Multiple sequence alignment - TraesCS5A01G137700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G137700 chr5A 100.000 4479 0 0 1 4479 309692733 309688255 0.000000e+00 8272.0
1 TraesCS5A01G137700 chr5A 89.941 169 15 2 4183 4350 320214411 320214244 2.710000e-52 217.0
2 TraesCS5A01G137700 chr5D 92.026 2019 96 32 2170 4178 242623932 242625895 0.000000e+00 2776.0
3 TraesCS5A01G137700 chr5D 90.883 1755 81 29 1 1704 242621747 242623473 0.000000e+00 2281.0
4 TraesCS5A01G137700 chr5D 97.691 433 8 1 1671 2101 242623486 242623918 0.000000e+00 743.0
5 TraesCS5A01G137700 chr5D 92.453 159 11 1 4193 4350 461072760 461072602 4.510000e-55 226.0
6 TraesCS5A01G137700 chr5D 97.656 128 3 0 4349 4476 242625937 242626064 2.100000e-53 220.0
7 TraesCS5A01G137700 chr5D 88.690 168 17 2 4193 4358 484304997 484305164 2.110000e-48 204.0
8 TraesCS5A01G137700 chr5D 100.000 45 0 0 1529 1573 549792138 549792094 2.870000e-12 84.2
9 TraesCS5A01G137700 chr5B 92.382 1969 81 16 1669 3625 255974642 255972731 0.000000e+00 2741.0
10 TraesCS5A01G137700 chr5B 89.853 1764 91 42 1 1704 255976388 255974653 0.000000e+00 2185.0
11 TraesCS5A01G137700 chr5B 89.756 859 33 16 3627 4479 255972648 255971839 0.000000e+00 1048.0
12 TraesCS5A01G137700 chr5B 90.964 166 11 4 4193 4355 665813089 665813253 2.100000e-53 220.0
13 TraesCS5A01G137700 chr4D 92.500 160 11 1 4193 4351 21147735 21147894 1.250000e-55 228.0
14 TraesCS5A01G137700 chr4B 92.994 157 9 2 4195 4350 386744960 386744805 1.250000e-55 228.0
15 TraesCS5A01G137700 chr4A 92.453 159 11 1 4193 4350 150653471 150653313 4.510000e-55 226.0
16 TraesCS5A01G137700 chr3B 92.453 159 11 1 4193 4350 552226410 552226568 4.510000e-55 226.0
17 TraesCS5A01G137700 chr3B 96.000 50 1 1 1522 1571 168684256 168684304 3.710000e-11 80.5
18 TraesCS5A01G137700 chr2D 91.195 159 13 1 4193 4350 572684766 572684608 9.760000e-52 215.0
19 TraesCS5A01G137700 chr7A 96.000 50 1 1 1523 1572 652704809 652704857 3.710000e-11 80.5
20 TraesCS5A01G137700 chrUn 97.826 46 0 1 1526 1571 37289257 37289213 1.340000e-10 78.7
21 TraesCS5A01G137700 chrUn 97.826 46 0 1 1526 1571 37292433 37292389 1.340000e-10 78.7
22 TraesCS5A01G137700 chr3A 97.826 46 0 1 1526 1571 680750757 680750801 1.340000e-10 78.7
23 TraesCS5A01G137700 chr7B 91.071 56 3 2 1520 1574 234058826 234058880 1.730000e-09 75.0
24 TraesCS5A01G137700 chr6D 91.071 56 2 3 1533 1586 201125124 201125070 6.210000e-09 73.1
25 TraesCS5A01G137700 chr7D 84.000 75 7 5 1511 1583 431151239 431151168 2.890000e-07 67.6
26 TraesCS5A01G137700 chr6B 92.500 40 3 0 1584 1623 157599203 157599242 1.740000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G137700 chr5A 309688255 309692733 4478 True 8272.000000 8272 100.000000 1 4479 1 chr5A.!!$R1 4478
1 TraesCS5A01G137700 chr5D 242621747 242626064 4317 False 1505.000000 2776 94.564000 1 4476 4 chr5D.!!$F2 4475
2 TraesCS5A01G137700 chr5B 255971839 255976388 4549 True 1991.333333 2741 90.663667 1 4479 3 chr5B.!!$R1 4478

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
526 543 0.686789 TCAGCAAGCAAGTGCCTAGA 59.313 50.0 0.0 0.0 46.14 2.43 F
1083 1143 0.315251 GAAGGTTCTGCCAAAGTGCC 59.685 55.0 0.0 0.0 40.61 5.01 F
1318 1379 0.514691 CGCTCTTTCACAGCACTTCC 59.485 55.0 0.0 0.0 36.61 3.46 F
2957 3081 0.248907 CGCCGAGTACCACCATACTG 60.249 60.0 0.0 0.0 35.48 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2334 2456 0.604511 CATCTGGCGCATGCTGGATA 60.605 55.0 17.13 0.0 42.25 2.59 R
2861 2985 0.108804 CGCAACCCATGTCGTAGAGT 60.109 55.0 0.00 0.0 36.95 3.24 R
3127 3251 0.257039 CTAGGATGTTGGCAAGGGCT 59.743 55.0 0.00 0.0 40.87 5.19 R
4336 4556 0.108281 GCTTGGTACTCCCTCCGTTC 60.108 60.0 0.00 0.0 0.00 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 3.470888 CCGAGAACCCGGCAGGAT 61.471 66.667 3.68 0.00 43.25 3.24
166 171 3.371917 CCAAACATCCTGCCTCTCCATAA 60.372 47.826 0.00 0.00 0.00 1.90
193 199 1.229359 CCTAGACCCGCTCCCACTA 59.771 63.158 0.00 0.00 0.00 2.74
249 257 1.891616 GAAGACCGGGTCCACTCTC 59.108 63.158 23.21 8.93 32.18 3.20
434 442 1.279238 GCTCGTACTCCGTCGGATC 59.721 63.158 15.81 7.72 37.94 3.36
523 540 1.113788 TTTTCAGCAAGCAAGTGCCT 58.886 45.000 0.00 0.00 46.14 4.75
524 541 1.979855 TTTCAGCAAGCAAGTGCCTA 58.020 45.000 0.00 0.00 46.14 3.93
525 542 1.527034 TTCAGCAAGCAAGTGCCTAG 58.473 50.000 0.00 0.00 46.14 3.02
526 543 0.686789 TCAGCAAGCAAGTGCCTAGA 59.313 50.000 0.00 0.00 46.14 2.43
533 572 5.039333 GCAAGCAAGTGCCTAGATTTATTG 58.961 41.667 0.00 0.00 43.38 1.90
534 573 5.393461 GCAAGCAAGTGCCTAGATTTATTGT 60.393 40.000 0.00 0.00 43.38 2.71
632 683 7.481275 TGCTTCAATTCAAAATTTCACTTCC 57.519 32.000 0.00 0.00 0.00 3.46
640 691 7.841915 TTCAAAATTTCACTTCCAAAGAACC 57.158 32.000 0.00 0.00 0.00 3.62
642 693 7.041107 TCAAAATTTCACTTCCAAAGAACCAG 58.959 34.615 0.00 0.00 0.00 4.00
678 731 1.336332 TGAAGAGTCAGCGTTGCTCTC 60.336 52.381 20.18 16.72 36.40 3.20
710 763 5.743422 GCTCCATACCCTAATCCTCTTTCAC 60.743 48.000 0.00 0.00 0.00 3.18
718 771 3.441500 AATCCTCTTTCACTGGGGAAC 57.558 47.619 0.00 0.00 0.00 3.62
789 842 2.607038 CCCGCGTGAAATCGATATCTGA 60.607 50.000 4.92 0.61 0.00 3.27
838 891 7.936847 TGGTGTGTGATGATAGTAACTCTTTTT 59.063 33.333 0.00 0.00 0.00 1.94
891 944 3.091545 ACCATCCTTCGATGTTTGCAAT 58.908 40.909 0.00 0.00 43.87 3.56
943 996 2.099756 GGCACTGCAGACAAAGAAACTT 59.900 45.455 23.35 0.00 0.00 2.66
1083 1143 0.315251 GAAGGTTCTGCCAAAGTGCC 59.685 55.000 0.00 0.00 40.61 5.01
1164 1224 6.127814 ACACCAAATGCTTCATCTCATACTTG 60.128 38.462 0.00 0.00 0.00 3.16
1165 1225 5.163581 ACCAAATGCTTCATCTCATACTTGC 60.164 40.000 0.00 0.00 0.00 4.01
1174 1235 7.806960 GCTTCATCTCATACTTGCCATTTTATC 59.193 37.037 0.00 0.00 0.00 1.75
1318 1379 0.514691 CGCTCTTTCACAGCACTTCC 59.485 55.000 0.00 0.00 36.61 3.46
1368 1429 1.078848 ACTCGTCCTGCAATGGAGC 60.079 57.895 0.00 0.00 36.69 4.70
1464 1525 9.112725 GCATTCAATTTTGCTTCCCTATTTTAT 57.887 29.630 0.00 0.00 35.95 1.40
1531 1592 3.406764 ACAGAAGCAAGGAAGTGACATC 58.593 45.455 0.00 0.00 0.00 3.06
1534 1595 4.629200 CAGAAGCAAGGAAGTGACATCTAC 59.371 45.833 0.00 0.00 0.00 2.59
1535 1596 4.530161 AGAAGCAAGGAAGTGACATCTACT 59.470 41.667 0.00 0.00 0.00 2.57
1536 1597 4.464069 AGCAAGGAAGTGACATCTACTC 57.536 45.455 0.00 0.00 0.00 2.59
1537 1598 3.196685 AGCAAGGAAGTGACATCTACTCC 59.803 47.826 0.00 0.00 0.00 3.85
1538 1599 3.680196 GCAAGGAAGTGACATCTACTCCC 60.680 52.174 0.00 0.00 0.00 4.30
1540 1601 3.637769 AGGAAGTGACATCTACTCCCTC 58.362 50.000 0.00 0.00 0.00 4.30
1541 1602 2.696187 GGAAGTGACATCTACTCCCTCC 59.304 54.545 0.00 0.00 0.00 4.30
1543 1604 1.285373 AGTGACATCTACTCCCTCCGT 59.715 52.381 0.00 0.00 0.00 4.69
1545 1606 2.099427 GTGACATCTACTCCCTCCGTTC 59.901 54.545 0.00 0.00 0.00 3.95
1547 1608 1.006758 ACATCTACTCCCTCCGTTCCA 59.993 52.381 0.00 0.00 0.00 3.53
1548 1609 2.108168 CATCTACTCCCTCCGTTCCAA 58.892 52.381 0.00 0.00 0.00 3.53
1549 1610 2.314071 TCTACTCCCTCCGTTCCAAA 57.686 50.000 0.00 0.00 0.00 3.28
1550 1611 2.612000 TCTACTCCCTCCGTTCCAAAA 58.388 47.619 0.00 0.00 0.00 2.44
1551 1612 3.178865 TCTACTCCCTCCGTTCCAAAAT 58.821 45.455 0.00 0.00 0.00 1.82
1552 1613 4.355549 TCTACTCCCTCCGTTCCAAAATA 58.644 43.478 0.00 0.00 0.00 1.40
1553 1614 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
1554 1615 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
1556 1617 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
1557 1618 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
1559 1620 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
1560 1621 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
1561 1622 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
1562 1623 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
1563 1624 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
1564 1625 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
1569 1630 9.793259 TTCCAAAATAGATGACTCAACTTTAGT 57.207 29.630 0.00 0.00 0.00 2.24
1597 1668 7.104290 ACCCAACTAGCTTTTGTCTATCTTAC 58.896 38.462 0.00 0.00 0.00 2.34
1639 1710 4.913784 TCCCTAGTTTCGTGGCTATTTTT 58.086 39.130 0.00 0.00 0.00 1.94
2074 2193 6.443934 TGCACAGTAGTTAGCTTTTTGAAA 57.556 33.333 0.00 0.00 0.00 2.69
2102 2221 2.066340 CCTGCTGGTGGAAGGTACA 58.934 57.895 0.51 0.00 35.96 2.90
2219 2341 8.981647 CCATTTAACTTCCATTTTTCTCTTGTG 58.018 33.333 0.00 0.00 0.00 3.33
2346 2468 1.600957 CTTGAAGGTATCCAGCATGCG 59.399 52.381 13.01 7.31 31.97 4.73
2416 2538 6.150976 CCCATTTCTGTAGACTTTTGTGCATA 59.849 38.462 0.00 0.00 0.00 3.14
2417 2539 7.246311 CCATTTCTGTAGACTTTTGTGCATAG 58.754 38.462 0.00 0.00 0.00 2.23
2452 2574 2.983229 TCAAATCCTTCTCAGAGCAGC 58.017 47.619 0.00 0.00 0.00 5.25
2506 2630 5.404946 AGTTGCAATGCACTTGACATATTC 58.595 37.500 7.72 0.00 38.71 1.75
2624 2748 4.486090 TCTCTAAGTCGAACATCAACTGC 58.514 43.478 0.00 0.00 0.00 4.40
2675 2799 3.076621 TGATGTTACTTCTGCTGCCAAG 58.923 45.455 0.00 1.89 0.00 3.61
2727 2851 2.030805 GCCTAAGTCCAAAGCAAGTGTG 60.031 50.000 0.00 0.00 0.00 3.82
2734 2858 2.948979 TCCAAAGCAAGTGTGAACGAAT 59.051 40.909 0.00 0.00 0.00 3.34
2764 2888 6.808704 TGATTACTGAATCTGTTCTGAAGTCG 59.191 38.462 0.00 0.00 41.87 4.18
2840 2964 0.524816 GCGCTGTGCATCCATCAAAG 60.525 55.000 8.57 0.00 45.45 2.77
2864 2988 3.427161 GCATATGTTGCCAAGGAACTC 57.573 47.619 4.29 0.00 46.15 3.01
2933 3057 1.746760 GTACGCCAGGTACGTTATCG 58.253 55.000 0.00 0.00 41.93 2.92
2941 3065 0.505655 GGTACGTTATCGCATTCGCC 59.494 55.000 0.00 0.00 41.18 5.54
2946 3070 1.762419 GTTATCGCATTCGCCGAGTA 58.238 50.000 0.00 0.00 38.20 2.59
2950 3074 2.514013 CGCATTCGCCGAGTACCAC 61.514 63.158 0.00 0.00 33.11 4.16
2951 3075 2.171725 GCATTCGCCGAGTACCACC 61.172 63.158 0.00 0.00 0.00 4.61
2952 3076 1.216977 CATTCGCCGAGTACCACCA 59.783 57.895 0.00 0.00 0.00 4.17
2955 3079 0.457035 TTCGCCGAGTACCACCATAC 59.543 55.000 0.00 0.00 0.00 2.39
2956 3080 0.394762 TCGCCGAGTACCACCATACT 60.395 55.000 0.00 0.00 38.13 2.12
2957 3081 0.248907 CGCCGAGTACCACCATACTG 60.249 60.000 0.00 0.00 35.48 2.74
2958 3082 0.822164 GCCGAGTACCACCATACTGT 59.178 55.000 0.00 0.00 35.48 3.55
2959 3083 1.470979 GCCGAGTACCACCATACTGTG 60.471 57.143 0.00 0.00 35.48 3.66
2960 3084 2.097036 CCGAGTACCACCATACTGTGA 58.903 52.381 0.00 0.00 38.55 3.58
2961 3085 2.693591 CCGAGTACCACCATACTGTGAT 59.306 50.000 0.00 0.00 38.55 3.06
2962 3086 3.490933 CCGAGTACCACCATACTGTGATG 60.491 52.174 0.00 0.00 38.55 3.07
2963 3087 3.458189 GAGTACCACCATACTGTGATGC 58.542 50.000 0.00 0.00 38.55 3.91
2964 3088 2.837591 AGTACCACCATACTGTGATGCA 59.162 45.455 0.00 0.00 38.55 3.96
3021 3145 7.503521 TCAGATTTTGCACACTGTTAACATA 57.496 32.000 9.13 0.00 0.00 2.29
3022 3146 7.359595 TCAGATTTTGCACACTGTTAACATAC 58.640 34.615 9.13 0.00 0.00 2.39
3023 3147 7.012799 TCAGATTTTGCACACTGTTAACATACA 59.987 33.333 9.13 0.76 0.00 2.29
3024 3148 7.809331 CAGATTTTGCACACTGTTAACATACAT 59.191 33.333 9.13 0.00 0.00 2.29
3025 3149 7.809331 AGATTTTGCACACTGTTAACATACATG 59.191 33.333 9.13 8.05 0.00 3.21
3027 3151 3.755905 TGCACACTGTTAACATACATGGG 59.244 43.478 9.13 7.82 0.00 4.00
3028 3152 3.427503 GCACACTGTTAACATACATGGGC 60.428 47.826 9.13 13.57 32.78 5.36
3029 3153 4.009675 CACACTGTTAACATACATGGGCT 58.990 43.478 9.13 0.00 0.00 5.19
3030 3154 4.009675 ACACTGTTAACATACATGGGCTG 58.990 43.478 9.13 0.00 0.00 4.85
3031 3155 4.009675 CACTGTTAACATACATGGGCTGT 58.990 43.478 9.13 0.00 42.13 4.40
3121 3245 4.617959 CCGTTCACTTCCACGATACATAT 58.382 43.478 0.00 0.00 38.76 1.78
3127 3251 3.135712 ACTTCCACGATACATATGGCCAA 59.864 43.478 10.96 0.00 33.20 4.52
3195 3322 0.784778 CTGAAAACAGCGAGTCGGTC 59.215 55.000 15.48 3.74 34.62 4.79
3202 3329 3.482783 GCGAGTCGGTCAGCAAGC 61.483 66.667 15.52 0.00 0.00 4.01
3214 3341 0.313043 CAGCAAGCCTTGTTGTCCTG 59.687 55.000 12.58 4.18 37.15 3.86
3217 3344 1.972872 CAAGCCTTGTTGTCCTGACT 58.027 50.000 0.00 0.00 0.00 3.41
3227 3354 2.234300 TGTCCTGACTCGGTTTTCAC 57.766 50.000 0.00 0.00 0.00 3.18
3228 3355 1.483004 TGTCCTGACTCGGTTTTCACA 59.517 47.619 0.00 0.00 0.00 3.58
3301 3428 4.910585 GGAGGGTGCCCATACGCG 62.911 72.222 3.53 3.53 38.41 6.01
3349 3476 0.685097 AGGACGTGGTGTACATGCTT 59.315 50.000 0.00 0.00 39.81 3.91
3388 3515 2.049433 AACGTCGACCTCGGCAAG 60.049 61.111 10.58 0.00 45.47 4.01
3424 3551 2.005451 GACTACATCTGCAAGCACCTG 58.995 52.381 0.00 0.00 0.00 4.00
3454 3581 0.535780 CAGGCTCCAAGACTGCAACA 60.536 55.000 0.00 0.00 45.62 3.33
3500 3631 4.698201 TTGTCATACTGGAACTCCACAA 57.302 40.909 0.00 0.00 42.01 3.33
3501 3632 4.271696 TGTCATACTGGAACTCCACAAG 57.728 45.455 0.00 0.00 42.01 3.16
3502 3633 3.007940 TGTCATACTGGAACTCCACAAGG 59.992 47.826 0.00 0.00 42.01 3.61
3503 3634 2.571653 TCATACTGGAACTCCACAAGGG 59.428 50.000 0.00 0.00 42.01 3.95
3504 3635 1.358152 TACTGGAACTCCACAAGGGG 58.642 55.000 0.00 0.00 42.01 4.79
3513 3644 1.203994 CTCCACAAGGGGTAGTACACG 59.796 57.143 2.06 0.00 37.22 4.49
3514 3645 0.971386 CCACAAGGGGTAGTACACGT 59.029 55.000 2.06 0.00 0.00 4.49
3515 3646 1.067354 CCACAAGGGGTAGTACACGTC 60.067 57.143 2.06 0.00 0.00 4.34
3516 3647 1.614903 CACAAGGGGTAGTACACGTCA 59.385 52.381 2.06 0.00 0.00 4.35
3572 3703 4.170256 CCATTTTGGTTGTTGTATACCGC 58.830 43.478 0.00 0.00 37.23 5.68
3585 3716 6.019398 TGTTGTATACCGCATCAATTTACTCG 60.019 38.462 0.00 0.00 0.00 4.18
3586 3717 4.986034 TGTATACCGCATCAATTTACTCGG 59.014 41.667 0.00 0.00 42.24 4.63
3598 3729 2.825861 TTACTCGGGTCAGGTGAAAC 57.174 50.000 0.00 0.00 0.00 2.78
3605 3736 3.517901 TCGGGTCAGGTGAAACTTATCAT 59.482 43.478 0.00 0.00 36.74 2.45
3609 3740 5.710099 GGGTCAGGTGAAACTTATCATGAAA 59.290 40.000 0.00 0.00 36.74 2.69
3610 3741 6.349363 GGGTCAGGTGAAACTTATCATGAAAC 60.349 42.308 0.00 0.00 36.74 2.78
3628 3759 9.889128 TCATGAAACATTGATATGTACTCTCAA 57.111 29.630 0.00 7.47 44.14 3.02
3683 3898 2.427453 TCAGAGCCCTCTTCGTCATAAC 59.573 50.000 0.00 0.00 37.98 1.89
3684 3899 2.166459 CAGAGCCCTCTTCGTCATAACA 59.834 50.000 0.00 0.00 37.98 2.41
3685 3900 2.428890 AGAGCCCTCTTCGTCATAACAG 59.571 50.000 0.00 0.00 36.31 3.16
3686 3901 2.427453 GAGCCCTCTTCGTCATAACAGA 59.573 50.000 0.00 0.00 0.00 3.41
3687 3902 2.832129 AGCCCTCTTCGTCATAACAGAA 59.168 45.455 0.00 0.00 0.00 3.02
3727 3942 7.223584 TCACAGAGAAGTGTATGAAAATGGAA 58.776 34.615 0.00 0.00 40.37 3.53
3730 3945 9.082313 ACAGAGAAGTGTATGAAAATGGAAAAT 57.918 29.630 0.00 0.00 0.00 1.82
3777 3994 6.429624 TGCTAATTTTCGTATTGCATAGCTG 58.570 36.000 0.00 0.00 0.00 4.24
3783 4000 7.561237 TTTTCGTATTGCATAGCTGAAAAAC 57.439 32.000 0.00 0.00 32.71 2.43
3795 4012 2.597272 GCTGAAAAACGTGCAATGCAAC 60.597 45.455 10.44 3.51 41.47 4.17
3798 4015 1.285578 AAAACGTGCAATGCAACCAC 58.714 45.000 10.44 0.00 41.47 4.16
3866 4083 9.982291 GTAGCAGATTTTACATGTATCGAAAAA 57.018 29.630 6.36 6.18 0.00 1.94
3868 4085 8.730680 AGCAGATTTTACATGTATCGAAAAAGT 58.269 29.630 6.36 0.00 0.00 2.66
3881 4098 8.308931 TGTATCGAAAAAGTGTACATCTAACCT 58.691 33.333 0.00 0.00 0.00 3.50
3934 4151 0.320073 GCAGCCAAGCATTGCTTCAA 60.320 50.000 20.75 0.00 46.77 2.69
3992 4209 4.020218 CAGAGTTGGATTAGTTCACCCTCA 60.020 45.833 0.00 0.00 0.00 3.86
4086 4306 2.993471 GCAACATGAACCTGCGGGG 61.993 63.158 18.00 5.11 41.89 5.73
4113 4333 3.547054 ACACAACTCGTAAGGACCAAA 57.453 42.857 0.00 0.00 38.47 3.28
4141 4361 6.425114 CCTTCCTGGACGATAAATAGTGATTG 59.575 42.308 1.08 0.00 38.35 2.67
4180 4400 4.730487 GCTCAATGCCAGTGAGGT 57.270 55.556 22.17 0.00 42.36 3.85
4198 4418 4.140994 TGAGGTCGGTATTAGAATCCCTCT 60.141 45.833 0.00 0.00 38.42 3.69
4214 4434 9.785982 AGAATCCCTCTGTTTCTAAATATAAGC 57.214 33.333 0.00 0.00 32.45 3.09
4223 4443 9.952188 CTGTTTCTAAATATAAGCCCTTTTAGC 57.048 33.333 0.00 0.00 33.63 3.09
4234 4454 6.715347 AAGCCCTTTTAGCGATTTCAATAT 57.285 33.333 0.00 0.00 34.64 1.28
4240 4460 8.836413 CCCTTTTAGCGATTTCAATATGAACTA 58.164 33.333 0.00 0.00 35.89 2.24
4241 4461 9.651718 CCTTTTAGCGATTTCAATATGAACTAC 57.348 33.333 0.00 0.00 35.89 2.73
4246 4466 8.007821 AGCGATTTCAATATGAACTACATACG 57.992 34.615 0.00 0.00 43.12 3.06
4247 4467 7.865889 AGCGATTTCAATATGAACTACATACGA 59.134 33.333 0.00 0.00 43.12 3.43
4248 4468 8.648097 GCGATTTCAATATGAACTACATACGAT 58.352 33.333 0.00 0.00 43.12 3.73
4249 4469 9.943465 CGATTTCAATATGAACTACATACGATG 57.057 33.333 0.00 0.00 43.12 3.84
4293 4513 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
4294 4514 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
4295 4515 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
4296 4516 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
4297 4517 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
4298 4518 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
4299 4519 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
4300 4520 4.868171 TCACTCATTTTGCTCCGTATGTAC 59.132 41.667 0.00 0.00 0.00 2.90
4301 4521 4.870426 CACTCATTTTGCTCCGTATGTACT 59.130 41.667 0.00 0.00 0.00 2.73
4302 4522 5.005779 CACTCATTTTGCTCCGTATGTACTC 59.994 44.000 0.00 0.00 0.00 2.59
4303 4523 4.439057 TCATTTTGCTCCGTATGTACTCC 58.561 43.478 0.00 0.00 0.00 3.85
4304 4524 4.161565 TCATTTTGCTCCGTATGTACTCCT 59.838 41.667 0.00 0.00 0.00 3.69
4309 4529 5.196341 TGCTCCGTATGTACTCCTTATTG 57.804 43.478 0.00 0.00 0.00 1.90
4340 4560 8.897872 TCTAAAAGGGCTTATATTTAGGAACG 57.102 34.615 0.00 0.00 36.48 3.95
4341 4561 6.954487 AAAAGGGCTTATATTTAGGAACGG 57.046 37.500 0.00 0.00 0.00 4.44
4342 4562 5.899631 AAGGGCTTATATTTAGGAACGGA 57.100 39.130 0.00 0.00 0.00 4.69
4343 4563 5.485209 AGGGCTTATATTTAGGAACGGAG 57.515 43.478 0.00 0.00 0.00 4.63
4344 4564 4.286291 AGGGCTTATATTTAGGAACGGAGG 59.714 45.833 0.00 0.00 0.00 4.30
4345 4565 4.565028 GGGCTTATATTTAGGAACGGAGGG 60.565 50.000 0.00 0.00 0.00 4.30
4346 4566 4.285260 GGCTTATATTTAGGAACGGAGGGA 59.715 45.833 0.00 0.00 0.00 4.20
4347 4567 5.480205 GCTTATATTTAGGAACGGAGGGAG 58.520 45.833 0.00 0.00 0.00 4.30
4360 4580 2.483188 CGGAGGGAGTACCAAGCAATAC 60.483 54.545 0.00 0.00 43.89 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 2.582498 GTTCTCGGATCCGCCACG 60.582 66.667 29.62 16.34 39.59 4.94
284 292 3.645268 CTCCGCCAAGGGAAAGGGG 62.645 68.421 0.00 0.00 41.52 4.79
434 442 1.193203 CGATGGATGAATTCGAAGCCG 59.807 52.381 3.35 0.00 34.92 5.52
520 537 4.638304 TCCGCCTTACAATAAATCTAGGC 58.362 43.478 0.00 0.00 43.60 3.93
521 538 6.097915 TCTCCGCCTTACAATAAATCTAGG 57.902 41.667 0.00 0.00 0.00 3.02
523 540 8.429641 AGATTTCTCCGCCTTACAATAAATCTA 58.570 33.333 0.00 0.00 39.43 1.98
524 541 7.227512 CAGATTTCTCCGCCTTACAATAAATCT 59.772 37.037 0.00 0.00 40.97 2.40
525 542 7.355778 CAGATTTCTCCGCCTTACAATAAATC 58.644 38.462 0.00 0.00 34.07 2.17
526 543 6.263168 CCAGATTTCTCCGCCTTACAATAAAT 59.737 38.462 0.00 0.00 0.00 1.40
533 572 2.981859 TCCAGATTTCTCCGCCTTAC 57.018 50.000 0.00 0.00 0.00 2.34
534 573 3.454447 TCATTCCAGATTTCTCCGCCTTA 59.546 43.478 0.00 0.00 0.00 2.69
678 731 1.153086 GGGTATGGAGCTGTGGCAG 60.153 63.158 0.00 0.00 41.70 4.85
718 771 3.252701 GTGCTATCATTTCATCAGCTGGG 59.747 47.826 15.13 6.93 33.38 4.45
774 827 6.642540 CGGATGTTTCTCAGATATCGATTTCA 59.357 38.462 16.66 0.00 0.00 2.69
780 833 2.989840 GCCGGATGTTTCTCAGATATCG 59.010 50.000 5.05 0.00 0.00 2.92
838 891 1.133199 AGCCCACATCCCTCAAAAACA 60.133 47.619 0.00 0.00 0.00 2.83
891 944 7.626240 GCATCTGAAACATCGAAGGATACAAAA 60.626 37.037 0.00 0.00 41.41 2.44
943 996 3.364460 AACAATGCTGGCATGTACCTA 57.636 42.857 8.91 0.00 36.68 3.08
1026 1086 1.607467 CTTTGGCAGGTCCCCAAGG 60.607 63.158 0.51 0.00 42.80 3.61
1083 1143 2.352034 GTCATCAGCTGTTGATCTGCAG 59.648 50.000 25.98 7.63 44.76 4.41
1164 1224 7.603963 AAAATAAAACACCGGATAAAATGGC 57.396 32.000 9.46 0.00 0.00 4.40
1165 1225 9.209175 TGAAAAATAAAACACCGGATAAAATGG 57.791 29.630 9.46 0.00 0.00 3.16
1531 1592 3.629142 ATTTTGGAACGGAGGGAGTAG 57.371 47.619 0.00 0.00 0.00 2.57
1534 1595 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
1535 1596 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
1536 1597 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
1537 1598 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
1538 1599 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
1540 1601 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
1541 1602 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
1543 1604 9.793259 ACTAAAGTTGAGTCATCTATTTTGGAA 57.207 29.630 4.14 0.00 28.91 3.53
1550 1611 9.656323 TGGGTATACTAAAGTTGAGTCATCTAT 57.344 33.333 4.14 0.00 0.00 1.98
1551 1612 9.483489 TTGGGTATACTAAAGTTGAGTCATCTA 57.517 33.333 4.14 0.00 0.00 1.98
1552 1613 7.973048 TGGGTATACTAAAGTTGAGTCATCT 57.027 36.000 0.00 0.00 0.00 2.90
1553 1614 8.258708 AGTTGGGTATACTAAAGTTGAGTCATC 58.741 37.037 0.00 0.00 0.00 2.92
1554 1615 8.147244 AGTTGGGTATACTAAAGTTGAGTCAT 57.853 34.615 0.00 0.00 0.00 3.06
1556 1617 7.705752 GCTAGTTGGGTATACTAAAGTTGAGTC 59.294 40.741 0.00 0.00 0.00 3.36
1557 1618 7.399478 AGCTAGTTGGGTATACTAAAGTTGAGT 59.601 37.037 2.25 0.00 0.00 3.41
1559 1620 7.729124 AGCTAGTTGGGTATACTAAAGTTGA 57.271 36.000 2.25 0.00 0.00 3.18
1560 1621 8.788325 AAAGCTAGTTGGGTATACTAAAGTTG 57.212 34.615 2.25 3.60 0.00 3.16
1561 1622 9.227777 CAAAAGCTAGTTGGGTATACTAAAGTT 57.772 33.333 2.25 0.00 0.00 2.66
1562 1623 8.380867 ACAAAAGCTAGTTGGGTATACTAAAGT 58.619 33.333 13.12 3.68 0.00 2.66
1563 1624 8.788325 ACAAAAGCTAGTTGGGTATACTAAAG 57.212 34.615 13.12 0.00 0.00 1.85
1564 1625 8.599792 AGACAAAAGCTAGTTGGGTATACTAAA 58.400 33.333 13.12 0.00 0.00 1.85
1568 1629 8.422566 AGATAGACAAAAGCTAGTTGGGTATAC 58.577 37.037 13.12 0.00 0.00 1.47
1569 1630 8.548880 AGATAGACAAAAGCTAGTTGGGTATA 57.451 34.615 13.12 0.00 0.00 1.47
1573 1644 7.278868 CAGTAAGATAGACAAAAGCTAGTTGGG 59.721 40.741 13.12 0.00 0.00 4.12
1597 1668 7.284919 AGGGATAAGTTGGTTAAACAAACAG 57.715 36.000 7.69 0.00 41.61 3.16
1639 1710 6.607689 CGCTTATTTTGTAATCTGTTGTGGA 58.392 36.000 0.00 0.00 0.00 4.02
2334 2456 0.604511 CATCTGGCGCATGCTGGATA 60.605 55.000 17.13 0.00 42.25 2.59
2346 2468 1.675641 AGGAAACCGCACATCTGGC 60.676 57.895 0.00 0.00 0.00 4.85
2426 2548 4.748892 CTCTGAGAAGGATTTGAAGCGTA 58.251 43.478 0.00 0.00 0.00 4.42
2452 2574 4.508461 TGTCATTTGCAGTGATTTGAGG 57.492 40.909 7.08 0.00 0.00 3.86
2582 2706 1.146930 GGATTCAGAGGCGGATGCA 59.853 57.895 0.00 0.00 45.35 3.96
2624 2748 1.089920 CAAGGCTTTCCTCGATGGTG 58.910 55.000 0.00 0.00 43.40 4.17
2727 2851 8.272176 CAGATTCAGTAATCAAGCTATTCGTTC 58.728 37.037 0.00 0.00 43.44 3.95
2734 2858 7.840931 TCAGAACAGATTCAGTAATCAAGCTA 58.159 34.615 0.00 0.00 43.44 3.32
2764 2888 3.181461 CCTACCACAATCAGAGGATGGAC 60.181 52.174 4.05 0.00 32.92 4.02
2825 2949 2.290832 TGCTACCTTTGATGGATGCACA 60.291 45.455 0.00 0.00 35.45 4.57
2861 2985 0.108804 CGCAACCCATGTCGTAGAGT 60.109 55.000 0.00 0.00 36.95 3.24
2864 2988 2.798501 CGCGCAACCCATGTCGTAG 61.799 63.158 8.75 0.00 33.17 3.51
2933 3057 2.171725 GGTGGTACTCGGCGAATGC 61.172 63.158 12.13 3.95 41.71 3.56
2941 3065 3.706698 CATCACAGTATGGTGGTACTCG 58.293 50.000 0.00 0.00 43.62 4.18
2946 3070 2.408271 CTGCATCACAGTATGGTGGT 57.592 50.000 0.00 0.00 43.62 4.16
2956 3080 2.749280 ATCGACAGTTCTGCATCACA 57.251 45.000 0.00 0.00 0.00 3.58
2957 3081 3.681897 AGAAATCGACAGTTCTGCATCAC 59.318 43.478 6.96 0.00 32.84 3.06
2958 3082 3.930336 AGAAATCGACAGTTCTGCATCA 58.070 40.909 6.96 0.00 32.84 3.07
2959 3083 4.389992 TCAAGAAATCGACAGTTCTGCATC 59.610 41.667 8.22 0.00 34.33 3.91
2960 3084 4.318332 TCAAGAAATCGACAGTTCTGCAT 58.682 39.130 8.22 0.00 34.33 3.96
2961 3085 3.727726 TCAAGAAATCGACAGTTCTGCA 58.272 40.909 8.22 0.00 34.33 4.41
2962 3086 3.124297 CCTCAAGAAATCGACAGTTCTGC 59.876 47.826 8.22 0.00 34.33 4.26
2963 3087 3.124297 GCCTCAAGAAATCGACAGTTCTG 59.876 47.826 8.22 0.00 34.33 3.02
2964 3088 3.007398 AGCCTCAAGAAATCGACAGTTCT 59.993 43.478 0.00 0.00 35.59 3.01
2965 3089 3.330267 AGCCTCAAGAAATCGACAGTTC 58.670 45.455 0.00 0.00 0.00 3.01
3021 3145 2.102925 CCTGAAACAAAACAGCCCATGT 59.897 45.455 0.00 0.00 46.97 3.21
3022 3146 2.758009 CCTGAAACAAAACAGCCCATG 58.242 47.619 0.00 0.00 33.40 3.66
3023 3147 1.070601 GCCTGAAACAAAACAGCCCAT 59.929 47.619 0.00 0.00 33.40 4.00
3024 3148 0.463620 GCCTGAAACAAAACAGCCCA 59.536 50.000 0.00 0.00 33.40 5.36
3025 3149 0.463620 TGCCTGAAACAAAACAGCCC 59.536 50.000 0.00 0.00 33.40 5.19
3027 3151 1.538849 CCCTGCCTGAAACAAAACAGC 60.539 52.381 0.00 0.00 33.40 4.40
3028 3152 1.756538 ACCCTGCCTGAAACAAAACAG 59.243 47.619 0.00 0.00 0.00 3.16
3029 3153 1.859302 ACCCTGCCTGAAACAAAACA 58.141 45.000 0.00 0.00 0.00 2.83
3030 3154 2.956333 ACTACCCTGCCTGAAACAAAAC 59.044 45.455 0.00 0.00 0.00 2.43
3031 3155 3.306472 ACTACCCTGCCTGAAACAAAA 57.694 42.857 0.00 0.00 0.00 2.44
3127 3251 0.257039 CTAGGATGTTGGCAAGGGCT 59.743 55.000 0.00 0.00 40.87 5.19
3185 3312 3.482783 GCTTGCTGACCGACTCGC 61.483 66.667 0.00 0.00 0.00 5.03
3192 3319 0.312102 GACAACAAGGCTTGCTGACC 59.688 55.000 31.16 19.82 31.45 4.02
3195 3322 0.313043 CAGGACAACAAGGCTTGCTG 59.687 55.000 26.45 25.59 33.14 4.41
3202 3329 0.393077 ACCGAGTCAGGACAACAAGG 59.607 55.000 7.83 0.62 34.73 3.61
3214 3341 3.042887 GCAACATTGTGAAAACCGAGTC 58.957 45.455 0.00 0.00 0.00 3.36
3217 3344 1.751351 TGGCAACATTGTGAAAACCGA 59.249 42.857 0.00 0.00 46.17 4.69
3349 3476 1.457643 CTCTATCCCCAGGCCGTGA 60.458 63.158 0.00 0.00 0.00 4.35
3388 3515 4.819761 TCGCCAGCGTCCATGAGC 62.820 66.667 12.32 0.00 40.74 4.26
3430 3557 2.266055 GTCTTGGAGCCTGACGGG 59.734 66.667 0.00 0.00 38.36 5.28
3454 3581 1.237285 CCGTTAGCCTGCACAAAGCT 61.237 55.000 1.89 1.89 45.94 3.74
3500 3631 1.206371 GCAATGACGTGTACTACCCCT 59.794 52.381 0.00 0.00 0.00 4.79
3501 3632 1.206371 AGCAATGACGTGTACTACCCC 59.794 52.381 0.00 0.00 0.00 4.95
3502 3633 2.268298 CAGCAATGACGTGTACTACCC 58.732 52.381 0.00 0.00 0.00 3.69
3503 3634 2.921754 GACAGCAATGACGTGTACTACC 59.078 50.000 0.00 0.00 0.00 3.18
3504 3635 2.921754 GGACAGCAATGACGTGTACTAC 59.078 50.000 0.00 0.00 0.00 2.73
3505 3636 2.414957 CGGACAGCAATGACGTGTACTA 60.415 50.000 0.00 0.00 0.00 1.82
3506 3637 1.668919 CGGACAGCAATGACGTGTACT 60.669 52.381 0.00 0.00 0.00 2.73
3507 3638 0.713883 CGGACAGCAATGACGTGTAC 59.286 55.000 0.00 0.00 0.00 2.90
3508 3639 0.315886 ACGGACAGCAATGACGTGTA 59.684 50.000 0.00 0.00 36.32 2.90
3509 3640 0.944311 GACGGACAGCAATGACGTGT 60.944 55.000 0.00 0.00 37.96 4.49
3510 3641 0.667487 AGACGGACAGCAATGACGTG 60.667 55.000 0.00 0.00 37.96 4.49
3511 3642 0.885879 TAGACGGACAGCAATGACGT 59.114 50.000 0.00 0.00 40.85 4.34
3512 3643 1.550065 CTAGACGGACAGCAATGACG 58.450 55.000 0.00 0.00 0.00 4.35
3513 3644 1.281899 GCTAGACGGACAGCAATGAC 58.718 55.000 0.00 0.00 37.73 3.06
3514 3645 0.894835 TGCTAGACGGACAGCAATGA 59.105 50.000 4.83 0.00 44.49 2.57
3515 3646 3.441244 TGCTAGACGGACAGCAATG 57.559 52.632 4.83 0.00 44.49 2.82
3572 3703 3.623060 CACCTGACCCGAGTAAATTGATG 59.377 47.826 0.00 0.00 0.00 3.07
3585 3716 4.843728 TCATGATAAGTTTCACCTGACCC 58.156 43.478 0.00 0.00 0.00 4.46
3586 3717 6.206634 TGTTTCATGATAAGTTTCACCTGACC 59.793 38.462 0.00 0.00 0.00 4.02
3627 3758 9.553064 GGTCATATGAGAACTGAGATACAAATT 57.447 33.333 5.42 0.00 0.00 1.82
3628 3759 8.932610 AGGTCATATGAGAACTGAGATACAAAT 58.067 33.333 5.42 0.00 33.41 2.32
3629 3760 8.311395 AGGTCATATGAGAACTGAGATACAAA 57.689 34.615 5.42 0.00 33.41 2.83
3630 3761 7.904558 AGGTCATATGAGAACTGAGATACAA 57.095 36.000 5.42 0.00 33.41 2.41
3632 3763 7.946207 TCAAGGTCATATGAGAACTGAGATAC 58.054 38.462 5.42 0.00 35.29 2.24
3633 3764 8.539117 TTCAAGGTCATATGAGAACTGAGATA 57.461 34.615 5.42 0.00 35.29 1.98
3634 3765 7.429374 TTCAAGGTCATATGAGAACTGAGAT 57.571 36.000 5.42 0.00 35.29 2.75
3635 3766 6.857437 TTCAAGGTCATATGAGAACTGAGA 57.143 37.500 5.42 4.86 35.29 3.27
3683 3898 5.162000 GTGAGGTCACAACTTTCTTTCTG 57.838 43.478 5.21 0.00 45.75 3.02
3777 3994 1.929836 TGGTTGCATTGCACGTTTTTC 59.070 42.857 11.66 0.00 38.71 2.29
3783 4000 0.854062 CAAAGTGGTTGCATTGCACG 59.146 50.000 11.66 0.00 38.71 5.34
3795 4012 5.990996 ACACTTGAAATTTATGGCAAAGTGG 59.009 36.000 21.61 9.39 0.00 4.00
3798 4015 5.106987 GGCACACTTGAAATTTATGGCAAAG 60.107 40.000 0.00 0.00 0.00 2.77
3866 4083 6.016192 CCATGACGATAGGTTAGATGTACACT 60.016 42.308 0.00 0.13 43.77 3.55
3867 4084 6.150318 CCATGACGATAGGTTAGATGTACAC 58.850 44.000 0.00 0.00 43.77 2.90
3868 4085 5.831525 ACCATGACGATAGGTTAGATGTACA 59.168 40.000 0.00 0.00 43.77 2.90
3871 4088 5.871396 AACCATGACGATAGGTTAGATGT 57.129 39.130 0.00 0.00 43.45 3.06
3992 4209 3.247162 AGAGAGAAGAGAGGCCAAGTTT 58.753 45.455 5.01 0.00 0.00 2.66
4092 4312 3.547054 TTGGTCCTTACGAGTTGTGTT 57.453 42.857 0.00 0.00 0.00 3.32
4093 4313 3.118519 ACTTTGGTCCTTACGAGTTGTGT 60.119 43.478 0.00 0.00 0.00 3.72
4141 4361 1.409064 TCGAGTCCCACATGCTATCAC 59.591 52.381 0.00 0.00 0.00 3.06
4180 4400 5.897824 AGAAACAGAGGGATTCTAATACCGA 59.102 40.000 0.00 0.00 44.60 4.69
4198 4418 8.617809 CGCTAAAAGGGCTTATATTTAGAAACA 58.382 33.333 7.99 0.00 37.48 2.83
4214 4434 7.707104 AGTTCATATTGAAATCGCTAAAAGGG 58.293 34.615 0.00 0.00 38.22 3.95
4223 4443 9.943465 CATCGTATGTAGTTCATATTGAAATCG 57.057 33.333 0.00 0.00 38.22 3.34
4275 4495 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
4282 4502 4.442706 AGGAGTACATACGGAGCAAAATG 58.557 43.478 0.00 0.00 0.00 2.32
4302 4522 6.368805 AGCCCTTTTAGAGATTCCAATAAGG 58.631 40.000 0.00 0.00 39.47 2.69
4303 4523 7.888250 AAGCCCTTTTAGAGATTCCAATAAG 57.112 36.000 0.00 0.00 0.00 1.73
4336 4556 0.108281 GCTTGGTACTCCCTCCGTTC 60.108 60.000 0.00 0.00 0.00 3.95
4337 4557 0.834687 TGCTTGGTACTCCCTCCGTT 60.835 55.000 0.00 0.00 0.00 4.44
4338 4558 0.834687 TTGCTTGGTACTCCCTCCGT 60.835 55.000 0.00 0.00 0.00 4.69
4339 4559 0.541863 ATTGCTTGGTACTCCCTCCG 59.458 55.000 0.00 0.00 0.00 4.63
4340 4560 2.772515 AGTATTGCTTGGTACTCCCTCC 59.227 50.000 0.00 0.00 0.00 4.30
4341 4561 3.451178 TCAGTATTGCTTGGTACTCCCTC 59.549 47.826 0.00 0.00 0.00 4.30
4342 4562 3.450904 TCAGTATTGCTTGGTACTCCCT 58.549 45.455 0.00 0.00 0.00 4.20
4343 4563 3.906720 TCAGTATTGCTTGGTACTCCC 57.093 47.619 0.00 0.00 0.00 4.30
4344 4564 4.833390 AGTTCAGTATTGCTTGGTACTCC 58.167 43.478 0.00 0.00 0.00 3.85
4345 4565 6.872020 TGTTAGTTCAGTATTGCTTGGTACTC 59.128 38.462 0.00 0.00 0.00 2.59
4346 4566 6.765403 TGTTAGTTCAGTATTGCTTGGTACT 58.235 36.000 0.00 0.00 0.00 2.73
4347 4567 7.611213 ATGTTAGTTCAGTATTGCTTGGTAC 57.389 36.000 0.00 0.00 0.00 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.