Multiple sequence alignment - TraesCS5A01G138400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G138400 chr5A 100.000 8903 0 0 1 8903 310968372 310977274 0.000000e+00 16441.0
1 TraesCS5A01G138400 chr5D 96.911 4014 111 9 165 4170 241244313 241248321 0.000000e+00 6713.0
2 TraesCS5A01G138400 chr5D 95.704 1094 38 2 5242 6335 241250239 241251323 0.000000e+00 1751.0
3 TraesCS5A01G138400 chr5D 95.283 954 20 3 4166 5118 241248660 241249589 0.000000e+00 1489.0
4 TraesCS5A01G138400 chr5D 88.176 592 33 16 7748 8339 241251315 241251869 0.000000e+00 671.0
5 TraesCS5A01G138400 chr5D 85.919 419 42 11 8430 8836 241252004 241252417 1.780000e-116 431.0
6 TraesCS5A01G138400 chr5D 83.333 156 21 3 8376 8528 510907287 510907440 1.210000e-28 139.0
7 TraesCS5A01G138400 chr5D 90.698 86 7 1 8815 8900 241252433 241252517 7.310000e-21 113.0
8 TraesCS5A01G138400 chr5D 93.023 43 3 0 6332 6374 520350476 520350518 7.460000e-06 63.9
9 TraesCS5A01G138400 chr5B 96.557 3950 117 11 235 4170 262430646 262426702 0.000000e+00 6523.0
10 TraesCS5A01G138400 chr5B 94.155 1095 49 5 5242 6332 262424860 262423777 0.000000e+00 1653.0
11 TraesCS5A01G138400 chr5B 97.701 957 21 1 4166 5121 262426377 262425421 0.000000e+00 1644.0
12 TraesCS5A01G138400 chr5B 92.195 410 18 5 7753 8162 262423778 262423383 1.300000e-157 568.0
13 TraesCS5A01G138400 chr5B 96.063 127 5 0 5119 5245 262425038 262424912 3.260000e-49 207.0
14 TraesCS5A01G138400 chr5B 91.579 95 8 0 148 242 262432258 262432164 2.020000e-26 132.0
15 TraesCS5A01G138400 chr5B 91.176 68 5 1 8696 8762 262423331 262423264 3.420000e-14 91.6
16 TraesCS5A01G138400 chr5B 94.444 36 2 0 7688 7723 145928826 145928861 1.000000e-03 56.5
17 TraesCS5A01G138400 chr2A 99.717 1414 4 0 6334 7747 457444915 457446328 0.000000e+00 2590.0
18 TraesCS5A01G138400 chr2A 74.557 1242 215 52 6335 7543 710769668 710768495 4.900000e-122 449.0
19 TraesCS5A01G138400 chr2A 77.966 295 42 14 6558 6841 58670918 58671200 7.150000e-36 163.0
20 TraesCS5A01G138400 chr1B 98.798 1414 17 0 6335 7748 678774475 678775888 0.000000e+00 2518.0
21 TraesCS5A01G138400 chr1B 94.444 36 2 0 7688 7723 683368431 683368466 1.000000e-03 56.5
22 TraesCS5A01G138400 chr6B 94.163 1422 72 7 6335 7747 130911295 130909876 0.000000e+00 2156.0
23 TraesCS5A01G138400 chr6B 77.966 295 42 14 6558 6841 565424332 565424614 7.150000e-36 163.0
24 TraesCS5A01G138400 chr3D 92.066 1210 77 6 6335 7541 580901980 580903173 0.000000e+00 1685.0
25 TraesCS5A01G138400 chr3D 91.667 228 14 3 7525 7747 580903186 580903413 2.410000e-80 311.0
26 TraesCS5A01G138400 chr6A 92.802 1042 63 9 6335 7371 581004063 581003029 0.000000e+00 1498.0
27 TraesCS5A01G138400 chr6A 93.979 382 18 3 7371 7747 580993263 580992882 2.790000e-159 573.0
28 TraesCS5A01G138400 chr2B 83.767 961 99 21 6334 7290 621773914 621773007 0.000000e+00 857.0
29 TraesCS5A01G138400 chr3B 75.513 1462 248 61 6335 7743 818860804 818859400 4.570000e-172 616.0
30 TraesCS5A01G138400 chr3A 77.356 870 148 27 6342 7189 178843089 178842247 3.760000e-128 470.0
31 TraesCS5A01G138400 chr3A 100.000 30 0 0 7694 7723 627978305 627978276 1.000000e-03 56.5
32 TraesCS5A01G138400 chr7B 79.903 617 90 19 6512 7101 643476965 643476356 1.070000e-113 422.0
33 TraesCS5A01G138400 chr7B 71.915 470 81 28 7089 7543 643293399 643293832 1.230000e-13 89.8
34 TraesCS5A01G138400 chr7B 77.519 129 21 6 7418 7543 643472863 643472740 4.460000e-08 71.3
35 TraesCS5A01G138400 chr4D 78.971 447 75 13 3116 3548 109272751 109273192 4.070000e-73 287.0
36 TraesCS5A01G138400 chr4D 85.909 220 28 1 1745 1964 109270778 109270994 1.930000e-56 231.0
37 TraesCS5A01G138400 chr4D 89.412 170 17 1 4594 4762 109274131 109274300 7.000000e-51 213.0
38 TraesCS5A01G138400 chr4D 89.744 156 16 0 3923 4078 109273468 109273623 5.450000e-47 200.0
39 TraesCS5A01G138400 chr4D 81.343 134 23 2 3924 4056 111598741 111598609 3.400000e-19 108.0
40 TraesCS5A01G138400 chr4D 95.238 63 3 0 1329 1391 109270659 109270721 5.690000e-17 100.0
41 TraesCS5A01G138400 chr4A 78.788 429 75 11 3116 3531 467248844 467248419 3.170000e-69 274.0
42 TraesCS5A01G138400 chr4A 84.977 213 32 0 1752 1964 467250618 467250406 5.410000e-52 217.0
43 TraesCS5A01G138400 chr4A 90.385 156 15 0 3923 4078 467248128 467247973 1.170000e-48 206.0
44 TraesCS5A01G138400 chr4A 88.372 172 15 4 4594 4762 467247453 467247284 1.520000e-47 202.0
45 TraesCS5A01G138400 chr4A 81.955 133 24 0 3924 4056 465530822 465530954 7.310000e-21 113.0
46 TraesCS5A01G138400 chr4A 95.455 66 3 0 1329 1394 467250775 467250710 1.220000e-18 106.0
47 TraesCS5A01G138400 chr4B 85.446 213 31 0 1752 1964 167354470 167354258 1.160000e-53 222.0
48 TraesCS5A01G138400 chr4B 89.412 170 17 1 4594 4762 167350923 167350754 7.000000e-51 213.0
49 TraesCS5A01G138400 chr4B 89.744 156 16 0 3923 4078 167351603 167351448 5.450000e-47 200.0
50 TraesCS5A01G138400 chr4B 81.203 133 25 0 3924 4056 172391599 172391467 3.400000e-19 108.0
51 TraesCS5A01G138400 chr4B 95.455 66 3 0 1329 1394 167354627 167354562 1.220000e-18 106.0
52 TraesCS5A01G138400 chr4B 94.444 36 2 0 7688 7723 505417638 505417673 1.000000e-03 56.5
53 TraesCS5A01G138400 chrUn 84.746 177 26 1 8163 8338 45879348 45879172 9.190000e-40 176.0
54 TraesCS5A01G138400 chr6D 86.875 160 18 3 8163 8320 389300609 389300767 9.190000e-40 176.0
55 TraesCS5A01G138400 chr7A 81.818 176 30 2 8161 8335 272926661 272926487 7.200000e-31 147.0
56 TraesCS5A01G138400 chr7A 96.875 32 1 0 460 491 27978084 27978053 4.000000e-03 54.7
57 TraesCS5A01G138400 chr7D 79.545 176 35 1 8161 8335 254321395 254321220 3.370000e-24 124.0
58 TraesCS5A01G138400 chr7D 100.000 32 0 0 460 491 27547529 27547498 9.650000e-05 60.2
59 TraesCS5A01G138400 chr1A 86.301 73 10 0 8420 8492 307046981 307047053 7.410000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G138400 chr5A 310968372 310977274 8902 False 16441.000000 16441 100.000000 1 8903 1 chr5A.!!$F1 8902
1 TraesCS5A01G138400 chr5D 241244313 241252517 8204 False 1861.333333 6713 92.115167 165 8900 6 chr5D.!!$F3 8735
2 TraesCS5A01G138400 chr5B 262423264 262432258 8994 True 1545.514286 6523 94.203714 148 8762 7 chr5B.!!$R1 8614
3 TraesCS5A01G138400 chr2A 457444915 457446328 1413 False 2590.000000 2590 99.717000 6334 7747 1 chr2A.!!$F2 1413
4 TraesCS5A01G138400 chr2A 710768495 710769668 1173 True 449.000000 449 74.557000 6335 7543 1 chr2A.!!$R1 1208
5 TraesCS5A01G138400 chr1B 678774475 678775888 1413 False 2518.000000 2518 98.798000 6335 7748 1 chr1B.!!$F1 1413
6 TraesCS5A01G138400 chr6B 130909876 130911295 1419 True 2156.000000 2156 94.163000 6335 7747 1 chr6B.!!$R1 1412
7 TraesCS5A01G138400 chr3D 580901980 580903413 1433 False 998.000000 1685 91.866500 6335 7747 2 chr3D.!!$F1 1412
8 TraesCS5A01G138400 chr6A 581003029 581004063 1034 True 1498.000000 1498 92.802000 6335 7371 1 chr6A.!!$R2 1036
9 TraesCS5A01G138400 chr2B 621773007 621773914 907 True 857.000000 857 83.767000 6334 7290 1 chr2B.!!$R1 956
10 TraesCS5A01G138400 chr3B 818859400 818860804 1404 True 616.000000 616 75.513000 6335 7743 1 chr3B.!!$R1 1408
11 TraesCS5A01G138400 chr3A 178842247 178843089 842 True 470.000000 470 77.356000 6342 7189 1 chr3A.!!$R1 847
12 TraesCS5A01G138400 chr7B 643472740 643476965 4225 True 246.650000 422 78.711000 6512 7543 2 chr7B.!!$R1 1031
13 TraesCS5A01G138400 chr4D 109270659 109274300 3641 False 206.200000 287 87.854800 1329 4762 5 chr4D.!!$F1 3433
14 TraesCS5A01G138400 chr4A 467247284 467250775 3491 True 201.000000 274 87.595400 1329 4762 5 chr4A.!!$R1 3433

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
858 2393 0.748005 CCAGGGTCGGCCTTATTGTG 60.748 60.0 5.77 0.0 34.45 3.33 F
1020 2555 0.395862 TGGGTTCCAAAGAAACGCCA 60.396 50.0 0.00 0.0 40.92 5.69 F
1132 2667 0.883833 CCTTGGTGTTGATGCCTCAC 59.116 55.0 0.00 0.0 0.00 3.51 F
2506 4063 1.080638 ATAGTGTTTTGCCCCCTCCA 58.919 50.0 0.00 0.0 0.00 3.86 F
3174 5880 1.274703 ACGCATTCAGGTGGAGGGAT 61.275 55.0 0.00 0.0 0.00 3.85 F
4416 7563 0.389391 AGCATTCCGTACCCGAGATG 59.611 55.0 0.00 0.0 35.63 2.90 F
5128 8707 0.108992 TACGCTTACAGTTCTGCCGG 60.109 55.0 0.00 0.0 0.00 6.13 F
5801 9522 0.184451 ACTCCTGGCAGCAATATGGG 59.816 55.0 9.56 0.0 0.00 4.00 F
6228 9949 1.350193 ATGCGTCGCAAAGTGTAGAG 58.650 50.0 25.66 0.0 43.62 2.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2381 3937 0.248907 CTGGCGTACACATACCTCCG 60.249 60.000 0.00 0.00 0.00 4.63 R
2484 4041 3.021695 GGAGGGGGCAAAACACTATTAC 58.978 50.000 0.00 0.00 0.00 1.89 R
3118 5824 3.888930 CCTTCAACAAAGCAACCTCCTAA 59.111 43.478 0.00 0.00 33.29 2.69 R
4300 7447 0.179001 CCTTGGGACCTTGGAAACGT 60.179 55.000 0.00 0.00 0.00 3.99 R
5118 8312 0.613853 TAGGTGTAGCCGGCAGAACT 60.614 55.000 31.54 22.12 43.70 3.01 R
6278 9999 0.027586 ACAAACGAACAACAGCGCTC 59.972 50.000 7.13 0.00 0.00 5.03 R
6290 10011 1.138069 TGAGCTGACCAGAACAAACGA 59.862 47.619 0.00 0.00 0.00 3.85 R
7749 14802 3.190079 TCATCATAGTCAGACGCAAAGC 58.810 45.455 0.00 0.00 0.00 3.51 R
8131 15185 0.387239 CTTTCCTTTTGCCTTCGCCG 60.387 55.000 0.00 0.00 0.00 6.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.792749 GGCGACCCAATTTAATTGACG 58.207 47.619 18.13 18.44 42.83 4.35
26 27 2.420722 GGCGACCCAATTTAATTGACGA 59.579 45.455 18.13 0.00 42.83 4.20
27 28 3.422655 GCGACCCAATTTAATTGACGAC 58.577 45.455 18.13 12.07 42.83 4.34
28 29 3.729762 GCGACCCAATTTAATTGACGACC 60.730 47.826 18.13 6.53 42.83 4.79
29 30 3.687698 CGACCCAATTTAATTGACGACCT 59.312 43.478 18.13 0.00 42.83 3.85
30 31 4.201783 CGACCCAATTTAATTGACGACCTC 60.202 45.833 18.13 3.64 42.83 3.85
31 32 4.658063 ACCCAATTTAATTGACGACCTCA 58.342 39.130 18.13 0.00 42.83 3.86
32 33 5.074115 ACCCAATTTAATTGACGACCTCAA 58.926 37.500 18.13 0.00 43.28 3.02
42 43 6.624352 ATTGACGACCTCAATTGATTATGG 57.376 37.500 8.96 9.19 45.89 2.74
43 44 5.351948 TGACGACCTCAATTGATTATGGA 57.648 39.130 16.18 0.00 0.00 3.41
44 45 5.116180 TGACGACCTCAATTGATTATGGAC 58.884 41.667 16.18 10.15 0.00 4.02
45 46 5.104941 TGACGACCTCAATTGATTATGGACT 60.105 40.000 16.18 0.00 0.00 3.85
46 47 5.360591 ACGACCTCAATTGATTATGGACTC 58.639 41.667 16.18 5.56 0.00 3.36
47 48 5.129485 ACGACCTCAATTGATTATGGACTCT 59.871 40.000 16.18 0.00 0.00 3.24
48 49 6.051717 CGACCTCAATTGATTATGGACTCTT 58.948 40.000 16.18 0.00 0.00 2.85
49 50 6.540189 CGACCTCAATTGATTATGGACTCTTT 59.460 38.462 16.18 0.00 0.00 2.52
50 51 7.710907 CGACCTCAATTGATTATGGACTCTTTA 59.289 37.037 16.18 0.00 0.00 1.85
51 52 9.396022 GACCTCAATTGATTATGGACTCTTTAA 57.604 33.333 16.18 0.00 0.00 1.52
52 53 9.753674 ACCTCAATTGATTATGGACTCTTTAAA 57.246 29.630 16.18 0.00 0.00 1.52
62 63 9.868160 ATTATGGACTCTTTAAAAATAGGGAGG 57.132 33.333 5.27 0.00 0.00 4.30
63 64 6.074698 TGGACTCTTTAAAAATAGGGAGGG 57.925 41.667 5.27 0.00 0.00 4.30
64 65 5.554350 TGGACTCTTTAAAAATAGGGAGGGT 59.446 40.000 5.27 0.00 0.00 4.34
65 66 6.046286 TGGACTCTTTAAAAATAGGGAGGGTT 59.954 38.462 5.27 0.00 0.00 4.11
66 67 7.240194 TGGACTCTTTAAAAATAGGGAGGGTTA 59.760 37.037 5.27 0.00 0.00 2.85
67 68 8.280084 GGACTCTTTAAAAATAGGGAGGGTTAT 58.720 37.037 5.27 0.00 0.00 1.89
97 98 9.528489 AAATTGATACAGGTAACCAAATGTAGT 57.472 29.630 0.00 0.00 32.09 2.73
98 99 7.915293 TTGATACAGGTAACCAAATGTAGTG 57.085 36.000 0.00 0.00 32.09 2.74
99 100 7.011499 TGATACAGGTAACCAAATGTAGTGT 57.989 36.000 0.00 0.00 32.09 3.55
100 101 7.455058 TGATACAGGTAACCAAATGTAGTGTT 58.545 34.615 0.00 0.00 32.09 3.32
101 102 7.940137 TGATACAGGTAACCAAATGTAGTGTTT 59.060 33.333 0.00 0.00 32.09 2.83
102 103 8.700439 ATACAGGTAACCAAATGTAGTGTTTT 57.300 30.769 0.00 0.00 32.09 2.43
103 104 7.034685 ACAGGTAACCAAATGTAGTGTTTTC 57.965 36.000 0.00 0.00 37.17 2.29
104 105 6.603997 ACAGGTAACCAAATGTAGTGTTTTCA 59.396 34.615 0.00 0.00 37.17 2.69
105 106 7.286775 ACAGGTAACCAAATGTAGTGTTTTCAT 59.713 33.333 0.00 0.00 37.17 2.57
106 107 8.788806 CAGGTAACCAAATGTAGTGTTTTCATA 58.211 33.333 0.00 0.00 37.17 2.15
107 108 9.010029 AGGTAACCAAATGTAGTGTTTTCATAG 57.990 33.333 0.00 0.00 37.17 2.23
108 109 9.005777 GGTAACCAAATGTAGTGTTTTCATAGA 57.994 33.333 0.00 0.00 0.00 1.98
121 122 8.635328 AGTGTTTTCATAGAAAAATAAACCCGT 58.365 29.630 6.50 0.00 31.29 5.28
122 123 9.896263 GTGTTTTCATAGAAAAATAAACCCGTA 57.104 29.630 6.50 0.00 31.29 4.02
126 127 9.504708 TTTCATAGAAAAATAAACCCGTAGTGA 57.495 29.630 0.00 0.00 0.00 3.41
127 128 9.675464 TTCATAGAAAAATAAACCCGTAGTGAT 57.325 29.630 0.00 0.00 0.00 3.06
128 129 9.675464 TCATAGAAAAATAAACCCGTAGTGATT 57.325 29.630 0.00 0.00 0.00 2.57
131 132 7.524065 AGAAAAATAAACCCGTAGTGATTTCG 58.476 34.615 0.00 0.00 29.07 3.46
132 133 4.870221 AATAAACCCGTAGTGATTTCGC 57.130 40.909 0.00 0.00 0.00 4.70
133 134 2.172851 AAACCCGTAGTGATTTCGCA 57.827 45.000 0.00 0.00 0.00 5.10
134 135 2.172851 AACCCGTAGTGATTTCGCAA 57.827 45.000 0.00 0.00 0.00 4.85
135 136 2.396590 ACCCGTAGTGATTTCGCAAT 57.603 45.000 0.00 0.00 0.00 3.56
136 137 2.706890 ACCCGTAGTGATTTCGCAATT 58.293 42.857 0.00 0.00 0.00 2.32
137 138 3.078837 ACCCGTAGTGATTTCGCAATTT 58.921 40.909 0.00 0.00 0.00 1.82
138 139 3.119990 ACCCGTAGTGATTTCGCAATTTG 60.120 43.478 0.00 0.00 0.00 2.32
139 140 3.126171 CCCGTAGTGATTTCGCAATTTGA 59.874 43.478 0.00 0.00 0.00 2.69
140 141 4.334443 CCGTAGTGATTTCGCAATTTGAG 58.666 43.478 0.00 0.00 0.00 3.02
141 142 3.780801 CGTAGTGATTTCGCAATTTGAGC 59.219 43.478 0.00 0.00 0.00 4.26
142 143 3.921119 AGTGATTTCGCAATTTGAGCA 57.079 38.095 0.00 0.00 0.00 4.26
143 144 4.445452 AGTGATTTCGCAATTTGAGCAT 57.555 36.364 0.00 0.00 0.00 3.79
144 145 4.418392 AGTGATTTCGCAATTTGAGCATC 58.582 39.130 0.00 3.40 0.00 3.91
145 146 3.549070 GTGATTTCGCAATTTGAGCATCC 59.451 43.478 0.00 0.00 0.00 3.51
146 147 3.444742 TGATTTCGCAATTTGAGCATCCT 59.555 39.130 0.00 0.00 0.00 3.24
162 163 3.118629 GCATCCTTGTGGACACAGAGATA 60.119 47.826 14.80 0.00 46.51 1.98
163 164 4.444022 GCATCCTTGTGGACACAGAGATAT 60.444 45.833 14.80 7.33 46.51 1.63
182 183 0.819259 TGGCCACAGACAAACTCAGC 60.819 55.000 0.00 0.00 0.00 4.26
197 198 2.985847 AGCCTCCAAAGCCGTTGC 60.986 61.111 0.00 0.00 35.74 4.17
246 1774 1.519408 GCACGACTTAAAAGGCCAGA 58.481 50.000 5.01 0.00 0.00 3.86
386 1914 4.643387 GGAGGCCGTTGTGCACCT 62.643 66.667 15.69 1.99 34.43 4.00
413 1941 3.876589 TTCACCTCGAAGCCACCGC 62.877 63.158 0.00 0.00 0.00 5.68
510 2043 2.985456 CTGCCTGGTGAGGACTCC 59.015 66.667 0.00 0.00 42.93 3.85
551 2084 1.593296 CTTTGCTTCTGGCCCTGCTC 61.593 60.000 0.00 0.00 40.92 4.26
570 2103 3.500014 CTCGTTTACTCCTTCGGTTCTC 58.500 50.000 0.00 0.00 0.00 2.87
572 2105 2.603953 GTTTACTCCTTCGGTTCTCGG 58.396 52.381 0.00 0.00 39.77 4.63
595 2128 6.032094 GGTTTCGTAGATGAGTTGTTCGATA 58.968 40.000 0.00 0.00 35.04 2.92
633 2166 0.806868 AATTGCTCCATGTCTGTGCG 59.193 50.000 0.00 0.00 0.00 5.34
748 2281 8.650714 GCCTTTTAATTCTTAAACTTCATGCTG 58.349 33.333 0.00 0.00 35.03 4.41
782 2315 7.888546 AGTATAGAGTGGCAAGTTATTTGGTTT 59.111 33.333 0.00 0.00 37.26 3.27
858 2393 0.748005 CCAGGGTCGGCCTTATTGTG 60.748 60.000 5.77 0.00 34.45 3.33
872 2407 7.976734 CGGCCTTATTGTGGTTTTATAATTTGA 59.023 33.333 0.00 0.00 0.00 2.69
873 2408 9.093970 GGCCTTATTGTGGTTTTATAATTTGAC 57.906 33.333 0.00 0.00 0.00 3.18
897 2432 5.464057 CGGTGACATGTTTGAGTAGTTTGTA 59.536 40.000 0.00 0.00 0.00 2.41
1019 2554 0.966179 ATGGGTTCCAAAGAAACGCC 59.034 50.000 0.00 0.00 40.92 5.68
1020 2555 0.395862 TGGGTTCCAAAGAAACGCCA 60.396 50.000 0.00 0.00 40.92 5.69
1027 2562 1.662876 CCAAAGAAACGCCATGTCGTG 60.663 52.381 1.07 0.00 42.46 4.35
1029 2564 0.884704 AAGAAACGCCATGTCGTGCT 60.885 50.000 1.07 0.34 42.46 4.40
1037 2572 1.823828 CCATGTCGTGCTCGTACTAC 58.176 55.000 8.17 0.00 38.33 2.73
1101 2636 4.880120 TCAGCATCAGAATTTGAGATCACC 59.120 41.667 0.00 0.00 39.68 4.02
1132 2667 0.883833 CCTTGGTGTTGATGCCTCAC 59.116 55.000 0.00 0.00 0.00 3.51
1136 2671 2.741985 TGTTGATGCCTCACCGCG 60.742 61.111 0.00 0.00 0.00 6.46
1141 2676 4.722700 ATGCCTCACCGCGCCTTT 62.723 61.111 0.00 0.00 0.00 3.11
1162 2697 3.552875 TCTCGAAAGATCCCTGATACGT 58.447 45.455 0.00 0.00 40.84 3.57
1209 2744 8.229137 GTGAGAAAAGAGATTCAGATCTTGTTG 58.771 37.037 0.00 0.00 42.66 3.33
1219 2754 6.808008 TTCAGATCTTGTTGGTTCATCTTC 57.192 37.500 0.00 0.00 0.00 2.87
1278 2813 7.443272 CACTGCATTCACAGAATAATCCATCTA 59.557 37.037 0.00 0.00 40.25 1.98
1294 2829 8.792830 AATCCATCTATACCAATTATGTTCCG 57.207 34.615 0.00 0.00 0.00 4.30
1463 2998 4.248174 TGGCAACATTCCTATCCAATCA 57.752 40.909 0.00 0.00 46.17 2.57
1562 3097 9.794719 AGAAGAGGTACCCTTAAATATTATTGC 57.205 33.333 8.74 0.00 31.76 3.56
1708 3243 8.133024 TGAATAAACCAATAGGCATTCACTTT 57.867 30.769 0.00 0.00 36.64 2.66
1801 3336 5.948162 CCCCCATACTCCATCAAATATTGAG 59.052 44.000 0.00 0.00 43.98 3.02
1832 3367 3.808466 TCATTGGAGATGACTCTTCCG 57.192 47.619 0.00 0.00 42.28 4.30
2345 3901 5.447010 GCATCTTCTCTCTCAAATTTGGACG 60.447 44.000 17.90 7.40 0.00 4.79
2381 3937 9.704098 GTAAATTTGACTATTAGCAACACTAGC 57.296 33.333 0.00 0.00 30.79 3.42
2482 4039 4.396357 TTGGAGGGCTTAGATGGAAAAA 57.604 40.909 0.00 0.00 0.00 1.94
2506 4063 1.080638 ATAGTGTTTTGCCCCCTCCA 58.919 50.000 0.00 0.00 0.00 3.86
2526 4083 6.153340 CCTCCAATCTTCAGATTTGCCTTTTA 59.847 38.462 0.00 0.00 42.41 1.52
2529 4086 5.921962 ATCTTCAGATTTGCCTTTTACCC 57.078 39.130 0.00 0.00 0.00 3.69
2561 4119 3.430513 CCCCCGAAGTACTTTTCTAGCTC 60.431 52.174 10.02 0.00 0.00 4.09
2562 4120 3.430513 CCCCGAAGTACTTTTCTAGCTCC 60.431 52.174 10.02 0.00 0.00 4.70
2575 4133 2.965831 TCTAGCTCCGCCACTGATTAAT 59.034 45.455 0.00 0.00 0.00 1.40
2900 5098 9.314321 GTATATGAATATACCAGTGGTGCATAC 57.686 37.037 25.64 13.26 39.29 2.39
2907 5105 4.475051 ACCAGTGGTGCATACGTTTATA 57.525 40.909 15.86 0.00 32.98 0.98
3029 5229 3.094484 TCCCTGGTTTGTTGAAACTGT 57.906 42.857 0.00 0.00 41.21 3.55
3069 5588 5.064579 TCGAATTCGTGATGTTTGCACATAT 59.935 36.000 25.93 0.00 41.10 1.78
3118 5824 8.743085 ATTGACTAGATCACATGCAACTATTT 57.257 30.769 0.00 0.00 36.92 1.40
3174 5880 1.274703 ACGCATTCAGGTGGAGGGAT 61.275 55.000 0.00 0.00 0.00 3.85
3821 6543 8.188799 TGTACGTTTCTCTGAATAGTGAATAGG 58.811 37.037 0.00 0.00 36.59 2.57
4030 6752 4.399303 CCTGAACCATTCCCAGTCAAATAC 59.601 45.833 0.00 0.00 0.00 1.89
4102 6824 4.508461 TTCAACTGCATTCATTCCACAG 57.492 40.909 0.00 0.00 0.00 3.66
4141 6945 3.694072 GGTAATCTGCACACTTAATGCCA 59.306 43.478 0.00 0.00 42.69 4.92
4269 7416 6.046762 TCCATCTGATAATGGGGAGACTACTA 59.953 42.308 3.23 0.00 45.34 1.82
4300 7447 9.875691 GTGTATTATGGTAGATAGCAATGATCA 57.124 33.333 0.00 0.00 37.24 2.92
4307 7454 5.177696 GGTAGATAGCAATGATCACGTTTCC 59.822 44.000 0.00 0.00 0.00 3.13
4404 7551 7.303634 TGTTCTCGTATTTTAAGAGCATTCC 57.696 36.000 0.00 0.00 34.82 3.01
4416 7563 0.389391 AGCATTCCGTACCCGAGATG 59.611 55.000 0.00 0.00 35.63 2.90
4438 7586 1.168407 CCGATATGCCCCAACAGCTG 61.168 60.000 13.48 13.48 0.00 4.24
4790 7984 3.163630 TCTGTTTGCCTTTCTTGTTGC 57.836 42.857 0.00 0.00 0.00 4.17
4974 8168 1.212751 GTCATTGCTTTGCGGACCC 59.787 57.895 0.00 0.00 0.00 4.46
5046 8240 7.447374 TGTTTTCATGGTACTACCTTTCATG 57.553 36.000 6.79 2.48 39.58 3.07
5118 8312 1.788308 GCTTGTTGACGTACGCTTACA 59.212 47.619 16.72 13.50 0.00 2.41
5128 8707 0.108992 TACGCTTACAGTTCTGCCGG 60.109 55.000 0.00 0.00 0.00 6.13
5279 9000 1.212616 GCTAGCCACACTAAGCATCG 58.787 55.000 2.29 0.00 0.00 3.84
5555 9276 6.401153 GCATTCTACTAGAAACAACGAAGTGG 60.401 42.308 2.56 0.00 37.55 4.00
5566 9287 5.225899 ACAACGAAGTGGTGTTTACTTTC 57.774 39.130 0.00 0.00 46.92 2.62
5584 9305 4.039973 ACTTTCGAGTTACCTGACCATTCA 59.960 41.667 0.00 0.00 0.00 2.57
5591 9312 5.552178 AGTTACCTGACCATTCACTTCTTC 58.448 41.667 0.00 0.00 0.00 2.87
5801 9522 0.184451 ACTCCTGGCAGCAATATGGG 59.816 55.000 9.56 0.00 0.00 4.00
5887 9608 5.011023 TCACAATCAGTTCAAGCTACTCTGA 59.989 40.000 11.30 11.30 39.05 3.27
5934 9655 1.362768 GCATGATGACGAGAACAGCA 58.637 50.000 0.00 0.00 38.01 4.41
5977 9698 7.175104 AGTAAAATCTTTTGGCATCCTAGACA 58.825 34.615 0.00 0.00 0.00 3.41
6132 9853 2.158959 CGCGACCGTTCTCACATCC 61.159 63.158 0.00 0.00 0.00 3.51
6171 9892 4.652822 AGAACTCTTTCGCTAACCCAAAT 58.347 39.130 0.00 0.00 36.78 2.32
6228 9949 1.350193 ATGCGTCGCAAAGTGTAGAG 58.650 50.000 25.66 0.00 43.62 2.43
6273 9994 3.824443 TGATATGATTGAAGGCATGGCAG 59.176 43.478 22.64 0.00 0.00 4.85
6278 9999 2.144833 TTGAAGGCATGGCAGTTGCG 62.145 55.000 22.64 0.00 43.26 4.85
6281 10002 4.487412 GGCATGGCAGTTGCGAGC 62.487 66.667 15.47 2.22 43.26 5.03
6290 10011 2.180204 AGTTGCGAGCGCTGTTGTT 61.180 52.632 18.48 0.00 42.51 2.83
6291 10012 1.722507 GTTGCGAGCGCTGTTGTTC 60.723 57.895 18.48 0.00 42.51 3.18
7772 14825 4.272018 GCTTTGCGTCTGACTATGATGAAT 59.728 41.667 6.21 0.00 0.00 2.57
8044 15097 1.074775 GGTGGTGTGGCATGAAGGA 59.925 57.895 0.00 0.00 0.00 3.36
8076 15129 6.373216 TGGAGTAAATAAAAATCACGTCAGGG 59.627 38.462 0.00 0.00 0.00 4.45
8077 15130 6.183360 GGAGTAAATAAAAATCACGTCAGGGG 60.183 42.308 0.00 0.00 0.00 4.79
8078 15131 6.243148 AGTAAATAAAAATCACGTCAGGGGT 58.757 36.000 0.00 0.00 0.00 4.95
8079 15132 5.638596 AAATAAAAATCACGTCAGGGGTC 57.361 39.130 0.00 0.00 0.00 4.46
8080 15133 2.649531 AAAAATCACGTCAGGGGTCA 57.350 45.000 0.00 0.00 0.00 4.02
8081 15134 2.185004 AAAATCACGTCAGGGGTCAG 57.815 50.000 0.00 0.00 0.00 3.51
8082 15135 0.324943 AAATCACGTCAGGGGTCAGG 59.675 55.000 0.00 0.00 0.00 3.86
8083 15136 2.185310 AATCACGTCAGGGGTCAGGC 62.185 60.000 0.00 0.00 0.00 4.85
8084 15137 3.314331 CACGTCAGGGGTCAGGCT 61.314 66.667 0.00 0.00 0.00 4.58
8085 15138 2.526873 ACGTCAGGGGTCAGGCTT 60.527 61.111 0.00 0.00 0.00 4.35
8086 15139 2.046892 CGTCAGGGGTCAGGCTTG 60.047 66.667 0.00 0.00 0.00 4.01
8087 15140 2.883828 CGTCAGGGGTCAGGCTTGT 61.884 63.158 0.00 0.00 0.00 3.16
8088 15141 1.456287 GTCAGGGGTCAGGCTTGTT 59.544 57.895 0.00 0.00 0.00 2.83
8091 15144 0.961753 CAGGGGTCAGGCTTGTTTTC 59.038 55.000 0.00 0.00 0.00 2.29
8096 15149 3.639561 GGGGTCAGGCTTGTTTTCTTTTA 59.360 43.478 0.00 0.00 0.00 1.52
8103 15156 9.744468 GTCAGGCTTGTTTTCTTTTATTTTCTA 57.256 29.630 0.00 0.00 0.00 2.10
8131 15185 7.524294 TGAAAGTGCATTTTCAGTTTTTCTC 57.476 32.000 27.60 4.92 40.95 2.87
8192 15246 4.514577 CTTCAGCCGGCGGATCGT 62.515 66.667 33.44 3.44 0.00 3.73
8194 15248 3.420214 TTCAGCCGGCGGATCGTAC 62.420 63.158 33.44 10.96 0.00 3.67
8234 15288 1.487452 CCGTGTGACGTGTGTCCTTG 61.487 60.000 0.00 0.00 44.86 3.61
8282 15337 2.356665 TTTGCAACTGAGCCCTTGTA 57.643 45.000 0.00 0.00 0.00 2.41
8284 15339 0.764890 TGCAACTGAGCCCTTGTAGT 59.235 50.000 0.00 0.00 0.00 2.73
8286 15341 1.270839 GCAACTGAGCCCTTGTAGTGA 60.271 52.381 0.00 0.00 0.00 3.41
8349 15491 6.110411 TCTAGATCCTTCGTTGAAAAAGGT 57.890 37.500 7.30 0.00 42.28 3.50
8352 15494 5.130350 AGATCCTTCGTTGAAAAAGGTGAA 58.870 37.500 7.30 0.00 42.28 3.18
8353 15495 5.592688 AGATCCTTCGTTGAAAAAGGTGAAA 59.407 36.000 7.30 0.00 42.28 2.69
8357 15499 5.288472 CCTTCGTTGAAAAAGGTGAAAACAG 59.712 40.000 0.66 0.00 37.78 3.16
8371 15513 5.289434 GGTGAAAACAGAAAAAGAACTGCAG 59.711 40.000 13.48 13.48 37.61 4.41
8385 15527 3.806625 ACTGCAGCACTTGAATGTTTT 57.193 38.095 15.27 0.00 0.00 2.43
8386 15528 4.127566 ACTGCAGCACTTGAATGTTTTT 57.872 36.364 15.27 0.00 0.00 1.94
8387 15529 3.866910 ACTGCAGCACTTGAATGTTTTTG 59.133 39.130 15.27 0.00 0.00 2.44
8388 15530 2.608546 TGCAGCACTTGAATGTTTTTGC 59.391 40.909 0.00 0.00 0.00 3.68
8389 15531 2.347846 GCAGCACTTGAATGTTTTTGCG 60.348 45.455 0.00 0.00 35.10 4.85
8390 15532 3.114809 CAGCACTTGAATGTTTTTGCGA 58.885 40.909 0.00 0.00 35.10 5.10
8391 15533 3.061006 CAGCACTTGAATGTTTTTGCGAC 60.061 43.478 0.00 0.00 35.10 5.19
8392 15534 2.857152 GCACTTGAATGTTTTTGCGACA 59.143 40.909 0.00 0.00 0.00 4.35
8393 15535 3.490526 GCACTTGAATGTTTTTGCGACAT 59.509 39.130 0.00 0.00 39.31 3.06
8394 15536 4.606673 GCACTTGAATGTTTTTGCGACATG 60.607 41.667 0.00 0.00 37.76 3.21
8395 15537 4.739228 CACTTGAATGTTTTTGCGACATGA 59.261 37.500 0.00 0.00 37.76 3.07
8396 15538 5.231779 CACTTGAATGTTTTTGCGACATGAA 59.768 36.000 0.00 0.00 37.76 2.57
8397 15539 5.231991 ACTTGAATGTTTTTGCGACATGAAC 59.768 36.000 0.00 0.00 37.76 3.18
8398 15540 4.930963 TGAATGTTTTTGCGACATGAACT 58.069 34.783 0.00 0.00 37.76 3.01
8399 15541 4.975502 TGAATGTTTTTGCGACATGAACTC 59.024 37.500 0.00 0.00 37.76 3.01
8400 15542 4.836125 ATGTTTTTGCGACATGAACTCT 57.164 36.364 0.00 0.00 36.43 3.24
8401 15543 4.209452 TGTTTTTGCGACATGAACTCTC 57.791 40.909 0.00 0.00 0.00 3.20
8402 15544 3.876914 TGTTTTTGCGACATGAACTCTCT 59.123 39.130 0.00 0.00 0.00 3.10
8403 15545 4.335315 TGTTTTTGCGACATGAACTCTCTT 59.665 37.500 0.00 0.00 0.00 2.85
8404 15546 4.472691 TTTTGCGACATGAACTCTCTTG 57.527 40.909 0.00 0.00 33.85 3.02
8405 15547 1.432514 TGCGACATGAACTCTCTTGC 58.567 50.000 0.00 0.00 31.41 4.01
8406 15548 1.270252 TGCGACATGAACTCTCTTGCA 60.270 47.619 0.00 0.00 31.41 4.08
8407 15549 1.800586 GCGACATGAACTCTCTTGCAA 59.199 47.619 0.00 0.00 31.41 4.08
8408 15550 2.159734 GCGACATGAACTCTCTTGCAAG 60.160 50.000 20.81 20.81 31.41 4.01
8409 15551 2.414481 CGACATGAACTCTCTTGCAAGG 59.586 50.000 25.73 16.25 31.41 3.61
8410 15552 3.668447 GACATGAACTCTCTTGCAAGGA 58.332 45.455 25.73 19.29 31.41 3.36
8411 15553 3.672808 ACATGAACTCTCTTGCAAGGAG 58.327 45.455 28.71 28.71 31.41 3.69
8412 15554 2.847327 TGAACTCTCTTGCAAGGAGG 57.153 50.000 31.21 21.88 31.64 4.30
8413 15555 1.349026 TGAACTCTCTTGCAAGGAGGG 59.651 52.381 31.21 25.44 37.33 4.30
8414 15556 1.349357 GAACTCTCTTGCAAGGAGGGT 59.651 52.381 31.21 25.91 45.31 4.34
8415 15557 1.439543 ACTCTCTTGCAAGGAGGGTT 58.560 50.000 31.21 18.11 41.20 4.11
8416 15558 1.349357 ACTCTCTTGCAAGGAGGGTTC 59.651 52.381 31.21 0.00 41.20 3.62
8417 15559 1.627834 CTCTCTTGCAAGGAGGGTTCT 59.372 52.381 25.73 0.00 0.00 3.01
8418 15560 2.834549 CTCTCTTGCAAGGAGGGTTCTA 59.165 50.000 25.73 2.60 0.00 2.10
8419 15561 2.567615 TCTCTTGCAAGGAGGGTTCTAC 59.432 50.000 25.73 0.00 0.00 2.59
8420 15562 2.303022 CTCTTGCAAGGAGGGTTCTACA 59.697 50.000 25.73 1.32 0.00 2.74
8421 15563 2.708861 TCTTGCAAGGAGGGTTCTACAA 59.291 45.455 25.73 0.00 0.00 2.41
8422 15564 2.561478 TGCAAGGAGGGTTCTACAAC 57.439 50.000 0.00 0.00 0.00 3.32
8423 15565 1.771854 TGCAAGGAGGGTTCTACAACA 59.228 47.619 0.00 0.00 33.70 3.33
8424 15566 2.152016 GCAAGGAGGGTTCTACAACAC 58.848 52.381 0.00 0.00 35.97 3.32
8448 15590 7.062605 CACTGATTTTGTTGCAATAATGAGGAC 59.937 37.037 9.58 0.00 0.00 3.85
8459 15602 2.249309 AATGAGGACGGGGTTAGACT 57.751 50.000 0.00 0.00 0.00 3.24
8461 15604 0.113776 TGAGGACGGGGTTAGACTGT 59.886 55.000 0.00 0.00 0.00 3.55
8471 15614 2.105993 GGGTTAGACTGTTGGTTGGACT 59.894 50.000 0.00 0.00 0.00 3.85
8490 15633 4.038162 GGACTAGATCTAACGGCTGTTGAT 59.962 45.833 21.37 19.18 39.12 2.57
8492 15635 3.895232 AGATCTAACGGCTGTTGATGT 57.105 42.857 21.37 15.63 39.12 3.06
8495 15638 1.621317 TCTAACGGCTGTTGATGTGGA 59.379 47.619 21.37 0.00 39.12 4.02
8496 15639 2.236146 TCTAACGGCTGTTGATGTGGAT 59.764 45.455 21.37 0.00 39.12 3.41
8497 15640 1.453155 AACGGCTGTTGATGTGGATC 58.547 50.000 10.90 0.00 36.81 3.36
8515 15661 7.256756 GTGGATCTTTTCAGATTATCCACTG 57.743 40.000 20.30 0.00 45.63 3.66
8519 15665 2.620251 TTCAGATTATCCACTGGCGG 57.380 50.000 0.00 0.00 35.20 6.13
8521 15667 1.412710 TCAGATTATCCACTGGCGGAC 59.587 52.381 0.00 0.00 38.07 4.79
8528 15674 4.111016 CACTGGCGGACGCGTAGA 62.111 66.667 13.97 0.00 43.06 2.59
8548 15694 3.267860 GCTTCAGCCGGCAGATCG 61.268 66.667 31.54 20.22 34.31 3.69
8551 15697 3.390183 TTCAGCCGGCAGATCGCAT 62.390 57.895 31.54 0.76 45.17 4.73
8579 15725 3.499737 GCCGCCTCATTCGTGTGG 61.500 66.667 0.00 0.00 0.00 4.17
8599 15745 4.457496 CGTGTCCTGCGGGCTCAT 62.457 66.667 6.73 0.00 0.00 2.90
8640 15787 6.065374 TGATTTTGTAACTGAGCCCTTGTTA 58.935 36.000 0.00 0.00 0.00 2.41
8641 15788 6.719370 TGATTTTGTAACTGAGCCCTTGTTAT 59.281 34.615 0.00 0.00 0.00 1.89
8642 15789 5.957842 TTTGTAACTGAGCCCTTGTTATG 57.042 39.130 0.00 0.00 0.00 1.90
8643 15790 4.634012 TGTAACTGAGCCCTTGTTATGT 57.366 40.909 0.00 0.00 0.00 2.29
8690 15837 3.576078 TGCAGGATTTGGATCGGTATT 57.424 42.857 0.00 0.00 32.84 1.89
8692 15839 3.118075 TGCAGGATTTGGATCGGTATTCA 60.118 43.478 0.00 0.00 32.84 2.57
8694 15841 4.520492 GCAGGATTTGGATCGGTATTCATT 59.480 41.667 0.00 0.00 32.84 2.57
8724 15871 7.086376 CGTCATTTTGTCAAAATCCTCTCATT 58.914 34.615 18.62 0.00 38.97 2.57
8728 15875 4.771590 TGTCAAAATCCTCTCATTGCAC 57.228 40.909 0.00 0.00 0.00 4.57
8737 15884 2.095567 CCTCTCATTGCACGAAAGTTGG 60.096 50.000 0.00 0.00 46.40 3.77
8773 15920 8.352942 ACAACTTTCATTGACCTTTGTCTTATC 58.647 33.333 0.00 0.00 42.28 1.75
8786 15933 6.656693 CCTTTGTCTTATCTTCAACATGGACT 59.343 38.462 0.00 0.00 0.00 3.85
8788 15935 6.358974 TGTCTTATCTTCAACATGGACTCA 57.641 37.500 0.00 0.00 0.00 3.41
8799 15946 1.942657 CATGGACTCATAAACTGCCCG 59.057 52.381 0.00 0.00 31.33 6.13
8804 15951 1.903860 ACTCATAAACTGCCCGTGGTA 59.096 47.619 0.00 0.00 0.00 3.25
8807 15954 0.741927 ATAAACTGCCCGTGGTACGC 60.742 55.000 0.00 0.00 40.91 4.42
8809 15956 2.741486 AAACTGCCCGTGGTACGCAT 62.741 55.000 0.00 0.00 40.91 4.73
8810 15957 2.435938 CTGCCCGTGGTACGCATT 60.436 61.111 0.00 0.00 40.91 3.56
8811 15958 1.153529 CTGCCCGTGGTACGCATTA 60.154 57.895 0.00 0.00 40.91 1.90
8812 15959 1.151777 CTGCCCGTGGTACGCATTAG 61.152 60.000 0.00 0.00 40.91 1.73
8813 15960 1.885850 GCCCGTGGTACGCATTAGG 60.886 63.158 0.00 0.00 40.91 2.69
8849 16037 0.595825 GAACCGGTTCAGACGTTCGT 60.596 55.000 36.67 4.39 39.31 3.85
8855 16043 2.595881 CGGTTCAGACGTTCGTTTTCAC 60.596 50.000 0.00 0.00 0.00 3.18
8874 16062 2.606725 CACGCAAATTGAAGGCAAACAA 59.393 40.909 0.00 0.00 37.59 2.83
8883 16071 1.488812 GAAGGCAAACAAGGGGGTTTT 59.511 47.619 0.00 0.00 38.86 2.43
8884 16072 0.836606 AGGCAAACAAGGGGGTTTTG 59.163 50.000 0.00 0.00 38.86 2.44
8885 16073 0.817634 GGCAAACAAGGGGGTTTTGC 60.818 55.000 9.29 9.29 38.86 3.68
8886 16074 1.157257 GCAAACAAGGGGGTTTTGCG 61.157 55.000 2.79 0.00 38.86 4.85
8888 16076 1.691195 AAACAAGGGGGTTTTGCGGG 61.691 55.000 0.00 0.00 37.72 6.13
8889 16077 2.523168 CAAGGGGGTTTTGCGGGT 60.523 61.111 0.00 0.00 0.00 5.28
8890 16078 1.228613 CAAGGGGGTTTTGCGGGTA 60.229 57.895 0.00 0.00 0.00 3.69
8893 16081 0.115547 AGGGGGTTTTGCGGGTATTT 59.884 50.000 0.00 0.00 0.00 1.40
8895 16083 0.248012 GGGGTTTTGCGGGTATTTGG 59.752 55.000 0.00 0.00 0.00 3.28
8896 16084 1.258676 GGGTTTTGCGGGTATTTGGA 58.741 50.000 0.00 0.00 0.00 3.53
8898 16086 1.067425 GGTTTTGCGGGTATTTGGACC 60.067 52.381 0.00 0.00 38.93 4.46
8899 16087 1.614413 GTTTTGCGGGTATTTGGACCA 59.386 47.619 0.00 0.00 41.73 4.02
8900 16088 2.223803 TTTGCGGGTATTTGGACCAT 57.776 45.000 0.00 0.00 41.73 3.55
8901 16089 1.757682 TTGCGGGTATTTGGACCATC 58.242 50.000 0.00 0.00 41.73 3.51
8902 16090 0.462937 TGCGGGTATTTGGACCATCG 60.463 55.000 0.00 0.00 41.73 3.84
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.478879 CGTCAATTAAATTGGGTCGCCC 60.479 50.000 7.87 7.87 45.71 6.13
5 6 2.420722 TCGTCAATTAAATTGGGTCGCC 59.579 45.455 0.00 0.00 40.61 5.54
6 7 3.422655 GTCGTCAATTAAATTGGGTCGC 58.577 45.455 0.00 0.00 40.61 5.19
7 8 3.687698 AGGTCGTCAATTAAATTGGGTCG 59.312 43.478 0.00 0.00 40.61 4.79
8 9 4.698304 TGAGGTCGTCAATTAAATTGGGTC 59.302 41.667 0.00 0.00 40.61 4.46
9 10 4.658063 TGAGGTCGTCAATTAAATTGGGT 58.342 39.130 0.00 0.00 40.61 4.51
10 11 5.637006 TTGAGGTCGTCAATTAAATTGGG 57.363 39.130 3.85 0.00 40.45 4.12
21 22 5.104941 AGTCCATAATCAATTGAGGTCGTCA 60.105 40.000 14.54 0.00 0.00 4.35
22 23 5.360591 AGTCCATAATCAATTGAGGTCGTC 58.639 41.667 14.54 2.33 0.00 4.20
23 24 5.129485 AGAGTCCATAATCAATTGAGGTCGT 59.871 40.000 14.54 0.00 0.00 4.34
24 25 5.605534 AGAGTCCATAATCAATTGAGGTCG 58.394 41.667 14.54 2.83 0.00 4.79
25 26 7.872113 AAAGAGTCCATAATCAATTGAGGTC 57.128 36.000 14.54 7.34 0.00 3.85
26 27 9.753674 TTTAAAGAGTCCATAATCAATTGAGGT 57.246 29.630 14.54 6.95 0.00 3.85
36 37 9.868160 CCTCCCTATTTTTAAAGAGTCCATAAT 57.132 33.333 0.00 0.00 0.00 1.28
37 38 8.279361 CCCTCCCTATTTTTAAAGAGTCCATAA 58.721 37.037 0.00 0.00 0.00 1.90
38 39 7.407918 ACCCTCCCTATTTTTAAAGAGTCCATA 59.592 37.037 0.00 0.00 0.00 2.74
39 40 6.219772 ACCCTCCCTATTTTTAAAGAGTCCAT 59.780 38.462 0.00 0.00 0.00 3.41
40 41 5.554350 ACCCTCCCTATTTTTAAAGAGTCCA 59.446 40.000 0.00 0.00 0.00 4.02
41 42 6.075949 ACCCTCCCTATTTTTAAAGAGTCC 57.924 41.667 0.00 0.00 0.00 3.85
71 72 9.528489 ACTACATTTGGTTACCTGTATCAATTT 57.472 29.630 2.07 0.00 0.00 1.82
72 73 8.956426 CACTACATTTGGTTACCTGTATCAATT 58.044 33.333 2.07 0.00 0.00 2.32
73 74 8.107095 ACACTACATTTGGTTACCTGTATCAAT 58.893 33.333 2.07 0.00 0.00 2.57
74 75 7.455058 ACACTACATTTGGTTACCTGTATCAA 58.545 34.615 2.07 0.00 0.00 2.57
75 76 7.011499 ACACTACATTTGGTTACCTGTATCA 57.989 36.000 2.07 0.00 0.00 2.15
76 77 7.916914 AACACTACATTTGGTTACCTGTATC 57.083 36.000 2.07 0.00 0.00 2.24
77 78 8.700439 AAAACACTACATTTGGTTACCTGTAT 57.300 30.769 2.07 0.00 0.00 2.29
78 79 7.774157 TGAAAACACTACATTTGGTTACCTGTA 59.226 33.333 2.07 2.45 0.00 2.74
79 80 6.603997 TGAAAACACTACATTTGGTTACCTGT 59.396 34.615 2.07 1.22 0.00 4.00
80 81 7.033530 TGAAAACACTACATTTGGTTACCTG 57.966 36.000 2.07 0.00 0.00 4.00
81 82 7.833285 ATGAAAACACTACATTTGGTTACCT 57.167 32.000 2.07 0.00 0.00 3.08
82 83 9.005777 TCTATGAAAACACTACATTTGGTTACC 57.994 33.333 0.00 0.00 0.00 2.85
95 96 8.635328 ACGGGTTTATTTTTCTATGAAAACACT 58.365 29.630 5.14 0.00 31.88 3.55
96 97 8.806177 ACGGGTTTATTTTTCTATGAAAACAC 57.194 30.769 5.14 0.00 31.88 3.32
100 101 9.504708 TCACTACGGGTTTATTTTTCTATGAAA 57.495 29.630 0.00 0.00 0.00 2.69
101 102 9.675464 ATCACTACGGGTTTATTTTTCTATGAA 57.325 29.630 0.00 0.00 0.00 2.57
102 103 9.675464 AATCACTACGGGTTTATTTTTCTATGA 57.325 29.630 0.00 0.00 0.00 2.15
105 106 8.658609 CGAAATCACTACGGGTTTATTTTTCTA 58.341 33.333 0.00 0.00 0.00 2.10
106 107 7.524065 CGAAATCACTACGGGTTTATTTTTCT 58.476 34.615 0.00 0.00 0.00 2.52
107 108 6.249893 GCGAAATCACTACGGGTTTATTTTTC 59.750 38.462 0.00 0.00 0.00 2.29
108 109 6.088173 GCGAAATCACTACGGGTTTATTTTT 58.912 36.000 0.00 0.00 0.00 1.94
109 110 5.181622 TGCGAAATCACTACGGGTTTATTTT 59.818 36.000 0.00 0.00 0.00 1.82
110 111 4.696402 TGCGAAATCACTACGGGTTTATTT 59.304 37.500 0.00 0.00 0.00 1.40
111 112 4.255301 TGCGAAATCACTACGGGTTTATT 58.745 39.130 0.00 0.00 0.00 1.40
112 113 3.864243 TGCGAAATCACTACGGGTTTAT 58.136 40.909 0.00 0.00 0.00 1.40
113 114 3.316071 TGCGAAATCACTACGGGTTTA 57.684 42.857 0.00 0.00 0.00 2.01
114 115 2.172851 TGCGAAATCACTACGGGTTT 57.827 45.000 0.00 0.00 0.00 3.27
115 116 2.172851 TTGCGAAATCACTACGGGTT 57.827 45.000 0.00 0.00 0.00 4.11
116 117 2.396590 ATTGCGAAATCACTACGGGT 57.603 45.000 0.00 0.00 0.00 5.28
117 118 3.126171 TCAAATTGCGAAATCACTACGGG 59.874 43.478 0.00 0.00 0.00 5.28
118 119 4.334443 CTCAAATTGCGAAATCACTACGG 58.666 43.478 0.00 0.00 0.00 4.02
119 120 3.780801 GCTCAAATTGCGAAATCACTACG 59.219 43.478 0.00 0.00 0.00 3.51
120 121 4.722194 TGCTCAAATTGCGAAATCACTAC 58.278 39.130 0.00 0.00 0.00 2.73
121 122 5.449041 GGATGCTCAAATTGCGAAATCACTA 60.449 40.000 0.00 0.00 0.00 2.74
122 123 3.921119 TGCTCAAATTGCGAAATCACT 57.079 38.095 0.00 0.00 0.00 3.41
123 124 3.549070 GGATGCTCAAATTGCGAAATCAC 59.451 43.478 0.00 0.00 0.00 3.06
124 125 3.444742 AGGATGCTCAAATTGCGAAATCA 59.555 39.130 0.00 0.00 0.00 2.57
125 126 4.037858 AGGATGCTCAAATTGCGAAATC 57.962 40.909 0.00 0.00 0.00 2.17
126 127 4.178540 CAAGGATGCTCAAATTGCGAAAT 58.821 39.130 0.00 0.00 0.00 2.17
127 128 3.005684 ACAAGGATGCTCAAATTGCGAAA 59.994 39.130 0.00 0.00 0.00 3.46
128 129 2.557924 ACAAGGATGCTCAAATTGCGAA 59.442 40.909 0.00 0.00 0.00 4.70
129 130 2.095110 CACAAGGATGCTCAAATTGCGA 60.095 45.455 0.00 0.00 0.00 5.10
130 131 2.256174 CACAAGGATGCTCAAATTGCG 58.744 47.619 0.00 0.00 0.00 4.85
131 132 2.231964 TCCACAAGGATGCTCAAATTGC 59.768 45.455 0.00 0.00 39.61 3.56
143 144 3.452264 CCATATCTCTGTGTCCACAAGGA 59.548 47.826 1.30 3.52 41.33 3.36
144 145 3.801698 CCATATCTCTGTGTCCACAAGG 58.198 50.000 1.30 0.00 41.33 3.61
145 146 3.201290 GCCATATCTCTGTGTCCACAAG 58.799 50.000 1.30 3.14 41.33 3.16
146 147 2.092968 GGCCATATCTCTGTGTCCACAA 60.093 50.000 0.00 0.00 41.33 3.33
162 163 1.901591 CTGAGTTTGTCTGTGGCCAT 58.098 50.000 9.72 0.00 0.00 4.40
163 164 0.819259 GCTGAGTTTGTCTGTGGCCA 60.819 55.000 0.00 0.00 0.00 5.36
182 183 2.644992 GTGCAACGGCTTTGGAGG 59.355 61.111 5.83 0.00 35.99 4.30
233 234 1.672881 CCGCATCTCTGGCCTTTTAAG 59.327 52.381 3.32 0.00 0.00 1.85
246 1774 1.447643 GTGGTGCCTATCCGCATCT 59.552 57.895 0.00 0.00 40.70 2.90
396 1924 4.373116 GCGGTGGCTTCGAGGTGA 62.373 66.667 0.00 0.00 35.83 4.02
470 1998 2.333417 GGTCGAGGAGTGAGTGCGA 61.333 63.158 0.00 0.00 0.00 5.10
523 2056 4.503817 GGGCCAGAAGCAAAGAAAAAGATT 60.504 41.667 4.39 0.00 46.50 2.40
570 2103 3.059044 CGAACAACTCATCTACGAAACCG 59.941 47.826 0.00 0.00 0.00 4.44
572 2105 7.502177 TTATCGAACAACTCATCTACGAAAC 57.498 36.000 0.00 0.00 32.48 2.78
595 2128 5.876460 GCAATTCTCTTGTATTGGCCATTTT 59.124 36.000 6.09 0.00 33.41 1.82
633 2166 2.163010 TCCTATCACTGGTCGAACGAAC 59.837 50.000 5.26 5.26 0.00 3.95
748 2281 8.943909 AACTTGCCACTCTATACTATTTGTAC 57.056 34.615 0.00 0.00 33.45 2.90
782 2315 8.995220 GTCCAAAACAACACATATCTACAACTA 58.005 33.333 0.00 0.00 0.00 2.24
858 2393 7.309920 ACATGTCACCGTCAAATTATAAAACC 58.690 34.615 0.00 0.00 0.00 3.27
872 2407 3.746045 ACTACTCAAACATGTCACCGT 57.254 42.857 0.00 0.00 0.00 4.83
873 2408 4.272504 ACAAACTACTCAAACATGTCACCG 59.727 41.667 0.00 0.00 0.00 4.94
908 2443 3.145286 TGCCAATCACGTCTTTTGATGA 58.855 40.909 3.80 0.00 38.75 2.92
1019 2554 2.352034 AGAGTAGTACGAGCACGACATG 59.648 50.000 11.40 0.00 42.66 3.21
1020 2555 2.608546 GAGAGTAGTACGAGCACGACAT 59.391 50.000 11.40 0.00 42.66 3.06
1027 2562 2.940410 AGAAGCAGAGAGTAGTACGAGC 59.060 50.000 0.00 0.00 0.00 5.03
1029 2564 3.127203 GCAAGAAGCAGAGAGTAGTACGA 59.873 47.826 0.00 0.00 44.79 3.43
1080 2615 4.205587 GGGTGATCTCAAATTCTGATGCT 58.794 43.478 0.00 0.00 32.14 3.79
1132 2667 1.084370 ATCTTTCGAGAAAGGCGCGG 61.084 55.000 21.18 0.93 45.80 6.46
1136 2671 2.093447 TCAGGGATCTTTCGAGAAAGGC 60.093 50.000 21.18 14.77 45.80 4.35
1141 2676 3.552875 ACGTATCAGGGATCTTTCGAGA 58.447 45.455 0.00 0.00 0.00 4.04
1193 2728 6.719301 AGATGAACCAACAAGATCTGAATCT 58.281 36.000 0.00 0.00 44.37 2.40
1197 2732 6.119240 AGAAGATGAACCAACAAGATCTGA 57.881 37.500 0.00 0.00 0.00 3.27
1209 2744 2.003301 GCCACGAGAAGAAGATGAACC 58.997 52.381 0.00 0.00 0.00 3.62
1219 2754 0.236711 CTGCAAAGTGCCACGAGAAG 59.763 55.000 0.00 0.00 44.23 2.85
1245 2780 4.558226 TCTGTGAATGCAGTGAACCTAT 57.442 40.909 0.00 0.00 37.70 2.57
1278 2813 5.367945 ACCTGACGGAACATAATTGGTAT 57.632 39.130 0.00 0.00 0.00 2.73
1294 2829 3.134458 CCAGTTGAAGTGAGAACCTGAC 58.866 50.000 0.68 0.00 0.00 3.51
1463 2998 6.966534 AAGTTCAGATGTTCAAATGGACTT 57.033 33.333 7.85 7.85 36.80 3.01
1543 3078 8.793592 CCTTCAGGCAATAATATTTAAGGGTAC 58.206 37.037 0.00 0.00 0.00 3.34
1562 3097 6.318900 GTCAATAGGGAATTGTAACCTTCAGG 59.681 42.308 0.00 0.00 44.58 3.86
1708 3243 5.827797 AGACCTTGAAAATCAACAGCAACTA 59.172 36.000 0.00 0.00 32.21 2.24
1832 3367 2.774687 ACGGTCTGTTCCCACAAATAC 58.225 47.619 0.00 0.00 30.36 1.89
2038 3578 4.019919 CAACATGCATGGTGCTAGTTAC 57.980 45.455 30.48 0.00 45.31 2.50
2132 3672 7.733402 AAGCAAACAAATGAAAATGCAGTAT 57.267 28.000 0.00 0.00 36.30 2.12
2381 3937 0.248907 CTGGCGTACACATACCTCCG 60.249 60.000 0.00 0.00 0.00 4.63
2482 4039 4.341487 GAGGGGGCAAAACACTATTACTT 58.659 43.478 0.00 0.00 0.00 2.24
2484 4041 3.021695 GGAGGGGGCAAAACACTATTAC 58.978 50.000 0.00 0.00 0.00 1.89
2506 4063 5.187772 GGGGTAAAAGGCAAATCTGAAGATT 59.812 40.000 0.00 0.00 45.91 2.40
2561 4119 5.209818 TCCTTACTATTAATCAGTGGCGG 57.790 43.478 0.00 0.00 0.00 6.13
2562 4120 6.202954 CCTTTCCTTACTATTAATCAGTGGCG 59.797 42.308 0.00 0.00 0.00 5.69
2575 4133 5.763204 CAGAAGTGCAAACCTTTCCTTACTA 59.237 40.000 0.00 0.00 0.00 1.82
2900 5098 8.642908 TGGTATGTCAAACTCTCATATAAACG 57.357 34.615 0.00 0.00 0.00 3.60
2907 5105 8.641498 AGAAATTTGGTATGTCAAACTCTCAT 57.359 30.769 0.00 0.00 39.13 2.90
3118 5824 3.888930 CCTTCAACAAAGCAACCTCCTAA 59.111 43.478 0.00 0.00 33.29 2.69
3174 5880 5.398236 CTCTCTTCCCATGGACCTATAGAA 58.602 45.833 15.22 5.22 0.00 2.10
3413 6129 9.482627 GGGAAACAGTAGTGATCAAAGATATAG 57.517 37.037 4.09 0.00 0.00 1.31
3696 6418 5.052481 TCTCTGTTCCAATATTGATCAGCG 58.948 41.667 17.23 14.66 0.00 5.18
3821 6543 5.668471 TGGAATCTCTTGATGAGTGTGATC 58.332 41.667 0.00 0.00 43.13 2.92
4030 6752 3.469899 TCTTCATTTCCGATTGCAACG 57.530 42.857 0.00 7.88 0.00 4.10
4269 7416 8.435931 TTGCTATCTACCATAATACACTGGAT 57.564 34.615 0.00 0.00 36.35 3.41
4300 7447 0.179001 CCTTGGGACCTTGGAAACGT 60.179 55.000 0.00 0.00 0.00 3.99
4307 7454 4.662278 TGAATCTAAACCTTGGGACCTTG 58.338 43.478 0.00 0.00 0.00 3.61
4404 7551 0.666913 ATCGGTTCATCTCGGGTACG 59.333 55.000 0.00 0.00 42.74 3.67
4416 7563 1.308998 CTGTTGGGGCATATCGGTTC 58.691 55.000 0.00 0.00 0.00 3.62
4438 7586 8.178313 GGCAGATAACTACTTTCATGTTTTCTC 58.822 37.037 0.00 0.00 32.56 2.87
4611 7805 8.950208 AGTTACCTGTTCAATAGAATTAGAGC 57.050 34.615 0.00 0.00 35.92 4.09
4839 8033 3.388676 AGAAGCATCCTCAAGATCTCAGG 59.611 47.826 12.72 12.72 30.59 3.86
4974 8168 5.575606 CAGGCATCTTTCTGCAACATAAAAG 59.424 40.000 0.00 0.00 44.12 2.27
5046 8240 8.524870 AAAATATGAGCAAGTTGTGAATTCAC 57.475 30.769 28.10 28.10 46.59 3.18
5118 8312 0.613853 TAGGTGTAGCCGGCAGAACT 60.614 55.000 31.54 22.12 43.70 3.01
5128 8707 9.965824 AAATTGCATAACATATTTAGGTGTAGC 57.034 29.630 0.00 0.00 0.00 3.58
5182 8848 6.431543 TCGATATCCTTCTTACTCATCCTCAC 59.568 42.308 0.00 0.00 0.00 3.51
5279 9000 5.537188 TGCACCCAAAATTAGATTCACAAC 58.463 37.500 0.00 0.00 0.00 3.32
5473 9194 9.959749 GAAACATAGTGTCAAACTTTTATCCAA 57.040 29.630 0.00 0.00 40.56 3.53
5584 9305 7.865706 ACAACATCACTGTAAAAGAAGAAGT 57.134 32.000 0.00 0.00 33.36 3.01
5591 9312 7.485913 GCCATATGAACAACATCACTGTAAAAG 59.514 37.037 3.65 0.00 40.07 2.27
5887 9608 2.898840 CGGATGCTGCCAGCGAAT 60.899 61.111 12.80 0.00 46.26 3.34
5934 9655 6.374417 TTTACTTGCCTTAACTCTCAGGAT 57.626 37.500 0.00 0.00 30.81 3.24
5977 9698 0.111832 TCCGTCCAGATACCGGCTAT 59.888 55.000 0.00 0.00 41.46 2.97
6117 9838 4.496670 CCGGATGTGAGAACGGTC 57.503 61.111 0.00 0.00 41.34 4.79
6132 9853 0.172578 TCTCGTCCATTACACTGCCG 59.827 55.000 0.00 0.00 0.00 5.69
6273 9994 1.722507 GAACAACAGCGCTCGCAAC 60.723 57.895 7.13 0.00 44.88 4.17
6278 9999 0.027586 ACAAACGAACAACAGCGCTC 59.972 50.000 7.13 0.00 0.00 5.03
6281 10002 2.101125 CAGAACAAACGAACAACAGCG 58.899 47.619 0.00 0.00 0.00 5.18
6290 10011 1.138069 TGAGCTGACCAGAACAAACGA 59.862 47.619 0.00 0.00 0.00 3.85
6291 10012 1.581934 TGAGCTGACCAGAACAAACG 58.418 50.000 0.00 0.00 0.00 3.60
6332 10057 4.777854 TCTAGCTCCGCCCCTGCA 62.778 66.667 0.00 0.00 37.32 4.41
7299 14285 9.990868 ATCCCCTAGTTTCTTAATTGTGTATTT 57.009 29.630 0.00 0.00 0.00 1.40
7749 14802 3.190079 TCATCATAGTCAGACGCAAAGC 58.810 45.455 0.00 0.00 0.00 3.51
7750 14803 5.521372 TCATTCATCATAGTCAGACGCAAAG 59.479 40.000 0.00 0.00 0.00 2.77
7751 14804 5.418676 TCATTCATCATAGTCAGACGCAAA 58.581 37.500 0.00 0.00 0.00 3.68
7752 14805 5.009854 TCATTCATCATAGTCAGACGCAA 57.990 39.130 0.00 0.00 0.00 4.85
7758 14811 5.306394 ACCTGCATCATTCATCATAGTCAG 58.694 41.667 0.00 0.00 0.00 3.51
7813 14866 1.758514 TGACCTCCATCTCCTCCGC 60.759 63.158 0.00 0.00 0.00 5.54
8076 15129 7.710907 AGAAAATAAAAGAAAACAAGCCTGACC 59.289 33.333 0.00 0.00 0.00 4.02
8077 15130 8.648557 AGAAAATAAAAGAAAACAAGCCTGAC 57.351 30.769 0.00 0.00 0.00 3.51
8096 15149 9.985730 TGAAAATGCACTTTCAGAATAGAAAAT 57.014 25.926 18.68 0.00 39.74 1.82
8113 15166 3.380142 GCCGAGAAAAACTGAAAATGCA 58.620 40.909 0.00 0.00 0.00 3.96
8131 15185 0.387239 CTTTCCTTTTGCCTTCGCCG 60.387 55.000 0.00 0.00 0.00 6.46
8228 15282 1.908483 CTAGGTGAGCCCCAAGGAC 59.092 63.158 0.00 0.00 33.47 3.85
8229 15283 1.995626 GCTAGGTGAGCCCCAAGGA 60.996 63.158 0.00 0.00 46.41 3.36
8260 15315 0.752658 AAGGGCTCAGTTGCAAAACC 59.247 50.000 0.00 0.00 34.04 3.27
8292 15347 5.242069 CAACATACAAGTTGTTGTGGTGA 57.758 39.130 24.03 4.46 46.75 4.02
8306 15361 3.264193 AGATCCTGTTCCTGCAACATACA 59.736 43.478 0.00 0.00 44.32 2.29
8349 15491 4.864247 GCTGCAGTTCTTTTTCTGTTTTCA 59.136 37.500 16.64 0.00 34.57 2.69
8352 15494 4.082026 AGTGCTGCAGTTCTTTTTCTGTTT 60.082 37.500 16.64 0.00 34.57 2.83
8353 15495 3.445096 AGTGCTGCAGTTCTTTTTCTGTT 59.555 39.130 16.64 0.00 34.57 3.16
8357 15499 4.032703 TCAAGTGCTGCAGTTCTTTTTC 57.967 40.909 19.27 0.00 0.00 2.29
8371 15513 2.857152 TGTCGCAAAAACATTCAAGTGC 59.143 40.909 0.00 0.00 0.00 4.40
8385 15527 1.800586 GCAAGAGAGTTCATGTCGCAA 59.199 47.619 0.00 0.00 0.00 4.85
8386 15528 1.270252 TGCAAGAGAGTTCATGTCGCA 60.270 47.619 0.00 0.00 0.00 5.10
8387 15529 1.432514 TGCAAGAGAGTTCATGTCGC 58.567 50.000 0.00 0.00 0.00 5.19
8388 15530 2.414481 CCTTGCAAGAGAGTTCATGTCG 59.586 50.000 28.05 2.04 0.00 4.35
8389 15531 3.668447 TCCTTGCAAGAGAGTTCATGTC 58.332 45.455 28.05 0.00 0.00 3.06
8390 15532 3.558746 CCTCCTTGCAAGAGAGTTCATGT 60.559 47.826 28.05 0.00 32.86 3.21
8391 15533 3.008330 CCTCCTTGCAAGAGAGTTCATG 58.992 50.000 28.05 13.71 32.86 3.07
8392 15534 2.026449 CCCTCCTTGCAAGAGAGTTCAT 60.026 50.000 28.05 0.00 32.86 2.57
8393 15535 1.349026 CCCTCCTTGCAAGAGAGTTCA 59.651 52.381 28.05 1.18 32.86 3.18
8394 15536 1.349357 ACCCTCCTTGCAAGAGAGTTC 59.651 52.381 28.05 0.00 32.86 3.01
8395 15537 1.439543 ACCCTCCTTGCAAGAGAGTT 58.560 50.000 28.05 16.18 32.86 3.01
8396 15538 1.349357 GAACCCTCCTTGCAAGAGAGT 59.651 52.381 28.05 15.91 32.86 3.24
8397 15539 1.627834 AGAACCCTCCTTGCAAGAGAG 59.372 52.381 28.05 26.71 32.86 3.20
8398 15540 1.734655 AGAACCCTCCTTGCAAGAGA 58.265 50.000 28.05 20.13 32.86 3.10
8399 15541 2.303022 TGTAGAACCCTCCTTGCAAGAG 59.697 50.000 28.05 20.37 0.00 2.85
8400 15542 2.334977 TGTAGAACCCTCCTTGCAAGA 58.665 47.619 28.05 12.59 0.00 3.02
8401 15543 2.814336 GTTGTAGAACCCTCCTTGCAAG 59.186 50.000 19.93 19.93 0.00 4.01
8402 15544 2.173782 TGTTGTAGAACCCTCCTTGCAA 59.826 45.455 0.00 0.00 0.00 4.08
8403 15545 1.771854 TGTTGTAGAACCCTCCTTGCA 59.228 47.619 0.00 0.00 0.00 4.08
8404 15546 2.152016 GTGTTGTAGAACCCTCCTTGC 58.848 52.381 0.00 0.00 0.00 4.01
8405 15547 3.071023 TCAGTGTTGTAGAACCCTCCTTG 59.929 47.826 0.00 0.00 0.00 3.61
8406 15548 3.314693 TCAGTGTTGTAGAACCCTCCTT 58.685 45.455 0.00 0.00 0.00 3.36
8407 15549 2.972348 TCAGTGTTGTAGAACCCTCCT 58.028 47.619 0.00 0.00 0.00 3.69
8408 15550 3.983044 ATCAGTGTTGTAGAACCCTCC 57.017 47.619 0.00 0.00 0.00 4.30
8409 15551 5.531287 ACAAAATCAGTGTTGTAGAACCCTC 59.469 40.000 0.00 0.00 36.22 4.30
8410 15552 5.445964 ACAAAATCAGTGTTGTAGAACCCT 58.554 37.500 0.00 0.00 36.22 4.34
8411 15553 5.767816 ACAAAATCAGTGTTGTAGAACCC 57.232 39.130 0.00 0.00 36.22 4.11
8420 15562 7.385752 CCTCATTATTGCAACAAAATCAGTGTT 59.614 33.333 0.00 0.00 39.79 3.32
8421 15563 6.869913 CCTCATTATTGCAACAAAATCAGTGT 59.130 34.615 0.00 0.00 0.00 3.55
8422 15564 7.062605 GTCCTCATTATTGCAACAAAATCAGTG 59.937 37.037 0.00 0.00 0.00 3.66
8423 15565 7.092716 GTCCTCATTATTGCAACAAAATCAGT 58.907 34.615 0.00 0.00 0.00 3.41
8424 15566 6.252015 CGTCCTCATTATTGCAACAAAATCAG 59.748 38.462 0.00 0.00 0.00 2.90
8425 15567 6.092092 CGTCCTCATTATTGCAACAAAATCA 58.908 36.000 0.00 0.00 0.00 2.57
8426 15568 5.516339 CCGTCCTCATTATTGCAACAAAATC 59.484 40.000 0.00 0.00 0.00 2.17
8427 15569 5.410067 CCGTCCTCATTATTGCAACAAAAT 58.590 37.500 0.00 0.00 0.00 1.82
8428 15570 4.321601 CCCGTCCTCATTATTGCAACAAAA 60.322 41.667 0.00 0.00 0.00 2.44
8448 15590 1.519408 CAACCAACAGTCTAACCCCG 58.481 55.000 0.00 0.00 0.00 5.73
8459 15602 4.081862 CCGTTAGATCTAGTCCAACCAACA 60.082 45.833 2.02 0.00 0.00 3.33
8461 15604 3.118884 GCCGTTAGATCTAGTCCAACCAA 60.119 47.826 2.02 0.00 0.00 3.67
8471 15614 4.441495 CCACATCAACAGCCGTTAGATCTA 60.441 45.833 0.00 0.00 32.75 1.98
8492 15635 6.359804 CCAGTGGATAATCTGAAAAGATCCA 58.640 40.000 1.68 8.33 42.94 3.41
8495 15638 4.818546 CGCCAGTGGATAATCTGAAAAGAT 59.181 41.667 15.20 0.00 34.02 2.40
8496 15639 4.191544 CGCCAGTGGATAATCTGAAAAGA 58.808 43.478 15.20 0.00 34.02 2.52
8497 15640 3.313526 CCGCCAGTGGATAATCTGAAAAG 59.686 47.826 15.20 0.00 34.02 2.27
8519 15665 1.483424 GCTGAAGCCATCTACGCGTC 61.483 60.000 18.63 0.00 35.60 5.19
8521 15667 3.313750 GCTGAAGCCATCTACGCG 58.686 61.111 3.53 3.53 34.31 6.01
8624 15771 6.969993 AAAAACATAACAAGGGCTCAGTTA 57.030 33.333 4.40 4.40 32.87 2.24
8649 15796 2.564771 ACATATGAGTCATTGCGGTGG 58.435 47.619 11.68 0.00 0.00 4.61
8658 15805 4.641541 CCAAATCCTGCAACATATGAGTCA 59.358 41.667 10.38 0.00 0.00 3.41
8659 15806 4.883585 TCCAAATCCTGCAACATATGAGTC 59.116 41.667 10.38 0.00 0.00 3.36
8690 15837 2.620585 TGACAAAATGACGCACCAATGA 59.379 40.909 0.00 0.00 0.00 2.57
8692 15839 3.724508 TTGACAAAATGACGCACCAAT 57.275 38.095 0.00 0.00 0.00 3.16
8694 15841 3.510388 TTTTGACAAAATGACGCACCA 57.490 38.095 9.30 0.00 0.00 4.17
8724 15871 1.001487 CATTCTGCCAACTTTCGTGCA 60.001 47.619 0.00 0.00 0.00 4.57
8728 15875 0.597568 TGCCATTCTGCCAACTTTCG 59.402 50.000 0.00 0.00 0.00 3.46
8737 15884 2.798976 TGAAAGTTGTGCCATTCTGC 57.201 45.000 0.00 0.00 0.00 4.26
8773 15920 5.392380 GGCAGTTTATGAGTCCATGTTGAAG 60.392 44.000 0.00 0.00 34.31 3.02
8786 15933 1.404449 CGTACCACGGGCAGTTTATGA 60.404 52.381 0.00 0.00 38.08 2.15
8788 15935 0.741927 GCGTACCACGGGCAGTTTAT 60.742 55.000 0.44 0.00 42.82 1.40
8842 16030 2.461897 ATTTGCGTGAAAACGAACGT 57.538 40.000 1.87 0.00 41.76 3.99
8849 16037 3.170791 TGCCTTCAATTTGCGTGAAAA 57.829 38.095 0.00 0.00 34.68 2.29
8855 16043 2.221517 CCTTGTTTGCCTTCAATTTGCG 59.778 45.455 0.00 0.00 31.33 4.85
8874 16062 0.115547 AAATACCCGCAAAACCCCCT 59.884 50.000 0.00 0.00 0.00 4.79
8883 16071 0.462937 CGATGGTCCAAATACCCGCA 60.463 55.000 0.00 0.00 38.90 5.69
8884 16072 2.317230 CGATGGTCCAAATACCCGC 58.683 57.895 0.00 0.00 38.90 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.