Multiple sequence alignment - TraesCS5A01G138100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G138100 chr5A 100.000 7197 0 0 1 7197 310728096 310735292 0.000000e+00 13291.0
1 TraesCS5A01G138100 chr5A 94.195 379 18 3 364 742 705868283 705867909 6.260000e-160 575.0
2 TraesCS5A01G138100 chr5A 95.252 337 12 2 18 351 705868584 705868249 1.370000e-146 531.0
3 TraesCS5A01G138100 chr5D 96.544 4167 115 18 817 4968 242373160 242369008 0.000000e+00 6870.0
4 TraesCS5A01G138100 chr5D 96.094 768 19 4 5229 5996 242368832 242368076 0.000000e+00 1242.0
5 TraesCS5A01G138100 chr5D 94.415 376 14 4 6033 6405 242367953 242367582 8.100000e-159 571.0
6 TraesCS5A01G138100 chr5D 86.502 526 53 10 6682 7196 242366910 242366392 4.870000e-156 562.0
7 TraesCS5A01G138100 chr5D 96.739 184 6 0 5015 5198 242369012 242368829 2.520000e-79 307.0
8 TraesCS5A01G138100 chr5D 80.692 347 55 10 6855 7196 77747282 77747621 7.160000e-65 259.0
9 TraesCS5A01G138100 chr5D 94.656 131 6 1 6477 6607 242367373 242367244 1.220000e-47 202.0
10 TraesCS5A01G138100 chr5D 97.959 49 1 0 4964 5012 66745392 66745440 1.290000e-12 86.1
11 TraesCS5A01G138100 chr5D 89.091 55 4 2 3181 3235 340845873 340845821 4.660000e-07 67.6
12 TraesCS5A01G138100 chr5B 96.709 3099 87 11 1738 4827 256282966 256286058 0.000000e+00 5144.0
13 TraesCS5A01G138100 chr5B 97.268 1757 36 7 3213 4968 259566101 259564356 0.000000e+00 2968.0
14 TraesCS5A01G138100 chr5B 92.414 1516 71 15 836 2342 259574853 259573373 0.000000e+00 2122.0
15 TraesCS5A01G138100 chr5B 96.573 963 27 3 5015 5975 256286139 256287097 0.000000e+00 1591.0
16 TraesCS5A01G138100 chr5B 95.620 959 32 6 836 1791 256282007 256282958 0.000000e+00 1530.0
17 TraesCS5A01G138100 chr5B 96.067 890 31 3 2331 3217 259573202 259572314 0.000000e+00 1447.0
18 TraesCS5A01G138100 chr5B 96.254 694 20 3 5284 5975 259564209 259563520 0.000000e+00 1133.0
19 TraesCS5A01G138100 chr5B 90.998 511 30 5 6053 6558 259563520 259563021 0.000000e+00 675.0
20 TraesCS5A01G138100 chr5B 79.965 569 62 28 6053 6605 256287097 256287629 8.820000e-99 372.0
21 TraesCS5A01G138100 chr5B 81.995 411 52 13 6682 7074 259560831 259560425 5.380000e-86 329.0
22 TraesCS5A01G138100 chr5B 98.496 133 2 0 5015 5147 259564360 259564228 1.210000e-57 235.0
23 TraesCS5A01G138100 chr5B 95.833 96 3 1 4873 4968 256286049 256286143 3.480000e-33 154.0
24 TraesCS5A01G138100 chr5B 89.091 55 4 2 3181 3235 689299822 689299874 4.660000e-07 67.6
25 TraesCS5A01G138100 chr5B 89.091 55 4 2 3181 3235 691855228 691855176 4.660000e-07 67.6
26 TraesCS5A01G138100 chr7A 92.578 741 28 4 1 740 699626975 699627689 0.000000e+00 1038.0
27 TraesCS5A01G138100 chr7A 87.356 87 6 3 5974 6055 84745820 84745734 2.140000e-15 95.3
28 TraesCS5A01G138100 chr1A 92.541 724 28 3 18 740 444168377 444169075 0.000000e+00 1014.0
29 TraesCS5A01G138100 chr4A 91.840 723 33 3 18 740 36003534 36004230 0.000000e+00 985.0
30 TraesCS5A01G138100 chr3B 91.575 724 25 4 18 741 452562466 452563153 0.000000e+00 966.0
31 TraesCS5A01G138100 chr3B 91.310 725 30 4 18 742 73031970 73031279 0.000000e+00 959.0
32 TraesCS5A01G138100 chr3B 96.730 367 12 0 1 367 792749325 792749691 4.770000e-171 612.0
33 TraesCS5A01G138100 chr3B 90.184 326 28 4 2865 3186 511058456 511058781 8.630000e-114 422.0
34 TraesCS5A01G138100 chr3B 84.483 116 9 5 5953 6060 428685863 428685977 9.870000e-19 106.0
35 TraesCS5A01G138100 chr3B 95.385 65 3 0 740 804 675611918 675611854 3.550000e-18 104.0
36 TraesCS5A01G138100 chr3B 94.828 58 3 0 3236 3293 511058771 511058828 2.760000e-14 91.6
37 TraesCS5A01G138100 chr3B 89.231 65 3 4 4949 5012 241678933 241678872 2.150000e-10 78.7
38 TraesCS5A01G138100 chr2B 90.922 727 30 4 18 743 553880885 553880194 0.000000e+00 944.0
39 TraesCS5A01G138100 chr2B 91.104 326 25 4 2865 3186 711202741 711203066 8.570000e-119 438.0
40 TraesCS5A01G138100 chr2B 90.164 61 4 1 4952 5012 631204972 631204914 2.150000e-10 78.7
41 TraesCS5A01G138100 chr2B 89.091 55 4 2 3181 3235 38391399 38391347 4.660000e-07 67.6
42 TraesCS5A01G138100 chr4B 89.917 724 36 7 18 741 629908014 629907328 0.000000e+00 898.0
43 TraesCS5A01G138100 chr4B 94.987 379 15 4 364 742 665900555 665900181 6.220000e-165 592.0
44 TraesCS5A01G138100 chr4B 94.955 337 13 2 18 351 665900856 665900521 6.400000e-145 525.0
45 TraesCS5A01G138100 chr4B 90.798 326 26 4 2865 3186 241709135 241708810 3.990000e-117 433.0
46 TraesCS5A01G138100 chr4B 84.118 340 49 5 6859 7196 526926807 526926471 2.500000e-84 324.0
47 TraesCS5A01G138100 chr4B 81.556 347 54 8 6856 7196 520518106 520518448 1.980000e-70 278.0
48 TraesCS5A01G138100 chr4B 86.869 99 7 3 5959 6051 92663330 92663232 9.870000e-19 106.0
49 TraesCS5A01G138100 chr4B 93.103 58 4 0 3239 3296 241708817 241708760 1.290000e-12 86.1
50 TraesCS5A01G138100 chr7B 95.143 350 14 2 1 348 720465404 720465752 3.800000e-152 549.0
51 TraesCS5A01G138100 chr7B 84.946 372 39 9 2415 2780 210626945 210627305 1.910000e-95 361.0
52 TraesCS5A01G138100 chr7B 87.912 91 6 2 5971 6056 385504346 385504436 1.280000e-17 102.0
53 TraesCS5A01G138100 chr7B 89.091 55 4 2 3181 3235 440805443 440805495 4.660000e-07 67.6
54 TraesCS5A01G138100 chrUn 89.877 326 29 4 2865 3186 265422489 265422164 4.020000e-112 416.0
55 TraesCS5A01G138100 chrUn 80.645 341 61 4 6856 7196 87092231 87092566 7.160000e-65 259.0
56 TraesCS5A01G138100 chrUn 87.273 55 5 2 3181 3235 16265806 16265754 2.170000e-05 62.1
57 TraesCS5A01G138100 chr6B 89.877 326 29 4 2865 3186 88839226 88839551 4.020000e-112 416.0
58 TraesCS5A01G138100 chr6B 89.877 326 29 4 2865 3186 88857344 88857669 4.020000e-112 416.0
59 TraesCS5A01G138100 chr6B 91.250 80 2 3 5974 6048 632187380 632187301 3.550000e-18 104.0
60 TraesCS5A01G138100 chr6B 88.506 87 4 3 5971 6051 137385764 137385850 4.590000e-17 100.0
61 TraesCS5A01G138100 chr1B 80.296 406 75 5 6791 7196 186467848 186468248 1.170000e-77 302.0
62 TraesCS5A01G138100 chr1B 96.875 64 2 0 740 803 581170487 581170424 2.750000e-19 108.0
63 TraesCS5A01G138100 chr1B 96.296 54 2 0 4959 5012 61526008 61525955 9.940000e-14 89.8
64 TraesCS5A01G138100 chr3A 80.159 378 65 9 6823 7197 216153634 216154004 2.560000e-69 274.0
65 TraesCS5A01G138100 chr3A 95.385 65 3 0 740 804 164438657 164438721 3.550000e-18 104.0
66 TraesCS5A01G138100 chr3A 86.170 94 5 4 5974 6062 110380127 110380037 2.140000e-15 95.3
67 TraesCS5A01G138100 chr3A 87.805 82 8 2 740 820 349761984 349762064 2.140000e-15 95.3
68 TraesCS5A01G138100 chr7D 81.395 344 53 10 6852 7191 42648965 42648629 3.310000e-68 270.0
69 TraesCS5A01G138100 chr7D 96.875 64 2 0 740 803 366659189 366659252 2.750000e-19 108.0
70 TraesCS5A01G138100 chr1D 79.772 351 57 10 6855 7196 436860872 436860527 7.210000e-60 243.0
71 TraesCS5A01G138100 chr1D 96.875 64 2 0 740 803 45808096 45808159 2.750000e-19 108.0
72 TraesCS5A01G138100 chr6D 94.118 68 4 0 740 807 437663132 437663065 3.550000e-18 104.0
73 TraesCS5A01G138100 chr4D 94.118 68 4 0 740 807 467594586 467594653 3.550000e-18 104.0
74 TraesCS5A01G138100 chr2A 92.857 70 5 0 734 803 23933774 23933843 1.280000e-17 102.0
75 TraesCS5A01G138100 chr2A 94.643 56 2 1 4958 5012 44244847 44244792 1.290000e-12 86.1
76 TraesCS5A01G138100 chr2D 89.157 83 4 4 5971 6048 620551037 620551119 1.650000e-16 99.0
77 TraesCS5A01G138100 chr2D 90.164 61 5 1 4953 5012 328362609 328362549 2.150000e-10 78.7
78 TraesCS5A01G138100 chr6A 86.458 96 4 6 5972 6062 150984614 150984705 5.940000e-16 97.1
79 TraesCS5A01G138100 chr3D 97.959 49 1 0 4964 5012 180394994 180394946 1.290000e-12 86.1
80 TraesCS5A01G138100 chr3D 97.959 49 1 0 4964 5012 609606518 609606470 1.290000e-12 86.1
81 TraesCS5A01G138100 chr3D 87.692 65 4 4 4949 5012 165861987 165861926 1.000000e-08 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G138100 chr5A 310728096 310735292 7196 False 13291.000000 13291 100.000000 1 7197 1 chr5A.!!$F1 7196
1 TraesCS5A01G138100 chr5A 705867909 705868584 675 True 553.000000 575 94.723500 18 742 2 chr5A.!!$R1 724
2 TraesCS5A01G138100 chr5D 242366392 242373160 6768 True 1625.666667 6870 94.158333 817 7196 6 chr5D.!!$R2 6379
3 TraesCS5A01G138100 chr5B 259572314 259574853 2539 True 1784.500000 2122 94.240500 836 3217 2 chr5B.!!$R3 2381
4 TraesCS5A01G138100 chr5B 256282007 256287629 5622 False 1758.200000 5144 92.940000 836 6605 5 chr5B.!!$F2 5769
5 TraesCS5A01G138100 chr5B 259560425 259566101 5676 True 1068.000000 2968 93.002200 3213 7074 5 chr5B.!!$R2 3861
6 TraesCS5A01G138100 chr7A 699626975 699627689 714 False 1038.000000 1038 92.578000 1 740 1 chr7A.!!$F1 739
7 TraesCS5A01G138100 chr1A 444168377 444169075 698 False 1014.000000 1014 92.541000 18 740 1 chr1A.!!$F1 722
8 TraesCS5A01G138100 chr4A 36003534 36004230 696 False 985.000000 985 91.840000 18 740 1 chr4A.!!$F1 722
9 TraesCS5A01G138100 chr3B 452562466 452563153 687 False 966.000000 966 91.575000 18 741 1 chr3B.!!$F2 723
10 TraesCS5A01G138100 chr3B 73031279 73031970 691 True 959.000000 959 91.310000 18 742 1 chr3B.!!$R1 724
11 TraesCS5A01G138100 chr2B 553880194 553880885 691 True 944.000000 944 90.922000 18 743 1 chr2B.!!$R2 725
12 TraesCS5A01G138100 chr4B 629907328 629908014 686 True 898.000000 898 89.917000 18 741 1 chr4B.!!$R3 723
13 TraesCS5A01G138100 chr4B 665900181 665900856 675 True 558.500000 592 94.971000 18 742 2 chr4B.!!$R5 724

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
808 836 0.318275 TTGTGATTTTTCACGCGGCC 60.318 50.000 12.47 0.00 43.12 6.13 F
1415 1447 0.186386 GAATCGGAGGAGGAGGAGGA 59.814 60.000 0.00 0.00 0.00 3.71 F
1614 1649 2.466846 GGAGGAGAGAAGAAGAAGGCT 58.533 52.381 0.00 0.00 0.00 4.58 F
2701 2989 3.127895 GCATGATTTTGCGTACCACCTAA 59.872 43.478 0.00 0.00 32.06 2.69 F
3189 3481 1.401530 TCTGCACTAAAACGACGACG 58.598 50.000 5.58 5.58 45.75 5.12 F
4364 4664 4.451900 GAGATGGTATGGTTTTGATCGGT 58.548 43.478 0.00 0.00 0.00 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2632 2920 1.063567 ACTGCAACCCCACAAAGGTAA 60.064 47.619 0.0 0.0 36.27 2.85 R
2679 2967 1.472480 AGGTGGTACGCAAAATCATGC 59.528 47.619 0.0 0.0 43.02 4.06 R
2751 3040 1.880027 CTGTCTTGGTAAAGGTGGCAC 59.120 52.381 9.7 9.7 33.90 5.01 R
4101 4396 3.923017 ACCTCCGCAATTCTTTTCTTG 57.077 42.857 0.0 0.0 0.00 3.02 R
4957 5259 2.682352 GGACAGAGGGAGTACTTCGTAC 59.318 54.545 0.0 0.0 39.10 3.67 R
6236 6670 0.910338 GGTCCTCCCTCCAACTAACC 59.090 60.000 0.0 0.0 0.00 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 1.517257 CGTGCTGGATGAGGTCGAC 60.517 63.158 7.13 7.13 0.00 4.20
339 340 4.830765 CGGCGGCGAAGGGATGAA 62.831 66.667 29.19 0.00 0.00 2.57
340 341 2.897350 GGCGGCGAAGGGATGAAG 60.897 66.667 12.98 0.00 0.00 3.02
341 342 2.897350 GCGGCGAAGGGATGAAGG 60.897 66.667 12.98 0.00 0.00 3.46
342 343 2.203070 CGGCGAAGGGATGAAGGG 60.203 66.667 0.00 0.00 0.00 3.95
343 344 2.517166 GGCGAAGGGATGAAGGGC 60.517 66.667 0.00 0.00 0.00 5.19
344 345 2.897350 GCGAAGGGATGAAGGGCG 60.897 66.667 0.00 0.00 0.00 6.13
345 346 2.203070 CGAAGGGATGAAGGGCGG 60.203 66.667 0.00 0.00 0.00 6.13
346 347 2.517166 GAAGGGATGAAGGGCGGC 60.517 66.667 0.00 0.00 0.00 6.53
347 348 4.489771 AAGGGATGAAGGGCGGCG 62.490 66.667 0.51 0.51 0.00 6.46
474 498 1.585297 CTCGTACGTGTGGGGTTTTT 58.415 50.000 16.05 0.00 0.00 1.94
475 499 1.528161 CTCGTACGTGTGGGGTTTTTC 59.472 52.381 16.05 0.00 0.00 2.29
500 525 4.389687 TCGCTGGTTATTTTTCGTAGGTTC 59.610 41.667 0.00 0.00 0.00 3.62
652 680 1.338136 CGGGAGGTGGGAGCAAGTAT 61.338 60.000 0.00 0.00 0.00 2.12
692 720 1.686325 CCGGATGAGGTGGGACGAAT 61.686 60.000 0.00 0.00 0.00 3.34
743 771 8.602472 ACTGAGACATTAGGAGTAGAGATTTT 57.398 34.615 0.00 0.00 0.00 1.82
744 772 8.691797 ACTGAGACATTAGGAGTAGAGATTTTC 58.308 37.037 0.00 0.00 0.00 2.29
745 773 8.595362 TGAGACATTAGGAGTAGAGATTTTCA 57.405 34.615 0.00 0.00 0.00 2.69
746 774 9.035890 TGAGACATTAGGAGTAGAGATTTTCAA 57.964 33.333 0.00 0.00 0.00 2.69
747 775 9.877178 GAGACATTAGGAGTAGAGATTTTCAAA 57.123 33.333 0.00 0.00 0.00 2.69
753 781 9.672673 TTAGGAGTAGAGATTTTCAAAAGATGG 57.327 33.333 0.00 0.00 0.00 3.51
754 782 6.601217 AGGAGTAGAGATTTTCAAAAGATGGC 59.399 38.462 0.00 0.00 0.00 4.40
755 783 6.183360 GGAGTAGAGATTTTCAAAAGATGGCC 60.183 42.308 0.00 0.00 0.00 5.36
756 784 6.248433 AGTAGAGATTTTCAAAAGATGGCCA 58.752 36.000 8.56 8.56 0.00 5.36
757 785 6.894103 AGTAGAGATTTTCAAAAGATGGCCAT 59.106 34.615 20.96 20.96 0.00 4.40
758 786 6.616237 AGAGATTTTCAAAAGATGGCCATT 57.384 33.333 21.84 1.81 0.00 3.16
759 787 7.012661 AGAGATTTTCAAAAGATGGCCATTT 57.987 32.000 21.84 12.22 0.00 2.32
760 788 7.455891 AGAGATTTTCAAAAGATGGCCATTTT 58.544 30.769 21.84 18.45 0.00 1.82
761 789 7.389607 AGAGATTTTCAAAAGATGGCCATTTTG 59.610 33.333 27.75 27.75 44.18 2.44
762 790 6.999871 AGATTTTCAAAAGATGGCCATTTTGT 59.000 30.769 30.16 20.98 43.58 2.83
763 791 6.374565 TTTTCAAAAGATGGCCATTTTGTG 57.625 33.333 30.16 28.47 43.58 3.33
764 792 3.401182 TCAAAAGATGGCCATTTTGTGC 58.599 40.909 30.16 15.55 43.58 4.57
765 793 3.071312 TCAAAAGATGGCCATTTTGTGCT 59.929 39.130 30.16 17.26 43.58 4.40
766 794 2.754946 AAGATGGCCATTTTGTGCTG 57.245 45.000 21.84 0.00 0.00 4.41
767 795 1.927487 AGATGGCCATTTTGTGCTGA 58.073 45.000 21.84 0.00 0.00 4.26
768 796 2.250031 AGATGGCCATTTTGTGCTGAA 58.750 42.857 21.84 0.00 0.00 3.02
769 797 2.633967 AGATGGCCATTTTGTGCTGAAA 59.366 40.909 21.84 0.00 0.00 2.69
770 798 3.262405 AGATGGCCATTTTGTGCTGAAAT 59.738 39.130 21.84 0.00 0.00 2.17
771 799 3.488778 TGGCCATTTTGTGCTGAAATT 57.511 38.095 0.00 0.00 0.00 1.82
772 800 3.818180 TGGCCATTTTGTGCTGAAATTT 58.182 36.364 0.00 0.00 0.00 1.82
773 801 3.564644 TGGCCATTTTGTGCTGAAATTTG 59.435 39.130 0.00 0.00 0.00 2.32
774 802 3.058085 GGCCATTTTGTGCTGAAATTTGG 60.058 43.478 0.00 0.00 0.00 3.28
775 803 3.609879 GCCATTTTGTGCTGAAATTTGGC 60.610 43.478 0.00 14.17 37.34 4.52
776 804 3.058085 CCATTTTGTGCTGAAATTTGGCC 60.058 43.478 0.00 0.00 0.00 5.36
777 805 2.996249 TTTGTGCTGAAATTTGGCCA 57.004 40.000 0.00 0.00 0.00 5.36
778 806 2.996249 TTGTGCTGAAATTTGGCCAA 57.004 40.000 16.05 16.05 0.00 4.52
779 807 2.996249 TGTGCTGAAATTTGGCCAAA 57.004 40.000 32.12 32.12 34.46 3.28
780 808 2.836262 TGTGCTGAAATTTGGCCAAAG 58.164 42.857 32.85 21.27 33.32 2.77
781 809 2.145536 GTGCTGAAATTTGGCCAAAGG 58.854 47.619 32.85 20.52 33.32 3.11
782 810 1.072015 TGCTGAAATTTGGCCAAAGGG 59.928 47.619 32.85 20.81 33.32 3.95
793 821 3.684693 CCAAAGGGCCAGTTTTGTG 57.315 52.632 19.14 10.86 33.52 3.33
794 822 1.118838 CCAAAGGGCCAGTTTTGTGA 58.881 50.000 19.14 0.00 33.52 3.58
795 823 1.693606 CCAAAGGGCCAGTTTTGTGAT 59.306 47.619 19.14 0.00 33.52 3.06
796 824 2.104622 CCAAAGGGCCAGTTTTGTGATT 59.895 45.455 19.14 0.00 33.52 2.57
797 825 3.433456 CCAAAGGGCCAGTTTTGTGATTT 60.433 43.478 19.14 0.00 33.52 2.17
798 826 4.198530 CAAAGGGCCAGTTTTGTGATTTT 58.801 39.130 6.18 0.00 31.36 1.82
799 827 4.502105 AAGGGCCAGTTTTGTGATTTTT 57.498 36.364 6.18 0.00 0.00 1.94
800 828 4.071961 AGGGCCAGTTTTGTGATTTTTC 57.928 40.909 6.18 0.00 0.00 2.29
801 829 3.454082 AGGGCCAGTTTTGTGATTTTTCA 59.546 39.130 6.18 0.00 0.00 2.69
802 830 3.559655 GGGCCAGTTTTGTGATTTTTCAC 59.440 43.478 4.39 0.00 40.78 3.18
803 831 3.245048 GGCCAGTTTTGTGATTTTTCACG 59.755 43.478 0.00 0.00 43.12 4.35
804 832 3.302415 GCCAGTTTTGTGATTTTTCACGC 60.302 43.478 2.05 0.00 43.12 5.34
805 833 3.061271 CCAGTTTTGTGATTTTTCACGCG 60.061 43.478 3.53 3.53 43.12 6.01
806 834 3.061271 CAGTTTTGTGATTTTTCACGCGG 60.061 43.478 12.47 0.00 43.12 6.46
807 835 1.482278 TTTGTGATTTTTCACGCGGC 58.518 45.000 12.47 0.00 43.12 6.53
808 836 0.318275 TTGTGATTTTTCACGCGGCC 60.318 50.000 12.47 0.00 43.12 6.13
809 837 1.795962 GTGATTTTTCACGCGGCCG 60.796 57.895 24.05 24.05 41.14 6.13
881 910 5.943349 TGAGGACCAAATCGTATAAAGGA 57.057 39.130 0.00 0.00 0.00 3.36
938 969 1.001641 CCCAAACCTGCTCCTCCTG 60.002 63.158 0.00 0.00 0.00 3.86
1158 1190 4.838486 CACTCCTCGCTCGCCGTC 62.838 72.222 0.00 0.00 38.35 4.79
1342 1374 2.488771 TACTCCTCCGCCGTCCAAGA 62.489 60.000 0.00 0.00 0.00 3.02
1413 1445 0.466555 ACGAATCGGAGGAGGAGGAG 60.467 60.000 7.80 0.00 0.00 3.69
1414 1446 1.175983 CGAATCGGAGGAGGAGGAGG 61.176 65.000 0.00 0.00 0.00 4.30
1415 1447 0.186386 GAATCGGAGGAGGAGGAGGA 59.814 60.000 0.00 0.00 0.00 3.71
1524 1556 2.526046 CGGGGTGGAGGACAGGTTT 61.526 63.158 0.00 0.00 0.00 3.27
1571 1603 3.773154 GGAGGAGGGGGAGGAGCT 61.773 72.222 0.00 0.00 0.00 4.09
1614 1649 2.466846 GGAGGAGAGAAGAAGAAGGCT 58.533 52.381 0.00 0.00 0.00 4.58
1620 1655 4.951094 GGAGAGAAGAAGAAGGCTAGTGTA 59.049 45.833 0.00 0.00 0.00 2.90
1668 1703 3.390639 AGGAGGATGTGGATGAAGATGAC 59.609 47.826 0.00 0.00 0.00 3.06
1815 1911 8.429237 TCATTAAGGGAAGCCAAAATTTCTTA 57.571 30.769 0.00 0.00 0.00 2.10
1848 1944 9.613428 TGCAATATAAATGACTTAACAGCTAGT 57.387 29.630 0.00 0.00 0.00 2.57
2121 2223 5.221880 CGATTGTGGTGATTGTGAAAATGT 58.778 37.500 0.00 0.00 0.00 2.71
2166 2269 6.017852 GCTCCTTATATCTGTTAAAGTGTGCC 60.018 42.308 0.00 0.00 0.00 5.01
2276 2379 7.444183 TCTTTCCCAACTTGTAACACATAGAAG 59.556 37.037 0.00 0.00 40.00 2.85
2461 2748 8.752005 TTCATTGACATAGGGGAGAAATTAAG 57.248 34.615 0.00 0.00 0.00 1.85
2632 2920 9.877178 CTGTACTGGAGATTTGAAGTAGTAATT 57.123 33.333 0.00 0.00 0.00 1.40
2679 2967 8.748380 AAACAAGTCTGAAAAGAACAGAAAAG 57.252 30.769 0.00 0.00 44.29 2.27
2701 2989 3.127895 GCATGATTTTGCGTACCACCTAA 59.872 43.478 0.00 0.00 32.06 2.69
2751 3040 9.530129 GTTAGATTTCATACAGAACAACTTTCG 57.470 33.333 0.00 0.00 35.56 3.46
2891 3183 6.479884 AGCAAGTTGATTTTACTGGAGAGAT 58.520 36.000 7.16 0.00 0.00 2.75
2896 3188 7.918076 AGTTGATTTTACTGGAGAGATAACCA 58.082 34.615 0.00 0.00 34.81 3.67
3042 3334 6.620678 ACAATCCGGACATGTTCTTTTAATG 58.379 36.000 16.87 0.00 0.00 1.90
3099 3391 6.343226 TGAAGCTTCAAAAATTCAAAACGG 57.657 33.333 26.61 0.00 33.55 4.44
3189 3481 1.401530 TCTGCACTAAAACGACGACG 58.598 50.000 5.58 5.58 45.75 5.12
3222 3515 5.705609 AGCCTTTAGTACCAAACAATGTG 57.294 39.130 0.00 0.00 0.00 3.21
3223 3516 4.522789 AGCCTTTAGTACCAAACAATGTGG 59.477 41.667 0.00 0.00 42.28 4.17
3533 3827 4.714632 TGTGCTTTTAACCAGCTAAGAGT 58.285 39.130 7.24 0.00 38.19 3.24
3821 4115 5.483811 TGAAGATGCGTAACCAAATAGACA 58.516 37.500 0.00 0.00 0.00 3.41
4364 4664 4.451900 GAGATGGTATGGTTTTGATCGGT 58.548 43.478 0.00 0.00 0.00 4.69
4963 5265 5.576774 CACAAGATGCTTGTCATAGTACGAA 59.423 40.000 9.67 0.00 35.05 3.85
4964 5266 5.807520 ACAAGATGCTTGTCATAGTACGAAG 59.192 40.000 6.97 0.00 35.05 3.79
4965 5267 5.584253 AGATGCTTGTCATAGTACGAAGT 57.416 39.130 0.00 0.00 39.36 3.01
4966 5268 6.694877 AGATGCTTGTCATAGTACGAAGTA 57.305 37.500 0.00 0.00 37.49 2.24
4978 5280 1.836802 ACGAAGTACTCCCTCTGTCC 58.163 55.000 0.00 0.00 41.94 4.02
4979 5281 0.733729 CGAAGTACTCCCTCTGTCCG 59.266 60.000 0.00 0.00 0.00 4.79
4980 5282 1.678123 CGAAGTACTCCCTCTGTCCGA 60.678 57.143 0.00 0.00 0.00 4.55
4981 5283 2.657143 GAAGTACTCCCTCTGTCCGAT 58.343 52.381 0.00 0.00 0.00 4.18
4982 5284 3.743584 CGAAGTACTCCCTCTGTCCGATA 60.744 52.174 0.00 0.00 0.00 2.92
4983 5285 3.947612 AGTACTCCCTCTGTCCGATAA 57.052 47.619 0.00 0.00 0.00 1.75
4984 5286 4.456662 AGTACTCCCTCTGTCCGATAAT 57.543 45.455 0.00 0.00 0.00 1.28
4985 5287 5.579753 AGTACTCCCTCTGTCCGATAATA 57.420 43.478 0.00 0.00 0.00 0.98
4986 5288 6.142259 AGTACTCCCTCTGTCCGATAATAT 57.858 41.667 0.00 0.00 0.00 1.28
4987 5289 7.268212 AGTACTCCCTCTGTCCGATAATATA 57.732 40.000 0.00 0.00 0.00 0.86
4988 5290 7.696981 AGTACTCCCTCTGTCCGATAATATAA 58.303 38.462 0.00 0.00 0.00 0.98
4989 5291 7.830201 AGTACTCCCTCTGTCCGATAATATAAG 59.170 40.741 0.00 0.00 0.00 1.73
4990 5292 6.791371 ACTCCCTCTGTCCGATAATATAAGA 58.209 40.000 0.00 0.00 0.00 2.10
4991 5293 6.887545 ACTCCCTCTGTCCGATAATATAAGAG 59.112 42.308 0.00 0.00 0.00 2.85
4992 5294 5.652891 TCCCTCTGTCCGATAATATAAGAGC 59.347 44.000 0.00 0.00 0.00 4.09
4993 5295 5.449314 CCCTCTGTCCGATAATATAAGAGCG 60.449 48.000 0.00 0.00 0.00 5.03
4994 5296 5.124138 CCTCTGTCCGATAATATAAGAGCGT 59.876 44.000 0.00 0.00 0.00 5.07
4995 5297 6.349445 CCTCTGTCCGATAATATAAGAGCGTT 60.349 42.308 0.00 0.00 0.00 4.84
4996 5298 6.978338 TCTGTCCGATAATATAAGAGCGTTT 58.022 36.000 0.00 0.00 0.00 3.60
4997 5299 7.431249 TCTGTCCGATAATATAAGAGCGTTTT 58.569 34.615 0.00 0.00 0.00 2.43
4998 5300 7.924412 TCTGTCCGATAATATAAGAGCGTTTTT 59.076 33.333 0.00 0.00 0.00 1.94
4999 5301 7.847487 TGTCCGATAATATAAGAGCGTTTTTG 58.153 34.615 0.00 0.00 0.00 2.44
5000 5302 7.707464 TGTCCGATAATATAAGAGCGTTTTTGA 59.293 33.333 0.00 0.00 0.00 2.69
5001 5303 8.002665 GTCCGATAATATAAGAGCGTTTTTGAC 58.997 37.037 0.00 0.00 0.00 3.18
5002 5304 7.707464 TCCGATAATATAAGAGCGTTTTTGACA 59.293 33.333 0.00 0.00 0.00 3.58
5003 5305 7.792508 CCGATAATATAAGAGCGTTTTTGACAC 59.207 37.037 0.00 0.00 0.00 3.67
5004 5306 8.540492 CGATAATATAAGAGCGTTTTTGACACT 58.460 33.333 0.00 0.00 0.00 3.55
5007 5309 8.773404 AATATAAGAGCGTTTTTGACACTAGT 57.227 30.769 0.00 0.00 0.00 2.57
5008 5310 4.795970 AAGAGCGTTTTTGACACTAGTG 57.204 40.909 21.44 21.44 0.00 2.74
5010 5312 4.940463 AGAGCGTTTTTGACACTAGTGTA 58.060 39.130 27.98 11.50 45.05 2.90
5011 5313 4.982916 AGAGCGTTTTTGACACTAGTGTAG 59.017 41.667 27.98 13.76 45.05 2.74
5012 5314 4.056050 AGCGTTTTTGACACTAGTGTAGG 58.944 43.478 27.98 17.68 45.05 3.18
5013 5315 3.185797 GCGTTTTTGACACTAGTGTAGGG 59.814 47.826 27.98 13.71 45.05 3.53
5088 5390 8.017946 GGATATGAAGTTCGCTATTGGAATTTC 58.982 37.037 0.00 3.69 39.30 2.17
5198 5534 3.257375 TGCGTAGGTCACACTTGATACTT 59.743 43.478 0.00 0.00 33.11 2.24
5199 5535 4.243270 GCGTAGGTCACACTTGATACTTT 58.757 43.478 0.00 0.00 33.11 2.66
5200 5536 5.047872 TGCGTAGGTCACACTTGATACTTTA 60.048 40.000 0.00 0.00 33.11 1.85
5201 5537 5.287992 GCGTAGGTCACACTTGATACTTTAC 59.712 44.000 0.00 0.00 33.11 2.01
5202 5538 6.384224 CGTAGGTCACACTTGATACTTTACA 58.616 40.000 0.00 0.00 33.11 2.41
5203 5539 6.527023 CGTAGGTCACACTTGATACTTTACAG 59.473 42.308 0.00 0.00 33.11 2.74
5204 5540 6.420913 AGGTCACACTTGATACTTTACAGT 57.579 37.500 0.00 0.00 36.99 3.55
5205 5541 6.827727 AGGTCACACTTGATACTTTACAGTT 58.172 36.000 0.00 0.00 34.06 3.16
5206 5542 7.959175 AGGTCACACTTGATACTTTACAGTTA 58.041 34.615 0.00 0.00 34.06 2.24
5207 5543 8.594550 AGGTCACACTTGATACTTTACAGTTAT 58.405 33.333 0.00 0.00 34.06 1.89
5208 5544 8.870879 GGTCACACTTGATACTTTACAGTTATC 58.129 37.037 0.00 0.00 34.06 1.75
5209 5545 9.640963 GTCACACTTGATACTTTACAGTTATCT 57.359 33.333 0.00 0.00 34.06 1.98
5314 5650 7.611467 TGTGCATATGTTCTCCTTGTCTTTATT 59.389 33.333 4.29 0.00 0.00 1.40
5505 5841 6.206438 TGTGATAGCTCTCTATTAGACAGCAG 59.794 42.308 19.20 2.97 38.51 4.24
5692 6030 4.806330 TCATGTAACGACTTGTCTTCCTC 58.194 43.478 0.00 0.00 33.50 3.71
5693 6031 3.655276 TGTAACGACTTGTCTTCCTCC 57.345 47.619 0.00 0.00 0.00 4.30
5694 6032 3.228453 TGTAACGACTTGTCTTCCTCCT 58.772 45.455 0.00 0.00 0.00 3.69
5695 6033 3.640029 TGTAACGACTTGTCTTCCTCCTT 59.360 43.478 0.00 0.00 0.00 3.36
5887 6227 1.218316 GGGTTTCACTCGCCTCGAT 59.782 57.895 0.00 0.00 34.61 3.59
5949 6289 5.358442 GCTCTCTACTTCATCACCAGAGTAA 59.642 44.000 0.00 0.00 35.36 2.24
5983 6323 4.730949 TTCAGTTGTATTACTCCCTCCG 57.269 45.455 0.00 0.00 0.00 4.63
5996 6336 8.912614 ATTACTCCCTCCGTTCCTAAATATAT 57.087 34.615 0.00 0.00 0.00 0.86
5998 6338 6.320518 ACTCCCTCCGTTCCTAAATATATGA 58.679 40.000 0.00 0.00 0.00 2.15
6000 6340 5.184479 TCCCTCCGTTCCTAAATATATGACG 59.816 44.000 0.00 0.00 0.00 4.35
6003 6343 6.927381 CCTCCGTTCCTAAATATATGACGTTT 59.073 38.462 0.00 0.00 0.00 3.60
6005 6345 8.133754 TCCGTTCCTAAATATATGACGTTTTG 57.866 34.615 0.00 0.00 0.00 2.44
6007 6347 7.011669 CCGTTCCTAAATATATGACGTTTTGGT 59.988 37.037 0.00 0.00 32.19 3.67
6008 6348 9.033481 CGTTCCTAAATATATGACGTTTTGGTA 57.967 33.333 0.00 0.00 32.19 3.25
6016 6356 9.661563 AATATATGACGTTTTGGTAGTTCTTGA 57.338 29.630 0.00 0.00 0.00 3.02
6018 6358 5.473796 TGACGTTTTGGTAGTTCTTGAAC 57.526 39.130 5.44 5.44 0.00 3.18
6019 6359 5.180271 TGACGTTTTGGTAGTTCTTGAACT 58.820 37.500 18.32 18.32 36.82 3.01
6020 6360 6.339730 TGACGTTTTGGTAGTTCTTGAACTA 58.660 36.000 16.50 16.50 34.37 2.24
6030 6370 3.314357 AGTTCTTGAACTACCAAAACGCC 59.686 43.478 13.62 0.00 0.00 5.68
6031 6371 2.920524 TCTTGAACTACCAAAACGCCA 58.079 42.857 0.00 0.00 0.00 5.69
6051 6477 3.557264 CCATATTTAGGAACGGAGGGAGC 60.557 52.174 0.00 0.00 0.00 4.70
6083 6509 2.205074 AGATTTGGAGTAGCGCAATCG 58.795 47.619 11.47 0.00 39.07 3.34
6145 6572 2.424601 GCTACTTTGCCATGCAGAATCA 59.575 45.455 0.00 0.00 40.61 2.57
6219 6649 2.682952 GCTGCTGCTTACATGCTATG 57.317 50.000 8.53 0.00 36.03 2.23
6225 6655 6.304356 TGCTGCTTACATGCTATGTATTTC 57.696 37.500 0.00 4.23 44.51 2.17
6226 6656 5.050159 TGCTGCTTACATGCTATGTATTTCG 60.050 40.000 0.00 0.00 44.51 3.46
6229 6663 7.571983 GCTGCTTACATGCTATGTATTTCGAAT 60.572 37.037 0.00 0.00 44.51 3.34
6236 6670 6.618287 TGCTATGTATTTCGAATCTTTGGG 57.382 37.500 0.00 0.00 0.00 4.12
6266 6700 2.112297 GAGGACCGCCACCAACAA 59.888 61.111 0.00 0.00 36.29 2.83
6360 6794 3.281341 TGCAGTGTAAAAGCATTTCCG 57.719 42.857 0.00 0.00 37.28 4.30
6371 6805 9.535878 TGTAAAAGCATTTCCGTTTAGAATTTT 57.464 25.926 0.00 0.00 37.28 1.82
6387 6821 6.394345 AGAATTTTTCATAGGGGAGTGAGT 57.606 37.500 0.00 0.00 0.00 3.41
6388 6822 6.183347 AGAATTTTTCATAGGGGAGTGAGTG 58.817 40.000 0.00 0.00 0.00 3.51
6389 6823 4.993705 TTTTTCATAGGGGAGTGAGTGT 57.006 40.909 0.00 0.00 0.00 3.55
6426 6860 1.616159 GGGTTAGCAGTGCTGGAAAA 58.384 50.000 27.97 11.01 40.10 2.29
6491 7112 2.080693 GGTTCAATGCATCGGTGTGTA 58.919 47.619 0.00 0.00 0.00 2.90
6639 7295 3.606595 CGGGAGCATCATCATCATAGT 57.393 47.619 0.00 0.00 36.25 2.12
6642 7298 4.758674 CGGGAGCATCATCATCATAGTTTT 59.241 41.667 0.00 0.00 36.25 2.43
6643 7299 5.240183 CGGGAGCATCATCATCATAGTTTTT 59.760 40.000 0.00 0.00 36.25 1.94
6676 7332 4.741321 TTTTTGCTGGGGAATCATCATC 57.259 40.909 0.00 0.00 0.00 2.92
6677 7333 3.385314 TTTGCTGGGGAATCATCATCA 57.615 42.857 0.00 0.00 0.00 3.07
6679 7335 3.150458 TGCTGGGGAATCATCATCATC 57.850 47.619 0.00 0.00 0.00 2.92
6680 7336 2.444010 TGCTGGGGAATCATCATCATCA 59.556 45.455 0.00 0.00 0.00 3.07
6728 9460 0.878961 GTTCAACTCCAACGGACGCT 60.879 55.000 0.00 0.00 0.00 5.07
6735 9467 1.535462 CTCCAACGGACGCTCATTTTT 59.465 47.619 0.00 0.00 0.00 1.94
6774 9516 0.177141 TCCGGCCGTTTTCCTAGATG 59.823 55.000 26.12 3.58 0.00 2.90
6779 9521 1.805120 GCCGTTTTCCTAGATGCGCTA 60.805 52.381 9.73 0.00 0.00 4.26
6780 9522 2.546778 CCGTTTTCCTAGATGCGCTAA 58.453 47.619 9.73 0.00 0.00 3.09
6801 9543 0.813610 CGTTGGGCGCATCTAATCCA 60.814 55.000 10.83 1.64 0.00 3.41
6924 9673 3.691609 CACCAATTCTTCACTAGGGAAGC 59.308 47.826 27.05 0.00 43.14 3.86
6936 9685 2.464157 AGGGAAGCGAGAACAAAGAG 57.536 50.000 0.00 0.00 0.00 2.85
6941 9690 3.059529 GGAAGCGAGAACAAAGAGAACAC 60.060 47.826 0.00 0.00 0.00 3.32
6949 9698 6.018751 CGAGAACAAAGAGAACACAGAATCAA 60.019 38.462 0.00 0.00 0.00 2.57
6953 9702 9.950680 GAACAAAGAGAACACAGAATCAAAATA 57.049 29.630 0.00 0.00 0.00 1.40
6968 9717 9.971922 AGAATCAAAATAAGACACTTCAAAAGG 57.028 29.630 0.00 0.00 0.00 3.11
6987 9736 9.757227 TCAAAAGGTAACCAACTTTCATAAATG 57.243 29.630 0.00 0.00 35.99 2.32
7056 9805 0.028770 CGGCTTTTCGAGTTTGCACA 59.971 50.000 0.00 0.00 0.00 4.57
7060 9809 3.242936 GGCTTTTCGAGTTTGCACACTTA 60.243 43.478 7.01 0.00 0.00 2.24
7075 9824 7.428282 TGCACACTTATTTCTTGTTCGATTA 57.572 32.000 0.00 0.00 0.00 1.75
7088 9837 8.251750 TCTTGTTCGATTACAAAGAATTCGAT 57.748 30.769 4.37 0.00 37.55 3.59
7089 9838 8.168626 TCTTGTTCGATTACAAAGAATTCGATG 58.831 33.333 10.74 10.74 37.55 3.84
7091 9840 7.802738 TGTTCGATTACAAAGAATTCGATGTT 58.197 30.769 19.64 7.30 0.00 2.71
7092 9841 7.744276 TGTTCGATTACAAAGAATTCGATGTTG 59.256 33.333 19.64 14.95 0.00 3.33
7096 9845 7.902917 CGATTACAAAGAATTCGATGTTGCTTA 59.097 33.333 19.64 4.05 0.00 3.09
7113 9862 5.584253 TGCTTAACATCTAGTCTCACCTC 57.416 43.478 0.00 0.00 0.00 3.85
7125 9874 4.100373 AGTCTCACCTCTAGCCTTCATTT 58.900 43.478 0.00 0.00 0.00 2.32
7135 9884 5.242434 TCTAGCCTTCATTTTAGCAACGAA 58.758 37.500 0.00 0.00 0.00 3.85
7153 9902 4.507710 ACGAATGCTCAAGCTTCTATCAA 58.492 39.130 0.00 0.00 42.66 2.57
7154 9903 5.121811 ACGAATGCTCAAGCTTCTATCAAT 58.878 37.500 0.00 0.00 42.66 2.57
7155 9904 5.587844 ACGAATGCTCAAGCTTCTATCAATT 59.412 36.000 0.00 0.00 42.66 2.32
7162 9911 7.040201 TGCTCAAGCTTCTATCAATTTTCTTGT 60.040 33.333 0.00 0.00 42.66 3.16
7192 9941 8.715998 CAATAGATCAATGTAATCTTCTTCCCG 58.284 37.037 0.00 0.00 35.20 5.14
7196 9945 8.820831 AGATCAATGTAATCTTCTTCCCGATAT 58.179 33.333 0.00 0.00 29.01 1.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
298 299 0.670546 CGGTCTCACATCAAAGGCGT 60.671 55.000 0.00 0.00 0.00 5.68
346 347 4.830765 TTCATCCCTTCGCCGCCG 62.831 66.667 0.00 0.00 0.00 6.46
347 348 2.897350 CTTCATCCCTTCGCCGCC 60.897 66.667 0.00 0.00 0.00 6.13
348 349 2.897350 CCTTCATCCCTTCGCCGC 60.897 66.667 0.00 0.00 0.00 6.53
349 350 2.203070 CCCTTCATCCCTTCGCCG 60.203 66.667 0.00 0.00 0.00 6.46
350 351 2.517166 GCCCTTCATCCCTTCGCC 60.517 66.667 0.00 0.00 0.00 5.54
351 352 2.897350 CGCCCTTCATCCCTTCGC 60.897 66.667 0.00 0.00 0.00 4.70
352 353 2.203070 CCGCCCTTCATCCCTTCG 60.203 66.667 0.00 0.00 0.00 3.79
353 354 2.517166 GCCGCCCTTCATCCCTTC 60.517 66.667 0.00 0.00 0.00 3.46
354 355 4.489771 CGCCGCCCTTCATCCCTT 62.490 66.667 0.00 0.00 0.00 3.95
465 487 0.106419 ACCAGCGAAGAAAAACCCCA 60.106 50.000 0.00 0.00 0.00 4.96
474 498 4.628333 CCTACGAAAAATAACCAGCGAAGA 59.372 41.667 0.00 0.00 0.00 2.87
475 499 4.390909 ACCTACGAAAAATAACCAGCGAAG 59.609 41.667 0.00 0.00 0.00 3.79
500 525 9.834628 TCTACAAAAATTAACCAGCGATAAAAG 57.165 29.630 0.00 0.00 0.00 2.27
677 705 5.374071 GGTTTTATATTCGTCCCACCTCAT 58.626 41.667 0.00 0.00 0.00 2.90
692 720 3.324993 AGTTCGCGTTTCGGGTTTTATA 58.675 40.909 5.77 0.00 40.60 0.98
743 771 3.071312 AGCACAAAATGGCCATCTTTTGA 59.929 39.130 35.04 4.67 42.31 2.69
744 772 3.187637 CAGCACAAAATGGCCATCTTTTG 59.812 43.478 30.12 30.12 44.22 2.44
745 773 3.071312 TCAGCACAAAATGGCCATCTTTT 59.929 39.130 21.08 15.05 0.00 2.27
746 774 2.633967 TCAGCACAAAATGGCCATCTTT 59.366 40.909 21.08 17.71 0.00 2.52
747 775 2.250031 TCAGCACAAAATGGCCATCTT 58.750 42.857 21.08 9.08 0.00 2.40
748 776 1.927487 TCAGCACAAAATGGCCATCT 58.073 45.000 21.08 0.36 0.00 2.90
749 777 2.747396 TTCAGCACAAAATGGCCATC 57.253 45.000 21.08 5.06 0.00 3.51
750 778 3.706600 ATTTCAGCACAAAATGGCCAT 57.293 38.095 14.09 14.09 0.00 4.40
751 779 3.488778 AATTTCAGCACAAAATGGCCA 57.511 38.095 8.56 8.56 0.00 5.36
752 780 3.058085 CCAAATTTCAGCACAAAATGGCC 60.058 43.478 0.00 0.00 0.00 5.36
753 781 3.609879 GCCAAATTTCAGCACAAAATGGC 60.610 43.478 17.35 17.35 41.36 4.40
754 782 3.058085 GGCCAAATTTCAGCACAAAATGG 60.058 43.478 0.00 9.49 32.94 3.16
755 783 3.564644 TGGCCAAATTTCAGCACAAAATG 59.435 39.130 0.61 0.00 0.00 2.32
756 784 3.818180 TGGCCAAATTTCAGCACAAAAT 58.182 36.364 0.61 0.00 0.00 1.82
757 785 3.272574 TGGCCAAATTTCAGCACAAAA 57.727 38.095 0.61 0.00 0.00 2.44
758 786 2.996249 TGGCCAAATTTCAGCACAAA 57.004 40.000 0.61 0.00 0.00 2.83
759 787 2.996249 TTGGCCAAATTTCAGCACAA 57.004 40.000 17.98 9.49 0.00 3.33
760 788 2.485124 CCTTTGGCCAAATTTCAGCACA 60.485 45.455 30.46 5.14 0.00 4.57
761 789 2.145536 CCTTTGGCCAAATTTCAGCAC 58.854 47.619 30.46 2.93 0.00 4.40
762 790 1.072015 CCCTTTGGCCAAATTTCAGCA 59.928 47.619 30.46 6.72 0.00 4.41
763 791 1.812235 CCCTTTGGCCAAATTTCAGC 58.188 50.000 30.46 1.77 0.00 4.26
775 803 1.118838 TCACAAAACTGGCCCTTTGG 58.881 50.000 20.16 10.27 36.94 3.28
776 804 3.473923 AATCACAAAACTGGCCCTTTG 57.526 42.857 16.47 16.47 38.29 2.77
777 805 4.502105 AAAATCACAAAACTGGCCCTTT 57.498 36.364 0.00 0.00 0.00 3.11
778 806 4.080638 TGAAAAATCACAAAACTGGCCCTT 60.081 37.500 0.00 0.00 0.00 3.95
779 807 3.454082 TGAAAAATCACAAAACTGGCCCT 59.546 39.130 0.00 0.00 0.00 5.19
780 808 3.559655 GTGAAAAATCACAAAACTGGCCC 59.440 43.478 0.00 0.00 40.16 5.80
781 809 3.245048 CGTGAAAAATCACAAAACTGGCC 59.755 43.478 9.39 0.00 40.42 5.36
782 810 3.302415 GCGTGAAAAATCACAAAACTGGC 60.302 43.478 9.39 0.00 40.42 4.85
783 811 3.061271 CGCGTGAAAAATCACAAAACTGG 60.061 43.478 0.00 0.00 40.42 4.00
784 812 3.061271 CCGCGTGAAAAATCACAAAACTG 60.061 43.478 4.92 0.00 40.42 3.16
785 813 3.112580 CCGCGTGAAAAATCACAAAACT 58.887 40.909 4.92 0.00 40.42 2.66
786 814 2.347200 GCCGCGTGAAAAATCACAAAAC 60.347 45.455 4.92 0.00 40.42 2.43
787 815 1.855360 GCCGCGTGAAAAATCACAAAA 59.145 42.857 4.92 0.00 40.42 2.44
788 816 1.482278 GCCGCGTGAAAAATCACAAA 58.518 45.000 4.92 0.00 40.42 2.83
789 817 0.318275 GGCCGCGTGAAAAATCACAA 60.318 50.000 4.92 0.00 40.42 3.33
790 818 1.284408 GGCCGCGTGAAAAATCACA 59.716 52.632 4.92 0.00 40.42 3.58
791 819 1.795962 CGGCCGCGTGAAAAATCAC 60.796 57.895 14.67 0.00 37.27 3.06
792 820 1.787057 AACGGCCGCGTGAAAAATCA 61.787 50.000 28.58 0.00 0.00 2.57
793 821 1.081708 AACGGCCGCGTGAAAAATC 60.082 52.632 28.58 0.00 0.00 2.17
794 822 1.371145 CAACGGCCGCGTGAAAAAT 60.371 52.632 28.58 0.00 0.00 1.82
795 823 2.024871 CAACGGCCGCGTGAAAAA 59.975 55.556 28.58 0.00 0.00 1.94
796 824 3.955101 CCAACGGCCGCGTGAAAA 61.955 61.111 28.58 0.00 0.00 2.29
797 825 4.912485 TCCAACGGCCGCGTGAAA 62.912 61.111 28.58 12.29 0.00 2.69
803 831 3.692370 ATAACCCTCCAACGGCCGC 62.692 63.158 28.58 0.00 0.00 6.53
804 832 1.817941 CATAACCCTCCAACGGCCG 60.818 63.158 26.86 26.86 0.00 6.13
805 833 0.463833 CTCATAACCCTCCAACGGCC 60.464 60.000 0.00 0.00 0.00 6.13
806 834 1.095807 GCTCATAACCCTCCAACGGC 61.096 60.000 0.00 0.00 0.00 5.68
807 835 0.541863 AGCTCATAACCCTCCAACGG 59.458 55.000 0.00 0.00 0.00 4.44
808 836 2.009774 CAAGCTCATAACCCTCCAACG 58.990 52.381 0.00 0.00 0.00 4.10
809 837 2.026262 TCCAAGCTCATAACCCTCCAAC 60.026 50.000 0.00 0.00 0.00 3.77
810 838 2.239654 CTCCAAGCTCATAACCCTCCAA 59.760 50.000 0.00 0.00 0.00 3.53
811 839 1.839994 CTCCAAGCTCATAACCCTCCA 59.160 52.381 0.00 0.00 0.00 3.86
812 840 1.141858 CCTCCAAGCTCATAACCCTCC 59.858 57.143 0.00 0.00 0.00 4.30
813 841 1.141858 CCCTCCAAGCTCATAACCCTC 59.858 57.143 0.00 0.00 0.00 4.30
814 842 1.216990 CCCTCCAAGCTCATAACCCT 58.783 55.000 0.00 0.00 0.00 4.34
815 843 0.919710 ACCCTCCAAGCTCATAACCC 59.080 55.000 0.00 0.00 0.00 4.11
904 934 5.965705 AGGTTTGGGTTTTAGGGTTTTAACT 59.034 36.000 0.00 0.00 0.00 2.24
938 969 3.119096 GGCGACGCTGGGAAAGAC 61.119 66.667 20.77 0.00 0.00 3.01
1342 1374 3.764466 CTCCTCGGCTTCAGCGGT 61.764 66.667 6.29 0.00 43.26 5.68
1413 1445 2.692368 TCCAGGCCACCCTCATCC 60.692 66.667 5.01 0.00 40.33 3.51
1414 1446 2.750657 CCTCCAGGCCACCCTCATC 61.751 68.421 5.01 0.00 40.33 2.92
1415 1447 2.693864 CCTCCAGGCCACCCTCAT 60.694 66.667 5.01 0.00 40.33 2.90
1524 1556 3.190383 TCCAGGTCCTTCATCTTCAGA 57.810 47.619 0.00 0.00 0.00 3.27
1571 1603 1.914764 GAACCCCCACCGTACTCCA 60.915 63.158 0.00 0.00 0.00 3.86
1614 1649 4.768448 TCGTCCTCCATCAAGTTTACACTA 59.232 41.667 0.00 0.00 30.68 2.74
1620 1655 4.466370 TCACTATCGTCCTCCATCAAGTTT 59.534 41.667 0.00 0.00 0.00 2.66
1668 1703 1.417517 TCATCTTCATCATCACCCCCG 59.582 52.381 0.00 0.00 0.00 5.73
1848 1944 4.082136 TGCAATGCATTTCATGAACTAGCA 60.082 37.500 22.97 22.97 35.13 3.49
1983 2084 5.772672 ACAGTTAATAGTGCCACCAATCAAA 59.227 36.000 0.00 0.00 0.00 2.69
2121 2223 8.523915 AGGAGCACATAATACAAATTGATTCA 57.476 30.769 0.00 0.00 0.00 2.57
2166 2269 2.340337 TGATCGATGAACTGTGCTGTG 58.660 47.619 0.54 0.00 0.00 3.66
2298 2401 4.898014 TCCCAATTATCCACCCTTTGAT 57.102 40.909 0.00 0.00 0.00 2.57
2300 2403 5.955961 AATTCCCAATTATCCACCCTTTG 57.044 39.130 0.00 0.00 0.00 2.77
2336 2439 7.120579 TGTGGAATTTCTAGAACGTGCATAAAT 59.879 33.333 4.18 0.00 0.00 1.40
2461 2748 8.204836 AGTCCATCTCCACACAAGTATTAATAC 58.795 37.037 16.44 16.44 0.00 1.89
2632 2920 1.063567 ACTGCAACCCCACAAAGGTAA 60.064 47.619 0.00 0.00 36.27 2.85
2679 2967 1.472480 AGGTGGTACGCAAAATCATGC 59.528 47.619 0.00 0.00 43.02 4.06
2751 3040 1.880027 CTGTCTTGGTAAAGGTGGCAC 59.120 52.381 9.70 9.70 33.90 5.01
2891 3183 6.707161 AGCAAATAAGTTGTACGACTTGGTTA 59.293 34.615 30.78 16.28 39.99 2.85
2896 3188 5.049680 CACCAGCAAATAAGTTGTACGACTT 60.050 40.000 27.48 27.48 42.27 3.01
3189 3481 5.066764 TGGTACTAAAGGCTTTGTTGTTGTC 59.933 40.000 22.32 11.09 0.00 3.18
3223 3516 2.501316 TCGTTTTAGTTAGCCTACCCCC 59.499 50.000 0.00 0.00 0.00 5.40
3569 3863 5.670485 TCTCTTCTTGACTTGTTGCTTACA 58.330 37.500 0.00 0.00 34.12 2.41
3650 3944 8.812513 TCATTTACATCATCCTTCTCAATGTT 57.187 30.769 0.00 0.00 33.01 2.71
3821 4115 7.051000 GGTTCAAGACTAGCTTTCTCCATTAT 58.949 38.462 0.00 0.00 33.60 1.28
4101 4396 3.923017 ACCTCCGCAATTCTTTTCTTG 57.077 42.857 0.00 0.00 0.00 3.02
4340 4639 4.450976 CGATCAAAACCATACCATCTCCA 58.549 43.478 0.00 0.00 0.00 3.86
4468 4768 8.498054 AGACAATACAGACCTCATAATGTTTG 57.502 34.615 0.00 0.00 0.00 2.93
4731 5033 5.347342 TGCACAACAATTAAGACCAACAAG 58.653 37.500 0.00 0.00 0.00 3.16
4826 5128 3.931907 ACATCTGGCATGCCTTTACTA 57.068 42.857 35.53 14.98 36.94 1.82
4957 5259 2.682352 GGACAGAGGGAGTACTTCGTAC 59.318 54.545 0.00 0.00 39.10 3.67
4963 5265 3.947612 TTATCGGACAGAGGGAGTACT 57.052 47.619 0.00 0.00 0.00 2.73
4964 5266 7.828223 TCTTATATTATCGGACAGAGGGAGTAC 59.172 40.741 0.00 0.00 0.00 2.73
4965 5267 7.925622 TCTTATATTATCGGACAGAGGGAGTA 58.074 38.462 0.00 0.00 0.00 2.59
4966 5268 6.791371 TCTTATATTATCGGACAGAGGGAGT 58.209 40.000 0.00 0.00 0.00 3.85
4967 5269 6.183360 GCTCTTATATTATCGGACAGAGGGAG 60.183 46.154 0.00 0.00 0.00 4.30
4968 5270 5.652891 GCTCTTATATTATCGGACAGAGGGA 59.347 44.000 0.00 0.00 0.00 4.20
4969 5271 5.449314 CGCTCTTATATTATCGGACAGAGGG 60.449 48.000 0.00 0.00 34.68 4.30
4970 5272 5.124138 ACGCTCTTATATTATCGGACAGAGG 59.876 44.000 0.00 0.00 0.00 3.69
4971 5273 6.184580 ACGCTCTTATATTATCGGACAGAG 57.815 41.667 0.00 0.00 0.00 3.35
4972 5274 6.570672 AACGCTCTTATATTATCGGACAGA 57.429 37.500 0.00 0.00 0.00 3.41
4973 5275 7.639162 AAAACGCTCTTATATTATCGGACAG 57.361 36.000 0.00 0.00 0.00 3.51
4974 5276 7.707464 TCAAAAACGCTCTTATATTATCGGACA 59.293 33.333 0.00 0.00 0.00 4.02
4975 5277 8.002665 GTCAAAAACGCTCTTATATTATCGGAC 58.997 37.037 0.00 0.00 0.00 4.79
4976 5278 7.707464 TGTCAAAAACGCTCTTATATTATCGGA 59.293 33.333 0.00 0.00 0.00 4.55
4977 5279 7.792508 GTGTCAAAAACGCTCTTATATTATCGG 59.207 37.037 0.00 0.00 35.42 4.18
4978 5280 8.540492 AGTGTCAAAAACGCTCTTATATTATCG 58.460 33.333 0.00 0.00 45.69 2.92
4981 5283 9.865321 ACTAGTGTCAAAAACGCTCTTATATTA 57.135 29.630 0.00 0.00 45.69 0.98
4982 5284 8.656849 CACTAGTGTCAAAAACGCTCTTATATT 58.343 33.333 15.06 0.00 45.69 1.28
4983 5285 7.817962 ACACTAGTGTCAAAAACGCTCTTATAT 59.182 33.333 22.95 0.00 45.69 0.86
4984 5286 7.149973 ACACTAGTGTCAAAAACGCTCTTATA 58.850 34.615 22.95 0.00 45.69 0.98
4985 5287 5.989777 ACACTAGTGTCAAAAACGCTCTTAT 59.010 36.000 22.95 0.00 45.69 1.73
4986 5288 5.353938 ACACTAGTGTCAAAAACGCTCTTA 58.646 37.500 22.95 0.00 45.69 2.10
4987 5289 4.189231 ACACTAGTGTCAAAAACGCTCTT 58.811 39.130 22.95 0.00 45.69 2.85
4988 5290 3.793559 ACACTAGTGTCAAAAACGCTCT 58.206 40.909 22.95 0.00 45.69 4.09
4989 5291 4.150098 CCTACACTAGTGTCAAAAACGCTC 59.850 45.833 31.11 0.00 45.69 5.03
4991 5293 3.185797 CCCTACACTAGTGTCAAAAACGC 59.814 47.826 31.11 0.00 43.74 4.84
4992 5294 4.624015 TCCCTACACTAGTGTCAAAAACG 58.376 43.478 31.11 12.93 43.74 3.60
4993 5295 5.608449 ACTCCCTACACTAGTGTCAAAAAC 58.392 41.667 31.11 0.00 43.74 2.43
4994 5296 5.881923 ACTCCCTACACTAGTGTCAAAAA 57.118 39.130 31.11 13.19 43.74 1.94
4995 5297 5.834742 TGTACTCCCTACACTAGTGTCAAAA 59.165 40.000 31.11 13.57 43.74 2.44
4996 5298 5.387788 TGTACTCCCTACACTAGTGTCAAA 58.612 41.667 31.11 13.94 43.74 2.69
4997 5299 4.989277 TGTACTCCCTACACTAGTGTCAA 58.011 43.478 31.11 14.69 43.74 3.18
4998 5300 4.645863 TGTACTCCCTACACTAGTGTCA 57.354 45.455 31.11 17.32 43.74 3.58
4999 5301 6.527057 AATTGTACTCCCTACACTAGTGTC 57.473 41.667 31.11 14.95 43.74 3.67
5000 5302 6.930068 AAATTGTACTCCCTACACTAGTGT 57.070 37.500 30.13 30.13 46.87 3.55
5001 5303 9.886132 ATTAAAATTGTACTCCCTACACTAGTG 57.114 33.333 21.44 21.44 34.91 2.74
5005 5307 7.983484 CGGTATTAAAATTGTACTCCCTACACT 59.017 37.037 0.00 0.00 34.91 3.55
5006 5308 7.981225 TCGGTATTAAAATTGTACTCCCTACAC 59.019 37.037 0.00 0.00 34.91 2.90
5007 5309 8.076910 TCGGTATTAAAATTGTACTCCCTACA 57.923 34.615 0.00 0.00 33.18 2.74
5008 5310 8.985805 CATCGGTATTAAAATTGTACTCCCTAC 58.014 37.037 0.00 0.00 0.00 3.18
5009 5311 7.658575 GCATCGGTATTAAAATTGTACTCCCTA 59.341 37.037 0.00 0.00 0.00 3.53
5010 5312 6.485648 GCATCGGTATTAAAATTGTACTCCCT 59.514 38.462 0.00 0.00 0.00 4.20
5011 5313 6.485648 AGCATCGGTATTAAAATTGTACTCCC 59.514 38.462 0.00 0.00 0.00 4.30
5012 5314 7.225931 TGAGCATCGGTATTAAAATTGTACTCC 59.774 37.037 0.00 0.00 38.61 3.85
5013 5315 8.138365 TGAGCATCGGTATTAAAATTGTACTC 57.862 34.615 0.00 0.00 38.61 2.59
5088 5390 6.753107 AATGGAGTATTTTTCTAACACCGG 57.247 37.500 0.00 0.00 0.00 5.28
5170 5472 3.887621 AGTGTGACCTACGCAATATGT 57.112 42.857 0.00 0.00 42.29 2.29
5214 5550 6.294843 GCCAATGTAGTAAGGGCACTTAAAAA 60.295 38.462 10.72 0.00 44.01 1.94
5215 5551 5.184287 GCCAATGTAGTAAGGGCACTTAAAA 59.816 40.000 10.72 0.00 44.01 1.52
5216 5552 4.703093 GCCAATGTAGTAAGGGCACTTAAA 59.297 41.667 10.72 0.00 44.01 1.52
5217 5553 4.266714 GCCAATGTAGTAAGGGCACTTAA 58.733 43.478 10.72 0.00 44.01 1.85
5218 5554 3.371166 GGCCAATGTAGTAAGGGCACTTA 60.371 47.826 3.71 3.71 46.37 2.24
5219 5555 2.620627 GGCCAATGTAGTAAGGGCACTT 60.621 50.000 6.40 6.40 46.37 3.16
5220 5556 1.064685 GGCCAATGTAGTAAGGGCACT 60.065 52.381 0.00 0.00 46.37 4.40
5221 5557 1.389555 GGCCAATGTAGTAAGGGCAC 58.610 55.000 0.00 0.00 46.37 5.01
5222 5558 3.894742 GGCCAATGTAGTAAGGGCA 57.105 52.632 0.00 0.00 46.37 5.36
5223 5559 1.749063 GTTGGCCAATGTAGTAAGGGC 59.251 52.381 23.66 0.00 45.99 5.19
5224 5560 3.366052 AGTTGGCCAATGTAGTAAGGG 57.634 47.619 23.66 0.00 0.00 3.95
5225 5561 4.331968 TCAAGTTGGCCAATGTAGTAAGG 58.668 43.478 23.66 4.42 0.00 2.69
5226 5562 6.515272 AATCAAGTTGGCCAATGTAGTAAG 57.485 37.500 23.66 6.38 0.00 2.34
5227 5563 6.909550 AAATCAAGTTGGCCAATGTAGTAA 57.090 33.333 23.66 4.41 0.00 2.24
5228 5564 6.909550 AAAATCAAGTTGGCCAATGTAGTA 57.090 33.333 23.66 6.06 0.00 1.82
5229 5565 5.806654 AAAATCAAGTTGGCCAATGTAGT 57.193 34.783 23.66 5.62 0.00 2.73
5230 5566 6.256321 GCATAAAATCAAGTTGGCCAATGTAG 59.744 38.462 23.66 12.30 0.00 2.74
5231 5567 6.070881 AGCATAAAATCAAGTTGGCCAATGTA 60.071 34.615 23.66 8.34 0.00 2.29
5505 5841 9.511144 AAATTGCAAACTTTAGGTATTATACGC 57.489 29.630 1.71 0.00 0.00 4.42
5864 6204 1.529713 GGCGAGTGAAACCCCCAAA 60.530 57.895 0.00 0.00 37.80 3.28
5867 6207 2.046217 GAGGCGAGTGAAACCCCC 60.046 66.667 0.00 0.00 37.80 5.40
5887 6227 2.316108 GGGAGGACTTTTTGAAAGCCA 58.684 47.619 12.83 0.00 0.00 4.75
5894 6234 5.337578 TTGTTTCTTGGGAGGACTTTTTG 57.662 39.130 0.00 0.00 0.00 2.44
5895 6235 5.660864 TCATTGTTTCTTGGGAGGACTTTTT 59.339 36.000 0.00 0.00 0.00 1.94
5996 6336 5.473796 GTTCAAGAACTACCAAAACGTCA 57.526 39.130 5.72 0.00 38.25 4.35
6009 6349 3.065648 TGGCGTTTTGGTAGTTCAAGAAC 59.934 43.478 4.82 4.82 41.45 3.01
6012 6352 3.915437 ATGGCGTTTTGGTAGTTCAAG 57.085 42.857 0.00 0.00 0.00 3.02
6013 6353 5.968528 AATATGGCGTTTTGGTAGTTCAA 57.031 34.783 0.00 0.00 0.00 2.69
6014 6354 5.968528 AAATATGGCGTTTTGGTAGTTCA 57.031 34.783 0.00 0.00 0.00 3.18
6015 6355 6.316890 TCCTAAATATGGCGTTTTGGTAGTTC 59.683 38.462 8.99 0.00 34.48 3.01
6016 6356 6.181908 TCCTAAATATGGCGTTTTGGTAGTT 58.818 36.000 8.99 0.00 34.48 2.24
6018 6358 6.492254 GTTCCTAAATATGGCGTTTTGGTAG 58.508 40.000 8.99 0.00 34.48 3.18
6019 6359 5.064962 CGTTCCTAAATATGGCGTTTTGGTA 59.935 40.000 8.99 0.46 34.48 3.25
6020 6360 4.142556 CGTTCCTAAATATGGCGTTTTGGT 60.143 41.667 8.99 0.00 34.48 3.67
6021 6361 4.347813 CGTTCCTAAATATGGCGTTTTGG 58.652 43.478 0.00 0.00 34.25 3.28
6023 6363 4.263435 TCCGTTCCTAAATATGGCGTTTT 58.737 39.130 0.00 0.00 0.00 2.43
6025 6365 3.463944 CTCCGTTCCTAAATATGGCGTT 58.536 45.455 0.00 0.00 0.00 4.84
6027 6367 2.413837 CCTCCGTTCCTAAATATGGCG 58.586 52.381 0.00 0.00 0.00 5.69
6028 6368 2.370849 TCCCTCCGTTCCTAAATATGGC 59.629 50.000 0.00 0.00 0.00 4.40
6030 6370 3.071023 TGCTCCCTCCGTTCCTAAATATG 59.929 47.826 0.00 0.00 0.00 1.78
6031 6371 3.314693 TGCTCCCTCCGTTCCTAAATAT 58.685 45.455 0.00 0.00 0.00 1.28
6051 6477 7.116948 CGCTACTCCAAATCTTCCAATATACTG 59.883 40.741 0.00 0.00 0.00 2.74
6091 6517 3.023119 TGTTGCCAACACAATTCAGTCT 58.977 40.909 6.08 0.00 36.25 3.24
6145 6572 2.753029 GCTGGCCTCTCCTTGTGT 59.247 61.111 3.32 0.00 35.26 3.72
6219 6649 6.997239 ACTAACCCCAAAGATTCGAAATAC 57.003 37.500 0.00 0.00 0.00 1.89
6225 6655 3.681593 TCCAACTAACCCCAAAGATTCG 58.318 45.455 0.00 0.00 0.00 3.34
6226 6656 4.017126 CCTCCAACTAACCCCAAAGATTC 58.983 47.826 0.00 0.00 0.00 2.52
6229 6663 1.708551 CCCTCCAACTAACCCCAAAGA 59.291 52.381 0.00 0.00 0.00 2.52
6236 6670 0.910338 GGTCCTCCCTCCAACTAACC 59.090 60.000 0.00 0.00 0.00 2.85
6266 6700 4.769688 TCAGATCACGAAAGGCATTACAT 58.230 39.130 0.00 0.00 0.00 2.29
6360 6794 8.575649 TCACTCCCCTATGAAAAATTCTAAAC 57.424 34.615 0.00 0.00 0.00 2.01
6371 6805 3.248024 ACAACACTCACTCCCCTATGAA 58.752 45.455 0.00 0.00 0.00 2.57
6387 6821 1.199327 CCGCTACTCGAGAAGACAACA 59.801 52.381 21.68 0.00 41.67 3.33
6388 6822 1.467713 CCCGCTACTCGAGAAGACAAC 60.468 57.143 21.68 0.01 41.67 3.32
6389 6823 0.809385 CCCGCTACTCGAGAAGACAA 59.191 55.000 21.68 0.00 41.67 3.18
6457 6919 4.682860 GCATTGAACCAATATAGTGCATGC 59.317 41.667 11.82 11.82 32.35 4.06
6491 7112 2.048127 GCTTCGAGTGCCGGAAGT 60.048 61.111 5.05 0.00 39.14 3.01
6549 7171 6.537301 TGGTCAAACTGTATTCGAATATGGTC 59.463 38.462 20.21 8.58 0.00 4.02
6655 7311 4.095211 TGATGATGATTCCCCAGCAAAAA 58.905 39.130 0.00 0.00 35.97 1.94
6656 7312 3.710724 TGATGATGATTCCCCAGCAAAA 58.289 40.909 0.00 0.00 35.97 2.44
6657 7313 3.385314 TGATGATGATTCCCCAGCAAA 57.615 42.857 0.00 0.00 35.97 3.68
6658 7314 3.117436 TGATGATGATGATTCCCCAGCAA 60.117 43.478 0.00 0.00 35.97 3.91
6659 7315 2.444010 TGATGATGATGATTCCCCAGCA 59.556 45.455 0.00 0.00 36.84 4.41
6662 7318 7.243091 ACAATAATGATGATGATGATTCCCCA 58.757 34.615 0.00 0.00 0.00 4.96
6669 7325 9.955208 GCAAACTTACAATAATGATGATGATGA 57.045 29.630 0.00 0.00 0.00 2.92
6670 7326 9.738832 TGCAAACTTACAATAATGATGATGATG 57.261 29.630 0.00 0.00 0.00 3.07
6672 7328 9.571810 GTTGCAAACTTACAATAATGATGATGA 57.428 29.630 0.00 0.00 45.32 2.92
6779 9521 0.393808 ATTAGATGCGCCCAACGGTT 60.394 50.000 4.18 0.00 43.93 4.44
6780 9522 0.814010 GATTAGATGCGCCCAACGGT 60.814 55.000 4.18 0.00 43.93 4.83
6895 9644 6.884295 CCCTAGTGAAGAATTGGTGAATTGTA 59.116 38.462 0.00 0.00 31.58 2.41
6924 9673 5.463392 TGATTCTGTGTTCTCTTTGTTCTCG 59.537 40.000 0.00 0.00 0.00 4.04
6936 9685 9.387123 GAAGTGTCTTATTTTGATTCTGTGTTC 57.613 33.333 0.00 0.00 0.00 3.18
6949 9698 8.528044 TGGTTACCTTTTGAAGTGTCTTATTT 57.472 30.769 2.07 0.00 0.00 1.40
6953 9702 5.949952 AGTTGGTTACCTTTTGAAGTGTCTT 59.050 36.000 2.07 0.00 0.00 3.01
6968 9717 6.071616 TGGGAGCATTTATGAAAGTTGGTTAC 60.072 38.462 0.00 0.00 0.00 2.50
7060 9809 9.329913 CGAATTCTTTGTAATCGAACAAGAAAT 57.670 29.630 3.52 10.16 40.29 2.17
7075 9824 6.734137 TGTTAAGCAACATCGAATTCTTTGT 58.266 32.000 3.52 4.24 39.75 2.83
7089 9838 5.725362 AGGTGAGACTAGATGTTAAGCAAC 58.275 41.667 0.00 0.00 35.06 4.17
7091 9840 5.265191 AGAGGTGAGACTAGATGTTAAGCA 58.735 41.667 0.00 0.00 0.00 3.91
7092 9841 5.845391 AGAGGTGAGACTAGATGTTAAGC 57.155 43.478 0.00 0.00 0.00 3.09
7096 9845 4.079443 AGGCTAGAGGTGAGACTAGATGTT 60.079 45.833 0.00 0.00 38.53 2.71
7110 9859 4.034510 CGTTGCTAAAATGAAGGCTAGAGG 59.965 45.833 0.00 0.00 0.00 3.69
7113 9862 5.545658 TTCGTTGCTAAAATGAAGGCTAG 57.454 39.130 0.00 0.00 0.00 3.42
7135 9884 7.642082 AGAAAATTGATAGAAGCTTGAGCAT 57.358 32.000 2.10 0.00 45.16 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.