTATGGAACAAGCTTGA 60.750 43.478 32.50 10.88 39.55 3.02
1858 1948 2.557924 TGGCAACTATGGAACAAGCTTG 59.442 45.455 24.84 24.84 39.55 4.01
1859 1949 2.558359 GTGGCAACTATGGAACAAGCTT 59.442 45.455 0.00 0.00 39.55 3.74
1860 1950 2.162681 GTGGCAACTATGGAACAAGCT 58.837 47.619 0.00 0.00 39.55 3.74
1861 1951 1.135689 CGTGGCAACTATGGAACAAGC 60.136 52.381 0.00 0.00 39.55 4.01
1862 1952 2.416547 CTCGTGGCAACTATGGAACAAG 59.583 50.000 0.00 0.00 39.55 3.16
1863 1953 2.037902 TCTCGTGGCAACTATGGAACAA 59.962 45.455 0.00 0.00 39.55 2.83
1864 1954 1.621317 TCTCGTGGCAACTATGGAACA 59.379 47.619 0.00 0.00 40.49 3.18
1865 1955 2.380084 TCTCGTGGCAACTATGGAAC 57.620 50.000 0.00 0.00 37.61 3.62
1866 1956 2.037902 TGTTCTCGTGGCAACTATGGAA 59.962 45.455 0.00 0.00 37.61 3.53
1867 1957 1.621317 TGTTCTCGTGGCAACTATGGA 59.379 47.619 0.00 0.00 37.61 3.41
1868 1958 2.093306 TGTTCTCGTGGCAACTATGG 57.907 50.000 0.00 0.00 37.61 2.74
1869 1959 4.870426 AGTTATGTTCTCGTGGCAACTATG 59.130 41.667 0.00 0.00 37.61 2.23
1870 1960 5.086104 AGTTATGTTCTCGTGGCAACTAT 57.914 39.130 0.00 0.00 37.61 2.12
1871 1961 4.530710 AGTTATGTTCTCGTGGCAACTA 57.469 40.909 0.00 0.00 37.61 2.24
1872 1962 3.402628 AGTTATGTTCTCGTGGCAACT 57.597 42.857 0.00 0.00 37.61 3.16
1873 1963 3.991773 TGTAGTTATGTTCTCGTGGCAAC 59.008 43.478 0.00 0.00 0.00 4.17
1874 1964 4.260139 TGTAGTTATGTTCTCGTGGCAA 57.740 40.909 0.00 0.00 0.00 4.52
1875 1965 3.945981 TGTAGTTATGTTCTCGTGGCA 57.054 42.857 0.00 0.00 0.00 4.92
1876 1966 4.267928 GTCATGTAGTTATGTTCTCGTGGC 59.732 45.833 0.00 0.00 0.00 5.01
1877 1967 4.804139 GGTCATGTAGTTATGTTCTCGTGG 59.196 45.833 0.00 0.00 0.00 4.94
1878 1968 5.407502 TGGTCATGTAGTTATGTTCTCGTG 58.592 41.667 0.00 0.00 0.00 4.35
1879 1969 5.654603 TGGTCATGTAGTTATGTTCTCGT 57.345 39.130 0.00 0.00 0.00 4.18
1880 1970 6.100004 AGTTGGTCATGTAGTTATGTTCTCG 58.900 40.000 0.00 0.00 0.00 4.04
1901 1991 9.131791 ACTGAAATTGTGGACAACTTTATAGTT 57.868 29.630 0.00 0.00 45.40 2.24
1902 1992 8.691661 ACTGAAATTGTGGACAACTTTATAGT 57.308 30.769 0.00 3.87 38.86 2.12
1903 1993 9.003658 AGACTGAAATTGTGGACAACTTTATAG 57.996 33.333 0.00 3.41 38.86 1.31
1904 1994 8.918202 AGACTGAAATTGTGGACAACTTTATA 57.082 30.769 0.00 0.00 38.86 0.98
1905 1995 7.823745 AGACTGAAATTGTGGACAACTTTAT 57.176 32.000 0.00 0.00 38.86 1.40
1906 1996 7.639113 AAGACTGAAATTGTGGACAACTTTA 57.361 32.000 0.00 0.00 38.86 1.85
1907 1997 6.530019 AAGACTGAAATTGTGGACAACTTT 57.470 33.333 0.00 0.00 38.86 2.66
1908 1998 6.152661 TGAAAGACTGAAATTGTGGACAACTT 59.847 34.615 0.00 0.00 38.86 2.66
1909 1999 5.652014 TGAAAGACTGAAATTGTGGACAACT 59.348 36.000 0.00 0.00 38.86 3.16
1910 2000 5.890334 TGAAAGACTGAAATTGTGGACAAC 58.110 37.500 0.00 0.00 38.86 3.32
1911 2001 5.885352 TCTGAAAGACTGAAATTGTGGACAA 59.115 36.000 0.00 0.00 38.67 3.18
1984 2074 6.015282 ACGGGGGTAAAATATAGTCTAGAGG 58.985 44.000 0.00 0.00 0.00 3.69
2016 2107 7.931407 GGAGAATTGGAAAAGGTTAACAAATGT 59.069 33.333 8.10 0.00 0.00 2.71
2169 2316 6.103205 ACATGGGATAAAGGGTACTGATGAAT 59.897 38.462 0.00 0.00 0.00 2.57
2188 2335 3.257873 TGCTTTTCATTGGTACACATGGG 59.742 43.478 0.00 0.00 39.29 4.00
2269 2416 4.075963 TCACCTTAAACTACGCCACTTT 57.924 40.909 0.00 0.00 0.00 2.66
2272 2419 5.366829 AAATTCACCTTAAACTACGCCAC 57.633 39.130 0.00 0.00 0.00 5.01
2298 2445 7.524717 ACTCTGCAAGGTTTGTACAAAATAT 57.475 32.000 22.14 8.74 31.33 1.28
2299 2446 6.952773 ACTCTGCAAGGTTTGTACAAAATA 57.047 33.333 22.14 0.00 31.33 1.40
2300 2447 5.852282 ACTCTGCAAGGTTTGTACAAAAT 57.148 34.783 22.14 11.53 31.33 1.82
2301 2448 5.883673 ACTACTCTGCAAGGTTTGTACAAAA 59.116 36.000 22.14 5.36 31.33 2.44
2302 2449 5.433526 ACTACTCTGCAAGGTTTGTACAAA 58.566 37.500 17.01 17.01 0.00 2.83
2303 2450 5.031066 ACTACTCTGCAAGGTTTGTACAA 57.969 39.130 3.59 3.59 0.00 2.41
2304 2451 4.682778 ACTACTCTGCAAGGTTTGTACA 57.317 40.909 0.00 0.00 0.00 2.90
2305 2452 6.649557 ACATAACTACTCTGCAAGGTTTGTAC 59.350 38.462 0.00 0.00 0.00 2.90
2306 2453 6.765403 ACATAACTACTCTGCAAGGTTTGTA 58.235 36.000 0.00 0.00 0.00 2.41
2307 2454 5.621193 ACATAACTACTCTGCAAGGTTTGT 58.379 37.500 0.00 0.00 0.00 2.83
2308 2455 6.560253 AACATAACTACTCTGCAAGGTTTG 57.440 37.500 0.00 0.00 0.00 2.93
2309 2456 8.863872 ATAAACATAACTACTCTGCAAGGTTT 57.136 30.769 0.00 0.00 0.00 3.27
2310 2457 8.322091 AGATAAACATAACTACTCTGCAAGGTT 58.678 33.333 0.00 0.00 0.00 3.50
2311 2458 7.852263 AGATAAACATAACTACTCTGCAAGGT 58.148 34.615 0.00 0.00 0.00 3.50
2312 2459 8.723942 AAGATAAACATAACTACTCTGCAAGG 57.276 34.615 0.00 0.00 0.00 3.61
2314 2461 9.944376 AGAAAGATAAACATAACTACTCTGCAA 57.056 29.630 0.00 0.00 0.00 4.08
2315 2462 9.944376 AAGAAAGATAAACATAACTACTCTGCA 57.056 29.630 0.00 0.00 0.00 4.41
2318 2465 9.804758 CCGAAGAAAGATAAACATAACTACTCT 57.195 33.333 0.00 0.00 0.00 3.24
2319 2466 9.798994 TCCGAAGAAAGATAAACATAACTACTC 57.201 33.333 0.00 0.00 0.00 2.59
2322 2469 9.374838 GGTTCCGAAGAAAGATAAACATAACTA 57.625 33.333 0.00 0.00 32.58 2.24
2323 2470 8.101419 AGGTTCCGAAGAAAGATAAACATAACT 58.899 33.333 0.00 0.00 32.58 2.24
2324 2471 8.175716 CAGGTTCCGAAGAAAGATAAACATAAC 58.824 37.037 0.00 0.00 32.58 1.89
2325 2472 8.098286 TCAGGTTCCGAAGAAAGATAAACATAA 58.902 33.333 0.00 0.00 32.58 1.90
2326 2473 7.617225 TCAGGTTCCGAAGAAAGATAAACATA 58.383 34.615 0.00 0.00 32.58 2.29
2378 2525 7.269477 AGGCTAATCAAATCTGTCTTTATGC 57.731 36.000 0.00 0.00 0.00 3.14
2443 2590 3.489355 CCACATTGCTCCTGCCATATAA 58.511 45.455 0.00 0.00 38.71 0.98
2483 2630 6.985117 TCACTACTGACATAAAAGTAACGGT 58.015 36.000 0.00 0.00 0.00 4.83
2564 2711 6.599244 AGTGTCAGTGATTGTTTTTCTCAAGA 59.401 34.615 0.00 0.00 0.00 3.02
2611 2758 3.636300 CCTCCAAAAACTTGGTCACATCA 59.364 43.478 3.92 0.00 42.62 3.07
2705 2852 5.133221 AGGCTAAATCACAAGTTCACAACT 58.867 37.500 0.00 0.00 45.46 3.16
2734 2881 1.134729 GGGCCCATGTGTTAATGCAAG 60.135 52.381 19.95 0.00 0.00 4.01
2747 2894 0.116143 TTGGCTGTAAAAGGGCCCAT 59.884 50.000 27.56 10.06 44.71 4.00
2776 2923 2.093500 CCCGACATCCTCAAAGTCATCA 60.093 50.000 0.00 0.00 32.68 3.07
2846 2993 2.095364 CAGGTATCGTAGCCGTATCCAC 60.095 54.545 0.00 0.00 35.01 4.02
2851 2998 2.334307 GGCAGGTATCGTAGCCGTA 58.666 57.895 0.00 0.00 37.41 4.02
2857 3004 0.683828 TTGTCCGGGCAGGTATCGTA 60.684 55.000 9.61 0.00 41.99 3.43
2875 3022 0.669625 GCTTCGGCGGAGTGTACTTT 60.670 55.000 17.90 0.00 0.00 2.66
2923 3070 4.718276 TGGAGGATCTTGATGATGAACTCA 59.282 41.667 0.00 0.00 35.14 3.41
3131 3281 2.949451 ACCGTTGCAACATTCAAACA 57.051 40.000 28.01 0.00 0.00 2.83
3132 3282 4.143009 ACAAAACCGTTGCAACATTCAAAC 60.143 37.500 28.01 0.24 0.00 2.93
3133 3283 3.997021 ACAAAACCGTTGCAACATTCAAA 59.003 34.783 28.01 0.00 0.00 2.69
3193 3343 8.928733 CAATTTCAGTCCCATCAATTTAAGTTG 58.071 33.333 4.40 4.40 0.00 3.16
3263 3413 4.499037 AGAACCGGTGCTTAATTTTCAC 57.501 40.909 10.19 0.00 0.00 3.18
3264 3414 6.827586 AATAGAACCGGTGCTTAATTTTCA 57.172 33.333 23.37 0.00 0.00 2.69
3298 3448 6.355638 CAAAACATCGTGACTGTTCTTCTAC 58.644 40.000 0.00 0.00 35.84 2.59
3300 3450 4.273480 CCAAAACATCGTGACTGTTCTTCT 59.727 41.667 0.00 0.00 35.84 2.85
3301 3451 4.272504 TCCAAAACATCGTGACTGTTCTTC 59.727 41.667 0.00 0.00 35.84 2.87
3340 3490 1.450134 CATGCCTCGCCTTGTAGCA 60.450 57.895 0.00 0.00 37.94 3.49
3351 3501 2.042464 TCTCACCCATCTACATGCCTC 58.958 52.381 0.00 0.00 0.00 4.70
3544 3694 4.269363 GTGTACCATGTGTTTATACTCCGC 59.731 45.833 0.00 0.00 0.00 5.54
3592 3742 5.362430 AGGCACCAGAGTTTTCAAACAATAA 59.638 36.000 5.26 0.00 41.30 1.40
3650 3800 3.632145 AGCCAAAATGAAAACAGACGACT 59.368 39.130 0.00 0.00 0.00 4.18
3651 3801 3.964909 AGCCAAAATGAAAACAGACGAC 58.035 40.909 0.00 0.00 0.00 4.34
3652 3802 4.097135 TGAAGCCAAAATGAAAACAGACGA 59.903 37.500 0.00 0.00 0.00 4.20
3653 3803 4.358851 TGAAGCCAAAATGAAAACAGACG 58.641 39.130 0.00 0.00 0.00 4.18
3654 3804 5.812127 ACTTGAAGCCAAAATGAAAACAGAC 59.188 36.000 0.00 0.00 0.00 3.51
3655 3805 5.976458 ACTTGAAGCCAAAATGAAAACAGA 58.024 33.333 0.00 0.00 0.00 3.41
3656 3806 5.051508 CGACTTGAAGCCAAAATGAAAACAG 60.052 40.000 0.00 0.00 0.00 3.16
3657 3807 4.803088 CGACTTGAAGCCAAAATGAAAACA 59.197 37.500 0.00 0.00 0.00 2.83
3658 3808 5.040635 TCGACTTGAAGCCAAAATGAAAAC 58.959 37.500 0.00 0.00 0.00 2.43
3659 3809 5.255710 TCGACTTGAAGCCAAAATGAAAA 57.744 34.783 0.00 0.00 0.00 2.29
3660 3810 4.909696 TCGACTTGAAGCCAAAATGAAA 57.090 36.364 0.00 0.00 0.00 2.69
3661 3811 4.909696 TTCGACTTGAAGCCAAAATGAA 57.090 36.364 0.00 0.00 31.44 2.57
3662 3812 5.452078 AATTCGACTTGAAGCCAAAATGA 57.548 34.783 0.00 0.00 40.65 2.57
3663 3813 6.200665 TGAAAATTCGACTTGAAGCCAAAATG 59.799 34.615 0.00 0.00 40.65 2.32
3664 3814 6.279882 TGAAAATTCGACTTGAAGCCAAAAT 58.720 32.000 0.00 0.00 40.65 1.82
3665 3815 5.655488 TGAAAATTCGACTTGAAGCCAAAA 58.345 33.333 0.00 0.00 40.65 2.44
3666 3816 5.163561 ACTGAAAATTCGACTTGAAGCCAAA 60.164 36.000 0.00 0.00 40.65 3.28
3667 3817 4.338118 ACTGAAAATTCGACTTGAAGCCAA 59.662 37.500 0.00 0.00 40.65 4.52
3668 3818 3.882888 ACTGAAAATTCGACTTGAAGCCA 59.117 39.130 0.00 0.00 40.65 4.75
3669 3819 4.467735 GACTGAAAATTCGACTTGAAGCC 58.532 43.478 0.00 0.00 40.65 4.35
3670 3820 4.144555 CGACTGAAAATTCGACTTGAAGC 58.855 43.478 0.00 0.00 40.65 3.86
3671 3821 5.330271 ACGACTGAAAATTCGACTTGAAG 57.670 39.130 0.00 0.00 40.65 3.02
3672 3822 5.555631 CGAACGACTGAAAATTCGACTTGAA 60.556 40.000 0.00 0.00 45.18 2.69
3673 3823 4.085261 CGAACGACTGAAAATTCGACTTGA 60.085 41.667 0.00 0.00 45.18 3.02
3674 3824 4.085261 TCGAACGACTGAAAATTCGACTTG 60.085 41.667 3.96 0.00 45.73 3.16
3675 3825 4.046462 TCGAACGACTGAAAATTCGACTT 58.954 39.130 3.96 0.00 45.73 3.01
3676 3826 3.635331 TCGAACGACTGAAAATTCGACT 58.365 40.909 3.96 0.00 45.73 4.18
3679 3829 4.941604 TGAATCGAACGACTGAAAATTCG 58.058 39.130 0.00 0.00 44.04 3.34
3680 3830 5.916969 ACTGAATCGAACGACTGAAAATTC 58.083 37.500 0.00 0.00 0.00 2.17
3681 3831 5.924475 ACTGAATCGAACGACTGAAAATT 57.076 34.783 0.00 0.00 0.00 1.82
3682 3832 5.696724 AGAACTGAATCGAACGACTGAAAAT 59.303 36.000 0.00 0.00 0.00 1.82
3683 3833 5.047847 AGAACTGAATCGAACGACTGAAAA 58.952 37.500 0.00 0.00 0.00 2.29
3684 3834 4.444388 CAGAACTGAATCGAACGACTGAAA 59.556 41.667 0.00 0.00 0.00 2.69
3685 3835 3.981416 CAGAACTGAATCGAACGACTGAA 59.019 43.478 0.00 0.00 0.00 3.02
3686 3836 3.252458 TCAGAACTGAATCGAACGACTGA 59.748 43.478 1.79 3.56 36.53 3.41
3687 3837 3.565516 TCAGAACTGAATCGAACGACTG 58.434 45.455 1.79 1.25 36.53 3.51
3688 3838 3.502595 TCTCAGAACTGAATCGAACGACT 59.497 43.478 6.01 0.00 39.39 4.18
3689 3839 3.822996 TCTCAGAACTGAATCGAACGAC 58.177 45.455 6.01 0.00 39.39 4.34
3690 3840 4.396478 AGATCTCAGAACTGAATCGAACGA 59.604 41.667 6.01 0.00 39.39 3.85
3691 3841 4.498681 CAGATCTCAGAACTGAATCGAACG 59.501 45.833 6.05 0.00 39.39 3.95
3692 3842 4.267452 GCAGATCTCAGAACTGAATCGAAC 59.733 45.833 15.89 0.00 39.39 3.95
3693 3843 4.428209 GCAGATCTCAGAACTGAATCGAA 58.572 43.478 15.89 0.00 39.39 3.71
3694 3844 3.488216 CGCAGATCTCAGAACTGAATCGA 60.488 47.826 15.89 0.00 39.39 3.59
3695 3845 2.788233 CGCAGATCTCAGAACTGAATCG 59.212 50.000 15.89 6.14 39.39 3.34
3696 3846 2.539274 GCGCAGATCTCAGAACTGAATC 59.461 50.000 15.89 10.75 39.39 2.52
3697 3847 2.168106 AGCGCAGATCTCAGAACTGAAT 59.832 45.455 15.89 0.00 39.39 2.57
3698 3848 1.547820 AGCGCAGATCTCAGAACTGAA 59.452 47.619 15.89 0.00 39.39 3.02
3699 3849 1.135170 CAGCGCAGATCTCAGAACTGA 60.135 52.381 15.89 4.45 34.99 3.41
3700 3850 1.279152 CAGCGCAGATCTCAGAACTG 58.721 55.000 11.47 7.59 35.90 3.16
3701 3851 0.175302 CCAGCGCAGATCTCAGAACT 59.825 55.000 11.47 0.00 0.00 3.01
3702 3852 0.108424 ACCAGCGCAGATCTCAGAAC 60.108 55.000 11.47 0.00 0.00 3.01
3703 3853 0.108472 CACCAGCGCAGATCTCAGAA 60.108 55.000 11.47 0.00 0.00 3.02
3704 3854 1.253593 ACACCAGCGCAGATCTCAGA 61.254 55.000 11.47 0.00 0.00 3.27
3705 3855 1.082679 CACACCAGCGCAGATCTCAG 61.083 60.000 11.47 0.00 0.00 3.35
3706 3856 1.079612 CACACCAGCGCAGATCTCA 60.080 57.895 11.47 0.00 0.00 3.27
3707 3857 1.812922 CCACACCAGCGCAGATCTC 60.813 63.158 11.47 0.00 0.00 2.75
3708 3858 2.267006 CCACACCAGCGCAGATCT 59.733 61.111 11.47 0.00 0.00 2.75
3709 3859 3.503363 GCCACACCAGCGCAGATC 61.503 66.667 11.47 0.00 0.00 2.75
3710 3860 4.025858 AGCCACACCAGCGCAGAT 62.026 61.111 11.47 0.00 34.64 2.90
3711 3861 4.994471 CAGCCACACCAGCGCAGA 62.994 66.667 11.47 0.00 34.64 4.26
3712 3862 4.994471 TCAGCCACACCAGCGCAG 62.994 66.667 11.47 0.00 34.64 5.18
3713 3863 4.560743 TTCAGCCACACCAGCGCA 62.561 61.111 11.47 0.00 34.64 6.09
3714 3864 4.030452 GTTCAGCCACACCAGCGC 62.030 66.667 0.00 0.00 34.64 5.92
3715 3865 1.447317 AAAGTTCAGCCACACCAGCG 61.447 55.000 0.00 0.00 34.64 5.18
3716 3866 0.746659 AAAAGTTCAGCCACACCAGC 59.253 50.000 0.00 0.00 0.00 4.85
3717 3867 1.002468 CGAAAAGTTCAGCCACACCAG 60.002 52.381 0.00 0.00 0.00 4.00
3718 3868 1.021202 CGAAAAGTTCAGCCACACCA 58.979 50.000 0.00 0.00 0.00 4.17
3719 3869 0.310854 CCGAAAAGTTCAGCCACACC 59.689 55.000 0.00 0.00 0.00 4.16
3720 3870 0.310854 CCCGAAAAGTTCAGCCACAC 59.689 55.000 0.00 0.00 0.00 3.82
3721 3871 1.452145 GCCCGAAAAGTTCAGCCACA 61.452 55.000 0.00 0.00 0.00 4.17
3722 3872 1.285950 GCCCGAAAAGTTCAGCCAC 59.714 57.895 0.00 0.00 0.00 5.01
3723 3873 1.901464 GGCCCGAAAAGTTCAGCCA 60.901 57.895 12.03 0.00 44.19 4.75
3724 3874 2.636412 GGGCCCGAAAAGTTCAGCC 61.636 63.158 5.69 9.49 44.10 4.85
3725 3875 2.962569 GGGCCCGAAAAGTTCAGC 59.037 61.111 5.69 0.00 0.00 4.26
3726 3876 3.263941 CGGGCCCGAAAAGTTCAG 58.736 61.111 41.82 4.63 42.83 3.02
3762 3912 4.946160 AATGACCCAAAAGGATCCACTA 57.054 40.909 15.82 0.00 39.89 2.74
3796 3946 0.462225 TCCACGCGACACTGGAAAAA 60.462 50.000 15.93 0.00 33.39 1.94
3805 3955 0.393944 ACTAGATCCTCCACGCGACA 60.394 55.000 15.93 0.00 0.00 4.35
3825 3975 3.969976 TGGATAAGGATTGAGGAGGACAG 59.030 47.826 0.00 0.00 0.00 3.51
3836 3986 1.691976 TCGTCGCCATGGATAAGGATT 59.308 47.619 18.40 0.00 0.00 3.01
3866 4016 4.225340 CTCTCCGTCGTCGCCTCG 62.225 72.222 0.00 0.00 35.54 4.63
3871 4021 0.728466 GTTTGACCTCTCCGTCGTCG 60.728 60.000 0.00 0.00 35.40 5.12
3877 4027 3.601443 ATCTGAAGTTTGACCTCTCCG 57.399 47.619 0.00 0.00 0.00 4.63
3901 4072 3.505386 AGGCGATATCCACAGAGAAGAT 58.495 45.455 0.00 0.00 0.00 2.40
3909 4080 1.416401 GAAAGGGAGGCGATATCCACA 59.584 52.381 0.00 0.00 38.70 4.17
3910 4081 1.694696 AGAAAGGGAGGCGATATCCAC 59.305 52.381 0.00 0.00 38.70 4.02
3919 4091 1.280457 TGGAGAGAAGAAAGGGAGGC 58.720 55.000 0.00 0.00 0.00 4.70
3943 4115 3.011517 GCTGGAGGAGAGGGGCAA 61.012 66.667 0.00 0.00 0.00 4.52
3962 4134 2.689691 GCCATGGTAGGGAAGGGCA 61.690 63.158 14.67 0.00 41.02 5.36
3968 4140 2.690881 AAGGCGCCATGGTAGGGA 60.691 61.111 31.54 0.00 0.00 4.20
3981 4153 1.119684 GGGAAGGAGAGAGAGAAGGC 58.880 60.000 0.00 0.00 0.00 4.35
3991 4163 1.004758 CCATGGGAGGGGAAGGAGA 59.995 63.158 2.85 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.